Primary Details
| Project ID | PTP006 |
| Transcriptome Exp. ID | PTE022 |
| Plant Name | Asparagus racemosus |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Asparagales | |
| Family | Asparagaceae | |
| Genus | Asparagus | |
| Species | racemosus | |
| Variety | CIM-Shakti |
Transcriptome Details
Sample Tissue
Leaf and root
Line/Chemotype/Cultivar
CIM-Shakti
Study Title
Analysis of leaf and root transcriptome of Asparagus racemosus (CIM-Shakti)
Description
The study is focusses on the comparative de-novo transcriptome analysis of root versus leaf tissue and identifying some root specific transcripts involved in saponin biosynthesis using high-throughput next generation transcriptome sequencing.
Sequencing Platform
Illumina HiSeq 2500
Sequencing Strategy
WGS
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
TruSeq RNA library
Selection Method
PolyA
Number of run
1
Spots No
58953846
Bases no
11.9
Spot Length
202
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-Central Institute Of Medicinal And Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP006 | PTE022 | Asparagus racemosus | Leaf and root | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Leinonen, R., Sugawara, H., Shumway, M., & International Nucleotide Sequence Database Collaboration. (2010). The sequence read archive. Nucleic acids research, 39(suppl_1), D19-D21. |
| 2 | Upadhyay, S., Phukan, U.J., Mishra, S. et al. De novo leaf and root transcriptome analysis identified novel genes involved in Steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics 15, 746 (2014). |
| 3 | Upadhyay, S., Phukan, U.J., Mishra, S. et al. De novo leaf and root transcriptome analysis identified novel genes involved in Steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics 15, 746 (2014). |