Primary Details
| Project ID | PTP003 |
| Transcriptome Exp. ID | PTE008 |
| Plant Name | Arabidopsis thaliana |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Brassicales | |
| Family | Brassicaceae | |
| Genus | Arabidopsis | |
| Species | thaliana | |
| Variety |
Transcriptome Details
Sample Tissue
Whole seedling
Line/Chemotype/Cultivar
NA
Study Title
Reference-based Transcriptome Analysis of Arabidopsis samples
Description
Reference-based comparative transcriptome analysis of Arabidopsis thaliana of MaMYB TF OE Line 1, MaMYB TF OE Line 2, MaRAP2 TF OE Line 1, MaRAP2 TF OE Line 2, WT Col-0 I, WT Col-0 II.
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Strategy
Other
Sequencing Library
Paired
Experiment Type
Replicate Number
Total Replicates
Merged replicated
Library Name
SO_11011_WT_Col_0_2
Selection Method
OTHER
Number of run
Spots No
16041003
Bases no
4.8G
Spot Length
300
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-Central Institute of Medicinal and Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP003 | PTE008 | Arabidopsis thaliana | Whole seedling | - | ||||
| PTP003 | PTE009 | Arabidopsis thaliana | Whole seedling | - | ||||
| PTP003 | PTE010 | Arabidopsis thaliana | Whole seedling | - | ||||
| PTP003 | PTE011 | Arabidopsis thaliana | Whole seedling | - | ||||
| PTP003 | PTE012 | Arabidopsis thaliana | Whole seedling | - | ||||
| PTP003 | PTE013 | Arabidopsis thaliana | Whole seedling | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Leinonen, R., Sugawara, H., Shumway, M., & International Nucleotide Sequence Database Collaboration. (2010). The sequence read archive. Nucleic acids research, 39(suppl_1), D19-D21. |