Primary Details
| Project ID | PTP022 |
| Transcriptome Exp. ID | PTE058 |
| Plant Name | Ocimum basilicum |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Lamiales | |
| Family | Lamiaceae | |
| Genus | Ocimum | |
| Species | basilicum | |
| Variety | CIM-Saumya |
Transcriptome Details
Sample Tissue
Leaf
Line/Chemotype/Cultivar
CIM-Saumya
Study Title
Ocimum basilicum Transcriptome or Gene expression
Description
De novo sequencing and characterization of Ocimum basilicum L. transcriptome for better understanding of secondary metabolism pathways in the plants.
Sequencing Platform
Illumina HiSeq 2000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
001
Selection Method
PolyA
Number of run
1
Spots No
52333540
Bases no
10.5
Spot Length
200
Submitted By
Dr. Dinesh Nagegowda
Affliated Institute
CSIR-CIMAP
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP022 | PTE058 | Ocimum basilicum | Leaf | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Rastogi S, Meena S, Bhattacharya A, Ghosh S, Shukla RK, Sangwan NS, Lal RK, Gupta MM, Lavania UC, Gupta V, Nagegowda DA, Shasany AK. De novo sequencing and comparative analysis of holy and sweet basil transcriptomes. BMC Genomics. 2014 Jul 12;15(1):588. doi: 10.1186/1471-2164-15-588. PMID: 25015319; PMCID: PMC4125705. |