Primary Details
| Project ID | PTP032 |
| Transcriptome Exp. ID | PTE084 |
| Plant Name | Withania somnifera |
| Genome ID | GEN2 |
Plant Classification
|
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Solanales | |
| Family | Solanaceae | |
| Genus | Withania | |
| Species | somnifera | |
| Variety | Nagori (Chetak) |
Transcriptome Details
Sample Tissue
Central part of root inside cambium (Rep3)
Line/Chemotype/Cultivar
Nagori (Chetak)
Study Title
Withania somnifera cultivar Nagori (chetak) root transcriptome or gene expression
Description
RNA-seq data of Withania somnifera cv Nagori (chetak) roots of different radial regions viz. NLC (outside cambium) and NLP (inside cambium)
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
3
Total Replicates
3
Merged replicated
1
Library Name
6
Selection Method
RT-PCR
Number of run
1
Spots No
18759842
Bases no
5.6
Spot Length
300
Submitted By
Dr. Pradipto Mukhopadhyay
Affliated Institute
CSIR-Central Instittute of Medicinal and Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP032 | PTE084 | Withania somnifera | Central part of root inside cambium (Rep3) | Control | 3 | 3 | 1 | - |
| PTP032 | PTE085 | Withania somnifera | Central part of root inside cambium (Rep2) | Control | 2 | 3 | 1 | - |
| PTP032 | PTE086 | Withania somnifera | Central part of root inside cambium (Rep1) | Control | 1 | 3 | 1 | - |
| PTP032 | PTE087 | Withania somnifera | Root part containing cell layers outside cambium (Rep3) | Control | 3 | 3 | 1 | - |
| PTP032 | PTE088 | Withania somnifera | Root part containing cell layers outside cambium (Rep2) | Control | 2 | 3 | 1 | - |
| PTP032 | PTE089 | Withania somnifera | Root part containing cell layers outside cambium (Rep1) | Control | 1 | 3 | 1 | - |