Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Lamiales | |
| Family | Lamiaceae | |
| Genus | Mentha | |
| Species | arvensis | |
| Variety | CIM-KOSI |
Transcriptome Details
Sample Tissue
Aerial root
Line/Chemotype/Cultivar
CIM-KOSI
Study Title
Comparative transcriptome analysis of Mentha arvensis root vs adventitious root after waterlogging treatment.
Description
Transcriptome analysis of root and adventitious root emerged after water logging in Mentha arvensis.
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Treated
Replicate Number
1
Total Replicates
1
Merged replicated
1
Library Name
lib8
Selection Method
cDNA
Number of run
1
Spots No
29490531
Bases no
8.8
Spot Length
300
Submitted By
Dr. Rakesh Kumar Shukla
Affliated Institute
CSIR-CIMAP
Country
India
State
Uttar Pradesh
City
Lucknow
SRA (NCBI) Project ID
SRA (NCBI) Experiment ID
SRA (NCBI) Sample ID
SRA (NCBI) Run ID
Other Related Entries
| Project ID | Experiment ID | Plant Name | Sample/Tissue | Exp. Type | Replicate No. | Total Replicates No. | Merged Assembly (Replicates) | DEGs (Pair) |
|---|---|---|---|---|---|---|---|---|
| PTP017 | PTE049 | Mentha Arvensis | Aerial root | Treated | 1 | 1 | 1 | - |
| PTP017 | PTE050 | Mentha Arvensis | Root | Control | 1 | 1 | 1 | - |
| PTP017 | PTE051 | Mentha Arvensis | Aerial root | Treated | 1 | 1 | 1 | - |
| PTP017 | PTE052 | Mentha Arvensis | Root | Control | 1 | 1 | 1 | - |
Reference/Publication Details
| Sr. No | Publication details |
|---|---|
| 1 | Shikha, Pandey, D.K., Upadhyay, S. et al. Transcriptome analysis of waterlogging-induced adventitious root and control taproot of Mentha arvensis. Plant Cell Rep 43, 104 (2024). https://doi.org/10.1007/s00299-024-03182-2 |