Primary Details
| Project ID | PTP027 |
| Transcriptome Exp. ID | PTE067 |
| Plant Name | Pelargonium graveolens |
| Genome ID |
Plant Classification
|
||
| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Geraniales | |
| Family | Geraniaceae | |
| Genus | Pelargonium | |
| Species | graveolens | |
| Variety | Bourbon |
Transcriptome Details
Sample Tissue
Trichome
Line/Chemotype/Cultivar
Bourbon
Study Title
RANseq of Pelargonium graveolens Trichome
Description
Trichome transcriptome sequencing of Pelargonium graveolens for better understanding the terpenoid biosynthesis in the plant.
Sequencing Platform
Illumina HiSeq 2000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Control
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
Sample_Geranium_Leaf_Truseq_library
Selection Method
cDNA
Number of run
1
Spots No
21954540
Bases no
4.4
Spot Length
202
Submitted By
Dr. Ajit Shasany
Affliated Institute
CSIR-CIMAP
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP027 | PTE067 | Pelargonium graveolens | Trichome | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Ajay Kumar, Soumitra Patekar, Soumyajit Mohapatra, Devendra Kumar Patel, N.R. Kiran, Priyanka Jaiswal, Dinesh A. Nagegowda, Ajit Kumar Shasany (2024). Isoprenyl diphosphate synthases of terpenoid biosynthesis in rose-scented geranium (Pelargonium graveolens). Plant Physiology and Biochemistry. Volume 210. https://doi.org/10.1016/j.plaphy.2024.108590. |