Primary Details
| Project ID | PTP011 |
| Transcriptome Exp. ID | PTE031 |
| Plant Name | Centella asiatica |
| Genome ID |
Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Apiales | |
| Family | Apiaceae | |
| Genus | Centella | |
| Species | asiatica | |
| Variety | NA |
Transcriptome Details
Sample Tissue
Leaf
Line/Chemotype/Cultivar
NA
Study Title
Analysis of Centella asiatica leaf transcriptome
Description
De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to secondary metabolism
Sequencing Platform
Illumina Genome Analyzer II
Sequencing Strategy
RNA-Seq
Sequencing Library
Single
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
NGS_127
Selection Method
Other
Number of run
1
Spots No
3611520
Bases no
0.26
Spot Length
72
Submitted By
Dr. Rajendra Sangwan
Affliated Institute
CSIR-Central Institute Of Medicinal And Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Raw Reads Downlaod (.fastq)
Download Raw Reads (RNA-Seq) from original source (SRA, NCBI, USA/ENA/Other DBs)
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RNA-Seq Reads File 1 (Forward)
Open Link
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Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP011 | PTE031 | Centella asiatica | Leaf | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Sangwan RS, Tripathi S, Singh J, Narnoliya LK, Sangwan NS. De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to secondary metabolism. Gene. 2013 Aug 1;525(1):58-76. doi: 10.1016/j.gene.2013.04.057. Epub 2013 May 1. PMID: 23644021. |