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Transcriptome
Primary Details
| Project ID | PTP002 |
| Transcriptome ID | EXP003 |
| Plant Name | Tagetes erecta |
| Genome ID |
Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Asterales | |
| Family | Asteraceae | |
| Genus | Tagetes | |
| Species | erecta | |
| Variety/Line/Chemotype |
Transcriptome Details
| Sample Tissue | Disc floret from flower |
| Variety | NA |
| Study Title | Next generation sequencing and de novo transcriptome analysis of Tagetes erecta |
| Description | Next generation sequencing and de novo transcriptome analysis of Tagetes erecta and analysis of candidate genes involved in Thiophene biosynthesis pathway |
| Sequencing Platform | ILLUMINA |
| Sequencing Strategy | RNA-Seq |
| Sequencing Library | PAIRED |
| Experiment Type | RNA-Seq |
| Replicate Number | NA |
| Total Replicates | NA |
| Merged replicated | NA |
| Library Name | TAGF |
| Selection Method | CDNA |
| Number of run | 1 |
| Spots No | 10745054 |
| Bases no | 2.2G |
| Spot Length | 10.7M spots |
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) |
|---|---|---|---|---|---|---|---|
| PTP002 | PTE01 | Lagerstroemia speciosa | Leaf | Control | 1 | 3 | No |
| PTP002 | PTE02 | Andrographis paniculata | Leaf | Control | 2 | 3 | No |
| PTP002 | PTE03 | Andrographis paniculata | Leaf | Control | 3 | 3 | No |
| PTP002 | PTE03 | Andrographis paniculata | Leaf | Control | 3 | 3 | No |
| PTP002 | EXP001 | Tagetes erecta | Disc floret from flower | NA | NA | NA | NA |
| PTP002 | EXP003 | Tagetes erecta | Disc floret from flower | RNA-Seq | NA | NA | NA |
| PTP002 | EXP004 | Tagetes erecta | Green Leaf | RNA-Seq | NA | NA | NA |
| PTP002 | PTE003 | Andrographis paniculata | Seed pod | Reproductive stage | 1 | 1 | 0 |
| PTP002 | PTE004 | Tagetes erecta | Green Leaf | RNA-Seq | NA | NA | NA |