Primary Details
| Project ID | PTP033 |
| Transcriptome Exp. ID | PTE0112 |
| Plant Name | Withania somnifera |
| Genome ID | GEN2 |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Solanales | |
| Family | Solanaceae | |
| Genus | Withania | |
| Species | somnifera | |
| Variety | Nagori (chetak) |
Transcriptome Details
Sample Tissue
Whole root
Line/Chemotype/Cultivar
Nagori (chetak)
Study Title
Withania somnifera cultivar:Nagori (chetak) Raw sequence reads
Description
Withania somnifere 45 days root pot grown replicate #1 F
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Treated
Replicate Number
2
Total Replicates
3
Merged replicated
0
Library Name
45NP2
Selection Method
Oligo-dT
Number of run
1
Spots No
12754817
Bases no
3.8
Spot Length
300
Submitted By
Dr. Pradipto Mukhopadhyay
Affliated Institute
CSIR-Central Instittute of Medicinal and Aromatic Plants
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP033 | PTE090 | Withania somnifera | Whole root | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE091 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE092 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE093 | Withania somnifera | Whole root | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE094 | Withania somnifera | Whole root | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE095 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE096 | Withania somnifera | Whole root | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE097 | Withania somnifera | 2/4th portion of root from base | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE098 | Withania somnifera | 2/4th portion of root from base | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE099 | Withania somnifera | 2/4th portion of root from base | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE0100 | Withania somnifera | Whole root | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE0101 | Withania somnifera | Whole root | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE0102 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE0103 | Withania somnifera | Whole root | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE0104 | Withania somnifera | Whole root | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE0105 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE0106 | Withania somnifera | Whole root | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE0107 | Withania somnifera | 2/4th portion of root from base | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE0108 | Withania somnifera | 2/4th portion of root from base | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE0109 | Withania somnifera | 2/4th portion of root from base | Treated | 1 | 3 | 0 | - |
| PTP033 | PTE0110 | Withania somnifera | Whole root | Treated | 3 | 3 | 0 | - |
| PTP033 | PTE0111 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE0112 | Withania somnifera | Whole root | Treated | 2 | 3 | 0 | - |
| PTP033 | PTE0113 | Withania somnifera | Whole root | Treated | 1 | 3 | 0 | - |