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Transcriptome

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Primary Details

Project ID PTP006
Transcriptome ID PTE016
Plant Name Pelargonium graveolens
Genome ID

Plant Classification

Kingdom Plantae
Phylum Streptophyta
Class Magnolipsida
Order Geraniales
Family Geraniaceae
Genus Pelargonium
Species graveolens
Variety/Line/Chemotype

Transcriptome Details

Sample Tissue Leaf
Variety Bourbon
Study Title Pelargonium graveolens Transcriptome or Gene expression
Description eaf transcriptome sequencing of Pelargonium graveolens for better understanding the terpenoid biosynthesis in the plant.
Sequencing Platform Illumina HiSeq 2000
Sequencing Strategy RNA-Seq
Sequencing Library PAIRED
Experiment Type
Replicate Number 0
Total Replicates 0
Merged replicated 0
Library Name Sample2_Geranium_Leaf_Truseq_library
Selection Method cDNA
Number of run 1
Spots No 20,655,584
Bases no 4.2G
Spot Length 20.7M

Raw Reads Downlaod (.fastq)

Download Raw RNA-Seq Data (.fastq)
RNA-Seq Reads File 1 (Forward)
Open Link
RNA-Seq Reads File 2 (Reverse)
Open Link

Raw Data QC Report (FastQC)

Gene Ontology (GO) mapping results details
Additional Details (miRNA/Network Analysis)
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Additional results highlights
Download

De-Novo Transcriptome Assembly Data

Plants Enzymes/CYP-P450s/GTs/BGLU Details
Additional results highlights
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Post-Assembly Quality Check Report

InterproScan Results for Protein Families/Motifs/Domains
Differentially expressed isoforms/genes
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Additional Functional Annotation Details (GO/Annotation images)
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Pathway genes

SSR/SNP Details
CD-HIT-EST clustered assembly file
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Other Related Entries

Project ID Experiment ID Plant Name Sample/Tissue Exp. Type Replicate No. Total Replicates No. Merged Assembly (Replicates)
PTP006 PTE010 Pelargonium graveolens Leaf Control
PTP006 PTE011 Pelargonium graveolens Leaf Treated
PTP006 PTE015 Pelargonium graveolens Trichome 0 0 0
PTP006 PTE016 Pelargonium graveolens Leaf 0 0 0
PTP006 PTE040 Pelargonium graveolens Leaf Leaf transcriptome 0 0 0