Primary Details
| Project ID | PTP012 |
| Transcriptome Exp. ID | PTE041 |
| Plant Name | Chrysopogon zizanioides |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Poales | |
| Family | Poaceae | |
| Genus | Chrysopogon | |
| Species | zizanioides | |
| Variety | CIM-Vriddhi |
Transcriptome Details
Sample Tissue
Root
Line/Chemotype/Cultivar
CIM-Vriddhi
Study Title
Transcriptome Sequencing of Chrysopogon zizanioides root tissue
Description
Transcriptome and metabolome analysis of sesquiterpene diversity in Indian vetiver (Chrysopogon zizanioides L. Roberty)
Sequencing Platform
Illumina HiSeq 2500
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
2
Merged replicated
0
Library Name
VM7
Selection Method
Random PCR
Number of run
1
Spots No
30877261
Bases no
9.3
Spot Length
301
Submitted By
Dr. Ajit K. Shasany
Affliated Institute
CSIR-Central Institute Of Medicinal And Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP012 | PTE032 | Chrysopogon zizanioides | Root | Control | 2 | 2 | 0 | - |
| PTP012 | PTE033 | Chrysopogon zizanioides | Root | Control | 1 | 2 | 0 | - |
| PTP012 | PTE034 | Chrysopogon zizanioides | Root | Control | 2 | 2 | 0 | - |
| PTP012 | PTE035 | Chrysopogon zizanioides | Root | Control | 1 | 2 | 0 | - |
| PTP012 | PTE036 | Chrysopogon zizanioides | Root | Control | 2 | 2 | 0 | - |
| PTP012 | PTE037 | Chrysopogon zizanioides | Root | Control | 1 | 2 | 0 | - |
| PTP012 | PTE038 | Chrysopogon zizanioides | Root | Control | 2 | 2 | 0 | - |
| PTP012 | PTE039 | Chrysopogon zizanioides | Root | Control | 1 | 2 | 0 | - |
| PTP012 | PTE040 | Chrysopogon zizanioides | Root | Control | 2 | 2 | 0 | - |
| PTP012 | PTE041 | Chrysopogon zizanioides | Root | Control | 1 | 2 | 0 | - |
| PTP012 | PTE042 | Chrysopogon zizanioides | Root | Control | 2 | 2 | 0 | - |
| PTP012 | PTE043 | Chrysopogon zizanioides | Root | Control | 1 | 2 | 0 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Ranjana Maurya, Pallavi Yadav, Ram Krishna, Pallavi Kulkarni, Shubhra Rastogi, Soumyajit Mohapatra, Shubham Srivastava, Mohammad Qussen Akhtar, Abhishek Kumar Shukla, Harmesh Singh Chauhan, Rajesh Kumar Verma, Chandan Singh Chanotiya, Ajit Kumar Shasany (2023). Transcriptome and metabolome analysis of sesquiterpene diversity in Indian vetiver (Chrysopogon zizanioides L. Roberty). Industrial Crops and Products. Volume 200, Part B,116798. https://doi.org/10.1016/j.indcrop.2023.116798. |