Primary Details
| Project ID | PTP025 |
| Transcriptome Exp. ID | PTE062 |
| Plant Name | Papaver somniferum |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Ranunculales | |
| Family | Papaveraceae | |
| Genus | Papaver | |
| Species | somniferum | |
| Variety | Jawahar-16 (J-16) |
Transcriptome Details
Sample Tissue
Leaf
Line/Chemotype/Cultivar
Jawahar-16 (J-16)
Study Title
Papaver somniferum cultivar:Jawahar-16 (J-16) Transcriptome or Gene expression
Description
RNA sequencing to understand the effect of endophyte SMR1, on P. somniferum gene expression leading to enhanced tolerance against downy mildew, caused by Peronospora spp.
Sequencing Platform
Illumina HiSeq 2000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Treated
Replicate Number
1
Total Replicates
2
Merged replicated
0
Library Name
CP_RNA_Treated_T1
Selection Method
RANDOM
Number of run
1
Spots No
19023357
Bases no
3.8
Spot Length
202
Submitted By
Dr. Alok Kalra
Affliated Institute
CSIR-CIMAP
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP025 | PTE062 | Papaver somniferum | Leaf | Treated | 1 | 2 | 0 | - |
| PTP025 | PTE063 | Papaver somniferum | Leaf | Treated | 2 | 2 | NA | - |
| PTP025 | PTE064 | Papaver somniferum | Leaf | Control | 1 | 2 | 0 | - |
| PTP025 | PTE065 | Papaver somniferum | Leaf | Control | 2 | 2 | 0 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Ray, T., Pandey, A., Pandey, S.S., Singh, S., Shanker, K. & Kalra, A. (2021) Molecular insights into enhanced resistance of Papaver somniferum against downy mildew by application of endophyte bacteria Microbacterium sp. SMR1. Physiologia Plantarum, 173(4), 1862–1881. Available from: https://doi.org/10.1111/ppl.13528 |