Primary Details
| Project ID | PTP034 |
| Transcriptome Exp. ID | PTE0115 |
| Plant Name | Withania somnifera |
| Genome ID | GEN2 |
Plant Classification
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| Kingdom | Plantae | |
| Phylum | Streptophyta | |
| Class | Magnolipsida | |
| Order | Solanales | |
| Family | Solanaceae | |
| Genus | Withania | |
| Species | somnifera | |
| Variety | CWS11XCWS7 |
Transcriptome Details
Sample Tissue
whole plant
Line/Chemotype/Cultivar
CWS11XCWS7
Study Title
RNA seq analysis of CWS11x CWS74 F1hybrid of different Ecotype of Ashwagandha (Withania somnifera) genotypically adapted to specific environmental conditions
Description
To understand the genotypic adaptational polymorphisms in the two ecotypes of Ashwagandha i.e the dwarf, yellow berry, annual type and tall, red berry perennial, Kashmiri type, for their different response to their specific niche environment RNA seq expression profiling of one month old glass house grown plant of CWS7xCWS11F1 hybrid of different ecotype of Ashwagandha (Withania somnifera) genotypically adapted to specific environmental conditions was performed using Illumina HiSeq 2000 NEXTflex Directional RNA-Seq (dUTP based) strand specific libraries yielding 23 million processed reads assembling in 60477 contigs of an average N50 of 1687.
Sequencing Platform
Illumina HiSeq 4000
Sequencing Strategy
RNA-Seq
Sequencing Library
Paired
Experiment Type
Replicate Number
Total Replicates
Merged replicated
Library Name
CWS11XCWS7
Selection Method
PCR
Number of run
Spots No
27,003,085
Bases no
8.2G
Spot Length
302
Submitted By
NA