Primary Details
| Project ID | PTP004 |
| Transcriptome Exp. ID | PTE015 |
| Plant Name | Arabidopsis thaliana |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Brassicales | |
| Family | Brassicaceae | |
| Genus | Arabidopsis | |
| Species | thaliana | |
| Variety |
Transcriptome Details
Sample Tissue
Flower & silique
Line/Chemotype/Cultivar
Col. 0
Study Title
Tissue specific transcriptome analysis of Arabidopsis thaliana
Description
Tissue specific transcriptome analysis of Arabidopsis thaliana
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Replicate Number
Total Replicates
Merged replicated
Library Name
1
Selection Method
PCR
Number of run
Spots No
30287289
Bases no
9.1G
Spot Length
300
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-Central Institute of Medicinal and Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
Raw Reads Downlaod (.fastq)
Download Raw RNA-Seq Data (.fastq)
Raw Data QC Report (FastQC)
Gene Ontology (GO) mapping results details
De-Novo Transcriptome Assembly Data
Plants Enzymes/CYP-P450s/GTs/BGLU Details
|
Enrichment Analysis (KEGG/GO)
View
|
|
Post-Assembly Quality Check Report
InterproScan Results for Protein Families/Motifs/Domains
|
Overall reads-realignment statistics (Bowtie2)
View
|
|
|
|
InterproScan Results for Protein Families/Motifs/Domains
View
|
|
Pathway genes
Please Sign-In to access the details
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP004 | PTE014 | Arabidopsis thaliana | Flower & silique | - | ||||
| PTP004 | PTE015 | Arabidopsis thaliana | Flower & silique | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Leinonen, R., Sugawara, H., Shumway, M., & International Nucleotide Sequence Database Collaboration. (2010). The sequence read archive. Nucleic acids research, 39(suppl_1), D19-D21. |