Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Asterales | |
| Family | Asteraceae | |
| Genus | Tagetes | |
| Species | erecta | |
| Variety | specimen number 12939 |
Transcriptome Details
Sample Tissue
Flower
Line/Chemotype/Cultivar
specimen number 12939
Study Title
Next generation sequencing and de novo transcriptome analysis of Tagetes erecta
Description
Next generation sequencing and de novo transcriptome analysis of Tagetes erecta and analysis of candidate genes involved in Thiophene biosynthesis pathway
Sequencing Platform
Illumina HiSeq 2000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
TAG_L
Selection Method
cDNA
Number of run
1
Spots No
12765782
Bases no
2.6
Spot Length
202
Submitted By
Dr. Laiq-Ur-Rahman
Affliated Institute
CSIR-CIMAP
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP028 | PTE068 | Tagetes erecta | Flower | Control | 1 | 1 | 1 | - |
| PTP028 | PTE069 | Tagetes erecta | Flower | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Leinonen, R., Sugawara, H., Shumway, M., & International Nucleotide Sequence Database Collaboration. (2010). The sequence read archive. Nucleic acids research, 39(suppl_1), D19-D21. |