Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Lamiales | |
| Family | Plantaginaceae | |
| Genus | Bacopa | |
| Species | monnieri | |
| Variety | CIM-Jagriti |
Transcriptome Details
Sample Tissue
Shoot
Line/Chemotype/Cultivar
CIM-Jagriti
Study Title
Comparative transcriptome analysis of Bacopa monnieri after MEJA treatment
Description
Characterization of MYB35 regulated methyl jasmonate and wound responsive Geraniol 10-hydroxylase-1 gene from Bacopa monnieri
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
MeJa-treated
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
lib1
Selection Method
PCR
Number of run
1
Spots No
26363479
Bases no
7.9
Spot Length
300
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-Central Institute Of Medicinal And Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP008 | PTE024 | Bacopa monnieri | Shoot | MeJa-treated | 1 | 1 | 1 | - |
| PTP008 | PTE025 | Bacopa monnieri | Shoot | MeJa-treated | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Jeena GS, Kumar S, Shukla RK. Characterization of MYB35 regulated methyl jasmonate and wound responsive Geraniol 10-hydroxylase-1 gene from Bacopa monnieri. Planta. 2021 Apr 5;253(5):89. PMID: 33818685. |