FastQCFastQC Report
Wed 10 Jul 2024
C_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31612088
Sequences flagged as poor quality0
Sequence length50-159
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGC686140.217049882943512No Hit
GGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCC484370.15322303291070175No Hit
AATGAAAACATTCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAA465730.14732655432314373No Hit
GCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCC457600.14475475330829143No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCAGTTGTTCGT454100.14364758189968344No Hit
GTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCT361850.11446570691565833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)