Primary Details
| Project ID | PTP031 |
| Transcriptome Exp. ID | PTE082 |
| Plant Name | Tanacetum cinerariifolium |
| Genome ID |
Plant Classification
|
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Asterales | |
| Family | Asteraceae | |
| Genus | Tanacetum | |
| Species | cinerariifolium | |
| Variety | NA |
Transcriptome Details
Sample Tissue
Leaf
Line/Chemotype/Cultivar
NA
Study Title
Next generation sequencing and de novo transcriptome analysis of Tanacetum cinerariifolium
Description
Pyrethrins are natural insecticidal monoterpenoids consists of either a chrysanthemic acid or pyrethric acid with a rethrolone moiety. Inspite of its industrial attributes most of the enzymes and genes involved in the pyrethrin biosynthesis pathway remains uncharacterized. Since the major pyrethrins are present in the flower of T. cinerariefolium our study is focused on the de novo transcriptome comparison of flower versus leaf tissues. To identify the molecular signatures in the transcriptome related to pyrethrin biosynthetic pathway, next generation transcriptome Sequencing was used.
Sequencing Platform
Illumina HiSeq 2000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
Pyrethrum_cDNA
Selection Method
PolyA
Number of run
1
Spots No
14290110
Bases no
2.9
Spot Length
202
Submitted By
Dr. Feroz Khan
Affliated Institute
CSIR-Central Institute of Medicinal and Aromatic Plant
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Raw Reads Downlaod (.fastq)
Download Raw Reads (RNA-Seq) from original source (SRA, NCBI, USA/ENA/Other DBs)
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP031 | PTE082 | Tanacetum cinerariifolium | Leaf | Control | 1 | 1 | 1 | - |
| PTP031 | PTE083 | Tanacetum cinerariifolium | Flower | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Khan, S., Upadhyay, S., Khan, F. et al. Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium . BMC Genomics 18, 54 (2017). https://doi.org/10.1186/s12864-016-3409-4 |