Primary Details
| Project ID | PTP004 |
| Transcriptome Exp. ID | PTE015 |
| Plant Name | Arabidopsis thaliana |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Brassicales | |
| Family | Brassicaceae | |
| Genus | Arabidopsis | |
| Species | thaliana | |
| Variety | Col. 0 |
Transcriptome Details
Sample Tissue
Flower & silique
Line/Chemotype/Cultivar
Col. 0
Study Title
Tissue specific transcriptome analysis of Arabidopsis thaliana
Description
Tissue specific transcriptome analysis of Arabidopsis thaliana
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Wild
Replicate Number
1
Total Replicates
2
Merged replicated
0
Library Name
1
Selection Method
PCR
Number of run
1
Spots No
30287289
Bases no
9.1
Spot Length
300
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-Central Institute of Medicinal and Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP004 | PTE014 | Arabidopsis thaliana | Flower & silique | Control | 2 | 2 | 0 | - |
| PTP004 | PTE015 | Arabidopsis thaliana | Flower & silique | Wild | 1 | 2 | 0 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Leinonen, R., Sugawara, H., Shumway, M., & International Nucleotide Sequence Database Collaboration. (2010). The sequence read archive. Nucleic acids research, 39(suppl_1), D19-D21. |