FastQCFastQC Report
Thu 11 Jul 2024
E_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameE_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42293075
Sequences flagged as poor quality0
Sequence length50-159
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8938152.113383810470154No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1294790.3061470465318495No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT435530.10297903380163301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)