Primary Details
| Project ID | PTP023 |
| Transcriptome Exp. ID | PTE059 |
| Plant Name | Ocimum tenuiflorum |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Lamiales | |
| Family | Lamiaceae | |
| Genus | Ocimum | |
| Species | tenuiflorum | |
| Variety | CIM-Ayu |
Transcriptome Details
Sample Tissue
Leaf
Line/Chemotype/Cultivar
CIM-Ayu
Study Title
De novo sequencing and characterization of Ocimum sanctum L.transcriptome for better understanding of secondary metabolism pathways in the plants.
Description
De novo sequencing and characterization of Ocimum sanctum L.transcriptome for better understanding of secondary metabolism pathways in the plants.
Sequencing Platform
Illumina HiSeq 2000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Wild
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
002
Selection Method
PolyA
Number of run
1
Spots No
47445385
Bases no
9.5
Spot Length
200
Submitted By
Dr. Ajit K. Shasany
Affliated Institute
CSIR-Central Institute Of Medicinal And Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP023 | PTE059 | Ocimum tenuiflorum | Leaf | Wild | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Rastogi S, Meena S, Bhattacharya A, Ghosh S, Shukla RK, Sangwan NS, Lal RK, Gupta MM, Lavania UC, Gupta V, Nagegowda DA, Shasany AK. De novo sequencing and comparative analysis of holy and sweet basil transcriptomes. BMC Genomics. 2014 Jul 12;15(1):588. doi: 10.1186/1471-2164-15-588. PMID: 25015319; PMCID: PMC4125705. |