Primary Details
| Project ID | PTP024 |
| Transcriptome Exp. ID | PTE060 |
| Plant Name | Nicotiana tabacum |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Solanales | |
| Family | Solanaceae | |
| Genus | Nicotiana | |
| Species | tabacum | |
| Variety | Xanthi |
Transcriptome Details
Sample Tissue
Seedlings
Line/Chemotype/Cultivar
Xanthi
Study Title
Reference based transcriptome analysis of Nicotiana tabacum transgenic seedlings (T1) vs wild type control seedlings (WT2)
Description
Comparative transcriptome analysis of transgenic (T1) and wild type control seedlings (WT2) of Nicotiana tabacum after germination.
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
lib02
Selection Method
cDNA
Number of run
1
Spots No
33960707
Bases no
10.3
Spot Length
302
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-CIMAP
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP024 | PTE060 | Nicotiana tabacum | Seedlings | Control | 1 | 1 | 1 | - |
| PTP024 | PTE061 | Nicotiana tabacum | Seedlings | Treated | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Swati Upadhyay, Gajendra Singh Jeena, Sunil Kumar, Rakesh Kumar Shukla (2020). Asparagus racemosus bZIP transcription factor-regulated squalene epoxidase (ArSQE) promotes germination and abiotic stress tolerance in transgenic tobacco. Plant Science. Volume 290,110291. https://doi.org/10.1016/j.plantsci.2019.110291. |