Primary Details
| Project ID | PTP002 |
| Transcriptome Exp. ID | PTE007 |
| Plant Name | Andrographis paniculata |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Lamiales | |
| Family | Acanthaceae | |
| Genus | Andrographis | |
| Species | paniculata | |
| Variety | CIM-Megha |
Transcriptome Details
Sample Tissue
Flower
Line/Chemotype/Cultivar
CIM-Megha
Study Title
De novo sequencing and comparative analysis of leaf and root transcriptomes of Andrographis paniculata.
Description
Comparative transcriptomics analysis of leaf and root samples of Andrographis paniculata.
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
4
Selection Method
PCR
Number of run
1
Spots No
61134290
Bases no
18.3
Spot Length
7.7G
Submitted By
Dr. Sumit Ghosh
Affliated Institute
Central Institute of Medicinal and Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP002 | PTE003 | Andrographis paniculata | Seed pod | Control | 1 | 1 | 1 | - |
| PTP002 | PTE004 | Andrographis paniculata | Leaf | Control | 1 | 1 | 1 | - |
| PTP002 | PTE005 | Andrographis paniculata | Root | Control | 1 | 1 | 1 | - |
| PTP002 | PTE006 | Andrographis paniculata | Stem | Control | 1 | 1 | 1 | - |
| PTP002 | PTE007 | Andrographis paniculata | Flower | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Leinonen, R., Sugawara, H., Shumway, M., & International Nucleotide Sequence Database Collaboration. (2010). The sequence read archive. Nucleic acids research, 39(suppl_1), D19-D21. |