Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Lamiales | |
| Family | Plantaginaceae | |
| Genus | Bacopa | |
| Species | monnieri | |
| Variety | CIM-Jagriti |
Transcriptome Details
Sample Tissue
Root and shoot
Line/Chemotype/Cultivar
CIM-Jagriti
Study Title
Analysis of leaf and root transcriptome of Bacopa monnieri
Description
The study focusses on understanding the synthesis of baccosides in Bacopa monnieri.
Sequencing Platform
NextSeq 500
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
NA
Selection Method
PolyA
Number of run
1
Spots No
70825073
Bases no
14.3
Spot Length
202
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-Central Institute Of Medicinal And Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP007 | PTE023 | Bacopa monnieri | Root and shoot | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Jeena GS, Fatima S, Tripathi P, Upadhyay S, Shukla RK. Comparative transcriptome analysis of shoot and root tissue of Bacopa monnieri identifies potential genes related to triterpenoid saponin biosynthesis. BMC Genomics. 2017 Jun 28;18(1):490. doi: 10.1186/s12864-017-3865-5. PMID: 28659188; PMCID: PMC5490213. |