# target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target Description of the predicted protein with scaffold details Model Scaffold ID with Start and End Position of Predicted Protein bZIP_1 PF00170.16 g76322.t1 - 0.42 10.5 6.4 1.2 9.1 1.9 2.6 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2623_contigs=9, transcript_loc=scaffold2623_contigs=9:94306-95094 Augustus predicted protein sequence Tomato scaffold2623_contigs=9~94306-95094 DctM PF06808.7 g11896.t1 - 0.15 10.6 0 0.18 10.3 0 1 1 0 0 1 1 1 0 DctM-like transporters | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:219187-219780 Augustus predicted protein sequence Tomato scaffold530_contigs=12~219187-219780 RVT_3 PF13456.1 g15228.t1 - 0.032 13.9 0 0.043 13.5 0 1.3 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:47867-48193 Augustus predicted protein sequence Tomato scaffold623_contigs=13~47867-48193 DUF1056 PF06341.6 g33232.t1 - 0.11 12.5 0.3 0.23 11.5 0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) | Ref_seq=scaffold1123_contigs=1, transcript_loc=scaffold1123_contigs=1:4196-4926 Augustus predicted protein sequence Tomato scaffold1123_contigs=1~4196-4926 VGCC_beta4Aa_N PF12052.3 g24702.t1 - 0.016 15 0.3 0.016 15 0.2 1.6 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:154520-154918 Augustus predicted protein sequence Tomato scaffold893_contigs=2~154520-154918 Toxin_49 PF15529.1 g79864.t1 - 0.043 13.7 0.6 0.097 12.6 0.4 1.6 1 1 0 1 1 1 0 Putative toxin 49 | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:69368-69691 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~69368-69691 2OG-Fe_Oxy_2 PF10014.4 g59957.t1 - 0.015 14.6 0.2 0.027 13.8 0.2 1.4 1 0 0 1 1 1 0 2OG-Fe dioxygenase | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:422742-423726 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~422742-423726 zf-CCHC PF00098.18 g66252.t1 - 0.0065 16.3 2.2 0.0098 15.7 1.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:21841-22191 Augustus predicted protein sequence Tomato scaffold2156_contigs=2~21841-22191 TTKRSYEDQ PF10212.4 g7151.t1 - 0.033 13.1 0.1 0.037 12.9 0 1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:286360-286644 Augustus predicted protein sequence Tomato scaffold387_contigs=7~286360-286644 Cm_res_leader PF08077.6 g63465.t1 - 8.9 6.2 6.3 0.59 9.9 0.5 2 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:51112-51624 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~51112-51624 Myb_CC_LHEQLE PF14379.1 g12618.t1 - 1.8 8.2 7.5 7.5 6.2 3.3 2.6 2 0 0 2 2 2 0 MYB-CC type transfactor, LHEQLE motif | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:431266-434175 Augustus predicted protein sequence Tomato scaffold556_contigs=11~431266-434175 DUF2526 PF10735.4 g74893.t1 - 0.0079 16.1 0.3 0.015 15.2 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2526) | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:128831-129118 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~128831-129118 DUF4140 PF13600.1 g10527.t1 - 0.0074 16.7 0.7 2.5 8.5 0.2 2.5 2 0 0 2 2 2 2 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:514348-517298 Augustus predicted protein sequence Tomato scaffold498_contigs=12~514348-517298 DUF2457 PF10446.4 g75746.t1 - 0.00066 18.5 23.9 0.00075 18.3 16.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:154611-156500 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~154611-156500 CTX_RstB PF07459.6 g36573.t1 - 0.0051 16.6 0 0.014 15.2 0 1.7 1 0 0 1 1 1 1 CTX phage RstB protein | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:118565-121205 Augustus predicted protein sequence Tomato scaffold1204_contigs=5~118565-121205 PP-binding PF00550.20 g28196.t1 - 0.079 13.2 0.4 0.28 11.4 0.1 1.9 2 0 0 2 2 2 0 Phosphopantetheine attachment site | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:74269-75114 Augustus predicted protein sequence Tomato scaffold993_contigs=5~74269-75114 VHP PF02209.14 g51342.t1 - 0.15 11.7 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Villin headpiece domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:159657-160661 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~159657-160661 Unstab_antitox PF09720.5 g74115.t1 - 0.33 10.6 2.1 23 4.7 0 2.6 2 1 1 3 3 3 0 Putative addiction module component | Ref_seq=scaffold2519_contigs=3, transcript_loc=scaffold2519_contigs=3:6810-11358 Augustus predicted protein sequence Tomato scaffold2519_contigs=3~6810-11358 HrpA_pilin PF09589.5 g28583.t1 - 0.052 13.9 2.3 0.064 13.6 1.6 1.3 1 0 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:69573-69974 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~69573-69974 Mor PF08765.6 g82630.t1 - 0.088 12.5 0 0.18 11.5 0 1.4 1 0 0 1 1 1 0 Mor transcription activator family | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:291927-294222 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~291927-294222 Phage_1_1 PF08200.6 g43636.t1 - 0.072 13.3 0.1 0.24 11.6 0.1 2 1 0 0 1 1 1 0 Bacteriophage 1.1 Protein | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:203996-204998 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~203996-204998 CytoC_RC PF02276.13 g86522.t1 - 0.0003 20 0 0.64 9 0 2.1 2 0 0 2 2 2 2 Photosynthetic reaction centre cytochrome C subunit | Ref_seq=scaffold2869_contigs=1, transcript_loc=scaffold2869_contigs=1:225-3359 Augustus predicted protein sequence Tomato scaffold2869_contigs=1~225-3359 API5 PF05918.6 g29355.t1 - 2.5 6.4 6.5 3.4 6 4.5 1.3 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) | Ref_seq=scaffold1021_contigs=20, transcript_loc=scaffold1021_contigs=20:311369-312091 Augustus predicted protein sequence Tomato scaffold1021_contigs=20~311369-312091 Phage_integrase PF00589.17 g87470.t1 - 0.12 12 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:4523-4867 Augustus predicted protein sequence Tomato scaffold3123_contigs=1~4523-4867 MIase PF02426.11 g33849.t1 - 0.03 14.1 0 0.041 13.7 0 1.2 1 0 0 1 1 1 0 Muconolactone delta-isomerase | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:202693-203940 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~202693-203940 Spore_YtfJ PF09579.5 g12898.t1 - 6.3 6.7 5.6 68 3.4 3.9 2.3 1 1 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:288721-289602 Augustus predicted protein sequence Tomato scaffold561_contigs=10~288721-289602 ATHILA PF03078.10 g28472.t1 - 0.068 11.7 0 0.092 11.3 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:174096-175668 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~174096-175668 Chromo PF00385.19 g48181.t1 - 7.7E-009 35 0.4 7.7E-009 35 0.3 1.8 1 1 1 2 2 2 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:143575-143823 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~143575-143823 Myc_N PF01056.13 g57024.t1 - 0.058 12.5 7 0.079 12.1 4.8 1.2 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold1825_contigs=2, transcript_loc=scaffold1825_contigs=2:44629-53978 Augustus predicted protein sequence Tomato scaffold1825_contigs=2~44629-53978 Nucleoplasmin PF03066.10 g42563.t1 - 0.031 13.7 0.3 0.036 13.5 0.2 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:221611-227080 Augustus predicted protein sequence Tomato scaffold1361_contigs=6~221611-227080 DUF4407 PF14362.1 g17357.t1 - 0.081 11.8 1.3 0.087 11.7 0.9 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:37143-38166 Augustus predicted protein sequence Tomato scaffold704_contigs=10~37143-38166 HisG PF01634.13 g38262.t1 - 0.14 11.6 0 0.21 11.1 0 1.2 1 0 0 1 1 1 0 ATP phosphoribosyltransferase | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:767381-770808 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~767381-770808 Rap1_C PF11626.3 g80254.t1 - 0.0055 16.5 0 0.006 16.4 0 1.2 1 0 0 1 1 1 1 TRF2-interacting telomeric protein/Rap1 - C terminal domain | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:898951-899250 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~898951-899250 ATHILA PF03078.10 g54596.t1 - 0.0031 16.1 0 0.0034 16 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:138340-138714 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~138340-138714 DUF1199 PF06712.6 g50282.t1 - 0.043 13.6 0.2 0.086 12.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1563_contigs=5, transcript_loc=scaffold1563_contigs=5:67277-67767 Augustus predicted protein sequence Tomato scaffold1563_contigs=5~67277-67767 CAP_N PF01213.14 g30688.t1 - 0.056 12.7 1 0.064 12.5 0.7 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:75086-75520 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~75086-75520 Tropomyosin PF00261.15 g56155.t1 - 0.078 12 0.1 0.091 11.8 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:13573-13986 Augustus predicted protein sequence Tomato scaffold1792_contigs=8~13573-13986 NIR_SIR_ferr PF03460.12 g56888.t1 - 0.02 14.5 0 0.028 14 0 1.1 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:355625-355915 Augustus predicted protein sequence Tomato scaffold1821_contigs=10~355625-355915 Herpes_BLRF2 PF05812.7 g42997.t1 - 0.1 12.4 0.1 0.13 12 0 1.2 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:31243-31536 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~31243-31536 ATHILA PF03078.10 g331.t1 - 0.00019 20.1 0 0.27 9.7 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:17882-18400 Augustus predicted protein sequence Tomato scaffold18_contigs=2~17882-18400 zf-Sec23_Sec24 PF04810.10 g63172.t1 - 0.18 11.3 3.3 0.35 10.4 2.3 1.5 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:448668-448979 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~448668-448979 DUF2894 PF11445.3 g31582.t1 - 1.2 9.3 11 0.73 10 2.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold1079_contigs=2, transcript_loc=scaffold1079_contigs=2:37853-38971 Augustus predicted protein sequence Tomato scaffold1079_contigs=2~37853-38971 Brix PF04427.13 g56381.t1 - 0.0074 15.9 0 0.012 15.2 0 1.2 1 0 0 1 1 1 1 Brix domain | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:133045-134686 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~133045-134686 ERG2_Sigma1R PF04622.7 g4974.t1 - 0.061 12.5 0 0.13 11.5 0 1.5 2 0 0 2 2 2 0 ERG2 and Sigma1 receptor like protein | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:128630-129121 Augustus predicted protein sequence Tomato scaffold312_contigs=3~128630-129121 FbpA PF05833.6 g19086.t1 - 0.026 13 0 0.027 13 0 1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:76450-76878 Augustus predicted protein sequence Tomato scaffold744_contigs=4~76450-76878 Talin_middle PF09141.5 g56199.t1 - 0.064 12.9 0.1 0.092 12.4 0.1 1.3 1 0 0 1 1 1 0 Talin, middle domain | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:41202-41884 Augustus predicted protein sequence Tomato scaffold1793_contigs=8~41202-41884 TPR_7 PF13176.1 g1973.t1 - 0.15 11.9 0.5 0.32 10.9 0.4 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:84178-84804 Augustus predicted protein sequence Tomato scaffold221_contigs=3~84178-84804 YbjM PF11045.3 g83108.t1 - 0.011 15.4 0 0.014 15.1 0 1.1 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:193476-193751 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~193476-193751 DUF2505 PF10698.4 g66817.t1 - 0.14 11.6 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2505) | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:129528-129863 Augustus predicted protein sequence Tomato scaffold2170_contigs=8~129528-129863 zf-TFIIB PF13453.1 g48637.t1 - 0.017 14.3 0.1 0.045 12.9 0 1.8 1 0 0 1 1 1 0 Transcription factor zinc-finger | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:572194-572568 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~572194-572568 Nop14 PF04147.7 g74660.t1 - 0.0015 16.5 18.7 0.0019 16.2 13 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:313106-314260 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~313106-314260 Podoplanin PF05808.6 g38069.t1 - 0.011 15.2 1.5 0.014 14.9 1 1.1 1 0 0 1 1 1 0 Podoplanin | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:122270-122852 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~122270-122852 RVT_2 PF07727.9 g13024.t1 - 4.4E-010 38.9 1.3 0.00029 19.8 0.1 2.1 2 0 0 2 2 2 2 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold564_contigs=3, transcript_loc=scaffold564_contigs=3:13918-15000 Augustus predicted protein sequence Tomato scaffold564_contigs=3~13918-15000 DUF779 PF05610.6 g8671.t1 - 0.034 14.1 0 0.038 13.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF779) | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:433133-433570 Augustus predicted protein sequence Tomato scaffold429_contigs=9~433133-433570 Vir_act_alpha_C PF10400.4 g83715.t1 - 0.95 9.8 4.3 0.59 10.5 0.2 2.3 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1501497-1502444 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1501497-1502444 SAP PF02037.22 g78406.t1 - 0.094 12.2 1.2 0.17 11.4 0.9 1.5 1 0 0 1 1 1 0 SAP domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:152282-153787 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~152282-153787 Phage_30_8 PF06019.6 g59138.t1 - 0.085 12.5 0.2 0.29 10.8 0 1.9 2 0 0 2 2 2 0 Phage GP30.8 protein | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:540894-541548 Augustus predicted protein sequence Tomato scaffold1896_contigs=29~540894-541548 Peptidase_C48 PF02902.14 g40423.t1 - 0.00044 19.9 0.1 0.00044 19.9 0.1 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:150309-150994 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~150309-150994 RVT_3 PF13456.1 g41086.t1 - 0.0035 17 0.1 0.0048 16.6 0 1.3 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:522137-524945 Augustus predicted protein sequence Tomato scaffold1320_contigs=26~522137-524945 DBD_Tnp_Mut PF03108.10 g2608.t1 - 0.000000013 34.3 0 0.000000026 33.3 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:73482-76986 Augustus predicted protein sequence Tomato scaffold247_contigs=8~73482-76986 Ilar_coat PF01787.11 g25997.t1 - 0.067 12.7 0.1 0.079 12.5 0 1.1 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:39058-40612 Augustus predicted protein sequence Tomato scaffold942_contigs=10~39058-40612 Fungal_trans_2 PF11951.3 g17262.t1 - 0.097 11.2 0 0.1 11.1 0 1 1 0 0 1 1 1 0 Fungal specific transcription factor domain | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:159800-160165 Augustus predicted protein sequence Tomato scaffold701_contigs=5~159800-160165 Pox_A_type_inc PF04508.7 g61748.t1 - 1.7 8.6 5 7.7 6.5 0.9 2.7 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:9143-12727 Augustus predicted protein sequence Tomato scaffold1975_contigs=6~9143-12727 DUF3340 PF11818.3 g84999.t1 - 1.1 9.1 8.7 1.3 8.9 6 1.1 1 0 0 1 1 1 0 C-terminal domain of tail specific protease (DUF3340) | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:106645-107010 Augustus predicted protein sequence Tomato scaffold2786_contigs=1~106645-107010 DUF3953 PF13129.1 g74705.t1 - 0.33 10.6 4.4 0.49 10 3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3953) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:465227-465520 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~465227-465520 UBN2 PF14223.1 g70028.t1 - 0.035 13.9 0 0.077 12.7 0 1.6 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:276010-279931 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~276010-279931 DUF4407 PF14362.1 g12019.t1 - 0.07 12 0.3 0.085 11.7 0.2 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:128849-129136 Augustus predicted protein sequence Tomato scaffold535_contigs=8~128849-129136 DUF4521 PF15021.1 g45408.t1 - 0.09 12.3 0.1 0.11 12 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:162491-163600 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~162491-163600 ECH_C PF13766.1 g26108.t1 - 0.0057 16.7 1 0.051 13.7 0.7 2.1 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:48853-49714 Augustus predicted protein sequence Tomato scaffold943_contigs=4~48853-49714 OAD_gamma PF04277.8 g57013.t1 - 0.36 11.2 1.4 0.65 10.4 0.9 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:103498-104017 Augustus predicted protein sequence Tomato scaffold1824_contigs=4~103498-104017 DUF4283 PF14111.1 g8039.t1 - 0.099 11.7 0.1 3.6 6.6 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:20177-20828 Augustus predicted protein sequence Tomato scaffold416_contigs=9~20177-20828 MYT1 PF08474.6 g63627.t1 - 2 7.8 11.1 2.9 7.3 7.7 1.2 1 0 0 1 1 1 0 Myelin transcription factor 1 | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:769346-769714 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~769346-769714 G-gamma PF00631.17 g61709.t1 - 0.0056 16.3 0.1 0.013 15.2 0.1 1.6 2 0 0 2 2 2 1 GGL domain | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:198042-198326 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~198042-198326 SPOB_a PF14689.1 g47647.t1 - 0.033 13.7 0 0.068 12.7 0 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:29219-30287 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~29219-30287 UBN2 PF14223.1 g56933.t1 - 0.0025 17.5 0 0.043 13.6 0 1.9 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:15849-16133 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~15849-16133 ATHILA PF03078.10 g64714.t1 - 0.0019 16.8 0 0.0021 16.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:52914-53186 Augustus predicted protein sequence Tomato scaffold2090_contigs=6~52914-53186 RseA_C PF03873.8 g70685.t1 - 0.017 14.9 0 0.03 14.2 0 1.3 1 0 0 1 1 1 0 Anti sigma-E protein RseA, C-terminal domain | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:216971-217693 Augustus predicted protein sequence Tomato scaffold2345_contigs=7~216971-217693 DUF3493 PF11998.3 g13944.t1 - 0.37 10.7 1.5 0.37 10.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:631955-635489 Augustus predicted protein sequence Tomato scaffold582_contigs=8~631955-635489 Cep57_MT_bd PF06657.8 g23354.t1 - 0.016 15.1 1.5 0.016 15.1 1 2.1 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:64502-64783 Augustus predicted protein sequence Tomato scaffold858_contigs=4~64502-64783 HR1 PF02185.11 g22029.t1 - 0.051 13.3 0.6 0.092 12.4 0.4 1.4 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:656983-658235 Augustus predicted protein sequence Tomato scaffold817_contigs=11~656983-658235 YkuI_C PF10388.4 g27419.t1 - 0.097 12.3 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:32953-34561 Augustus predicted protein sequence Tomato scaffold979_contigs=3~32953-34561 ALIX_LYPXL_bnd PF13949.1 g36778.t1 - 0.045 12.7 0 0.057 12.3 0 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold1208_contigs=2, transcript_loc=scaffold1208_contigs=2:1-1283 Augustus predicted protein sequence Tomato scaffold1208_contigs=2~1-1283 zf-CCHC PF00098.18 g36977.t1 - 0.00011 21.9 5.1 0.00017 21.3 3.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:374695-374955 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~374695-374955 RasGAP_C PF03836.10 g46576.t1 - 0.0063 16.2 0.5 0.009 15.6 0.3 1.1 1 0 0 1 1 1 1 RasGAP C-terminus | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:517860-518324 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~517860-518324 Helicase_C PF00271.26 g22160.t1 - 0.046 13.5 0 0.054 13.3 0 1.1 1 0 0 1 1 1 0 Helicase conserved C-terminal domain | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:144442-148503 Augustus predicted protein sequence Tomato scaffold823_contigs=8~144442-148503 PSRT PF07636.6 g14244.t1 - 0.25 10.8 1.7 0.27 10.7 0.1 1.9 2 0 0 2 2 2 0 PSRT | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:490591-492444 Augustus predicted protein sequence Tomato scaffold586_contigs=6~490591-492444 Matrilin_ccoil PF10393.4 g87592.t1 - 0.03 13.6 0 0.055 12.8 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3370_contigs=1, transcript_loc=scaffold3370_contigs=1:2045-2985 Augustus predicted protein sequence Tomato scaffold3370_contigs=1~2045-2985 Selenoprotein_S PF06936.6 g48047.t1 - 0.3 10.5 2.1 0.38 10.2 1.5 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:475643-475977 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~475643-475977 DUF4582 PF15189.1 g66319.t1 - 0.081 12.1 0.3 9.9 5.3 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4582) | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:21626-22352 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~21626-22352 LexA_DNA_bind PF01726.11 g77164.t1 - 0.15 11.6 0.8 0.92 9.1 0.2 2.1 2 0 0 2 2 2 0 LexA DNA binding domain | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:269369-269701 Augustus predicted protein sequence Tomato scaffold2650_contigs=9~269369-269701 ATHILA PF03078.10 g28238.t1 - 0.000056 21.9 0.3 0.01 14.4 0 2.4 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:6295-9514 Augustus predicted protein sequence Tomato scaffold994_contigs=5~6295-9514 NAM-associated PF14303.1 g51397.t1 - 0.00018 21.8 2.6 0.00021 21.6 1.8 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:167624-167989 Augustus predicted protein sequence Tomato scaffold1613_contigs=9~167624-167989 DUF1395 PF07160.7 g71689.t1 - 0.11 11.9 0.9 4.2 6.7 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:136178-136936 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~136178-136936 DUF825 PF05695.7 g68657.t1 - 0.0065 13.9 0 0.0065 13.9 0 1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF825) | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:45121-47184 Augustus predicted protein sequence Tomato scaffold2223_contigs=8~45121-47184 DnaJ_CXXCXGXG PF00684.14 g64255.t1 - 0.0016 18.4 2.4 0.002 18.1 1.7 1.2 1 0 0 1 1 1 1 DnaJ central domain | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:181552-182657 Augustus predicted protein sequence Tomato scaffold2057_contigs=11~181552-182657 IL5 PF02025.10 g52421.t1 - 0.07 13.1 0.1 0.13 12.2 0 1.4 1 1 0 1 1 1 0 Interleukin 5 | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:9702-10748 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~9702-10748 CD99L2 PF12301.3 g78597.t1 - 0.0011 18.7 1.9 0.0015 18.2 1.3 1.2 1 0 0 1 1 1 1 CD99 antigen like protein 2 | Ref_seq=scaffold2672_contigs=4, transcript_loc=scaffold2672_contigs=4:21777-24265 Augustus predicted protein sequence Tomato scaffold2672_contigs=4~21777-24265 Peptidase_M85 PF13678.1 g4966.t1 - 0.028 13.7 0.1 0.045 13.1 0 1.2 1 0 0 1 1 1 0 NFkB-p65-degrading zinc protease | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:85756-89504 Augustus predicted protein sequence Tomato scaffold312_contigs=3~85756-89504 Alpha_E3_glycop PF01563.11 g54507.t1 - 0.11 12.2 0 0.21 11.4 0 1.4 1 0 0 1 1 1 0 Alphavirus E3 glycoprotein | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:83701-84135 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~83701-84135 DUF4283 PF14111.1 g24019.t1 - 0.00000059 28.6 0 0.0000025 26.6 0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:131082-131831 Augustus predicted protein sequence Tomato scaffold875_contigs=10~131082-131831 bPH_6 PF10756.4 g13335.t1 - 0.059 13.2 3.9 0.12 12.2 2.7 1.6 1 1 0 1 1 1 0 Bacterial PH domain | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:101235-101654 Augustus predicted protein sequence Tomato scaffold572_contigs=22~101235-101654 Ilar_coat PF01787.11 g68861.t1 - 0.023 14.2 0 0.026 14.1 0 1.2 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:204528-205429 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~204528-205429 UBN2 PF14223.1 g41638.t1 - 0.032 14 0.2 0.26 11 0 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:31015-31944 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~31015-31944 DUF1725 PF08333.6 g10076.t1 - 0.099 11.9 0.1 0.23 10.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:135458-135932 Augustus predicted protein sequence Tomato scaffold482_contigs=7~135458-135932 Tail_tube PF10618.4 g13660.t1 - 0.02 14.6 0 0.025 14.2 0 1.2 1 0 0 1 1 1 0 Phage tail tube protein | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:274526-275045 Augustus predicted protein sequence Tomato scaffold578_contigs=5~274526-275045 Nefa_Nip30_N PF10187.4 g44445.t1 - 1.7 8.8 8.8 13 5.9 0.2 2.5 2 0 0 2 2 2 0 N-terminal domain of NEFA-interacting nuclear protein NIP30 | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:247119-249426 Augustus predicted protein sequence Tomato scaffold1429_contigs=14~247119-249426 Levi_coat PF01819.12 g25448.t1 - 0.061 12.9 0.4 0.08 12.5 0.3 1.2 1 0 0 1 1 1 0 Levivirus coat protein | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:289025-289790 Augustus predicted protein sequence Tomato scaffold928_contigs=4~289025-289790 UBN2 PF14223.1 g21204.t1 - 0.00000017 31 0.1 0.00000021 30.7 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:84746-84997 Augustus predicted protein sequence Tomato scaffold795_contigs=8~84746-84997 Pterin_4a PF01329.14 g41943.t1 - 0.025 14.3 0.1 0.032 13.9 0.1 1.3 1 0 0 1 1 1 0 Pterin 4 alpha carbinolamine dehydratase | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:400930-401184 Augustus predicted protein sequence Tomato scaffold1345_contigs=14~400930-401184 Mito_fiss_reg PF05308.6 g36163.t1 - 2.4 7.4 10.1 3.2 7 7 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:14234-16005 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~14234-16005 HBS1_N PF08938.5 g21043.t1 - 0.029 14.4 0.1 0.037 14.1 0.1 1.2 1 0 0 1 1 1 0 HBS1 N-terminus | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:25237-25560 Augustus predicted protein sequence Tomato scaffold792_contigs=3~25237-25560 Toprim_C_rpt PF13368.1 g10475.t1 - 6.3 7.3 9.4 14 6.2 6.5 1.6 1 0 0 1 1 1 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:347682-348228 Augustus predicted protein sequence Tomato scaffold498_contigs=12~347682-348228 DUF4219 PF13961.1 g19027.t1 - 0.00015 21 0.1 0.00024 20.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:27814-28355 Augustus predicted protein sequence Tomato scaffold743_contigs=3~27814-28355 TOBE PF03459.12 g58995.t1 - 0.095 12.8 0.1 0.44 10.6 0 2.2 2 0 0 2 2 2 0 TOBE domain | Ref_seq=scaffold1887_contigs=1, transcript_loc=scaffold1887_contigs=1:14285-14752 Augustus predicted protein sequence Tomato scaffold1887_contigs=1~14285-14752 ATHILA PF03078.10 g41656.t1 - 0.047 12.2 0 0.063 11.8 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:84456-85793 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~84456-85793 DUF4219 PF13961.1 g8004.t1 - 0.0017 17.7 0 0.0029 16.9 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:266741-268052 Augustus predicted protein sequence Tomato scaffold413_contigs=6~266741-268052 DUF1170 PF06663.8 g7235.t1 - 0.071 13 0 0.11 12.3 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1170) | Ref_seq=scaffold390_contigs=8, transcript_loc=scaffold390_contigs=8:208609-208956 Augustus predicted protein sequence Tomato scaffold390_contigs=8~208609-208956 HrpB7 PF09486.5 g34888.t1 - 0.0014 18.5 0.4 0.0016 18.3 0.3 1.3 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:73153-73491 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~73153-73491 zf-BED PF02892.10 g9891.t1 - 0.000000049 32.6 0.5 0.000000091 31.7 0.3 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:54547-56733 Augustus predicted protein sequence Tomato scaffold478_contigs=9~54547-56733 DUF2771 PF10969.3 g18238.t1 - 0.015 14.6 0 0.015 14.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:853054-853317 Augustus predicted protein sequence Tomato scaffold720_contigs=9~853054-853317 Med12 PF09497.5 g44950.t1 - 0.045 13.7 0.1 0.3 11 0.1 2.2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:309230-309559 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~309230-309559 DUF1953 PF09196.5 g47235.t1 - 0.094 12.4 0.1 0.13 12 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1953) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:293939-294722 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~293939-294722 DUF3219 PF11514.3 g71816.t1 - 0.0056 16.5 0 0.018 14.9 0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3219) | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:80524-81378 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~80524-81378 EFF-AFF PF14884.1 g55305.t1 - 0.16 10 0 0.18 9.8 0 1 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:711837-714469 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~711837-714469 DUF3664 PF12406.3 g87142.t1 - 0.06 13.9 2.1 0.11 13.1 1.4 1.4 1 0 0 1 1 1 0 Surface protein | Ref_seq=scaffold2943_contigs=1, transcript_loc=scaffold2943_contigs=1:5715-5984 Augustus predicted protein sequence Tomato scaffold2943_contigs=1~5715-5984 DUF4211 PF13926.1 g85261.t1 - 0.00044 19.6 0.1 0.00069 19 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4211) | Ref_seq=scaffold2796_contigs=1, transcript_loc=scaffold2796_contigs=1:67798-68328 Augustus predicted protein sequence Tomato scaffold2796_contigs=1~67798-68328 MmoB_DmpM PF02406.12 g76834.t1 - 0.00036 20.4 0 0.0053 16.7 0 2.5 3 0 0 3 3 3 1 MmoB/DmpM family | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:33079-38432 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~33079-38432 Lipase_bact_N PF12262.3 g13011.t1 - 0.028 13.6 0 0.055 12.6 0 1.5 1 1 0 1 1 1 0 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:110236-110760 Augustus predicted protein sequence Tomato scaffold562_contigs=3~110236-110760 HATPase_c PF02518.21 g42796.t1 - 0.035 13.8 0 3.6 7.3 0 2.1 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:34666-34947 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~34666-34947 NESP55 PF06390.7 g63843.t1 - 0.11 11.7 2.4 0.18 11.1 1.6 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:340936-341439 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~340936-341439 SnoaL PF07366.7 g4122.t1 - 0.11 12 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:45135-45365 Augustus predicted protein sequence Tomato scaffold293_contigs=5~45135-45365 RNF111_N PF15303.1 g32331.t1 - 0.11 12 0.4 0.15 11.5 0.3 1.1 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase Arkadia N-terminus | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:201782-202270 Augustus predicted protein sequence Tomato scaffold1103_contigs=14~201782-202270 DUF1347 PF07079.6 g60468.t1 - 0.12 10.5 0 0.13 10.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:247375-247836 Augustus predicted protein sequence Tomato scaffold1951_contigs=6~247375-247836 Macoilin PF09726.4 g72111.t1 - 2.7 6.1 12.3 0.087 11 4 1.6 2 0 0 2 2 2 0 Transmembrane protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:136416-138446 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~136416-138446 Med21 PF11221.3 g74031.t1 - 0.73 9.7 3.6 0.49 10.3 1.2 1.6 2 0 0 2 2 2 0 Subunit 21 of Mediator complex | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:219467-221169 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~219467-221169 gag-asp_proteas PF13975.1 g62709.t1 - 0.079 12.7 0 6.1 6.7 0 2.4 1 1 1 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:464271-465380 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~464271-465380 RVP_2 PF08284.6 g56924.t1 - 5.2E-010 39.3 0.1 5.7E-010 39.2 0 1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:88578-88829 Augustus predicted protein sequence Tomato scaffold1822_contigs=5~88578-88829 Rep_Org_C PF06926.6 g61882.t1 - 0.11 12.5 1.3 0.23 11.5 0.5 1.8 1 1 0 1 1 1 0 Putative replisome organiser protein C-terminus | Ref_seq=scaffold1979_contigs=3, transcript_loc=scaffold1979_contigs=3:68635-69279 Augustus predicted protein sequence Tomato scaffold1979_contigs=3~68635-69279 DUF4201 PF13870.1 g21560.t1 - 0.002 17.6 7.7 0.014 14.8 0.9 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:55953-57342 Augustus predicted protein sequence Tomato scaffold801_contigs=2~55953-57342 ATHILA PF03078.10 g85038.t1 - 0.00061 18.4 0 0.28 9.7 0 2.7 1 1 2 3 3 3 2 ATHILA ORF-1 family | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:70350-71351 Augustus predicted protein sequence Tomato scaffold2788_contigs=1~70350-71351 Mpp10 PF04006.7 g75473.t1 - 0.24 9.7 8.7 0.24 9.7 6 1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:65623-66051 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~65623-66051 DUF3934 PF13070.1 g77502.t1 - 0.062 13.5 2.7 0.095 12.9 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3934) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:205653-205979 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~205653-205979 DUF4631 PF15450.1 g80512.t1 - 0.0015 16.9 1.7 0.0016 16.7 1.2 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4631) | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:82209-82886 Augustus predicted protein sequence Tomato scaffold2712_contigs=5~82209-82886 RR_TM4-6 PF06459.7 g60322.t1 - 0.19 11.6 1.4 0.24 11.2 1 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:172439-173180 Augustus predicted protein sequence Tomato scaffold1948_contigs=36~172439-173180 DSL PF01414.14 g79493.t1 - 0.075 13 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Delta serrate ligand | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:14644-15000 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~14644-15000 AAA_16 PF13191.1 g31134.t1 - 0.0044 17 0 0.0068 16.4 0 1.3 1 0 0 1 1 1 1 AAA ATPase domain | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:49146-51006 Augustus predicted protein sequence Tomato scaffold1061_contigs=9~49146-51006 HALZ PF02183.13 g70289.t1 - 0.0058 16.3 7.2 0.081 12.6 0.6 3 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:359811-360515 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~359811-360515 DUF972 PF06156.8 g15975.t1 - 0.37 11.1 2.4 1.2 9.4 1.2 2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:438054-440032 Augustus predicted protein sequence Tomato scaffold651_contigs=13~438054-440032 Tox-HNH-EHHH PF15657.1 g6245.t1 - 0.074 13.2 0.8 16 5.7 0 2.5 3 0 0 3 3 3 0 HNH/Endo VII superfamily nuclease toxins | Ref_seq=scaffold356_contigs=12, transcript_loc=scaffold356_contigs=12:1688-3159 Augustus predicted protein sequence Tomato scaffold356_contigs=12~1688-3159 EII-Sor PF03609.9 g17488.t1 - 0.14 11.3 0 0.19 10.9 0 1.1 1 0 0 1 1 1 0 PTS system sorbose-specific iic component | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:185543-186898 Augustus predicted protein sequence Tomato scaffold707_contigs=5~185543-186898 TrbE PF11100.3 g41414.t1 - 0.06 13.2 0.3 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:71186-72093 Augustus predicted protein sequence Tomato scaffold1332_contigs=3~71186-72093 DUF674 PF05056.7 g73549.t1 - 0.081 11.5 0 0.088 11.4 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF674) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:14756-15204 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~14756-15204 FAM176 PF14851.1 g52169.t1 - 0.032 13.9 0.6 0.051 13.2 0.4 1.3 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:293252-293698 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~293252-293698 BPL_LplA_LipB PF03099.14 g35014.t1 - 0.071 13.1 0 5.5 7 0 2.2 2 0 0 2 2 2 0 Biotin/lipoate A/B protein ligase family | Ref_seq=scaffold1172_contigs=7, transcript_loc=scaffold1172_contigs=7:140387-140731 Augustus predicted protein sequence Tomato scaffold1172_contigs=7~140387-140731 Phage_tail_2 PF06199.6 g2205.t1 - 0.13 12.2 0.6 0.16 12 0.5 1.1 1 0 0 1 1 1 0 Phage major tail protein 2 | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:204487-204819 Augustus predicted protein sequence Tomato scaffold228_contigs=4~204487-204819 Apc13p PF05839.6 g19884.t1 - 0.089 12.7 8.3 0.11 12.4 1.8 2.4 1 1 1 2 2 2 0 Apc13p protein | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:201515-202070 Augustus predicted protein sequence Tomato scaffold760_contigs=13~201515-202070 P2X_receptor PF00864.14 g23987.t1 - 0.029 13 0 0.035 12.7 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:18612-19136 Augustus predicted protein sequence Tomato scaffold875_contigs=10~18612-19136 Toxin-JAB1 PF15659.1 g57472.t1 - 0.03 14.2 0 0.038 13.8 0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:183805-184065 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~183805-184065 DUF3778 PF12620.3 g517.t1 - 0.76 9.3 5 7.4 6.2 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:78175-78597 Augustus predicted protein sequence Tomato scaffold51_contigs=2~78175-78597 SEC-C PF02810.10 g75635.t1 - 0.025 14 2 5.6 6.5 0.1 2.5 2 0 0 2 2 2 0 SEC-C motif | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:148157-151139 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~148157-151139 MHCassoc_trimer PF08831.5 g77904.t1 - 0.023 14.5 0.6 0.044 13.6 0.4 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:797018-797308 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~797018-797308 Transglut_C PF00927.17 g44881.t1 - 0.08 12.9 0 11 6 0 2.1 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:15770-16129 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~15770-16129 Varsurf_PPLC PF03490.8 g23049.t1 - 0.041 13.5 0 0.078 12.6 0 1.4 1 0 0 1 1 1 0 Variant-surface-glycoprotein phospholipase C | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:197326-197856 Augustus predicted protein sequence Tomato scaffold846_contigs=10~197326-197856 Spc7 PF08317.6 g11030.t1 - 0.038 12.6 1.7 0.056 12 1.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:17566-18502 Augustus predicted protein sequence Tomato scaffold512_contigs=2~17566-18502 MHCassoc_trimer PF08831.5 g49109.t1 - 0.13 12 0.8 0.31 10.9 0.5 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:55308-56099 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~55308-56099 DUF4219 PF13961.1 g23281.t1 - 0.00033 20 0.8 0.0005 19.4 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:23470-23817 Augustus predicted protein sequence Tomato scaffold855_contigs=1~23470-23817 Gln-synt_C PF00120.19 g17985.t1 - 0.05 12.7 0.1 0.059 12.5 0.1 1.1 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:116609-118565 Augustus predicted protein sequence Tomato scaffold720_contigs=9~116609-118565 Wx5_PLAF3D7 PF09688.5 g40542.t1 - 0.0019 18.2 1.7 0.002 18 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (Wx5_PLAF3D7) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:34453-34761 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~34453-34761 BNIP3 PF06553.7 g64724.t1 - 0.63 9.3 5.6 0.77 9.1 3.9 1.1 1 0 0 1 1 1 0 BNIP3 | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:77519-78214 Augustus predicted protein sequence Tomato scaffold2090_contigs=6~77519-78214 VanY PF02557.12 g37712.t1 - 0.051 13.4 0 2.3 8 0 2.1 1 1 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:23298-23796 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~23298-23796 PAXIP1_C PF15364.1 g15904.t1 - 0.0004 20.3 6.2 0.00057 19.8 4.3 1.2 1 0 0 1 1 1 1 PAXIP1-associated-protein-1 C term PTIP binding protein | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:95224-99336 Augustus predicted protein sequence Tomato scaffold651_contigs=13~95224-99336 PMD PF10536.4 g5986.t1 - 0.0033 16.4 0.1 0.0039 16.2 0.1 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:433267-434983 Augustus predicted protein sequence Tomato scaffold344_contigs=14~433267-434983 DUF4290 PF14123.1 g14959.t1 - 0.1 11.7 0.4 0.29 10.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:68709-69002 Augustus predicted protein sequence Tomato scaffold614_contigs=10~68709-69002 CALCOCO1 PF07888.6 g62233.t1 - 0.00011 20.6 5.8 0.00014 20.2 4 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:218362-222508 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~218362-222508 ATHILA PF03078.10 g68684.t1 - 0.00017 20.3 0 0.00024 19.8 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:96573-100087 Augustus predicted protein sequence Tomato scaffold2224_contigs=19~96573-100087 Vint PF14623.1 g62472.t1 - 0.08 12.4 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 Hint-domain | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:239373-239744 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~239373-239744 Spore_GerQ PF09671.5 g2223.t1 - 0.015 14.9 0 2.5 7.7 0 2.2 2 0 0 2 2 2 0 Spore coat protein (Spore_GerQ) | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:17153-18165 Augustus predicted protein sequence Tomato scaffold230_contigs=2~17153-18165 RecX PF02631.11 g71152.t1 - 0.063 13.4 0.7 8.5 6.6 0 2.3 2 0 0 2 2 2 0 RecX family | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:1-830 Augustus predicted protein sequence Tomato scaffold2357_contigs=7~1-830 zf-CCHC_4 PF14392.1 g53109.t1 - 0.00026 20.6 0.1 0.0005 19.6 0 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:1189-2324 Augustus predicted protein sequence Tomato scaffold1675_contigs=9~1189-2324 DUF809 PF05663.6 g57891.t1 - 1.4 8.8 4.7 11 5.9 3.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF809) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:244762-245058 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~244762-245058 EFP_N PF08207.7 g50401.t1 - 0.028 14.2 0 0.052 13.4 0 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:2083-2421 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~2083-2421 nec1 PF10379.4 g60826.t1 - 0.087 12 1.1 0.95 8.7 0.2 2 1 1 1 2 2 2 0 Virulence protein nec1 | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:479162-479545 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~479162-479545 HOOK PF05622.7 g43078.t1 - 0.021 12.6 7.1 0.024 12.4 4.9 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:74091-74780 Augustus predicted protein sequence Tomato scaffold1381_contigs=7~74091-74780 DBD_Tnp_Mut PF03108.10 g47603.t1 - 0.0000003 29.9 0.1 0.00000046 29.3 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:735228-736800 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~735228-736800 Lebercilin PF15619.1 g81233.t1 - 0.01 15.2 4.1 0.014 14.8 2.8 1.2 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:405150-406859 Augustus predicted protein sequence Tomato scaffold2724_contigs=11~405150-406859 T4_Gp59_C PF08994.5 g77946.t1 - 0.14 12.3 0 0.22 11.7 0 1.2 1 0 0 1 1 1 0 T4 gene Gp59 loader of gp41 DNA helicase C-term | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:35739-36554 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~35739-36554 CCDC92 PF14916.1 g8356.t1 - 0.44 10.1 2.7 2.2 7.9 0.5 2.3 2 0 0 2 2 2 0 Coiled-coil domain of unknown function | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:475260-476494 Augustus predicted protein sequence Tomato scaffold423_contigs=9~475260-476494 zf-CCHC PF00098.18 g29823.t1 - 0.000069 22.5 6.3 0.00012 21.8 4.4 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:199583-200872 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~199583-200872 Casc1 PF12366.3 g19075.t1 - 0.021 14.3 1.1 0.025 14 0.8 1.1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:42674-44167 Augustus predicted protein sequence Tomato scaffold744_contigs=4~42674-44167 DUF3899 PF13038.1 g59472.t1 - 0.0045 17.1 0.6 0.0066 16.5 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3899) | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:9686-11272 Augustus predicted protein sequence Tomato scaffold1925_contigs=8~9686-11272 Trypan_PARP PF05887.6 g43725.t1 - 0.0002 21.1 6.6 0.00031 20.5 4.6 1.2 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:161182-163207 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~161182-163207 PEX11 PF05648.9 g32137.t1 - 0.071 12.3 0 0.095 11.9 0 1.1 1 0 0 1 1 1 0 Peroxisomal biogenesis factor 11 (PEX11) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:505876-506247 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~505876-506247 VASP_tetra PF08776.6 g68890.t1 - 0.14 11.4 0.2 0.27 10.5 0.1 1.4 1 0 0 1 1 1 0 VASP tetramerisation domain | Ref_seq=scaffold2234_contigs=2, transcript_loc=scaffold2234_contigs=2:8425-8905 Augustus predicted protein sequence Tomato scaffold2234_contigs=2~8425-8905 Sensor PF13796.1 g449.t1 - 1.8 8.1 7.6 2.1 7.9 5.3 1.1 1 0 0 1 1 1 0 Putative sensor | Ref_seq=scaffold40_contigs=3, transcript_loc=scaffold40_contigs=3:14831-17603 Augustus predicted protein sequence Tomato scaffold40_contigs=3~14831-17603 zf-CCHC PF00098.18 g83099.t1 - 0.000093 22.1 0.8 0.00016 21.4 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:174101-174622 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~174101-174622 Tmemb_170 PF10190.4 g69224.t1 - 1.4 8.9 15.2 1.3 9 5.7 2.5 1 1 1 2 2 2 0 Putative transmembrane protein 170 | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:95148-96583 Augustus predicted protein sequence Tomato scaffold2263_contigs=12~95148-96583 Gly-rich_Ago1 PF12764.2 g33065.t1 - 0.2 12.3 1.6 0.24 12 1.1 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:1-182 Augustus predicted protein sequence Tomato scaffold1112_contigs=5~1-182 DUF2577 PF10844.3 g26856.t1 - 0.1 12.6 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2577) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:217594-218061 Augustus predicted protein sequence Tomato scaffold961_contigs=8~217594-218061 Usg PF06233.7 g525.t1 - 0.029 14.2 0.1 0.039 13.8 0 1.2 1 0 0 1 1 1 0 Usg-like family | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:94237-96444 Augustus predicted protein sequence Tomato scaffold51_contigs=2~94237-96444 DUF3987 PF13148.1 g52547.t1 - 0.049 12.1 2.5 0.068 11.7 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:392864-393768 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~392864-393768 ATHILA PF03078.10 g49331.t1 - 6E-011 41.5 0.1 6.2E-011 41.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:68687-69133 Augustus predicted protein sequence Tomato scaffold1535_contigs=9~68687-69133 DUF695 PF05117.7 g71988.t1 - 0.018 14.9 0.2 0.021 14.7 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF695) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:561565-561987 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~561565-561987 CAF-1_p150 PF11600.3 g48228.t1 - 0.042 13.2 33.3 0.047 13 23.1 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:47596-48000 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~47596-48000 GerPB PF10803.3 g80363.t1 - 0.026 14.2 0.1 0.039 13.7 0.1 1.2 1 0 0 1 1 1 0 Spore germination GerPB | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:53227-53773 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~53227-53773 BofC_C PF08955.5 g15187.t1 - 0.034 14.1 0.5 3.2 7.8 0.3 2.4 2 0 0 2 2 2 0 BofC C-terminal domain | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:88659-90773 Augustus predicted protein sequence Tomato scaffold621_contigs=9~88659-90773 DUF1694 PF07997.6 g79207.t1 - 0.026 14.4 1.2 6.6 6.6 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1694) | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:65180-72419 Augustus predicted protein sequence Tomato scaffold2686_contigs=11~65180-72419 DUF1985 PF09331.6 g32138.t1 - 1.1E-009 38.2 0 1.5E-009 37.8 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:515589-519046 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~515589-519046 CLU_N PF15044.1 g28373.t1 - 0.2 11.8 1.6 0.26 11.4 0.6 1.6 2 1 0 2 2 2 0 Mitochondrial function, CLU-N-term | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:61614-61985 Augustus predicted protein sequence Tomato scaffold999_contigs=6~61614-61985 DUF3947 PF13135.1 g24942.t1 - 1.6 8.9 8 0.71 10.1 2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3947) | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:19368-19781 Augustus predicted protein sequence Tomato scaffold907_contigs=7~19368-19781 Tht1 PF04163.7 g51908.t1 - 0.039 12.3 0.1 0.04 12.3 0.1 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:59178-59489 Augustus predicted protein sequence Tomato scaffold1626_contigs=2~59178-59489 V_ATPase_I PF01496.14 g24382.t1 - 0.032 12.1 3.2 0.037 11.9 2.2 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:402398-403426 Augustus predicted protein sequence Tomato scaffold880_contigs=9~402398-403426 Trypan_PARP PF05887.6 g19569.t1 - 7.6 6.3 13.2 2.5 7.9 2.4 2.6 3 0 0 3 3 3 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:68741-71326 Augustus predicted protein sequence Tomato scaffold756_contigs=8~68741-71326 KRTAP PF11759.3 g70322.t1 - 0.056 13.7 2 0.081 13.1 1.4 1.2 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:495440-495709 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~495440-495709 RepA1_leader PF08048.7 g17635.t1 - 6.8 6.8 5.5 3.7 7.6 1.4 2.1 2 0 0 2 2 2 0 Tap RepA1 leader peptide | Ref_seq=scaffold712_contigs=6, transcript_loc=scaffold712_contigs=6:155-562 Augustus predicted protein sequence Tomato scaffold712_contigs=6~155-562 zf-BED PF02892.10 g81954.t1 - 0.0058 16.3 2.6 0.0058 16.3 1.8 1.9 2 1 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1605875-1606458 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~1605875-1606458 RVT_3 PF13456.1 g44224.t1 - 0.0022 17.7 0 0.004 16.8 0 1.5 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1419_contigs=9, transcript_loc=scaffold1419_contigs=9:56487-56894 Augustus predicted protein sequence Tomato scaffold1419_contigs=9~56487-56894 Seryl_tRNA_N PF02403.17 g9198.t1 - 0.14 12.1 6.3 0.26 11.3 4.4 1.5 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:43939-44630 Augustus predicted protein sequence Tomato scaffold449_contigs=4~43939-44630 CppA_C PF14507.1 g45026.t1 - 0.019 15.1 0.1 0.033 14.3 0.1 1.4 1 1 0 1 1 1 0 CppA C-terminal | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:572343-572654 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~572343-572654 TruB_C PF09142.6 g21300.t1 - 0.17 11.5 2.7 0.16 11.6 0.6 1.9 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:78119-78367 Augustus predicted protein sequence Tomato scaffold797_contigs=11~78119-78367 UBN2_2 PF14227.1 g18785.t1 - 0.1 12.1 0 0.19 11.3 0 1.5 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:472131-475561 Augustus predicted protein sequence Tomato scaffold731_contigs=13~472131-475561 DUF3394 PF11874.3 g63114.t1 - 0.0029 17.1 0.5 0.0034 16.9 0.3 1 1 0 0 1 1 1 1 Domain of unknown function (DUF3394) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:218294-219760 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~218294-219760 DUF4472 PF14739.1 g3401.t1 - 0.084 13.3 2 0.11 12.9 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:264561-264863 Augustus predicted protein sequence Tomato scaffold270_contigs=10~264561-264863 DUF4318 PF14201.1 g1325.t1 - 0.052 13.3 0.3 7.4 6.4 0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4318) | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:87931-92889 Augustus predicted protein sequence Tomato scaffold197_contigs=2~87931-92889 RRF PF01765.14 g30476.t1 - 0.0093 15.4 0.5 0.013 14.9 0.3 1.3 1 1 0 1 1 1 1 Ribosome recycling factor | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:10980-11387 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~10980-11387 Mito_fiss_reg PF05308.6 g6879.t1 - 2.4 7.4 5.9 2.4 7.4 4.1 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:261296-261619 Augustus predicted protein sequence Tomato scaffold384_contigs=11~261296-261619 ATHILA PF03078.10 g21990.t1 - 0.000045 22.2 0.2 0.024 13.2 0 2.2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:479884-483806 Augustus predicted protein sequence Tomato scaffold817_contigs=11~479884-483806 DUF4048 PF13257.1 g74464.t1 - 0.02 14.5 0.2 0.024 14.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4048) | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:18132-19220 Augustus predicted protein sequence Tomato scaffold2547_contigs=8~18132-19220 DUF506 PF04720.7 g65147.t1 - 0.022 14.3 0.9 0.022 14.3 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF506) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:64172-67566 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~64172-67566 DUF2956 PF11169.3 g87426.t1 - 0.015 15.2 0.1 0.031 14.2 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) | Ref_seq=scaffold3064_contigs=1, transcript_loc=scaffold3064_contigs=1:878-1763 Augustus predicted protein sequence Tomato scaffold3064_contigs=1~878-1763 RVT_1 PF00078.22 g61858.t1 - 0.000081 22 0 0.00011 21.6 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:92918-100123 Augustus predicted protein sequence Tomato scaffold1978_contigs=4~92918-100123 PTS_EIIA_2 PF00359.17 g48830.t1 - 0.042 13.5 0 0.057 13.1 0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:18331-18591 Augustus predicted protein sequence Tomato scaffold1509_contigs=13~18331-18591 DUF912 PF06024.7 g32972.t1 - 0.0056 16.7 0 0.0068 16.4 0 1.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF912) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:591947-592270 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~591947-592270 DUF1908 PF08926.6 g64004.t1 - 0.12 11.1 0.2 0.14 10.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:47225-47464 Augustus predicted protein sequence Tomato scaffold2049_contigs=3~47225-47464 PROL5-SMR PF15621.1 g84708.t1 - 0.14 12.5 4.2 0.25 11.8 2.9 1.3 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:114823-117063 Augustus predicted protein sequence Tomato scaffold2777_contigs=1~114823-117063 NMD3 PF04981.8 g20253.t1 - 0.4 9.7 4.2 1.7 7.6 0 2.4 3 0 0 3 3 3 0 NMD3 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:463893-470601 Augustus predicted protein sequence Tomato scaffold768_contigs=4~463893-470601 DBD_Tnp_Mut PF03108.10 g25038.t1 - 0.0019 17.7 0.2 0.0043 16.6 0.1 1.7 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:158966-159340 Augustus predicted protein sequence Tomato scaffold909_contigs=6~158966-159340 Nuc_recep-AF1 PF11825.3 g56210.t1 - 0.034 14 7.5 3.4 7.6 0.3 3.8 1 1 3 4 4 4 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:90814-91434 Augustus predicted protein sequence Tomato scaffold1793_contigs=8~90814-91434 DHquinase_II PF01220.14 g1070.t1 - 0.11 11.7 0.5 0.22 10.8 0.3 1.6 1 1 1 2 2 2 0 Dehydroquinase class II | Ref_seq=scaffold188_contigs=1, transcript_loc=scaffold188_contigs=1:1571-2969 Augustus predicted protein sequence Tomato scaffold188_contigs=1~1571-2969 HAMP PF00672.20 g60703.t1 - 0.13 12.4 0.4 0.16 12.2 0.2 1.2 1 0 0 1 1 1 0 HAMP domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:29261-29551 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~29261-29551 zf-4CXXC_R1 PF10497.4 g75666.t1 - 0.09 12.9 0.2 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:31325-31648 Augustus predicted protein sequence Tomato scaffold2606_contigs=15~31325-31648 Pox_Ag35 PF03286.9 g48500.t1 - 0.13 11.7 3.5 0.2 11.1 2.4 1.3 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:111581-112704 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~111581-112704 DUF1643 PF07799.7 g18298.t1 - 0.064 12.9 2.4 4.9 6.8 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1643) | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:323274-323870 Augustus predicted protein sequence Tomato scaffold721_contigs=12~323274-323870 Med17 PF10156.4 g65806.t1 - 0.1 10.8 0.4 0.11 10.6 0.3 1 1 0 0 1 1 1 0 Subunit 17 of Mediator complex | Ref_seq=scaffold2140_contigs=3, transcript_loc=scaffold2140_contigs=3:54243-59544 Augustus predicted protein sequence Tomato scaffold2140_contigs=3~54243-59544 NADH-u_ox-rdase PF10785.4 g3558.t1 - 0.032 14.4 0.1 0.17 12.1 0 2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:22958-24155 Augustus predicted protein sequence Tomato scaffold278_contigs=5~22958-24155 CDC45 PF02724.9 g518.t1 - 0.037 12 17.5 0.041 11.9 12.1 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:81642-84224 Augustus predicted protein sequence Tomato scaffold51_contigs=2~81642-84224 NUC129 PF08157.6 g87914.t1 - 0.23 11.4 0.8 0.71 9.8 0.1 1.9 2 0 0 2 2 2 0 NUC129 domain | Ref_seq=scaffold4849_contigs=1, transcript_loc=scaffold4849_contigs=1:50-355 Augustus predicted protein sequence Tomato scaffold4849_contigs=1~50-355 Cut8_N PF14482.1 g80044.t1 - 0.017 15 1.1 0.04 13.9 0.7 1.8 1 1 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:40930-41217 Augustus predicted protein sequence Tomato scaffold2706_contigs=4~40930-41217 CAF-1_p150 PF11600.3 g68117.t1 - 0.00052 19.4 29.3 0.00057 19.3 20.3 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:525680-526078 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~525680-526078 PNRC PF15365.1 g86141.t1 - 0.011 15.6 1.2 0.011 15.6 0.8 1.7 1 1 1 2 2 2 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:4214-5453 Augustus predicted protein sequence Tomato scaffold2839_contigs=1~4214-5453 CAP_N PF01213.14 g33182.t1 - 0.3 10.3 8.3 0.69 9.1 5.8 1.5 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:22880-37082 Augustus predicted protein sequence Tomato scaffold1116_contigs=2~22880-37082 DUF2413 PF10310.4 g27540.t1 - 1 8 6.3 1.3 7.7 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:475906-476625 Augustus predicted protein sequence Tomato scaffold980_contigs=13~475906-476625 DUF3925 PF13063.1 g8889.t1 - 0.24 11.4 1.4 0.6 10.1 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3925) | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:130090-130644 Augustus predicted protein sequence Tomato scaffold442_contigs=14~130090-130644 ATHILA PF03078.10 g78446.t1 - 0.0000027 26.2 0 0.0000036 25.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:271051-272766 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~271051-272766 zf-RING_UBOX PF13445.1 g68833.t1 - 0.02 14.6 0.1 0.06 13 0 1.8 2 0 0 2 2 2 0 RING-type zinc-finger | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:89729-90255 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~89729-90255 DUF1465 PF07323.7 g52198.t1 - 0.4 10.2 5.2 0.31 10.5 2.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1465) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:30357-32199 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~30357-32199 Chlor_dismutase PF06778.7 g75769.t1 - 0.014 15 0 5.3 6.6 0 2.1 2 0 0 2 2 2 0 Chlorite dismutase | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:58818-59861 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~58818-59861 Glyco_hydro_77 PF02446.12 g86608.t1 - 0.079 11.5 0.1 0.097 11.2 0 1.1 1 0 0 1 1 1 0 4-alpha-glucanotransferase | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:17493-17888 Augustus predicted protein sequence Tomato scaffold2876_contigs=1~17493-17888 Mst1_SARAH PF11629.3 g74657.t1 - 0.025 14.4 0.3 0.045 13.5 0.2 1.4 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:295177-298950 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~295177-298950 UNC119_bdg PF15435.1 g526.t1 - 0.13 11.6 0 0.16 11.2 0 1.1 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:96485-96802 Augustus predicted protein sequence Tomato scaffold51_contigs=2~96485-96802 Pheromone PF08015.6 g4151.t1 - 0.44 11.4 2.3 1.5 9.6 0.5 2.2 1 1 1 2 2 2 0 Fungal mating-type pheromone | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:140749-141437 Augustus predicted protein sequence Tomato scaffold293_contigs=5~140749-141437 Arch_fla_DE PF04659.8 g70763.t1 - 0.09 12.5 0 0.14 12 0 1.2 1 0 0 1 1 1 0 Archaeal flagella protein | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:43690-44034 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~43690-44034 MtrG PF04210.8 g64169.t1 - 0.2 11.3 1.1 3.1 7.5 0 2.7 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:331758-332102 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~331758-332102 Sirohm_synth_C PF14823.1 g892.t1 - 0.037 13.3 0.4 0.059 12.6 0.3 1.3 1 0 0 1 1 1 0 Sirohaem biosynthesis protein C-terminal | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:5499-5801 Augustus predicted protein sequence Tomato scaffold180_contigs=3~5499-5801 U1snRNP70_N PF12220.3 g20707.t1 - 0.084 13.2 3.5 0.2 12 2.5 1.6 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:63567-64361 Augustus predicted protein sequence Tomato scaffold779_contigs=3~63567-64361 DUF730 PF05325.6 g74128.t1 - 0.11 12.2 0.1 0.17 11.7 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF730) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:35660-36117 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~35660-36117 SOG2 PF10428.4 g23705.t1 - 0.098 11.2 0.1 0.12 10.9 0.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:92548-92907 Augustus predicted protein sequence Tomato scaffold865_contigs=7~92548-92907 GluR_Homer-bdg PF10606.4 g87452.t1 - 0.04 13.7 0 0.046 13.6 0 1.1 1 0 0 1 1 1 0 Homer-binding domain of metabotropic glutamate receptor | Ref_seq=scaffold3098_contigs=1, transcript_loc=scaffold3098_contigs=1:1-132 Augustus predicted protein sequence Tomato scaffold3098_contigs=1~1-132 EPO_TPO PF00758.13 g39303.t1 - 0.016 14.8 0 0.033 13.8 0 1.5 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:332254-332718 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~332254-332718 PEARLI-4 PF05278.7 g38731.t1 - 0.15 11.3 0.4 0.18 11.1 0.3 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:174838-175304 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~174838-175304 UBN2 PF14223.1 g20557.t1 - 0.12 12.1 0.3 0.21 11.4 0.2 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1109182-1118712 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1109182-1118712 zf-CCHC PF00098.18 g22025.t1 - 0.12 12.3 5.9 0.21 11.5 4.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:649699-650477 Augustus predicted protein sequence Tomato scaffold817_contigs=11~649699-650477 Ribosomal_60s PF00428.14 g59937.t1 - 0.16 12.4 7.6 0.28 11.6 5.2 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:326153-327173 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~326153-327173 ATHILA PF03078.10 g14004.t1 - 0.0043 15.6 0 0.006 15.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:185272-186961 Augustus predicted protein sequence Tomato scaffold583_contigs=2~185272-186961 T2SN PF01203.14 g61330.t1 - 0.28 10.7 1.9 0.93 9 1 1.8 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein N | Ref_seq=scaffold1965_contigs=7, transcript_loc=scaffold1965_contigs=7:46003-46224 Augustus predicted protein sequence Tomato scaffold1965_contigs=7~46003-46224 DUF4333 PF14230.1 g47902.t1 - 0.039 13.9 0 0.053 13.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4333) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:34756-35060 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~34756-35060 BC10 PF06726.7 g75715.t1 - 0.28 11.2 1.8 22 5.1 0.1 2.4 2 0 0 2 2 2 0 Bladder cancer-related protein BC10 | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:57393-58313 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~57393-58313 DinI PF06183.8 g85826.t1 - 0.033 14.1 0 0.08 12.9 0 1.6 1 0 0 1 1 1 0 DinI-like family | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:23055-25479 Augustus predicted protein sequence Tomato scaffold2823_contigs=1~23055-25479 Red1 PF07964.6 g42058.t1 - 0.09 10.9 3.7 0.12 10.4 2.6 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:340641-341953 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~340641-341953 zf-CCHC_4 PF14392.1 g55288.t1 - 0.28 10.8 3.1 0.57 9.8 2.1 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:651540-657154 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~651540-657154 DUF4407 PF14362.1 g51255.t1 - 3.7 6.4 5.9 3.7 6.4 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:220036-220341 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~220036-220341 Cloacin_immun PF03513.9 g19500.t1 - 0.094 12.7 0 0.13 12.2 0 1.3 1 0 0 1 1 1 0 Cloacin immunity protein | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:140281-141354 Augustus predicted protein sequence Tomato scaffold752_contigs=5~140281-141354 Tropomyosin PF00261.15 g30780.t1 - 0.00039 19.5 5.6 0.0004 19.5 3.9 1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:311396-311605 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~311396-311605 Ashwin PF15323.1 g37109.t1 - 0.34 10.8 6.9 0.38 10.7 4.4 1.5 1 1 0 1 1 1 0 Developmental protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:296942-297584 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~296942-297584 RHH_2 PF03693.9 g43462.t1 - 0.052 13.7 0 0.11 12.7 0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:155506-156192 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~155506-156192 Ustilago_mating PF05722.7 g66135.t1 - 0.074 12.3 0 0.085 12.1 0 1.1 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:5516-5836 Augustus predicted protein sequence Tomato scaffold2152_contigs=6~5516-5836 PMD PF10536.4 g73454.t1 - 0.000044 22.6 0 0.0003 19.8 0 2.1 2 1 0 2 2 2 1 Plant mobile domain | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:15625-18047 Augustus predicted protein sequence Tomato scaffold2465_contigs=4~15625-18047 VP7 PF00434.13 g18606.t1 - 0.095 11.5 0.7 0.15 10.9 0 1.6 2 0 0 2 2 2 0 Glycoprotein VP7 | Ref_seq=scaffold729_contigs=3, transcript_loc=scaffold729_contigs=3:5506-9619 Augustus predicted protein sequence Tomato scaffold729_contigs=3~5506-9619 CAP_N PF01213.14 g11426.t1 - 0.49 9.6 4 0.56 9.4 1.4 1.9 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:47155-48718 Augustus predicted protein sequence Tomato scaffold524_contigs=3~47155-48718 Prefoldin_2 PF01920.15 g68178.t1 - 0.0045 16.7 1.5 0.13 12 0 2.1 1 1 1 2 2 2 2 Prefoldin subunit | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:61474-62085 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~61474-62085 HSP20 PF00011.16 g54789.t1 - 0.059 13.2 0.1 0.087 12.6 0 1.2 1 0 0 1 1 1 0 Hsp20/alpha crystallin family | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:60992-66193 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~60992-66193 DUF4164 PF13747.1 g85238.t1 - 0.051 13.7 5.9 0.1 12.7 4.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold2795_contigs=1, transcript_loc=scaffold2795_contigs=1:40988-42664 Augustus predicted protein sequence Tomato scaffold2795_contigs=1~40988-42664 DUF4219 PF13961.1 g28837.t1 - 0.011 15.1 0.2 0.02 14.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:495704-499727 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~495704-499727 LRRNT_2 PF08263.7 g2601.t1 - 0.079 12.9 0.2 0.079 12.9 0.1 1.8 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:35322-35567 Augustus predicted protein sequence Tomato scaffold247_contigs=8~35322-35567 DUF3348 PF11828.3 g8919.t1 - 0.039 13.3 0 0.049 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3348) | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:281080-281352 Augustus predicted protein sequence Tomato scaffold442_contigs=14~281080-281352 DBD_Tnp_Mut PF03108.10 g65172.t1 - 5.6E-009 35.4 0.2 0.00000001 34.6 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:148245-150479 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~148245-150479 NTase_sub_bind PF08780.6 g57885.t1 - 0.047 13.4 0.2 0.13 12 0 1.6 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:235524-236675 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~235524-236675 CDC45 PF02724.9 g37573.t1 - 0.028 12.4 11.4 0.041 11.9 7.9 1.3 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:230740-234397 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~230740-234397 RNase_Zc3h12a_2 PF14626.1 g38951.t1 - 0.022 14.6 0.2 0.029 14.2 0.1 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain | Ref_seq=scaffold1259_contigs=1, transcript_loc=scaffold1259_contigs=1:66015-66392 Augustus predicted protein sequence Tomato scaffold1259_contigs=1~66015-66392 Herpes_BLRF2 PF05812.7 g84153.t1 - 0.63 9.8 5.2 9 6.1 0.5 2.4 1 1 1 2 2 2 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:202493-203155 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~202493-203155 DUF760 PF05542.6 g77805.t1 - 0.13 12.4 0 0.23 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF760) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:406264-406818 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~406264-406818 DUF1178 PF06676.6 g9343.t1 - 0.015 15.5 0.3 0.017 15.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:17964-18961 Augustus predicted protein sequence Tomato scaffold455_contigs=9~17964-18961 Pro_racemase PF05544.6 g3359.t1 - 0.1 11.3 0 0.24 10.1 0 1.6 2 0 0 2 2 2 0 Proline racemase | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:112358-112729 Augustus predicted protein sequence Tomato scaffold270_contigs=10~112358-112729 Apq12 PF12716.2 g47990.t1 - 0.05 13.2 0.1 0.072 12.7 0.1 1.2 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:261613-264488 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~261613-264488 Rab5-bind PF09311.6 g3403.t1 - 0.069 13 0.4 0.069 13 0.2 2.2 2 1 0 2 2 2 0 Rabaptin-like protein | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:268943-270513 Augustus predicted protein sequence Tomato scaffold270_contigs=10~268943-270513 Tox-REase-5 PF15648.1 g66610.t1 - 0.18 12.1 0.3 23 5.3 0 2.1 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 5 | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:217124-217507 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~217124-217507 adh_short PF00106.20 g31792.t1 - 0.13 12.1 1 0.37 10.7 0.5 1.7 1 1 1 2 2 2 0 short chain dehydrogenase | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:134511-134843 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~134511-134843 YccV-like PF08755.6 g2147.t1 - 0.1 12.5 0 0.2 11.6 0 1.5 1 0 0 1 1 1 0 Hemimethylated DNA-binding protein YccV like | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:5446-10766 Augustus predicted protein sequence Tomato scaffold228_contigs=4~5446-10766 CENP-R PF06729.7 g23992.t1 - 0.00011 21.9 5.4 0.00012 21.7 3.5 1.3 1 1 0 1 1 1 1 Kinetochore component, CENP-R | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:25418-25855 Augustus predicted protein sequence Tomato scaffold875_contigs=10~25418-25855 MCM2_N PF12619.3 g49809.t1 - 0.063 13.2 3.3 0.088 12.7 2.3 1.1 1 0 0 1 1 1 0 Mini-chromosome maintenance protein 2 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:296780-297932 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~296780-297932 Chal_sti_synt_N PF00195.14 g70066.t1 - 0.14 11.4 0 0.17 11 0 1.1 1 0 0 1 1 1 0 Chalcone and stilbene synthases, N-terminal domain | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:46004-46710 Augustus predicted protein sequence Tomato scaffold2321_contigs=13~46004-46710 PWI PF01480.12 g74863.t1 - 0.061 13.4 0.1 90 3.2 0 3.1 3 0 0 3 3 3 0 PWI domain | Ref_seq=scaffold2573_contigs=5, transcript_loc=scaffold2573_contigs=5:1-8268 Augustus predicted protein sequence Tomato scaffold2573_contigs=5~1-8268 FH2 PF02181.18 g40625.t1 - 0.0066 15.3 0 0.0078 15.1 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:27819-28421 Augustus predicted protein sequence Tomato scaffold1304_contigs=4~27819-28421 Xan_ur_permease PF00860.15 g16222.t1 - 0.026 12.9 2.2 0.029 12.8 1.5 1 1 0 0 1 1 1 0 Permease family | Ref_seq=scaffold663_contigs=3, transcript_loc=scaffold663_contigs=3:16326-16553 Augustus predicted protein sequence Tomato scaffold663_contigs=3~16326-16553 DEC-1_N PF04625.8 g31417.t1 - 0.36 9.4 7.8 0.44 9.1 5.4 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold1072_contigs=9, transcript_loc=scaffold1072_contigs=9:22889-23721 Augustus predicted protein sequence Tomato scaffold1072_contigs=9~22889-23721 YdjO PF14169.1 g72137.t1 - 0.00028 20.2 0.1 0.0048 16.3 0.1 2.3 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:320218-325212 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~320218-325212 Kunitz_legume PF00197.13 g19021.t1 - 0.13 11.8 0 0.16 11.4 0 1.1 1 0 0 1 1 1 0 Trypsin and protease inhibitor | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:205562-206086 Augustus predicted protein sequence Tomato scaffold742_contigs=5~205562-206086 Mod_r PF07200.8 g58352.t1 - 0.26 11.1 2.4 0.66 9.8 1.7 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:160024-160620 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~160024-160620 PPI_Ypi1 PF07491.6 g37040.t1 - 0.046 13.3 0 0.074 12.6 0 1.4 1 0 0 1 1 1 0 Protein phosphatase inhibitor | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:68087-68395 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~68087-68395 Exonuc_VII_L PF02601.10 g24673.t1 - 3.5 6.7 7.8 3.7 6.6 5.4 1 1 0 0 1 1 1 0 Exonuclease VII, large subunit | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:72169-72378 Augustus predicted protein sequence Tomato scaffold893_contigs=2~72169-72378 DUF648 PF04890.8 g54045.t1 - 0.12 11.4 9.8 0.21 10.7 6.7 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF648) | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:301636-302741 Augustus predicted protein sequence Tomato scaffold1710_contigs=11~301636-302741 DUF845 PF05820.6 g18439.t1 - 0.066 12.9 0.1 5.1 6.8 0 2.8 2 1 0 2 2 2 0 Baculovirus protein of unknown function (DUF845) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:39346-39915 Augustus predicted protein sequence Tomato scaffold724_contigs=4~39346-39915 CedA PF10729.4 g13257.t1 - 0.01 15.3 0 0.018 14.5 0 1.4 1 0 0 1 1 1 0 Cell division activator CedA | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:141279-141701 Augustus predicted protein sequence Tomato scaffold570_contigs=9~141279-141701 ATHILA PF03078.10 g5099.t1 - 1.4E-010 40.3 0.1 1.7E-010 40.1 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:376383-376775 Augustus predicted protein sequence Tomato scaffold315_contigs=11~376383-376775 DHC_N1 PF08385.7 g2152.t1 - 0.047 12 0.1 0.078 11.3 0 1.4 2 0 0 2 2 2 0 Dynein heavy chain, N-terminal region 1 | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:20127-25011 Augustus predicted protein sequence Tomato scaffold228_contigs=4~20127-25011 TGF_beta_GS PF08515.7 g53554.t1 - 0.16 11.3 1.8 0.25 10.7 1.2 1.2 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold1696_contigs=1, transcript_loc=scaffold1696_contigs=1:1-118 Augustus predicted protein sequence Tomato scaffold1696_contigs=1~1-118 bZIP_2 PF07716.10 g31954.t1 - 0.11 12.3 1.6 0.24 11.2 1.1 1.5 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:70769-71463 Augustus predicted protein sequence Tomato scaffold1097_contigs=2~70769-71463 Med15 PF09606.5 g48517.t1 - 0.072 11.2 16.2 0.086 11 11.3 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:153164-156206 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~153164-156206 PGBA_C PF15437.1 g50468.t1 - 0.02 15 4 0.024 14.7 2.7 1.2 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA C-terminal | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:237126-237350 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~237126-237350 YecR PF13992.1 g50006.t1 - 0.087 12.9 0 0.11 12.6 0 1.2 1 0 0 1 1 1 0 YecR-like lipoprotein | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:61968-62649 Augustus predicted protein sequence Tomato scaffold1552_contigs=5~61968-62649 Haemolytic PF01809.13 g19384.t1 - 0.051 13.1 0.1 0.056 13 0 1.2 1 0 0 1 1 1 0 Haemolytic domain | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:317502-318433 Augustus predicted protein sequence Tomato scaffold751_contigs=13~317502-318433 DUF496 PF04363.7 g17411.t1 - 0.1 12.4 0.1 0.19 11.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF496) | Ref_seq=scaffold706_contigs=4, transcript_loc=scaffold706_contigs=4:26769-27813 Augustus predicted protein sequence Tomato scaffold706_contigs=4~26769-27813 SR-25 PF10500.4 g29019.t1 - 0.0042 16.5 7.4 0.0061 16 5.1 1.2 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:186696-190908 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~186696-190908 Big_3_3 PF13750.1 g70290.t1 - 0.052 12.9 0.1 0.061 12.7 0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:360693-361055 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~360693-361055 YecM PF06185.7 g36581.t1 - 0.024 13.8 0 0.027 13.6 0 1.1 1 0 0 1 1 1 0 YecM protein | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:12643-12882 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~12643-12882 CCDC155 PF14662.1 g59235.t1 - 0.0093 15.5 0.8 0.014 15 0.6 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1902_contigs=4, transcript_loc=scaffold1902_contigs=4:58251-64218 Augustus predicted protein sequence Tomato scaffold1902_contigs=4~58251-64218 zf-C2H2 PF00096.21 g31093.t1 - 0.044 14.1 0.3 0.15 12.4 0.2 2 1 1 0 1 1 1 0 Zinc finger, C2H2 type | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:236724-237422 Augustus predicted protein sequence Tomato scaffold1055_contigs=9~236724-237422 TMV_coat PF00721.16 g78987.t1 - 0.0034 17.3 0.2 0.0048 16.8 0.1 1.2 1 0 0 1 1 1 1 Virus coat protein (TMV like) | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:70758-72224 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~70758-72224 BLVR PF06375.6 g36559.t1 - 0.04 13.7 1.7 0.076 12.8 1.2 1.4 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:59603-61909 Augustus predicted protein sequence Tomato scaffold1204_contigs=5~59603-61909 PROL5-SMR PF15621.1 g76513.t1 - 2.2 8.7 13.3 3.5 8 9.2 1.3 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:97898-98437 Augustus predicted protein sequence Tomato scaffold2632_contigs=8~97898-98437 PROL5-SMR PF15621.1 g2206.t1 - 1.5 9.2 7.8 1.7 9.1 4.7 1.6 1 1 1 2 2 2 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:208104-209927 Augustus predicted protein sequence Tomato scaffold228_contigs=4~208104-209927 DUF1639 PF07797.9 g25007.t1 - 0.055 12.8 0.2 0.24 10.8 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1639) | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:11857-12153 Augustus predicted protein sequence Tomato scaffold909_contigs=6~11857-12153 CbiA PF01656.18 g63436.t1 - 0.056 12.8 0.1 0.073 12.4 0 1.1 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:343747-344316 Augustus predicted protein sequence Tomato scaffold2035_contigs=8~343747-344316 FlgN PF05130.7 g36941.t1 - 0.0044 17.2 0.3 0.0054 16.9 0.2 1.1 1 0 0 1 1 1 1 FlgN protein | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:208298-208636 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~208298-208636 BCAS2 PF05700.6 g80640.t1 - 0.0092 15.4 4.8 0.017 14.6 3.3 1.4 1 1 0 1 1 1 1 Breast carcinoma amplified sequence 2 (BCAS2) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:128983-129833 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~128983-129833 Cyclase PF04199.8 g12062.t1 - 0.069 12.8 0 0.11 12.1 0 1.3 1 0 0 1 1 1 0 Putative cyclase | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:303350-304669 Augustus predicted protein sequence Tomato scaffold535_contigs=8~303350-304669 DUF755 PF05501.6 g1943.t1 - 0.18 11.8 8.7 0.26 11.3 6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:215344-215718 Augustus predicted protein sequence Tomato scaffold219_contigs=6~215344-215718 PBP_sp32 PF07222.7 g65059.t1 - 0.11 11.7 5.2 0.15 11.1 3.6 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2111_contigs=2, transcript_loc=scaffold2111_contigs=2:5642-6943 Augustus predicted protein sequence Tomato scaffold2111_contigs=2~5642-6943 IncA PF04156.9 g86142.t1 - 0.0063 16.1 2 0.0092 15.5 1.4 1.2 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:5503-9078 Augustus predicted protein sequence Tomato scaffold2839_contigs=1~5503-9078 Phage_Gp23 PF10669.4 g19849.t1 - 0.014 15.5 4 0.018 15.1 2.8 1.3 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:82962-83243 Augustus predicted protein sequence Tomato scaffold760_contigs=13~82962-83243 SCP-1 PF05483.7 g24005.t1 - 0.024 12.4 0.5 0.028 12.2 0.3 1 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:103337-104340 Augustus predicted protein sequence Tomato scaffold875_contigs=10~103337-104340 Macoilin PF09726.4 g55260.t1 - 0.06 11.6 2.7 0.071 11.3 1.9 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:576870-577739 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~576870-577739 PolyA_pol PF01743.15 g48269.t1 - 0.15 12.2 0.3 0.15 12.2 0.2 1 1 0 0 1 1 1 0 Poly A polymerase head domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:188355-188591 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~188355-188591 DUF372 PF04036.7 g87312.t1 - 0.0095 15.3 0.5 4.1 6.9 0 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF372) | Ref_seq=scaffold2998_contigs=1, transcript_loc=scaffold2998_contigs=1:2819-7472 Augustus predicted protein sequence Tomato scaffold2998_contigs=1~2819-7472 SARG PF15385.1 g46472.t1 - 0.43 9.8 18.5 0.48 9.7 12.8 1 1 0 0 1 1 1 0 Specifically androgen-regulated gene protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:228957-229481 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~228957-229481 Strep_his_triad PF04270.8 g23741.t1 - 0.13 11.9 0.1 0.24 11.1 0 1.4 1 0 0 1 1 1 0 Streptococcal histidine triad protein | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:175265-175600 Augustus predicted protein sequence Tomato scaffold865_contigs=7~175265-175600 Vir_act_alpha_C PF10400.4 g31753.t1 - 0.011 16 0.1 0.014 15.7 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1087_contigs=6, transcript_loc=scaffold1087_contigs=6:10611-10904 Augustus predicted protein sequence Tomato scaffold1087_contigs=6~10611-10904 7TM_GPCR_Srj PF10319.4 g36623.t1 - 0.022 13.9 0.4 0.037 13.1 0.3 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srj | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:128479-130726 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~128479-130726 Neisseria_TspB PF05616.8 g78204.t1 - 0.038 12.3 1.2 0.045 12.1 0.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:531430-531918 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~531430-531918 FlxA PF14282.1 g37557.t1 - 0.03 14.2 1.3 0.03 14.2 0.9 2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:177676-178008 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~177676-178008 RVT_3 PF13456.1 g16845.t1 - 0.000042 23.2 0 0.000054 22.8 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:32619-33002 Augustus predicted protein sequence Tomato scaffold685_contigs=4~32619-33002 DUF605 PF04652.11 g40357.t1 - 6.1 6.1 14.5 9.1 5.5 10.1 1.2 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:244680-246039 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~244680-246039 zf-CCHC PF00098.18 g47986.t1 - 0.00057 19.6 0.4 0.00057 19.6 0.3 2.1 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:253735-254184 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~253735-254184 DUF4164 PF13747.1 g16095.t1 - 0.068 13.3 0.4 0.11 12.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:285853-286392 Augustus predicted protein sequence Tomato scaffold654_contigs=10~285853-286392 HALZ PF02183.13 g46335.t1 - 0.11 12.2 5.1 0.25 11.1 0.4 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:68844-69587 Augustus predicted protein sequence Tomato scaffold1480_contigs=4~68844-69587 Zip PF02535.17 g79305.t1 - 0.045 12.7 1.4 0.054 12.4 0.9 1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:215059-215418 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~215059-215418 zf-CCHC PF00098.18 g45410.t1 - 0.0000025 27.1 0.9 0.0000036 26.6 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:166649-167011 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~166649-167011 FH2 PF02181.18 g33577.t1 - 0.0029 16.5 0.1 0.0035 16.2 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:173131-173544 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~173131-173544 Red1 PF07964.6 g410.t1 - 9.1 4.2 9.6 0.71 7.9 3.2 1.6 2 0 0 2 2 2 0 Rec10 / Red1 | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:28173-29652 Augustus predicted protein sequence Tomato scaffold31_contigs=1~28173-29652 MAD PF05557.8 g53805.t1 - 0.051 11.6 0.6 0.055 11.5 0.4 1 1 0 0 1 1 1 0 Mitotic checkpoint protein | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:75424-75627 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~75424-75627 Vir_act_alpha_C PF10400.4 g55067.t1 - 0.035 14.4 2.3 0.061 13.7 0.1 2 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:83124-83591 Augustus predicted protein sequence Tomato scaffold1736_contigs=8~83124-83591 Strabismus PF06638.6 g24383.t1 - 0.14 10.3 0.1 0.18 10 0.1 1.1 1 0 0 1 1 1 0 Strabismus protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:404460-405397 Augustus predicted protein sequence Tomato scaffold880_contigs=9~404460-405397 Toxin_23 PF08093.6 g10468.t1 - 4.6 7.2 10.3 14 5.7 0.2 3.8 4 0 0 4 4 4 0 Magi 5 toxic peptide family | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:324985-325344 Augustus predicted protein sequence Tomato scaffold498_contigs=12~324985-325344 BaffR-Tall_bind PF09256.5 g16168.t1 - 0.037 13.6 0 11 5.6 0 2.3 2 0 0 2 2 2 0 BAFF-R, TALL-1 binding | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:39620-40273 Augustus predicted protein sequence Tomato scaffold656_contigs=9~39620-40273 NAM-associated PF14303.1 g41613.t1 - 0.000000063 33 0.2 0.000000079 32.7 0.1 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1337_contigs=2, transcript_loc=scaffold1337_contigs=2:40108-40754 Augustus predicted protein sequence Tomato scaffold1337_contigs=2~40108-40754 UBN2_2 PF14227.1 g5141.t1 - 0.087 12.3 0 0.17 11.4 0 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:474485-476271 Augustus predicted protein sequence Tomato scaffold315_contigs=11~474485-476271 Csm1 PF12539.3 g66724.t1 - 0.066 13.7 0.1 0.13 12.7 0 1.5 1 0 0 1 1 1 0 Chromosome segregation protein Csm1/Pcs1 | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:169880-171028 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~169880-171028 IF2_assoc PF08364.6 g45259.t1 - 2.3 8.2 10.1 4.8 7.2 0.3 3.8 3 2 0 3 3 3 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:547075-547506 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~547075-547506 DUF327 PF03885.8 g71098.t1 - 0.019 14.7 0.1 0.035 13.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:354906-355765 Augustus predicted protein sequence Tomato scaffold2355_contigs=18~354906-355765 HALZ PF02183.13 g37527.t1 - 0.059 13 1.2 0.059 13 0.8 2.3 2 1 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:72968-73429 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~72968-73429 Dynactin_p22 PF07426.6 g22615.t1 - 0.012 14.9 0.8 0.015 14.5 0.6 1.2 1 0 0 1 1 1 0 Dynactin subunit p22 | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:116074-116502 Augustus predicted protein sequence Tomato scaffold832_contigs=9~116074-116502 DUF1025 PF06262.6 g39496.t1 - 0.011 15.4 0.1 5.9 6.7 0 2.5 2 0 0 2 2 2 0 Possibl zinc metallo-peptidase | Ref_seq=scaffold1272_contigs=8, transcript_loc=scaffold1272_contigs=8:16257-17184 Augustus predicted protein sequence Tomato scaffold1272_contigs=8~16257-17184 HpaP PF09483.5 g83530.t1 - 0.16 11.9 1.2 0.19 11.6 0.8 1.3 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:843417-843806 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~843417-843806 DUF1985 PF09331.6 g72162.t1 - 0.036 13.8 0 0.044 13.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:438577-439087 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~438577-439087 AF1Q PF15017.1 g15292.t1 - 0.21 11.4 4.2 0.15 11.9 0.9 2.1 2 0 0 2 2 2 0 Drug resistance and apoptosis regulator | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:10371-12794 Augustus predicted protein sequence Tomato scaffold624_contigs=9~10371-12794 DUF2284 PF10050.4 g29431.t1 - 0.19 11.2 4.2 0.25 10.9 2.9 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:164335-164932 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~164335-164932 Kinin PF08260.6 g7933.t1 - 6.6 7.4 5.5 13 6.5 0.1 2.9 2 0 0 2 2 2 0 Insect kinin peptide | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:53559-54387 Augustus predicted protein sequence Tomato scaffold411_contigs=3~53559-54387 YjbE PF11106.3 g55959.t1 - 1.1 9.3 12.9 1.9 8.4 1.8 2.3 1 1 1 2 2 2 0 Exopolysaccharide production protein YjbE | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:111438-115375 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~111438-115375 UBN2 PF14223.1 g36857.t1 - 0.0017 18.1 0.1 0.0027 17.5 0.1 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:354913-355787 Augustus predicted protein sequence Tomato scaffold1209_contigs=7~354913-355787 Umbravirus_LDM PF04817.7 g50982.t1 - 0.0076 15.4 0.2 4 6.5 0 2.3 2 0 0 2 2 2 2 Umbravirus long distance movement (LDM) family | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:7261-10159 Augustus predicted protein sequence Tomato scaffold1596_contigs=1~7261-10159 DUF4551 PF15087.1 g3209.t1 - 0.82 7.9 4.8 1 7.6 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:37901-38449 Augustus predicted protein sequence Tomato scaffold264_contigs=10~37901-38449 DUF3099 PF11298.3 g1244.t1 - 0.084 12.6 0.3 0.31 10.8 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:8875-9698 Augustus predicted protein sequence Tomato scaffold195_contigs=3~8875-9698 Tropomyosin_1 PF12718.2 g3448.t1 - 0.0063 16.3 2.6 0.0086 15.9 1.8 1.1 1 0 0 1 1 1 1 Tropomyosin like | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:34153-34578 Augustus predicted protein sequence Tomato scaffold272_contigs=1~34153-34578 FXR1P_C PF12235.3 g76855.t1 - 1.4 9 13.5 0.046 13.8 4.2 2 2 0 0 2 2 2 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:115494-116736 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~115494-116736 CAP_N PF01213.14 g68172.t1 - 0.11 11.7 2.5 0.1 11.8 1.8 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:42269-42705 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~42269-42705 Succ_CoA_lig PF13607.1 g79618.t1 - 0.0064 16 0.3 4.8 6.7 0 2.6 2 0 0 2 2 2 2 Succinyl-CoA ligase like flavodoxin domain | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:291170-293434 Augustus predicted protein sequence Tomato scaffold2699_contigs=36~291170-293434 SspB PF04386.8 g57769.t1 - 0.17 11.5 2.8 0.17 11.4 1.9 1.1 1 0 0 1 1 1 0 Stringent starvation protein B | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:573778-574014 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~573778-574014 MtrB PF05440.7 g33760.t1 - 0.13 12.3 0 0.22 11.5 0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:290354-291172 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~290354-291172 ATP-synt_E PF05680.7 g6650.t1 - 2.3 8.2 8.6 4.3 7.3 5.9 1.4 1 0 0 1 1 1 0 ATP synthase E chain | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:146293-147333 Augustus predicted protein sequence Tomato scaffold380_contigs=11~146293-147333 PRP8_domainIV PF12134.3 g82180.t1 - 0.016 14.5 0.5 0.023 14 0.3 1.2 1 0 0 1 1 1 0 PRP8 domain IV core | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:616238-618054 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~616238-618054 UNC-93 PF05978.11 g36867.t1 - 0.095 12.1 0.3 0.13 11.7 0.2 1.1 1 0 0 1 1 1 0 Ion channel regulatory protein UNC-93 | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:381014-381376 Augustus predicted protein sequence Tomato scaffold1209_contigs=7~381014-381376 Peptidase_M28 PF04389.12 g85176.t1 - 0.058 13.1 0.1 0.07 12.8 0 1 1 0 0 1 1 1 0 Peptidase family M28 | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:61631-61888 Augustus predicted protein sequence Tomato scaffold2793_contigs=1~61631-61888 Cytidylate_kin2 PF13189.1 g28466.t1 - 0.0095 15.8 0.1 0.012 15.5 0 1.1 1 0 0 1 1 1 1 Cytidylate kinase-like family | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:165934-166926 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~165934-166926 DUF2996 PF11210.3 g18089.t1 - 0.041 14.1 0 13 6 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2996) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:383773-387612 Augustus predicted protein sequence Tomato scaffold720_contigs=9~383773-387612 SAM_PNT PF02198.11 g51906.t1 - 0.0033 17.1 0 0.0052 16.5 0 1.2 1 0 0 1 1 1 1 Sterile alpha motif (SAM)/Pointed domain | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:57054-58199 Augustus predicted protein sequence Tomato scaffold1626_contigs=2~57054-58199 ALMS_motif PF15309.1 g36583.t1 - 0.011 15.6 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 ALMS motif | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:19890-20108 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~19890-20108 RVT_3 PF13456.1 g55825.t1 - 0.038 13.7 0 0.049 13.3 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1776_contigs=16, transcript_loc=scaffold1776_contigs=16:89944-90231 Augustus predicted protein sequence Tomato scaffold1776_contigs=16~89944-90231 ATHILA PF03078.10 g81260.t1 - 0.0017 17 0.1 0.002 16.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:131791-132789 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~131791-132789 Tropomyosin PF00261.15 g33550.t1 - 0.13 11.3 0 0.14 11.2 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:103171-103464 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~103171-103464 Rib_recp_KP_reg PF05104.7 g45130.t1 - 0.47 10.9 8 0.67 10.4 5.5 1.2 1 0 0 1 1 1 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:96708-97070 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~96708-97070 Dynamitin PF04912.9 g86008.t1 - 0.084 11.6 0.7 5.1 5.7 0 1.9 1 1 1 2 2 2 0 Dynamitin | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:23481-23729 Augustus predicted protein sequence Tomato scaffold2832_contigs=1~23481-23729 ATHILA PF03078.10 g54609.t1 - 0.016 13.8 0 0.021 13.4 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:203756-208733 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~203756-208733 Adhesin_P1 PF03257.8 g81239.t1 - 0.081 13.2 0.1 12 6.3 0 2.2 1 1 1 2 2 2 0 Mycoplasma adhesin P1 | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:421940-423309 Augustus predicted protein sequence Tomato scaffold2724_contigs=11~421940-423309 Dam PF05869.6 g26042.t1 - 0.054 12.9 0.2 0.081 12.3 0.1 1.2 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:234957-239286 Augustus predicted protein sequence Tomato scaffold942_contigs=10~234957-239286 DUF4337 PF14235.1 g28250.t1 - 3.1 7.6 5.3 4.4 7.1 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:46262-46884 Augustus predicted protein sequence Tomato scaffold994_contigs=5~46262-46884 Troponin-I_N PF11636.3 g19506.t1 - 0.018 14.7 2.4 0.018 14.7 1.6 2.2 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:155690-156857 Augustus predicted protein sequence Tomato scaffold752_contigs=5~155690-156857 DUF605 PF04652.11 g30593.t1 - 0.59 9.4 14.2 0.69 9.2 9.8 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:285489-286631 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~285489-286631 Rotamase_2 PF13145.1 g28371.t1 - 0.032 14.8 1.5 0.032 14.8 1 1.7 2 0 0 2 2 2 0 PPIC-type PPIASE domain | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:40305-45346 Augustus predicted protein sequence Tomato scaffold999_contigs=6~40305-45346 ATPgrasp_YheCD PF14398.1 g57610.t1 - 0.17 10.6 0 0.22 10.2 0 1.1 1 0 0 1 1 1 0 YheC/D like ATP-grasp | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:19751-20984 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~19751-20984 Seryl_tRNA_N PF02403.17 g50683.t1 - 0.0026 17.7 2.9 0.0047 16.9 2 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:163881-164541 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~163881-164541 Retrotrans_gag PF03732.12 g80347.t1 - 0.0089 16 0.1 0.016 15.2 0 1.5 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:200188-200644 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~200188-200644 Sporozoite_P67 PF05642.6 g59094.t1 - 9.1 4 11.4 10 3.8 7.9 1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:185432-185929 Augustus predicted protein sequence Tomato scaffold1896_contigs=29~185432-185929 UBN2 PF14223.1 g19188.t1 - 0.13 12 2 0.75 9.6 0.1 2.3 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:5800-6732 Augustus predicted protein sequence Tomato scaffold748_contigs=11~5800-6732 TRADD_N PF09034.5 g37247.t1 - 0.058 13.3 0.8 0.061 13.3 0.6 1.2 1 0 0 1 1 1 0 TRADD, N-terminal domain | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:42521-42766 Augustus predicted protein sequence Tomato scaffold1216_contigs=10~42521-42766 Pilin_PilX PF11530.3 g2370.t1 - 0.15 11.6 0 0.2 11.3 0 1.1 1 0 0 1 1 1 0 Minor type IV pilin, PilX | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:106212-107109 Augustus predicted protein sequence Tomato scaffold235_contigs=2~106212-107109 zf-HYPF PF07503.7 g86106.t1 - 0.7 9.3 6.7 26 4.3 0.1 3.4 3 0 0 3 3 3 0 HypF finger | Ref_seq=scaffold2837_contigs=1, transcript_loc=scaffold2837_contigs=1:5419-5886 Augustus predicted protein sequence Tomato scaffold2837_contigs=1~5419-5886 DUF4610 PF15384.1 g40412.t1 - 0.11 11.9 1.4 0.24 10.8 0.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4610) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:108962-109318 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~108962-109318 DUF4608 PF15381.1 g76384.t1 - 0.71 10 8.3 5.1 7.3 1.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:279858-280136 Augustus predicted protein sequence Tomato scaffold2624_contigs=4~279858-280136 Synaptobrevin PF00957.16 g55529.t1 - 0.049 13.2 0.1 0.061 12.9 0 1.2 1 0 0 1 1 1 0 Synaptobrevin | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:527444-529957 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~527444-529957 Tropomyosin PF00261.15 g45490.t1 - 0.014 14.5 2.3 0.014 14.5 1.6 1.6 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:7337-7693 Augustus predicted protein sequence Tomato scaffold1448_contigs=3~7337-7693 Keratin_B2 PF01500.12 g34915.t1 - 0.061 13 0.2 0.074 12.8 0.2 1.1 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:206403-207616 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~206403-207616 Mer2 PF09074.5 g73499.t1 - 0.052 13.4 1.3 0.082 12.8 0.9 1.2 1 0 0 1 1 1 0 Mer2 | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:1-5240 Augustus predicted protein sequence Tomato scaffold2473_contigs=16~1-5240 Myc_N PF01056.13 g43267.t1 - 0.036 13.2 0 0.051 12.7 0 1.2 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:304409-305068 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~304409-305068 DegS PF05384.6 g56311.t1 - 0.027 13.6 4.4 0.043 13 3 1.3 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:44101-48522 Augustus predicted protein sequence Tomato scaffold1801_contigs=9~44101-48522 SlyX PF04102.7 g23009.t1 - 0.0027 18 4.1 1.1 9.6 0.4 2.7 2 0 0 2 2 2 2 SlyX | Ref_seq=scaffold844_contigs=2, transcript_loc=scaffold844_contigs=2:330-1976 Augustus predicted protein sequence Tomato scaffold844_contigs=2~330-1976 Rtf2 PF04641.7 g31541.t1 - 0.6 9.2 24.5 0.7 9 17 1.2 1 0 0 1 1 1 0 Rtf2 RING-finger | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:141810-142280 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~141810-142280 Laminin_I PF06008.9 g82407.t1 - 0.00052 19.4 0.1 0.00083 18.7 0.1 1.2 1 0 0 1 1 1 1 Laminin Domain I | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:90584-94043 Augustus predicted protein sequence Tomato scaffold2742_contigs=4~90584-94043 Herpes_pp38 PF04846.8 g84436.t1 - 1.1 8.5 3.6 6.4 6.1 0.3 2.4 1 1 1 2 2 2 0 Herpesvirus pp38 phosphoprotein | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:120898-122975 Augustus predicted protein sequence Tomato scaffold2769_contigs=1~120898-122975 Retrotrans_gag PF03732.12 g37079.t1 - 0.016 15.2 0 0.023 14.7 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:194487-195281 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~194487-195281 Agenet PF05641.7 g41644.t1 - 6 7 0 6 7 0 3.4 4 1 0 4 4 4 0 Agenet domain | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:59437-60491 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~59437-60491 PsbT PF01405.12 g77220.t1 - 0.18 11.4 0.4 0.29 10.7 0.3 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre T protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:25853-26576 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~25853-26576 DUF434 PF04256.7 g44815.t1 - 0.019 14.3 0 0.038 13.3 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF434) | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:112793-116458 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~112793-116458 Neisseria_TspB PF05616.8 g74890.t1 - 9.5 4.4 10 12 4.1 6.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:120030-121240 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~120030-121240 DUF1199 PF06712.6 g37164.t1 - 0.41 10.4 4.6 5 7 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:551236-554635 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~551236-554635 UBN2 PF14223.1 g68309.t1 - 0.0071 16.1 0.4 0.015 15 0.1 1.7 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:240206-240709 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~240206-240709 DUF3938 PF13074.1 g70756.t1 - 0.15 11.9 0.9 0.38 10.6 0.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3938) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:24660-27910 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~24660-27910 Trypan_PARP PF05887.6 g18464.t1 - 2.5 7.9 17.7 4 7.2 12.3 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:135208-136249 Augustus predicted protein sequence Tomato scaffold724_contigs=4~135208-136249 Retrotrans_gag PF03732.12 g80499.t1 - 0.046 13.7 0.6 0.056 13.5 0.4 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:21179-21517 Augustus predicted protein sequence Tomato scaffold2712_contigs=5~21179-21517 RALF PF05498.6 g77914.t1 - 0.000016 25.6 2.3 0.09 13.6 0 2.2 2 0 0 2 2 2 2 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:839268-839564 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~839268-839564 Neur_chan_memb PF02932.11 g30352.t1 - 0.14 12 0.3 0.18 11.6 0.2 1.2 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:173332-174571 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~173332-174571 CDI PF02234.14 g29795.t1 - 0.079 12.7 0.2 0.13 12 0.1 1.3 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:104038-106440 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~104038-106440 Squash PF00299.13 g65416.t1 - 0.47 10.3 2.3 0.74 9.6 1.6 1.4 1 0 0 1 1 1 0 Squash family serine protease inhibitor | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:433757-434678 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~433757-434678 DUF4612 PF15389.1 g22634.t1 - 0.7 10.5 11.2 0.96 10 7.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4612) | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:208891-209175 Augustus predicted protein sequence Tomato scaffold832_contigs=9~208891-209175 ATP-synt_B PF00430.13 g34587.t1 - 5.6 6.7 7.6 0.53 10 2.2 1.4 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:356323-357091 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~356323-357091 Herpes_ICP4_C PF03585.9 g72834.t1 - 0.099 11.3 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein C-terminal region | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:230163-230561 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~230163-230561 Aft1_HRA PF11786.3 g63708.t1 - 0.077 13.2 0.6 4 7.7 0.2 2.1 1 1 1 2 2 2 0 Aft1 HRA domain | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:16447-17226 Augustus predicted protein sequence Tomato scaffold2042_contigs=5~16447-17226 Med2 PF11214.3 g38052.t1 - 0.12 12.4 1.4 0.16 12 1 1.2 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:92840-93172 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~92840-93172 RRS1 PF04939.7 g78053.t1 - 0.11 12 0.5 0.16 11.4 0.4 1.3 1 0 0 1 1 1 0 Ribosome biogenesis regulatory protein (RRS1) | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:26328-27143 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~26328-27143 Gyro_capsid PF04162.7 g20744.t1 - 0.39 8.9 2.7 0.47 8.6 1.9 1 1 0 0 1 1 1 0 Gyrovirus capsid protein (VP1) | Ref_seq=scaffold781_contigs=18, transcript_loc=scaffold781_contigs=18:114939-115313 Augustus predicted protein sequence Tomato scaffold781_contigs=18~114939-115313 SPOUT_MTase_2 PF14419.1 g56475.t1 - 0.04 13.1 0.2 0.061 12.5 0.1 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:73035-73799 Augustus predicted protein sequence Tomato scaffold1809_contigs=8~73035-73799 bZIP_1 PF00170.16 g32429.t1 - 0.0039 17.1 1.5 0.0063 16.4 0.2 1.9 2 0 0 2 2 2 1 bZIP transcription factor | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:218717-220202 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~218717-220202 HMD PF03201.11 g3910.t1 - 0.07 13 0 0.11 12.3 0 1.3 1 0 0 1 1 1 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:19984-21134 Augustus predicted protein sequence Tomato scaffold283_contigs=2~19984-21134 SapB_1 PF05184.10 g82578.t1 - 0.15 11.9 0.1 0.66 9.8 0 1.9 2 0 0 2 2 2 0 Saposin-like type B, region 1 | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:131215-135068 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~131215-135068 NTNH_C PF08470.5 g31856.t1 - 0.0032 17.1 0 0.0039 16.8 0 1.1 1 0 0 1 1 1 1 Nontoxic nonhaemagglutinin C-terminal | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:21037-21273 Augustus predicted protein sequence Tomato scaffold1091_contigs=17~21037-21273 DUF3073 PF11273.3 g72046.t1 - 0.4 11.2 5.6 5.7 7.5 0.5 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:20739-24850 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~20739-24850 Pox_A6 PF04924.7 g23339.t1 - 0.11 11.3 0 0.12 11.1 0 1.1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:16638-17024 Augustus predicted protein sequence Tomato scaffold858_contigs=4~16638-17024 zf-CCHC PF00098.18 g80753.t1 - 0.00013 21.6 0.9 0.00019 21.2 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:198654-198968 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~198654-198968 Transposase_24 PF03004.9 g50569.t1 - 0.013 15.4 0 0.018 14.9 0 1.3 1 0 0 1 1 1 0 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:40029-41566 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~40029-41566 DUF29 PF01724.11 g26202.t1 - 0.11 12.3 1.5 20 5 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function DUF29 | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:102963-104099 Augustus predicted protein sequence Tomato scaffold945_contigs=10~102963-104099 NAM-associated PF14303.1 g85598.t1 - 0.025 14.8 1.3 0.036 14.3 0.9 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2811_contigs=1, transcript_loc=scaffold2811_contigs=1:5387-11285 Augustus predicted protein sequence Tomato scaffold2811_contigs=1~5387-11285 Pox_Ag35 PF03286.9 g25842.t1 - 0.014 14.9 0.3 0.016 14.7 0.2 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:395472-398306 Augustus predicted protein sequence Tomato scaffold933_contigs=12~395472-398306 Dirigent PF03018.9 g17748.t1 - 0.12 11.8 0 0.13 11.8 0 1.2 1 0 0 1 1 1 0 Dirigent-like protein | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:112982-113411 Augustus predicted protein sequence Tomato scaffold714_contigs=9~112982-113411 TAF4 PF05236.9 g9077.t1 - 0.065 12.4 0.1 0.076 12.2 0 1 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:40975-41259 Augustus predicted protein sequence Tomato scaffold446_contigs=6~40975-41259 IFP_35_N PF07334.8 g37128.t1 - 0.011 15.6 2.1 0.038 13.9 0.1 2.3 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:372280-373549 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~372280-373549 Musclin PF11037.3 g58251.t1 - 0.037 13.6 0 0.042 13.4 0 1.1 1 0 0 1 1 1 0 Insulin-resistance promoting peptide in skeletal muscle | Ref_seq=scaffold1849_contigs=4, transcript_loc=scaffold1849_contigs=4:14532-14750 Augustus predicted protein sequence Tomato scaffold1849_contigs=4~14532-14750 DUF3245 PF11595.3 g41790.t1 - 0.14 12.4 4.2 0.18 12 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3245) | Ref_seq=scaffold1343_contigs=14, transcript_loc=scaffold1343_contigs=14:482299-484360 Augustus predicted protein sequence Tomato scaffold1343_contigs=14~482299-484360 DUF4391 PF14335.1 g62168.t1 - 0.077 12.3 0.2 0.18 11.2 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4391) | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:184842-185648 Augustus predicted protein sequence Tomato scaffold1984_contigs=7~184842-185648 DUF1675 PF07897.6 g7117.t1 - 0.031 14.1 7.7 0.058 13.2 5.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1675) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:173863-175191 Augustus predicted protein sequence Tomato scaffold387_contigs=7~173863-175191 BSP_II PF05432.6 g8049.t1 - 0.0087 15.3 7.4 0.009 15.3 5.2 1 1 0 0 1 1 1 1 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:83084-84250 Augustus predicted protein sequence Tomato scaffold416_contigs=9~83084-84250 PsaD PF02531.11 g39136.t1 - 0.086 12 0 0.16 11.2 0 1.4 1 0 0 1 1 1 0 PsaD | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:53497-54543 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~53497-54543 DUF1985 PF09331.6 g1998.t1 - 0.0046 16.7 0.1 0.0074 16.1 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:5440-7899 Augustus predicted protein sequence Tomato scaffold223_contigs=4~5440-7899 Ustilago_mating PF05722.7 g39975.t1 - 0.03 13.6 0.1 0.069 12.4 0.1 1.5 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:15119-16846 Augustus predicted protein sequence Tomato scaffold1285_contigs=4~15119-16846 Syndecan PF01034.15 g8001.t1 - 0.0013 18.3 4.1 0.0095 15.5 0 2.3 2 0 0 2 2 2 1 Syndecan domain | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:260114-260449 Augustus predicted protein sequence Tomato scaffold413_contigs=6~260114-260449 DUF4329 PF14220.1 g65483.t1 - 0.033 14.1 0.6 0.042 13.8 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4329) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:192126-192713 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~192126-192713 WT1 PF02165.10 g12911.t1 - 0.099 11.7 0 0.12 11.4 0 1.2 1 0 0 1 1 1 0 Wilm's tumour protein | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:338653-340717 Augustus predicted protein sequence Tomato scaffold561_contigs=10~338653-340717 DUF3974 PF13120.1 g10612.t1 - 0.028 14.2 4 0.038 13.8 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3974) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:12578-12994 Augustus predicted protein sequence Tomato scaffold503_contigs=7~12578-12994 DltD_N PF04915.7 g26098.t1 - 0.006 16.4 0.2 4.2 7.3 0 2.4 1 1 1 2 2 2 2 DltD N-terminal region | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:29534-30300 Augustus predicted protein sequence Tomato scaffold943_contigs=4~29534-30300 Calsequestrin PF01216.12 g40415.t1 - 0.034 12.9 0.1 0.046 12.4 0 1.1 1 0 0 1 1 1 0 Calsequestrin | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:113912-114388 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~113912-114388 DUF3669 PF12417.3 g12473.t1 - 0.02 14.6 0.4 0.86 9.3 0 2.3 1 1 1 2 2 2 0 Zinc finger protein | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:70674-71380 Augustus predicted protein sequence Tomato scaffold555_contigs=3~70674-71380 Exo70 PF03081.10 g40312.t1 - 0.0095 14.7 0.3 0.011 14.5 0.2 1 1 0 0 1 1 1 1 Exo70 exocyst complex subunit | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:141528-143219 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~141528-143219 XPG_I PF00867.13 g31564.t1 - 0.13 12.3 0 0.18 11.8 0 1.2 1 0 0 1 1 1 0 XPG I-region | Ref_seq=scaffold1077_contigs=2, transcript_loc=scaffold1077_contigs=2:5596-7643 Augustus predicted protein sequence Tomato scaffold1077_contigs=2~5596-7643 Toxin_32 PF08120.6 g47807.t1 - 0.11 12.1 1.6 0.22 11.1 1.1 1.5 1 0 0 1 1 1 0 Tamulustoxin family | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:193279-194019 Augustus predicted protein sequence Tomato scaffold1499_contigs=18~193279-194019 Herpes_UL43 PF05072.8 g28025.t1 - 0.2 10.3 2.7 0.23 10.1 1.9 1.1 1 0 0 1 1 1 0 Herpesvirus UL43 protein | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:24764-25246 Augustus predicted protein sequence Tomato scaffold990_contigs=6~24764-25246 DUF687 PF05095.7 g40800.t1 - 0.026 12.9 0 0.028 12.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF687) | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:269445-269843 Augustus predicted protein sequence Tomato scaffold1310_contigs=21~269445-269843 Tantalus PF15386.1 g69832.t1 - 0.04 13.6 0.1 0.092 12.5 0.1 1.6 1 1 1 2 2 2 0 Drosophila Tantalus-like | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:101268-101588 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~101268-101588 Antigen_Bd37 PF11641.3 g24816.t1 - 0.053 12.7 5.7 0.058 12.6 3.6 1.2 1 1 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold900_contigs=1, transcript_loc=scaffold900_contigs=1:3952-4359 Augustus predicted protein sequence Tomato scaffold900_contigs=1~3952-4359 Retrotrans_gag PF03732.12 g66759.t1 - 0.024 14.7 0 0.037 14 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2168_contigs=4, transcript_loc=scaffold2168_contigs=4:70749-73653 Augustus predicted protein sequence Tomato scaffold2168_contigs=4~70749-73653 GAS PF13851.1 g8923.t1 - 0.025 13.7 7.2 0.043 13 5 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:283885-284883 Augustus predicted protein sequence Tomato scaffold442_contigs=14~283885-284883 Matrilin_ccoil PF10393.4 g87575.t1 - 0.028 13.7 0 0.048 13 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3333_contigs=1, transcript_loc=scaffold3333_contigs=1:1-479 Augustus predicted protein sequence Tomato scaffold3333_contigs=1~1-479 zf-CW PF07496.10 g37512.t1 - 0.13 12 0.5 0.31 10.7 0.3 1.6 1 0 0 1 1 1 0 CW-type Zinc Finger | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:26662-27463 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~26662-27463 X_fast-SP_rel PF06669.6 g9357.t1 - 0.052 13.4 3.9 0.13 12.2 2.7 1.7 1 0 0 1 1 1 0 Xylella fastidiosa surface protein related | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:57213-58010 Augustus predicted protein sequence Tomato scaffold455_contigs=9~57213-58010 RVT_3 PF13456.1 g11335.t1 - 0.032 13.9 0 0.039 13.7 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:281641-281913 Augustus predicted protein sequence Tomato scaffold523_contigs=15~281641-281913 zf-BED PF02892.10 g28234.t1 - 0.014 15.1 2.4 0.034 13.8 1.7 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:1-688 Augustus predicted protein sequence Tomato scaffold994_contigs=5~1-688 Sigma70_ner PF04546.8 g50848.t1 - 0.0029 17.2 0.3 0.0047 16.5 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:7608-8678 Augustus predicted protein sequence Tomato scaffold1576_contigs=4~7608-8678 MAGE_N PF12440.3 g47643.t1 - 0.054 13.7 0.3 0.099 12.9 0.1 1.6 2 0 0 2 2 2 0 Melanoma associated antigen family N terminal | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:22307-22543 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~22307-22543 DUF4311 PF14188.1 g22135.t1 - 0.094 12.2 0 0.11 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4311) | Ref_seq=scaffold822_contigs=2, transcript_loc=scaffold822_contigs=2:48939-49441 Augustus predicted protein sequence Tomato scaffold822_contigs=2~48939-49441 Dymeclin PF09742.4 g2158.t1 - 0.013 13.6 0.2 0.016 13.3 0.1 1.1 1 0 0 1 1 1 0 Dyggve-Melchior-Clausen syndrome protein | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:36658-37134 Augustus predicted protein sequence Tomato scaffold228_contigs=4~36658-37134 PqqD PF05402.7 g29541.t1 - 0.028 14.4 0.1 0.046 13.7 0.1 1.3 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:2-478 Augustus predicted protein sequence Tomato scaffold1029_contigs=5~2-478 DUF604 PF04646.7 g60424.t1 - 0.063 12.4 0 0.075 12.2 0 1 1 0 0 1 1 1 0 Protein of unknown function, DUF604 | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:62157-62558 Augustus predicted protein sequence Tomato scaffold1951_contigs=6~62157-62558 zf-C3HC PF07967.8 g67363.t1 - 2.4 7.9 4.9 12 5.6 0.1 2.2 1 1 1 2 2 2 0 C3HC zinc finger-like | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:83608-83960 Augustus predicted protein sequence Tomato scaffold2182_contigs=7~83608-83960 DUF3602 PF12223.3 g2737.t1 - 0.23 11.8 3 0.54 10.6 2.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3602) | Ref_seq=scaffold250_contigs=3, transcript_loc=scaffold250_contigs=3:57787-58062 Augustus predicted protein sequence Tomato scaffold250_contigs=3~57787-58062 DUF4387 PF14330.1 g52238.t1 - 0.039 14.2 0 0.048 13.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:245565-245990 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~245565-245990 UBN2 PF14223.1 g51911.t1 - 0.0034 17.1 0 0.0054 16.5 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:64990-65503 Augustus predicted protein sequence Tomato scaffold1626_contigs=2~64990-65503 DUF778 PF05608.7 g67007.t1 - 0.041 13.8 0 0.048 13.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF778) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:478159-478902 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~478159-478902 GST_C_2 PF13410.1 g46010.t1 - 0.13 12.1 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:101154-101477 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~101154-101477 Herpes_DNAp_acc PF04929.7 g78329.t1 - 1.2 8 3.5 1.5 7.7 2.4 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:193244-195899 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~193244-195899 CENP-T PF15511.1 g2182.t1 - 0.0073 15.5 0.9 0.0083 15.4 0.6 1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:122085-122441 Augustus predicted protein sequence Tomato scaffold228_contigs=4~122085-122441 Amidase_2 PF01510.20 g52282.t1 - 0.055 13.5 0.2 0.063 13.3 0.1 1 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:181204-181482 Augustus predicted protein sequence Tomato scaffold1637_contigs=18~181204-181482 AT_hook PF02178.14 g78178.t1 - 0.57 10 8.9 2 8.3 6.2 2 1 0 0 1 1 1 0 AT hook motif | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:390470-391150 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~390470-391150 Homoserine_dh PF00742.14 g45194.t1 - 0.029 14 0.1 0.047 13.3 0.1 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:343927-344196 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~343927-344196 S19 PF06756.6 g45091.t1 - 0.013 15.3 0.1 2.9 7.8 0 2.2 2 0 0 2 2 2 0 Chorion protein S19 C-terminal | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:105530-107035 Augustus predicted protein sequence Tomato scaffold1443_contigs=30~105530-107035 MRAP PF15183.1 g19721.t1 - 0.025 14.1 0 0.045 13.3 0 1.4 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:226130-226637 Augustus predicted protein sequence Tomato scaffold757_contigs=4~226130-226637 MadM PF03818.8 g67991.t1 - 0.017 14.6 1.3 0.021 14.3 0.1 1.7 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:47767-48584 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~47767-48584 DUF2730 PF10805.3 g26466.t1 - 0.027 14.1 0.1 0.37 10.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:106500-107472 Augustus predicted protein sequence Tomato scaffold949_contigs=2~106500-107472 Gly-rich_Ago1 PF12764.2 g40023.t1 - 0.041 14.5 7.6 1.6 9.4 0.5 2.5 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1288_contigs=4, transcript_loc=scaffold1288_contigs=4:1-3232 Augustus predicted protein sequence Tomato scaffold1288_contigs=4~1-3232 EF-hand_like PF09279.6 g36228.t1 - 0.021 14.8 0.7 0.059 13.3 0.5 1.7 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:8963-10582 Augustus predicted protein sequence Tomato scaffold1189_contigs=6~8963-10582 PBP_sp32 PF07222.7 g16191.t1 - 0.037 13.2 2.1 0.039 13.1 1.5 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold659_contigs=1, transcript_loc=scaffold659_contigs=1:13169-13543 Augustus predicted protein sequence Tomato scaffold659_contigs=1~13169-13543 TMF_TATA_bd PF12325.3 g51144.t1 - 0.008 15.8 0.3 0.016 14.9 0.2 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:55012-56023 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~55012-56023 Neisseria_TspB PF05616.8 g26051.t1 - 1.3 7.3 13.6 1.9 6.8 9.4 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:256591-259303 Augustus predicted protein sequence Tomato scaffold942_contigs=10~256591-259303 Transposase_28 PF04195.7 g28052.t1 - 0.00098 18.4 0.1 0.0017 17.7 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:154764-157082 Augustus predicted protein sequence Tomato scaffold990_contigs=6~154764-157082 EMP24_GP25L PF01105.19 g79201.t1 - 0.033 13.9 0 0.056 13.1 0 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:55886-58277 Augustus predicted protein sequence Tomato scaffold2686_contigs=11~55886-58277 DUF481 PF04338.7 g52128.t1 - 0.0096 15.6 0 0.076 12.7 0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF481 | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:124086-126801 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~124086-126801 PIP49_N PF14875.1 g47007.t1 - 0.28 10.8 1.5 0.32 10.6 1 1.1 1 0 0 1 1 1 0 N-term cysteine-rich ER, FAM69 | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:94946-95305 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~94946-95305 DUF188 PF02639.9 g25825.t1 - 0.067 12.6 0.7 0.11 11.9 0.5 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:312959-313450 Augustus predicted protein sequence Tomato scaffold933_contigs=12~312959-313450 DUF4160 PF13711.1 g60026.t1 - 0.13 12.1 0.2 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4160) | Ref_seq=scaffold1938_contigs=9, transcript_loc=scaffold1938_contigs=9:345194-346499 Augustus predicted protein sequence Tomato scaffold1938_contigs=9~345194-346499 zf-RVT PF13966.1 g74418.t1 - 0.0000022 27.8 0.2 0.0000035 27.2 0.1 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:473718-475254 Augustus predicted protein sequence Tomato scaffold2538_contigs=14~473718-475254 RimM PF01782.13 g27079.t1 - 0.13 12.2 0.3 0.14 12 0.2 1.1 1 0 0 1 1 1 0 RimM N-terminal domain | Ref_seq=scaffold967_contigs=1, transcript_loc=scaffold967_contigs=1:1298-1507 Augustus predicted protein sequence Tomato scaffold967_contigs=1~1298-1507 SAGA-Tad1 PF12767.2 g34690.t1 - 0.099 12.2 1.8 0.11 12.1 1.2 1.1 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:8428-8928 Augustus predicted protein sequence Tomato scaffold1155_contigs=5~8428-8928 PI-PLC-X PF00388.14 g54542.t1 - 0.1 12 0 0.15 11.4 0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:206855-207721 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~206855-207721 DUF4071 PF13281.1 g85831.t1 - 0.0018 17.1 0.3 0.0022 16.9 0.2 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4071) | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:44914-45568 Augustus predicted protein sequence Tomato scaffold2823_contigs=1~44914-45568 DUF4388 PF14332.1 g74983.t1 - 0.12 12.1 0 9.6 6.1 0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4388) | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:63632-64081 Augustus predicted protein sequence Tomato scaffold2581_contigs=30~63632-64081 Beta-TrCP_D PF12125.3 g25451.t1 - 0.56 9.8 2.8 6 6.5 0.2 2.5 2 0 0 2 2 2 0 D domain of beta-TrCP | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:299248-300641 Augustus predicted protein sequence Tomato scaffold928_contigs=4~299248-300641 F-box-like PF12937.2 g82445.t1 - 0.34 10.6 5.9 0.48 10.1 0.2 2.3 2 0 0 2 2 2 0 F-box-like | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:73299-73652 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~73299-73652 DUF2561 PF10812.3 g365.t1 - 0.032 13.8 0 0.038 13.5 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) | Ref_seq=scaffold26_contigs=1, transcript_loc=scaffold26_contigs=1:1-516 Augustus predicted protein sequence Tomato scaffold26_contigs=1~1-516 DUF4172 PF13776.1 g26892.t1 - 0.0033 17.5 3.9 0.2 11.7 0.2 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4172) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:379470-382236 Augustus predicted protein sequence Tomato scaffold961_contigs=8~379470-382236 Tombus_movement PF05318.7 g14555.t1 - 0.0023 18.4 0.2 0.0041 17.7 0.1 1.4 1 0 0 1 1 1 1 Tombusvirus movement protein | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:112544-112897 Augustus predicted protein sequence Tomato scaffold597_contigs=5~112544-112897 MerR-DNA-bind PF09278.6 g42150.t1 - 0.025 14.9 0.4 0.025 14.9 0.3 3.3 3 2 1 4 4 4 0 MerR, DNA binding | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:183497-184619 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~183497-184619 zf-CCHC PF00098.18 g36476.t1 - 0.0032 17.3 0.3 0.0049 16.7 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:96253-96483 Augustus predicted protein sequence Tomato scaffold1196_contigs=5~96253-96483 RVT_3 PF13456.1 g32155.t1 - 0.0016 18.1 0.1 0.1 12.4 0 2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:599805-600062 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~599805-600062 Remorin_N PF03766.8 g66323.t1 - 0.037 13.8 1 0.063 13 0.7 1.4 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:34475-34940 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~34475-34940 T4_deiodinase PF00837.12 g22648.t1 - 0.051 12.5 0 0.59 9 0 2 1 1 1 2 2 2 0 Iodothyronine deiodinase | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:243647-243946 Augustus predicted protein sequence Tomato scaffold832_contigs=9~243647-243946 DUF936 PF06075.7 g12990.t1 - 0.1 11.5 0.2 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:49200-51509 Augustus predicted protein sequence Tomato scaffold562_contigs=3~49200-51509 RP1-2 PF12042.3 g56206.t1 - 0.046 13.3 6.9 0.054 13.1 4.8 1.1 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:54028-54673 Augustus predicted protein sequence Tomato scaffold1793_contigs=8~54028-54673 PBP_sp32 PF07222.7 g885.t1 - 0.0066 15.6 0.5 0.0066 15.6 0.3 1.2 1 0 0 1 1 1 1 Proacrosin binding protein sp32 | Ref_seq=scaffold178_contigs=2, transcript_loc=scaffold178_contigs=2:18307-18681 Augustus predicted protein sequence Tomato scaffold178_contigs=2~18307-18681 Glyco_hydro_17 PF00332.13 g17886.t1 - 0.11 11.5 0 0.12 11.3 0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 17 | Ref_seq=scaffold716_contigs=3, transcript_loc=scaffold716_contigs=3:25222-25455 Augustus predicted protein sequence Tomato scaffold716_contigs=3~25222-25455 ATHILA PF03078.10 g18091.t1 - 0.0000013 27.3 0 0.0000018 26.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:392523-393931 Augustus predicted protein sequence Tomato scaffold720_contigs=9~392523-393931 EBV-NA3 PF05009.7 g60285.t1 - 0.23 10.6 1.6 0.25 10.5 1.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1947_contigs=6, transcript_loc=scaffold1947_contigs=6:53780-54007 Augustus predicted protein sequence Tomato scaffold1947_contigs=6~53780-54007 DUF2660 PF10859.3 g2388.t1 - 0.031 14.4 0.1 0.054 13.7 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2660) | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:13118-13450 Augustus predicted protein sequence Tomato scaffold236_contigs=3~13118-13450 DUF936 PF06075.7 g69555.t1 - 0.095 11.6 0.1 0.087 11.7 0.1 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:113963-114319 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~113963-114319 C2-set_2 PF08205.7 g48768.t1 - 0.056 13.3 0.1 0.083 12.8 0.1 1.3 1 0 0 1 1 1 0 CD80-like C2-set immunoglobulin domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1078427-1078759 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~1078427-1078759 DUF4605 PF15378.1 g2406.t1 - 0.9 9.2 12.2 1.1 9 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4605) | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:44449-46395 Augustus predicted protein sequence Tomato scaffold237_contigs=4~44449-46395 DUF782 PF05614.6 g76498.t1 - 0.11 12.7 0 0.18 11.9 0 1.4 1 0 0 1 1 1 0 Circovirus protein of unknown function (DUF782) | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:35414-35942 Augustus predicted protein sequence Tomato scaffold2632_contigs=8~35414-35942 UPF0561 PF10573.4 g63494.t1 - 0.0011 18.7 5.7 0.27 11.1 0.2 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0561 | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:166841-167537 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~166841-167537 M20_dimer PF07687.9 g23074.t1 - 0.046 13.4 0.1 0.22 11.3 0 2 2 0 0 2 2 2 0 Peptidase dimerisation domain | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:56367-57527 Augustus predicted protein sequence Tomato scaffold848_contigs=10~56367-57527 Glyco_trans_4_3 PF12000.3 g27452.t1 - 0.02 14.5 0 0.025 14.2 0 1.2 1 0 0 1 1 1 0 Gkycosyl transferase family 4 group | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:167091-168793 Augustus predicted protein sequence Tomato scaffold980_contigs=13~167091-168793 RVT_2 PF07727.9 g74457.t1 - 0.0043 16 0.2 0.0054 15.7 0.2 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:111617-112033 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~111617-112033 CcmH PF03918.9 g83910.t1 - 0.073 12 0 0.16 10.9 0 1.5 1 0 0 1 1 1 0 Cytochrome C biogenesis protein | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:93357-94120 Augustus predicted protein sequence Tomato scaffold2762_contigs=5~93357-94120 zf-CCHC_5 PF14787.1 g81653.t1 - 0.0011 18.3 1.3 0.0021 17.5 0.9 1.5 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:398283-398558 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~398283-398558 UPF0506 PF11703.3 g37998.t1 - 1.6 8.7 7.4 4.7 7.2 5.2 1.8 1 1 0 1 1 1 0 UPF0506 | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:455145-460119 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~455145-460119 Trypan_PARP PF05887.6 g82582.t1 - 1.7 8.4 12.1 2.7 7.8 8.4 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:150417-150770 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~150417-150770 DUF3123 PF11321.3 g36783.t1 - 0.036 14.3 0.4 0.044 14 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3123) | Ref_seq=scaffold1208_contigs=2, transcript_loc=scaffold1208_contigs=2:39734-39958 Augustus predicted protein sequence Tomato scaffold1208_contigs=2~39734-39958 DUF3275 PF11679.3 g15482.t1 - 3.1 7.3 4.9 3 7.4 3.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold628_contigs=3, transcript_loc=scaffold628_contigs=3:10768-11037 Augustus predicted protein sequence Tomato scaffold628_contigs=3~10768-11037 DUF2215 PF10225.4 g29615.t1 - 0.0067 15.8 2.7 0.0088 15.5 1.9 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:262272-263968 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~262272-263968 DUF1218 PF06749.7 g34120.t1 - 0.11 13 0 0.14 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1218) | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:87711-89413 Augustus predicted protein sequence Tomato scaffold1142_contigs=5~87711-89413 SspN PF08177.6 g63324.t1 - 0.33 10.7 0 0.33 10.7 0 2.2 2 0 0 2 2 2 0 Small acid-soluble spore protein N family | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:265540-265788 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~265540-265788 ChW PF07538.6 g72388.t1 - 0.011 15.1 0.9 0.019 14.4 0.6 1.4 1 0 0 1 1 1 0 Clostridial hydrophobic W | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1263529-1263927 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1263529-1263927 Pyridox_oxidase PF01243.15 g7245.t1 - 0.12 12.3 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase | Ref_seq=scaffold390_contigs=8, transcript_loc=scaffold390_contigs=8:273892-276748 Augustus predicted protein sequence Tomato scaffold390_contigs=8~273892-276748 DUF605 PF04652.11 g321.t1 - 0.68 9.2 8.6 0.82 9 5.9 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:189075-195202 Augustus predicted protein sequence Tomato scaffold17_contigs=4~189075-195202 DUF1254 PF06863.7 g17805.t1 - 0.14 11.9 0 0.16 11.7 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1254) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:292213-292648 Augustus predicted protein sequence Tomato scaffold714_contigs=9~292213-292648 DUF4172 PF13776.1 g3425.t1 - 0.05 13.6 0 10 6.2 0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:24622-25710 Augustus predicted protein sequence Tomato scaffold271_contigs=10~24622-25710 DUF3551 PF12071.3 g68972.t1 - 0.049 13.1 0.3 11 5.6 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3551) | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:37637-38186 Augustus predicted protein sequence Tomato scaffold2237_contigs=22~37637-38186 PROL5-SMR PF15621.1 g75601.t1 - 0.92 9.9 6.4 2.3 8.6 0.2 2.1 1 1 1 2 2 2 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold2603_contigs=7, transcript_loc=scaffold2603_contigs=7:62394-62926 Augustus predicted protein sequence Tomato scaffold2603_contigs=7~62394-62926 DBD_Tnp_Mut PF03108.10 g59541.t1 - 0.00000031 29.8 0.6 0.00000059 28.9 0.3 1.6 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:176917-178132 Augustus predicted protein sequence Tomato scaffold1926_contigs=8~176917-178132 DUF4105 PF13387.1 g4813.t1 - 0.0056 15.8 0 0.0069 15.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4105) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:111094-111621 Augustus predicted protein sequence Tomato scaffold308_contigs=4~111094-111621 TMEM89 PF15098.1 g1250.t1 - 0.13 12.2 0.5 0.17 11.9 0.3 1.2 1 0 0 1 1 1 0 TMEM89 protein family | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:27746-27955 Augustus predicted protein sequence Tomato scaffold195_contigs=3~27746-27955 DMPK_coil PF08826.5 g21543.t1 - 0.033 14 2.4 0.098 12.5 1.7 1.7 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:230706-233313 Augustus predicted protein sequence Tomato scaffold800_contigs=2~230706-233313 Spectrin PF00435.16 g81015.t1 - 0.00016 21.9 1.1 0.0021 18.3 0.2 2 1 1 1 2 2 2 2 Spectrin repeat | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:218950-219207 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~218950-219207 Lactamase_B_3 PF13483.1 g61567.t1 - 0.11 12.2 0 0.18 11.5 0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:277634-279920 Augustus predicted protein sequence Tomato scaffold1971_contigs=11~277634-279920 THOC7 PF05615.8 g39932.t1 - 0.0047 17.2 7.3 0.17 12.1 0.8 2.3 2 0 0 2 2 2 2 Tho complex subunit 7 | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:65635-68594 Augustus predicted protein sequence Tomato scaffold1283_contigs=15~65635-68594 DUF3721 PF12518.3 g48793.t1 - 2.9 7.5 6.2 0.26 10.9 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:34400-34945 Augustus predicted protein sequence Tomato scaffold1507_contigs=2~34400-34945 DUF2963 PF11178.3 g45336.t1 - 0.016 14.6 0.2 0.029 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:877629-879029 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~877629-879029 Antimicrobial12 PF08107.6 g28034.t1 - 0.041 13.4 0.5 0.071 12.6 0.4 1.3 1 0 0 1 1 1 0 Pleurocidin family | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:62219-62494 Augustus predicted protein sequence Tomato scaffold990_contigs=6~62219-62494 NESP55 PF06390.7 g30696.t1 - 1.4 8.2 7.2 3.8 6.8 5 1.8 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:87255-88829 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~87255-88829 Tobravirus_2B PF05271.6 g50740.t1 - 0.022 14.4 0 0.035 13.8 0 1.3 1 0 0 1 1 1 0 Tobravirus 2B protein | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:370630-371158 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~370630-371158 Cyt_c_ox_IV PF12270.3 g22048.t1 - 0.065 12.9 0.1 0.098 12.4 0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:736991-743002 Augustus predicted protein sequence Tomato scaffold817_contigs=11~736991-743002 Zn_dep_PLPC PF00882.13 g82696.t1 - 0.055 13.1 0 0.074 12.6 0 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C | Ref_seq=scaffold2748_contigs=28, transcript_loc=scaffold2748_contigs=28:33805-36237 Augustus predicted protein sequence Tomato scaffold2748_contigs=28~33805-36237 CsgG PF03783.9 g50682.t1 - 0.063 12.3 0 0.086 11.9 0 1.1 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:156340-156991 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~156340-156991 DUF1347 PF07079.6 g58608.t1 - 0.037 12.2 0 0.042 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:588475-588909 Augustus predicted protein sequence Tomato scaffold1864_contigs=28~588475-588909 DUF2366 PF10171.4 g23580.t1 - 0.021 14.3 0.1 0.028 13.9 0 1.2 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2366) | Ref_seq=scaffold864_contigs=13, transcript_loc=scaffold864_contigs=13:25415-25935 Augustus predicted protein sequence Tomato scaffold864_contigs=13~25415-25935 Pilt PF15453.1 g13748.t1 - 2.1 7.9 4.2 2.7 7.5 2.9 1.2 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:28122-28616 Augustus predicted protein sequence Tomato scaffold582_contigs=8~28122-28616 MutS_II PF05188.12 g86569.t1 - 0.014 15.4 0.1 1.1 9.2 0 2.2 2 0 0 2 2 2 0 MutS domain II | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:21136-22250 Augustus predicted protein sequence Tomato scaffold2873_contigs=1~21136-22250 ATHILA PF03078.10 g67080.t1 - 0.0023 16.5 0.2 0.003 16.2 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:747318-748348 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~747318-748348 IFT57 PF10498.4 g26041.t1 - 0.000054 22.1 5 0.000064 21.8 3.5 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:231590-232942 Augustus predicted protein sequence Tomato scaffold942_contigs=10~231590-232942 DUF2537 PF10801.3 g39902.t1 - 4.5 7.4 13.9 0.46 10.6 4.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2537) | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:9262-12208 Augustus predicted protein sequence Tomato scaffold1281_contigs=3~9262-12208 Daxx PF03344.10 g37422.t1 - 0.43 9 22.7 0.52 8.7 15.8 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:202513-204001 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~202513-204001 MRP-S22 PF10245.4 g62500.t1 - 0.13 11.6 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:309032-309403 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~309032-309403 ATHILA PF03078.10 g4180.t1 - 0.0001 21 2.1 0.0031 16.1 0.9 2.5 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:240625-241629 Augustus predicted protein sequence Tomato scaffold293_contigs=5~240625-241629 DpnD-PcfM PF14207.1 g28787.t1 - 0.17 11.6 1.6 0.37 10.5 1.1 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:329688-330263 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~329688-330263 Pox_A22 PF04848.8 g29882.t1 - 0.14 12 0 0.17 11.7 0 1.2 1 0 0 1 1 1 0 Poxvirus A22 protein | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:145992-146489 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~145992-146489 TILa PF12714.2 g80439.t1 - 0.13 12 1 5.6 6.8 0 2 1 1 1 2 2 2 0 TILa domain | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:484360-484578 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~484360-484578 DUF4510 PF14971.1 g47265.t1 - 0.0042 17.2 1 0.0048 17.1 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4510) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:20921-21229 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~20921-21229 Trypan_PARP PF05887.6 g5072.t1 - 8.8 6.1 19.1 2.4 7.9 11.1 1.5 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:276297-283868 Augustus predicted protein sequence Tomato scaffold315_contigs=11~276297-283868 Gamma-thionin PF00304.15 g45276.t1 - 2.4E-011 43.4 12.1 4.1E-011 42.7 8.4 1.4 1 0 0 1 1 1 1 Gamma-thionin family | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:605406-605906 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~605406-605906 Ribosomal_L23eN PF03939.8 g15320.t1 - 0.014 15.4 1.7 0.023 14.7 1.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L23, N-terminal domain | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:109109-109450 Augustus predicted protein sequence Tomato scaffold624_contigs=9~109109-109450 DUF4290 PF14123.1 g52160.t1 - 0.057 12.6 0.1 0.091 11.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:264697-265471 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~264697-265471 Spp-24 PF07448.6 g49955.t1 - 0.082 12.8 0.3 0.37 10.7 0.2 1.8 1 1 0 1 1 1 0 Secreted phosphoprotein 24 (Spp-24) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:770243-770599 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~770243-770599 Phage_fiber_C PF06820.7 g28149.t1 - 0.041 14 0 2.2 8.5 0 2.2 2 0 0 2 2 2 0 Putative prophage tail fibre C-terminus | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:150119-151973 Augustus predicted protein sequence Tomato scaffold992_contigs=3~150119-151973 MCC-bdg_PDZ PF10506.4 g75775.t1 - 0.018 14.8 2.4 0.03 14.1 1.7 1.4 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:87317-87832 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~87317-87832 PEARLI-4 PF05278.7 g83294.t1 - 0.0001 21.7 2.2 0.00012 21.5 1.5 1.1 1 0 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:148141-148861 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~148141-148861 HALZ PF02183.13 g7165.t1 - 0.031 13.9 14.2 0.06 13 0.6 3.8 2 1 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:309261-310307 Augustus predicted protein sequence Tomato scaffold387_contigs=7~309261-310307 Ribosomal_S13 PF00416.17 g46417.t1 - 0.13 12.7 0.2 0.18 12.2 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S13/S18 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:50986-51636 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~50986-51636 Delta_lysin PF05372.6 g49707.t1 - 0.045 13.1 0 0.075 12.4 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:52735-57035 Augustus predicted protein sequence Tomato scaffold1548_contigs=4~52735-57035 zf-BED PF02892.10 g71959.t1 - 0.014 15.1 1.8 0.032 13.9 1.2 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:468207-472056 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~468207-472056 PBP1_TM PF14812.1 g17036.t1 - 0.012 15.9 1.9 0.016 15.4 1.3 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold691_contigs=5, transcript_loc=scaffold691_contigs=5:73331-74073 Augustus predicted protein sequence Tomato scaffold691_contigs=5~73331-74073 Pox_A6 PF04924.7 g4114.t1 - 0.079 11.7 0 0.11 11.2 0 1.1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:32205-32825 Augustus predicted protein sequence Tomato scaffold293_contigs=5~32205-32825 DUF3634 PF12321.3 g71322.t1 - 0.14 12.1 0.8 0.15 12 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3634) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:378152-378358 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~378152-378358 PT-VENN PF04829.8 g19128.t1 - 0.00016 21.1 1 0.42 10.1 0 2.2 2 0 0 2 2 2 2 Pre-toxin domain with VENN motif | Ref_seq=scaffold745_contigs=9, transcript_loc=scaffold745_contigs=9:13756-14297 Augustus predicted protein sequence Tomato scaffold745_contigs=9~13756-14297 GARS_C PF02843.11 g80383.t1 - 0.064 13.4 0.5 0.068 13.3 0.3 1.1 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:162490-162831 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~162490-162831 DUF2457 PF10446.4 g45965.t1 - 0.012 14.3 14.1 0.011 14.4 9.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:402189-402464 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~402189-402464 DUF2888 PF11135.3 g3708.t1 - 0.023 14.4 0 0.029 14 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:217725-218342 Augustus predicted protein sequence Tomato scaffold280_contigs=12~217725-218342 B3_4 PF03483.12 g47006.t1 - 0.084 12.3 0.1 0.13 11.6 0 1.2 1 0 0 1 1 1 0 B3/4 domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:90714-93108 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~90714-93108 VIGSSK PF14773.1 g82860.t1 - 0.047 13.6 0.5 0.13 12.2 0.1 2 2 0 0 2 2 2 0 Helicase-associated putative binding domain, C-terminal | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:60990-61490 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~60990-61490 IBB PF01749.15 g644.t1 - 0.55 10.4 3 0.3 11.2 0.2 1.9 2 0 0 2 2 2 0 Importin beta binding domain | Ref_seq=scaffold87_contigs=1, transcript_loc=scaffold87_contigs=1:8799-10091 Augustus predicted protein sequence Tomato scaffold87_contigs=1~8799-10091 MEA1 PF06910.6 g20601.t1 - 0.068 12.8 0.5 0.089 12.4 0.4 1.2 1 0 0 1 1 1 0 Male enhanced antigen 1 (MEA1) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:7173-7847 Augustus predicted protein sequence Tomato scaffold777_contigs=4~7173-7847 DUF1347 PF07079.6 g27483.t1 - 0.052 11.7 0 0.058 11.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:240377-240661 Augustus predicted protein sequence Tomato scaffold980_contigs=13~240377-240661 ATHILA PF03078.10 g13950.t1 - 0.00000013 30.6 0 0.00000015 30.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:6471-7100 Augustus predicted protein sequence Tomato scaffold583_contigs=2~6471-7100 DUF730 PF05325.6 g75169.t1 - 0.083 12.6 0.2 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF730) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:588663-588992 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~588663-588992 ATHILA PF03078.10 g77339.t1 - 0.0041 15.7 0 0.0041 15.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:64050-64301 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~64050-64301 Cut8_N PF14482.1 g62405.t1 - 0.14 12.1 4.1 0.74 9.8 0.2 2.7 2 0 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:71443-75913 Augustus predicted protein sequence Tomato scaffold1993_contigs=21~71443-75913 Macoilin PF09726.4 g75981.t1 - 0.2 9.9 5.4 0.21 9.8 3.8 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:196401-197171 Augustus predicted protein sequence Tomato scaffold2615_contigs=8~196401-197171 Spore-coat_CotD PF11122.3 g34529.t1 - 0.14 12.5 0.6 0.18 12.1 0.4 1.3 1 0 0 1 1 1 0 Inner spore coat protein D | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:126945-127232 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~126945-127232 p47_phox_C PF08944.6 g69970.t1 - 0.19 11.9 2.3 0.36 11 1.6 1.4 1 0 0 1 1 1 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:56519-56896 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~56519-56896 DUF2743 PF10899.3 g20613.t1 - 0.056 12.8 0.2 0.058 12.7 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:26090-26455 Augustus predicted protein sequence Tomato scaffold777_contigs=4~26090-26455 HALZ PF02183.13 g30001.t1 - 0.00017 21.2 4.4 0.00017 21.2 3 1.7 2 0 0 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:145349-146096 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~145349-146096 IFT57 PF10498.4 g3458.t1 - 0.00093 18 0.3 0.0011 17.7 0.2 1.3 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:52681-53139 Augustus predicted protein sequence Tomato scaffold272_contigs=1~52681-53139 GRP PF07172.6 g69633.t1 - 0.0052 17.2 11.4 0.0067 16.8 7.9 1.2 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:400814-401170 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~400814-401170 AKAP2_C PF15304.1 g80918.t1 - 1.3 8.5 15.5 1.7 8.2 10.8 1.2 1 0 0 1 1 1 0 A-kinase anchor protein 2 C-terminus | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:282588-282812 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~282588-282812 DUF2360 PF10152.4 g27251.t1 - 0.0014 18.8 1.3 0.0021 18.3 0.9 1.3 1 1 0 1 1 1 1 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:145267-145782 Augustus predicted protein sequence Tomato scaffold974_contigs=15~145267-145782 FA_hydroxylase PF04116.8 g68374.t1 - 0.067 13.5 5.8 0.092 13.1 4 1.3 1 0 0 1 1 1 0 Fatty acid hydroxylase superfamily | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:215694-215987 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~215694-215987 Herpes_UL36 PF03586.8 g44373.t1 - 0.13 11.3 0.1 0.18 10.8 0 1.2 1 0 0 1 1 1 0 Herpesvirus UL36 tegument protein | Ref_seq=scaffold1427_contigs=8, transcript_loc=scaffold1427_contigs=8:87442-89839 Augustus predicted protein sequence Tomato scaffold1427_contigs=8~87442-89839 NAM-associated PF14303.1 g68461.t1 - 0.00000029 30.9 0.3 0.00000034 30.6 0.2 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:286572-287998 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~286572-287998 VWA_3 PF13768.1 g56614.t1 - 0.11 12.2 0 0.17 11.5 0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:567755-569519 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~567755-569519 DUF2694 PF10904.3 g43383.t1 - 0.063 13.2 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:295487-297433 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~295487-297433 DUF4607 PF15380.1 g73829.t1 - 0.038 13.4 0.3 2.1 7.6 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4607) | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:117572-118788 Augustus predicted protein sequence Tomato scaffold2510_contigs=23~117572-118788 Pentapeptide_3 PF13576.1 g72287.t1 - 0.0019 18 0.1 0.0047 16.7 0.1 1.6 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:954670-954990 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~954670-954990 DUF2442 PF10387.4 g7699.t1 - 0.15 12.1 0 0.2 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2442) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:217898-219427 Augustus predicted protein sequence Tomato scaffold405_contigs=10~217898-219427 DIM PF08194.7 g64311.t1 - 0.13 12.2 0.1 0.13 12.2 0.1 2.6 3 0 0 3 3 3 0 DIM protein | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:442853-443203 Augustus predicted protein sequence Tomato scaffold2057_contigs=11~442853-443203 ATHILA PF03078.10 g48342.t1 - 0.0015 17.1 0 0.04 12.5 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:50754-51077 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~50754-51077 DUF2743 PF10899.3 g75694.t1 - 0.025 13.9 1.6 0.96 8.7 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:6682-8587 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~6682-8587 ESR1_C PF12743.2 g17298.t1 - 0.036 13.6 0.3 0.036 13.6 0.2 2.3 2 0 0 2 2 2 0 Oestrogen-type nuclear receptor final C-terminal | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:66965-67366 Augustus predicted protein sequence Tomato scaffold703_contigs=10~66965-67366 Tropomyosin PF00261.15 g23737.t1 - 0.078 12 0 0.098 11.7 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:170862-171275 Augustus predicted protein sequence Tomato scaffold865_contigs=7~170862-171275 ASL_C2 PF14698.1 g42845.t1 - 0.045 13.8 0 0.065 13.3 0 1.3 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:244625-244888 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~244625-244888 WH2 PF02205.15 g43468.t1 - 0.082 12.5 0.4 5 6.8 0.2 2.5 2 0 0 2 2 2 0 WH2 motif | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:164920-165942 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~164920-165942 CDC24 PF06395.6 g38580.t1 - 0.016 15.2 0.2 0.029 14.4 0.2 1.4 1 1 0 1 1 1 0 CDC24 Calponin | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:770934-771706 Augustus predicted protein sequence Tomato scaffold1247_contigs=21~770934-771706 DUF2890 PF11081.3 g10415.t1 - 0.036 14.1 0.8 0.059 13.4 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:115726-116043 Augustus predicted protein sequence Tomato scaffold498_contigs=12~115726-116043 Cut8_N PF14482.1 g32569.t1 - 0.1 12.5 0.3 0.15 12 0.2 1.3 1 0 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:230942-231685 Augustus predicted protein sequence Tomato scaffold1107_contigs=16~230942-231685 zinc_ribbon_5 PF13719.1 g75754.t1 - 0.13 11.8 1 0.34 10.5 0 2.2 3 0 0 3 3 3 0 zinc-ribbon domain | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:228413-229977 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~228413-229977 DUF1285 PF06938.6 g34589.t1 - 0.017 15.1 0 0.018 15 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1285) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:358019-358297 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~358019-358297 B12-binding PF02310.14 g15652.t1 - 0.07 13 0 0.11 12.3 0 1.2 1 0 0 1 1 1 0 B12 binding domain | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:8935-9345 Augustus predicted protein sequence Tomato scaffold639_contigs=2~8935-9345 HALZ PF02183.13 g42883.t1 - 0.032 13.9 3.1 0.081 12.6 1.7 2 1 1 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:39948-40406 Augustus predicted protein sequence Tomato scaffold1375_contigs=5~39948-40406 Lectin_N PF03954.9 g31759.t1 - 0.0052 16.2 0.1 0.0075 15.6 0.1 1.1 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:26196-27022 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~26196-27022 DUF320 PF03777.8 g69978.t1 - 0.042 13.6 0 0.07 12.9 0 1.3 1 0 0 1 1 1 0 Small secreted domain (DUF320) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:100725-101912 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~100725-101912 Mu-like_Pro PF10123.4 g85591.t1 - 0.014 14.9 2.1 0.015 14.7 1.5 1.1 1 0 0 1 1 1 0 Mu-like prophage I protein | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:50898-51727 Augustus predicted protein sequence Tomato scaffold2810_contigs=1~50898-51727 DmpG_comm PF07836.6 g29772.t1 - 0.089 12.2 0 0.16 11.4 0 1.4 1 0 0 1 1 1 0 DmpG-like communication domain | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:47405-47983 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~47405-47983 MULE PF10551.4 g13122.t1 - 0.0019 18.3 0 0.0047 17 0 1.7 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:402801-403863 Augustus predicted protein sequence Tomato scaffold568_contigs=22~402801-403863 BCIP PF13862.1 g83407.t1 - 0.034 13.6 0.3 0.036 13.5 0.2 1.1 1 0 0 1 1 1 0 p21-C-terminal region-binding protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:346036-346257 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~346036-346257 DUF1116 PF06545.6 g25108.t1 - 0.097 11.7 0 0.12 11.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1116) | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:148794-149054 Augustus predicted protein sequence Tomato scaffold914_contigs=7~148794-149054 HOOK PF05622.7 g40887.t1 - 0.13 10 0.2 0.16 9.7 0.1 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:20114-20374 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~20114-20374 TP2 PF01254.13 g9617.t1 - 0.012 15.9 1 0.028 14.7 0.7 1.6 1 0 0 1 1 1 0 Nuclear transition protein 2 | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:206825-209116 Augustus predicted protein sequence Tomato scaffold462_contigs=7~206825-209116 ATHILA PF03078.10 g63304.t1 - 0.000011 24.2 0 0.000014 23.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:161586-162182 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~161586-162182 DUF3943 PF13084.1 g3151.t1 - 0.16 11.5 0.1 9.8 5.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3943) | Ref_seq=scaffold260_contigs=3, transcript_loc=scaffold260_contigs=3:6071-8443 Augustus predicted protein sequence Tomato scaffold260_contigs=3~6071-8443 Sugarporin_N PF11471.3 g24440.t1 - 0.074 12.7 1.3 0.12 12 0.9 1.2 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:596821-597126 Augustus predicted protein sequence Tomato scaffold880_contigs=9~596821-597126 IL5 PF02025.10 g49264.t1 - 0.092 12.7 0 0.11 12.5 0 1.2 1 0 0 1 1 1 0 Interleukin 5 | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:38030-40713 Augustus predicted protein sequence Tomato scaffold1531_contigs=12~38030-40713 DUF35_N PF12172.3 g85618.t1 - 0.089 12.7 0.8 6.1 6.8 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:4516-6378 Augustus predicted protein sequence Tomato scaffold2812_contigs=1~4516-6378 uDENN PF03456.13 g81499.t1 - 0.00031 20.6 0.2 0.058 13.3 0 2.6 3 0 0 3 3 3 2 uDENN domain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:391288-392466 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~391288-392466 DUF1032 PF06278.6 g85191.t1 - 0.036 12.5 0.2 0.038 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:90639-91230 Augustus predicted protein sequence Tomato scaffold2793_contigs=1~90639-91230 Ribosomal_60s PF00428.14 g82240.t1 - 0.053 13.9 4.6 0.061 13.7 3.2 1.2 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2739_contigs=11, transcript_loc=scaffold2739_contigs=11:133490-133690 Augustus predicted protein sequence Tomato scaffold2739_contigs=11~133490-133690 CENP-F_leu_zip PF10473.4 g22051.t1 - 0.06 13.2 2.9 0.12 12.2 2 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:770130-775998 Augustus predicted protein sequence Tomato scaffold817_contigs=11~770130-775998 RVT_3 PF13456.1 g3536.t1 - 0.021 14.5 0 0.04 13.6 0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold276_contigs=2, transcript_loc=scaffold276_contigs=2:17790-20327 Augustus predicted protein sequence Tomato scaffold276_contigs=2~17790-20327 Ribosomal_L17 PF01196.14 g6015.t1 - 0.074 13.6 0.1 0.17 12.5 0.1 1.6 1 1 0 1 1 1 0 Ribosomal protein L17 | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:48125-48403 Augustus predicted protein sequence Tomato scaffold346_contigs=1~48125-48403 Ribosomal_L15e PF00827.12 g83880.t1 - 0.0016 17.9 0.5 0.0016 17.9 0.4 1.4 2 0 0 2 2 2 1 Ribosomal L15 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2171778-2172185 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~2171778-2172185 zf-CCHC PF00098.18 g39727.t1 - 0.0014 18.4 2.3 0.003 17.3 1.6 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:96613-97674 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~96613-97674 RE_ScaI PF09569.5 g81006.t1 - 0.033 13.6 0 0.035 13.5 0 1.1 1 0 0 1 1 1 0 ScaI restriction endonuclease | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:195394-195769 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~195394-195769 Ribosomal_S28e PF01200.13 g37143.t1 - 0.027 14.1 1.3 0.041 13.6 0.8 1.5 1 1 0 1 1 1 0 Ribosomal protein S28e | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:451346-454144 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~451346-454144 Tim54 PF11711.3 g37757.t1 - 0.015 13.9 3 0.018 13.6 2.1 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:224828-225586 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~224828-225586 DUF3040 PF11239.3 g80733.t1 - 8.7 6.4 7.4 4.8 7.2 3.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:119982-120521 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~119982-120521 TTKRSYEDQ PF10212.4 g73288.t1 - 0.052 12.4 0 0.055 12.3 0 1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold2448_contigs=3, transcript_loc=scaffold2448_contigs=3:78264-78518 Augustus predicted protein sequence Tomato scaffold2448_contigs=3~78264-78518 Pinin_SDK_N PF04697.8 g54590.t1 - 0.025 14.6 1.4 0.035 14.1 0.9 1.2 1 0 0 1 1 1 0 pinin/SDK conserved region | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:127462-128002 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~127462-128002 Minor_capsid_3 PF12691.2 g866.t1 - 0.096 12.3 0 0.11 12.2 0 1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold167_contigs=1, transcript_loc=scaffold167_contigs=1:1-405 Augustus predicted protein sequence Tomato scaffold167_contigs=1~1-405 DUF3323 PF11796.3 g5787.t1 - 0.085 12.1 0 1.5 8.1 0 2 2 0 0 2 2 2 0 Protein of unknown function N-terminus (DUF3323) | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:222451-223004 Augustus predicted protein sequence Tomato scaffold338_contigs=10~222451-223004 FH2 PF02181.18 g85648.t1 - 0.032 13.1 0.2 0.046 12.6 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2813_contigs=1, transcript_loc=scaffold2813_contigs=1:19651-21240 Augustus predicted protein sequence Tomato scaffold2813_contigs=1~19651-21240 DUF1832 PF08870.6 g21548.t1 - 0.11 12.2 0 0.91 9.2 0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1832) | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:12098-16234 Augustus predicted protein sequence Tomato scaffold801_contigs=2~12098-16234 XK-related PF09815.4 g83550.t1 - 0.063 12.2 1.5 0.064 12.2 0.7 1.3 1 1 0 1 1 1 0 XK-related protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:909349-909762 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~909349-909762 YabP PF07873.6 g3606.t1 - 0.045 13.3 0 0.065 12.7 0 1.3 1 0 0 1 1 1 0 YabP family | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:169871-170188 Augustus predicted protein sequence Tomato scaffold278_contigs=5~169871-170188 Radical_SAM PF04055.16 g73906.t1 - 0.11 12.7 0 0.12 12.4 0 1.2 1 0 0 1 1 1 0 Radical SAM superfamily | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:171956-174273 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~171956-174273 NgoMIV_restric PF09015.5 g17241.t1 - 0.23 10.3 1.7 0.77 8.7 0 2 1 1 1 2 2 2 0 NgoMIV restriction enzyme | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:93304-98925 Augustus predicted protein sequence Tomato scaffold701_contigs=5~93304-98925 Tim54 PF11711.3 g68233.t1 - 2.2 6.7 5.8 2.4 6.6 4 1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:237182-237502 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~237182-237502 RVP_2 PF08284.6 g73935.t1 - 0.000024 24.3 0.1 0.000032 23.8 0.1 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:268490-268963 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~268490-268963 DUF4219 PF13961.1 g51943.t1 - 0.0029 16.9 0.3 0.0054 16.1 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:50945-51268 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~50945-51268 EspA PF03433.8 g46090.t1 - 0.022 14.1 1.1 0.33 10.3 0 2.9 3 1 0 3 3 3 0 EspA-like secreted protein | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:32457-34953 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~32457-34953 zf-CCHC PF00098.18 g6688.t1 - 0.0077 16.1 0.4 0.012 15.4 0.3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:288309-288718 Augustus predicted protein sequence Tomato scaffold380_contigs=11~288309-288718 DUF3070 PF11270.3 g49063.t1 - 0.081 12.6 0.9 0.14 11.9 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold1521_contigs=7, transcript_loc=scaffold1521_contigs=7:100516-101114 Augustus predicted protein sequence Tomato scaffold1521_contigs=7~100516-101114 Retrotrans_gag PF03732.12 g80632.t1 - 0.008 16.2 0 0.012 15.6 0 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:102742-104102 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~102742-104102 PARG_cat PF05028.9 g38436.t1 - 0.14 11.3 0 0.15 11.3 0 1.1 1 0 0 1 1 1 0 Poly (ADP-ribose) glycohydrolase (PARG) | Ref_seq=scaffold1244_contigs=5, transcript_loc=scaffold1244_contigs=5:36378-36695 Augustus predicted protein sequence Tomato scaffold1244_contigs=5~36378-36695 LEAP-2 PF07359.6 g79956.t1 - 0.015 14.9 2.4 0.02 14.5 1.6 1.4 1 1 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:292950-294667 Augustus predicted protein sequence Tomato scaffold2704_contigs=20~292950-294667 zf-C4 PF00105.13 g40384.t1 - 0.052 13.7 1.8 4.5 7.5 0.2 2.8 1 1 2 3 3 3 0 Zinc finger, C4 type (two domains) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:20482-20940 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~20482-20940 CAF-1_p150 PF11600.3 g56593.t1 - 0.00016 21.1 24.8 0.00016 21.1 17.2 2.8 2 0 0 2 2 2 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:480064-482484 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~480064-482484 IDO PF01231.13 g45492.t1 - 0.049 12 0.1 0.072 11.5 0.1 1.2 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:14799-15605 Augustus predicted protein sequence Tomato scaffold1448_contigs=3~14799-15605 PHB_acc_N PF07879.6 g87168.t1 - 0.026 14.2 0 0.038 13.7 0 1.2 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain | Ref_seq=scaffold2947_contigs=1, transcript_loc=scaffold2947_contigs=1:7304-7689 Augustus predicted protein sequence Tomato scaffold2947_contigs=1~7304-7689 Cu2_monoox_C PF03712.10 g26027.t1 - 0.028 13.7 0 0.034 13.4 0 1.1 1 0 0 1 1 1 0 Copper type II ascorbate-dependent monooxygenase, C-terminal domain | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:201717-202004 Augustus predicted protein sequence Tomato scaffold942_contigs=10~201717-202004 Serendipity_A PF05482.7 g25978.t1 - 0.073 11.4 0.4 0.085 11.2 0.3 1 1 0 0 1 1 1 0 Serendipity locus alpha protein (SRY-A) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:134592-135038 Augustus predicted protein sequence Tomato scaffold941_contigs=6~134592-135038 VWD PF00094.20 g52546.t1 - 0.1 12.7 0 0.11 12.6 0 1.1 1 0 0 1 1 1 0 von Willebrand factor type D domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:388633-389009 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~388633-389009 TORC_N PF12884.2 g48045.t1 - 0.058 13.9 0.3 0.12 12.9 0.2 1.5 1 0 0 1 1 1 0 Transducer of regulated CREB activity, N terminus | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:466251-467975 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~466251-467975 Metallothio_11 PF02066.10 g3832.t1 - 2.1 8.2 6.9 0.35 10.7 1.5 1.9 2 0 0 2 2 2 0 Metallothionein family 11 | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:221051-221296 Augustus predicted protein sequence Tomato scaffold281_contigs=6~221051-221296 DUF4157 PF13699.1 g53122.t1 - 0.0076 16.3 6.1 0.18 11.9 0.5 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4157) | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:21604-23155 Augustus predicted protein sequence Tomato scaffold1675_contigs=9~21604-23155 CheF-arch PF04283.7 g65018.t1 - 0.028 13.6 0 5.5 6.1 0 2.2 2 0 0 2 2 2 0 Chemotaxis signal transduction system protein F from archaea | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:86498-89979 Augustus predicted protein sequence Tomato scaffold2109_contigs=23~86498-89979 DUF552 PF04472.7 g62333.t1 - 0.13 12.1 0.4 1.6 8.7 0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF552) | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:58430-60255 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~58430-60255 PEARLI-4 PF05278.7 g43282.t1 - 1.3 8.2 5 0.3 10.4 1.5 1.4 2 0 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:357226-357801 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~357226-357801 DUF2944 PF11161.3 g43196.t1 - 0.057 13 0 0.089 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:41130-44333 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~41130-44333 FH2 PF02181.18 g3903.t1 - 0.014 14.2 0.1 0.017 14 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:536-913 Augustus predicted protein sequence Tomato scaffold283_contigs=2~536-913 DUF2743 PF10899.3 g45412.t1 - 0.039 13.3 2.4 0.054 12.8 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:168536-169555 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~168536-169555 Peptidase_S46 PF10459.4 g82967.t1 - 0.0058 15.1 0.9 0.0061 15 0.6 1 1 0 0 1 1 1 1 Peptidase S46 | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:8954-9856 Augustus predicted protein sequence Tomato scaffold2753_contigs=11~8954-9856 Gemini_mov PF01708.11 g10970.t1 - 0.068 12.7 1.2 0.19 11.3 0 2 2 0 0 2 2 2 0 Geminivirus putative movement protein | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:96583-98899 Augustus predicted protein sequence Tomato scaffold510_contigs=5~96583-98899 IL13 PF03487.8 g15605.t1 - 1.8 8.3 3.7 1.8 8.3 1.5 1.8 1 1 0 1 1 1 0 Interleukin-13 | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:108173-108628 Augustus predicted protein sequence Tomato scaffold635_contigs=5~108173-108628 Med29 PF11568.3 g66694.t1 - 0.066 13.2 0.3 0.08 12.9 0.2 1.1 1 0 0 1 1 1 0 Mediator complex subunit 29 | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:79835-80248 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~79835-80248 Pollen_allerg_1 PF01357.16 g77174.t1 - 0.16 11.7 0.7 8.3 6.2 0 2.6 3 0 0 3 3 3 0 Pollen allergen | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:336124-337419 Augustus predicted protein sequence Tomato scaffold2650_contigs=9~336124-337419 DUF2610 PF11020.3 g86349.t1 - 0.069 12.9 0 0.1 12.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) | Ref_seq=scaffold2853_contigs=1, transcript_loc=scaffold2853_contigs=1:21596-22107 Augustus predicted protein sequence Tomato scaffold2853_contigs=1~21596-22107 Ferric_reduct PF01794.14 g86661.t1 - 0.04 14 4.2 0.059 13.4 2.9 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component | Ref_seq=scaffold2880_contigs=1, transcript_loc=scaffold2880_contigs=1:24596-26072 Augustus predicted protein sequence Tomato scaffold2880_contigs=1~24596-26072 RCSD PF05177.7 g66831.t1 - 3.9 8 7.7 3.8 8 3.9 2 1 1 1 2 2 2 0 RCSD region | Ref_seq=scaffold2171_contigs=2, transcript_loc=scaffold2171_contigs=2:26015-26704 Augustus predicted protein sequence Tomato scaffold2171_contigs=2~26015-26704 DUF1972 PF09314.6 g65429.t1 - 0.068 12.6 0.9 0.69 9.3 0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF1972) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:509524-514571 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~509524-514571 Ribonuclease_3 PF00636.21 g8672.t1 - 0.13 12.6 0.1 0.28 11.6 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease III domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:434890-436260 Augustus predicted protein sequence Tomato scaffold429_contigs=9~434890-436260 DUF2894 PF11445.3 g16741.t1 - 0.052 13.8 0.7 0.065 13.4 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:11283-11729 Augustus predicted protein sequence Tomato scaffold679_contigs=3~11283-11729 BDM PF10684.4 g65103.t1 - 0.15 12.2 0 28 5 0 2.4 2 0 0 2 2 2 0 Putative biofilm-dependent modulation protein | Ref_seq=scaffold2114_contigs=7, transcript_loc=scaffold2114_contigs=7:4406-8515 Augustus predicted protein sequence Tomato scaffold2114_contigs=7~4406-8515 PIP49_N PF14875.1 g87729.t1 - 0.011 15.3 2.9 1.8 8.2 0.1 2.1 1 1 1 2 2 2 0 N-term cysteine-rich ER, FAM69 | Ref_seq=scaffold3807_contigs=1, transcript_loc=scaffold3807_contigs=1:63-1061 Augustus predicted protein sequence Tomato scaffold3807_contigs=1~63-1061 zf-CCHC PF00098.18 g49728.t1 - 0.068 13.1 5.1 0.11 12.5 3.5 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:33526-33786 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~33526-33786 Se-cys_synth_N PF12390.3 g10312.t1 - 0.078 13 0 0.11 12.5 0 1.3 1 0 0 1 1 1 0 Selenocysteine synthase N terminal | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:172940-173236 Augustus predicted protein sequence Tomato scaffold494_contigs=9~172940-173236 DUF2462 PF09495.5 g60467.t1 - 0.033 14.9 1.7 0.033 14.9 1.2 3.6 2 1 0 3 3 3 0 Protein of unknown function (DUF2462) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:245011-247160 Augustus predicted protein sequence Tomato scaffold1951_contigs=6~245011-247160 TEX19 PF15553.1 g11832.t1 - 1.6 8.5 5.1 1.9 8.3 3.5 1 1 0 0 1 1 1 0 Testis-expressed protein 19 | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:887594-888207 Augustus predicted protein sequence Tomato scaffold529_contigs=26~887594-888207 IFP_35_N PF07334.8 g29611.t1 - 0.06 13.3 0.4 0.11 12.4 0.3 1.5 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:254981-255268 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~254981-255268 Fzo_mitofusin PF04799.8 g83830.t1 - 0.013 14.9 3 0.016 14.6 2.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1964833-1965288 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1964833-1965288 Toprim_Crpt PF13342.1 g66809.t1 - 0.077 12.6 0.1 13 5.4 0 2.3 2 0 0 2 2 2 0 C-terminal repeat of topoisomerase | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:91232-91609 Augustus predicted protein sequence Tomato scaffold2170_contigs=8~91232-91609 CortBP2 PF09727.4 g2805.t1 - 0.032 13.7 0.1 0.038 13.5 0.1 1 1 0 0 1 1 1 0 Cortactin-binding protein-2 | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:35668-35883 Augustus predicted protein sequence Tomato scaffold255_contigs=10~35668-35883 PAT1 PF09770.4 g77567.t1 - 3.4 5.7 11 3.9 5.5 7.6 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:31569-33989 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~31569-33989 GCR1_C PF12550.3 g41409.t1 - 0.022 14.6 0.1 0.033 14 0 1.3 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:47523-50174 Augustus predicted protein sequence Tomato scaffold1332_contigs=3~47523-50174 ADIP PF11559.3 g41539.t1 - 0.0015 18.4 1.5 0.002 18 1 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:57704-58033 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~57704-58033 Peptidase_S46 PF10459.4 g17612.t1 - 0.12 10.8 1 0.12 10.7 0.7 1.1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold711_contigs=2, transcript_loc=scaffold711_contigs=2:374-2566 Augustus predicted protein sequence Tomato scaffold711_contigs=2~374-2566 CAF-1_p150 PF11600.3 g78521.t1 - 0.0021 17.4 26.4 0.0032 16.8 18.3 1.3 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:240165-241289 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~240165-241289 DUF2326 PF10088.4 g13477.t1 - 0.07 12.7 0 0.13 11.8 0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2326) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:34891-37802 Augustus predicted protein sequence Tomato scaffold576_contigs=15~34891-37802 Pheromone PF08015.6 g66257.t1 - 0.7 10.7 9.5 13 6.7 0.4 3.3 1 1 2 3 3 3 0 Fungal mating-type pheromone | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:29373-29837 Augustus predicted protein sequence Tomato scaffold2156_contigs=2~29373-29837 DUF972 PF06156.8 g45143.t1 - 0.02 15.1 0.3 0.025 14.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:139365-139691 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~139365-139691 Caprin-1_C PF12287.3 g51608.t1 - 0.07 12.5 0.3 0.097 12 0.2 1.2 1 0 0 1 1 1 0 Cytoplasmic activation/proliferation-associated protein-1 C term | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:29109-31672 Augustus predicted protein sequence Tomato scaffold1619_contigs=7~29109-31672 Seryl_tRNA_N PF02403.17 g39351.t1 - 0.009 16 16.5 0.038 13.9 8.5 2.7 2 1 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:27674-28441 Augustus predicted protein sequence Tomato scaffold1269_contigs=10~27674-28441 DBD_Tnp_Mut PF03108.10 g74264.t1 - 1.5E-009 37.2 0.2 3.4E-009 36.1 0.1 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:51846-58562 Augustus predicted protein sequence Tomato scaffold2526_contigs=3~51846-58562 CENP-B_dimeris PF09026.5 g9205.t1 - 0.000029 24.2 7.7 0.000066 23 5.3 1.7 1 0 0 1 1 1 1 Centromere protein B dimerisation domain | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:93603-94580 Augustus predicted protein sequence Tomato scaffold449_contigs=4~93603-94580 DUF3060 PF11259.3 g82466.t1 - 0.0069 15.9 0 0.026 14.1 0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3060) | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:132086-132415 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~132086-132415 YjbE PF11106.3 g33223.t1 - 1.2 9.1 7.5 5.8 6.9 0.7 2.8 2 1 1 3 3 3 0 Exopolysaccharide production protein YjbE | Ref_seq=scaffold1120_contigs=1, transcript_loc=scaffold1120_contigs=1:18-1282 Augustus predicted protein sequence Tomato scaffold1120_contigs=1~18-1282 BATS PF06968.8 g17744.t1 - 0.057 13.2 0.1 0.077 12.8 0 1.4 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:85388-85672 Augustus predicted protein sequence Tomato scaffold714_contigs=9~85388-85672 HCV_core PF01542.13 g54964.t1 - 0.072 13.4 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 Hepatitis C virus core protein | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:309518-309907 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~309518-309907 F-box-like PF12937.2 g36110.t1 - 0.016 14.9 0.1 0.03 14 0.1 1.4 1 0 0 1 1 1 0 F-box-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:381488-382728 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~381488-382728 Sulfolobus_pRN PF05584.6 g65652.t1 - 0.14 12.1 0.3 0.24 11.4 0.2 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:42426-44199 Augustus predicted protein sequence Tomato scaffold2136_contigs=4~42426-44199 KN_motif PF12075.3 g67298.t1 - 2.1 8.2 13.9 18 5.2 0.5 4.4 4 0 0 4 4 4 0 KN motif | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:94957-95934 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~94957-95934 PRCC PF10253.4 g44915.t1 - 0.0067 17.1 0.6 0.011 16.4 0.4 1.4 1 1 0 1 1 1 1 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:136014-139651 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~136014-139651 CFIA_Pcf11 PF11526.3 g34825.t1 - 0.062 13.4 1.5 0.18 11.9 1.1 1.9 1 1 0 1 1 1 0 Subunit of cleavage factor IA Pcf11 | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:366693-367058 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~366693-367058 Dyp_perox PF04261.7 g50802.t1 - 0.1 11.2 0 0.11 11.2 0 1.1 1 0 0 1 1 1 0 Dyp-type peroxidase family | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:116909-117163 Augustus predicted protein sequence Tomato scaffold1570_contigs=4~116909-117163 DUF641 PF04859.7 g75224.t1 - 0.0017 18 3.9 0.0032 17.2 2.7 1.5 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:922559-922921 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~922559-922921 zf-BED PF02892.10 g44293.t1 - 0.023 14.4 0.4 0.034 13.9 0.3 1.3 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:182112-182390 Augustus predicted protein sequence Tomato scaffold1420_contigs=9~182112-182390 WI12 PF07107.6 g13555.t1 - 0.017 15 0 6.2 6.7 0 2.1 1 1 1 2 2 2 0 Wound-induced protein WI12 | Ref_seq=scaffold577_contigs=2, transcript_loc=scaffold577_contigs=2:37117-37389 Augustus predicted protein sequence Tomato scaffold577_contigs=2~37117-37389 Ribosomal_L15e PF00827.12 g57011.t1 - 0.0062 16 0.9 0.014 14.8 0.6 1.6 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:101238-102928 Augustus predicted protein sequence Tomato scaffold1824_contigs=4~101238-102928 Fanconi_A PF03511.9 g77746.t1 - 0.15 11.8 1 0.3 10.8 0.1 1.9 2 0 0 2 2 2 0 Fanconi anaemia group A protein | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:207013-212767 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~207013-212767 DUF4219 PF13961.1 g42761.t1 - 0.059 12.7 0.1 0.1 12 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:197830-199564 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~197830-199564 Phage_int_SAM_1 PF02899.12 g37891.t1 - 0.08 13 0.1 0.14 12.3 0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:166848-167778 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~166848-167778 Acetate_kinase PF00871.12 g70252.t1 - 0.17 10.3 0 0.25 9.8 0 1.1 1 0 0 1 1 1 0 Acetokinase family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:148879-152094 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~148879-152094 DUF4219 PF13961.1 g17396.t1 - 0.0028 17 1.8 0.0031 16.9 0.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:160367-161710 Augustus predicted protein sequence Tomato scaffold704_contigs=10~160367-161710 PBP_sp32 PF07222.7 g13018.t1 - 1.3 8.1 5.2 2.3 7.3 3.6 1.4 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:117050-118167 Augustus predicted protein sequence Tomato scaffold562_contigs=3~117050-118167 YL1 PF05764.8 g43531.t1 - 0.75 9.3 3.3 1.1 8.7 2.3 1.1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:208249-210683 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~208249-210683 P2X_receptor PF00864.14 g43730.t1 - 0.11 11.2 0.1 0.17 10.5 0 1.2 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:173275-176263 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~173275-176263 ATHILA PF03078.10 g77088.t1 - 0.0000035 25.8 0.1 0.0000041 25.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:105386-109492 Augustus predicted protein sequence Tomato scaffold2647_contigs=26~105386-109492 DUF417 PF04224.7 g1021.t1 - 0.079 12.3 0.1 0.1 11.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF417 | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:247623-247937 Augustus predicted protein sequence Tomato scaffold184_contigs=2~247623-247937 Mg-por_mtran_C PF07109.6 g19164.t1 - 0.016 15.2 0 0.019 15 0 1.3 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:143092-143349 Augustus predicted protein sequence Tomato scaffold746_contigs=6~143092-143349 DUF755 PF05501.6 g6369.t1 - 0.35 10.9 6.2 0.73 9.8 3.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF755) | Ref_seq=scaffold365_contigs=1, transcript_loc=scaffold365_contigs=1:11785-15430 Augustus predicted protein sequence Tomato scaffold365_contigs=1~11785-15430 Retrotrans_gag PF03732.12 g24370.t1 - 0.0017 18.3 0.2 0.0034 17.4 0.1 1.6 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:338998-340677 Augustus predicted protein sequence Tomato scaffold880_contigs=9~338998-340677 DUF2264 PF10022.4 g77576.t1 - 0.12 10.9 0.3 0.17 10.5 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:70441-73689 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~70441-73689 PAT1 PF09770.4 g51484.t1 - 7.5 4.6 19.8 8.1 4.5 13.7 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:7865-8378 Augustus predicted protein sequence Tomato scaffold1615_contigs=2~7865-8378 Pox_A6 PF04924.7 g82615.t1 - 0.059 12.1 0.1 0.069 11.9 0 1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:229608-229865 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~229608-229865 DUF1843 PF08898.5 g68671.t1 - 0.0049 16.8 1 35 4.5 1.8 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:34883-36289 Augustus predicted protein sequence Tomato scaffold2224_contigs=19~34883-36289 ESPR PF13018.1 g79910.t1 - 3.1 7.5 4.9 62 3.3 0.1 3.2 3 0 0 3 3 3 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:13655-16195 Augustus predicted protein sequence Tomato scaffold2704_contigs=20~13655-16195 TFIIA PF03153.8 g45385.t1 - 3.8 7.2 8.9 4.6 7 6.2 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:50702-52457 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~50702-52457 DUF4283 PF14111.1 g76446.t1 - 0.0000064 25.3 0 0.000018 23.8 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:87932-90545 Augustus predicted protein sequence Tomato scaffold2628_contigs=7~87932-90545 UBN2_2 PF14227.1 g68824.t1 - 0.0078 15.7 0 0.0087 15.6 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:59122-59346 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~59122-59346 Gemini_mov PF01708.11 g36640.t1 - 0.12 11.9 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Geminivirus putative movement protein | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:179314-180654 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~179314-180654 NIR_SIR PF01077.17 g67530.t1 - 0.54 9.6 2.3 9.2 5.6 1.6 2.2 2 0 0 2 2 2 0 Nitrite and sulphite reductase 4Fe-4S domain | Ref_seq=scaffold2186_contigs=16, transcript_loc=scaffold2186_contigs=16:2626-2991 Augustus predicted protein sequence Tomato scaffold2186_contigs=16~2626-2991 SHNi-TPR PF10516.4 g53104.t1 - 0.26 10.5 2.5 1 8.6 0.1 2.2 2 0 0 2 2 2 0 SHNi-TPR | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:193207-194548 Augustus predicted protein sequence Tomato scaffold1674_contigs=9~193207-194548 MIP-T3 PF10243.4 g7118.t1 - 0.93 7.8 5.8 1.1 7.6 4 1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:175252-175770 Augustus predicted protein sequence Tomato scaffold387_contigs=7~175252-175770 ATHILA PF03078.10 g53856.t1 - 0.00088 17.9 0 0.00095 17.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:347394-347600 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~347394-347600 RNase_T PF00929.19 g13577.t1 - 0.041 14.1 0 0.054 13.7 0 1.1 1 0 0 1 1 1 0 Exonuclease | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:37837-38229 Augustus predicted protein sequence Tomato scaffold578_contigs=5~37837-38229 FH2 PF02181.18 g4577.t1 - 0.025 13.4 0.1 0.036 12.9 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:204112-206464 Augustus predicted protein sequence Tomato scaffold303_contigs=3~204112-206464 ANAPC15 PF15243.1 g42976.t1 - 0.05 13.6 5.6 0.063 13.3 3.9 1.1 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 15 | Ref_seq=scaffold1379_contigs=3, transcript_loc=scaffold1379_contigs=3:18504-19169 Augustus predicted protein sequence Tomato scaffold1379_contigs=3~18504-19169 Pox_G7 PF05503.7 g83858.t1 - 0.0063 15.1 0.2 0.0068 15 0.1 1 1 0 0 1 1 1 1 Poxvirus G7-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2110486-2110806 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~2110486-2110806 DUF1003 PF06210.6 g62582.t1 - 0.25 11.3 2 0.29 11 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:299773-300000 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~299773-300000 FCP1_C PF09309.5 g52399.t1 - 0.018 14.3 2.4 0.027 13.7 1.7 1.2 1 0 0 1 1 1 0 FCP1, C-terminal | Ref_seq=scaffold1638_contigs=15, transcript_loc=scaffold1638_contigs=15:390819-391892 Augustus predicted protein sequence Tomato scaffold1638_contigs=15~390819-391892 Vac_Fusion PF02346.11 g76705.t1 - 0.12 11.8 0.6 1.6 8.2 0 2.3 2 0 0 2 2 2 0 Chordopoxvirus fusion protein | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:399930-400361 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~399930-400361 DUF2457 PF10446.4 g64341.t1 - 0.47 9.1 3.7 0.5 9 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:45022-45425 Augustus predicted protein sequence Tomato scaffold2060_contigs=14~45022-45425 VGCC_beta4Aa_N PF12052.3 g79546.t1 - 0.022 14.6 0.3 0.031 14.1 0.2 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:49675-50094 Augustus predicted protein sequence Tomato scaffold2698_contigs=8~49675-50094 PsbP PF01789.11 g10799.t1 - 0.11 11.8 0 0.16 11.4 0 1.1 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:105370-105865 Augustus predicted protein sequence Tomato scaffold507_contigs=4~105370-105865 YopD PF05844.7 g86225.t1 - 0.058 12.4 0.1 0.082 11.9 0.1 1.2 1 0 0 1 1 1 0 YopD protein | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:5349-7836 Augustus predicted protein sequence Tomato scaffold2845_contigs=1~5349-7836 Xpo1 PF08389.7 g23096.t1 - 0.11 12.4 0.4 0.18 11.7 0.1 1.4 1 1 1 2 2 2 0 Exportin 1-like protein | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:119274-119636 Augustus predicted protein sequence Tomato scaffold848_contigs=10~119274-119636 Neisseria_TspB PF05616.8 g83877.t1 - 0.068 11.5 1.8 0.078 11.3 1.3 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2167436-2168635 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~2167436-2168635 Tiny_TM_bacill PF09680.5 g15623.t1 - 0.19 11.1 9.4 2.6 7.5 0.8 3 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:215562-217488 Augustus predicted protein sequence Tomato scaffold635_contigs=5~215562-217488 H-kinase_dim PF02895.9 g42629.t1 - 0.032 14.5 0.1 0.045 14 0.1 1.2 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold1366_contigs=6, transcript_loc=scaffold1366_contigs=6:141108-141491 Augustus predicted protein sequence Tomato scaffold1366_contigs=6~141108-141491 DBD_Tnp_Mut PF03108.10 g19696.t1 - 2.7E-009 36.4 0 4.6E-009 35.7 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:125619-127793 Augustus predicted protein sequence Tomato scaffold757_contigs=4~125619-127793 DEADboxA PF12343.3 g28759.t1 - 1.6 9 10.2 0.17 12.1 3.7 1.8 2 0 0 2 2 2 0 Cold shock protein DEAD box A | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:211652-212321 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~211652-212321 Trefoil PF00088.13 g48353.t1 - 0.043 13.4 0.1 0.086 12.4 0.1 1.5 1 0 0 1 1 1 0 Trefoil (P-type) domain | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:86365-88905 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~86365-88905 GRP PF07172.6 g12240.t1 - 0.0082 16.5 0 0.012 16 0 1.3 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:102845-103060 Augustus predicted protein sequence Tomato scaffold541_contigs=3~102845-103060 DUF2458 PF10454.4 g2977.t1 - 0.13 12.1 0.5 0.28 11 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2458) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:251532-253606 Augustus predicted protein sequence Tomato scaffold257_contigs=2~251532-253606 Retrotrans_gag PF03732.12 g73951.t1 - 0.000072 22.7 0.1 0.000072 22.7 0.1 1.9 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:323087-323581 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~323087-323581 VEGF_C PF14554.1 g44066.t1 - 0.02 14.6 0.6 0.038 13.8 0.4 1.4 1 0 0 1 1 1 0 VEGF heparin-binding domain | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:233685-237479 Augustus predicted protein sequence Tomato scaffold1403_contigs=11~233685-237479 Fn3_assoc PF13287.1 g30519.t1 - 0.066 13.3 0 0.13 12.3 0 1.4 1 0 0 1 1 1 0 Fn3 associated | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:125499-127475 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~125499-127475 DUF3720 PF12517.3 g84148.t1 - 2.5 8.8 12.3 21 5.8 7.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3720) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:190518-191883 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~190518-191883 Prefoldin PF02996.12 g62134.t1 - 0.017 14.7 1 0.029 14 0.7 1.4 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:21644-22870 Augustus predicted protein sequence Tomato scaffold1984_contigs=7~21644-22870 MRI PF15325.1 g78194.t1 - 0.23 12.4 0.2 0.23 12.4 0.2 2.4 2 1 0 2 2 2 0 Modulator of retrovirus infection | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:466129-467066 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~466129-467066 zf-CCHC PF00098.18 g85768.t1 - 0.0000029 26.9 0.9 0.0000029 26.9 0.6 1.9 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:8750-9600 Augustus predicted protein sequence Tomato scaffold2818_contigs=1~8750-9600 Trypan_PARP PF05887.6 g72320.t1 - 2.8 7.7 9.7 0.49 10.1 3.8 1.8 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1069684-1070197 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1069684-1070197 RebB PF11747.3 g45007.t1 - 0.036 13.9 1.5 0.098 12.5 0.1 2 2 0 0 2 2 2 0 Killing trait | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:510783-511934 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~510783-511934 CTV_P6 PF06706.6 g47167.t1 - 0.025 14 0 0.04 13.4 0 1.2 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:80295-80555 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~80295-80555 gag_pre-integrs PF13976.1 g79410.t1 - 0.000000002 36.9 0.1 2.3E-009 36.7 0.1 1.2 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:90467-91240 Augustus predicted protein sequence Tomato scaffold2694_contigs=28~90467-91240 Ku_C PF03730.9 g78173.t1 - 3.8 8.1 5.7 7.3 7.2 3.9 1.4 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:377186-377813 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~377186-377813 zf-CCHC PF00098.18 g68999.t1 - 0.025 14.5 2 0.025 14.5 1.4 1.9 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:37323-39666 Augustus predicted protein sequence Tomato scaffold2245_contigs=4~37323-39666 Nbl1_Borealin_N PF10444.4 g38733.t1 - 0.16 11.3 0.1 0.23 10.8 0 1.3 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:175946-176197 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~175946-176197 T2SI PF02501.12 g83556.t1 - 0.38 10.7 0.1 0.38 10.7 0 2.3 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein I | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:937197-939471 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~937197-939471 SR-25 PF10500.4 g73607.t1 - 0.0034 16.8 19.3 0.0034 16.8 13.4 1.1 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:276948-277625 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~276948-277625 HALZ PF02183.13 g50605.t1 - 0.073 12.7 0.6 0.23 11.2 0.4 1.9 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:172667-173712 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~172667-173712 Toxin_4 PF00706.12 g40083.t1 - 0.042 14 0.4 0.11 12.7 0.1 1.7 2 0 0 2 2 2 0 Anenome neurotoxin | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:61671-61985 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~61671-61985 ParB PF08775.5 g72116.t1 - 0.013 15.8 0.4 0.015 15.6 0.3 1.1 1 0 0 1 1 1 0 ParB family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:149459-149707 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~149459-149707 NST1 PF13945.1 g66276.t1 - 0.34 10.9 4 0.37 10.8 2.8 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:7743-7997 Augustus predicted protein sequence Tomato scaffold2159_contigs=6~7743-7997 Chon_Sulph_att PF06566.6 g61432.t1 - 0.089 12.4 9.8 0.11 12.1 6.8 1 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:180720-181040 Augustus predicted protein sequence Tomato scaffold1970_contigs=14~180720-181040 RNase_H2-Ydr279 PF09468.5 g9322.t1 - 0.18 10.9 6 0.19 10.8 4.1 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:13746-14267 Augustus predicted protein sequence Tomato scaffold453_contigs=2~13746-14267 Sina PF03145.11 g14687.t1 - 0.068 12.8 0.1 0.093 12.3 0.1 1.1 1 0 0 1 1 1 0 Seven in absentia protein family | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:171800-172154 Augustus predicted protein sequence Tomato scaffold599_contigs=8~171800-172154 Nop14 PF04147.7 g74642.t1 - 0.015 13.2 14.8 0.018 13 10.3 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:254289-258973 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~254289-258973 DUF2457 PF10446.4 g57080.t1 - 2.5 6.7 6.9 3.9 6.1 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:207701-208444 Augustus predicted protein sequence Tomato scaffold1827_contigs=21~207701-208444 YdjO PF14169.1 g68395.t1 - 0.0029 17 0.1 0.006 16 0 1.5 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:47571-49328 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~47571-49328 Peptidase_S46 PF10459.4 g14300.t1 - 0.043 12.2 0.1 0.043 12.2 0 1.6 2 0 0 2 2 2 0 Peptidase S46 | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:258560-259805 Augustus predicted protein sequence Tomato scaffold587_contigs=13~258560-259805 HC2 PF07382.6 g2859.t1 - 0.02 14.7 9.7 0.027 14.3 6.7 1.1 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:31840-32584 Augustus predicted protein sequence Tomato scaffold256_contigs=5~31840-32584 Pcc1 PF09341.5 g63824.t1 - 0.048 13.7 0.1 0.69 9.9 0 2.2 1 1 1 2 2 2 0 Transcription factor Pcc1 | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:299774-300073 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~299774-300073 YhjQ PF06564.7 g77221.t1 - 0.071 12.4 0.1 0.086 12.1 0.1 1.1 1 0 0 1 1 1 0 YhjQ protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:26641-27024 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~26641-27024 DBD_Tnp_Mut PF03108.10 g5544.t1 - 0.00024 20.5 0.7 0.00041 19.8 0.5 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:65925-66500 Augustus predicted protein sequence Tomato scaffold331_contigs=3~65925-66500 FH2 PF02181.18 g69899.t1 - 0.033 13 0 0.036 12.9 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:58860-59162 Augustus predicted protein sequence Tomato scaffold2312_contigs=19~58860-59162 DUF1032 PF06278.6 g55223.t1 - 0.09 11.2 0 0.09 11.2 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:436150-436778 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~436150-436778 Cleaved_Adhesin PF07675.6 g4146.t1 - 0.036 13.6 0 0.045 13.3 0 1.2 1 0 0 1 1 1 0 Cleaved Adhesin Domain | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:132378-132749 Augustus predicted protein sequence Tomato scaffold293_contigs=5~132378-132749 zf-CCHC PF00098.18 g57435.t1 - 2.3 8.2 6.7 0.31 11 1.4 2.1 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:70787-71374 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~70787-71374 ATHILA PF03078.10 g1302.t1 - 0.0066 15 0 0.088 11.3 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:23856-24774 Augustus predicted protein sequence Tomato scaffold197_contigs=2~23856-24774 Ku_C PF03730.9 g40304.t1 - 1.6 9.3 10 0.087 13.3 2.7 2 2 0 0 2 2 2 0 Ku70/Ku80 C-terminal arm | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:101693-102627 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~101693-102627 CENP-B_dimeris PF09026.5 g58944.t1 - 0.02 15.1 7.6 0.038 14.2 5.3 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1884_contigs=4, transcript_loc=scaffold1884_contigs=4:24353-25000 Augustus predicted protein sequence Tomato scaffold1884_contigs=4~24353-25000 ATHILA PF03078.10 g35402.t1 - 0.000097 21.1 0 0.02 13.5 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:308020-309586 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~308020-309586 EzrA PF06160.7 g4684.t1 - 0.018 13.2 0.6 0.023 12.8 0.4 1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:156148-156459 Augustus predicted protein sequence Tomato scaffold306_contigs=7~156148-156459 DUF4208 PF13907.1 g5948.t1 - 0.025 14.7 0.2 0.036 14.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:215074-215864 Augustus predicted protein sequence Tomato scaffold344_contigs=14~215074-215864 CTDII PF01556.13 g3450.t1 - 0.0039 17 0.1 0.0046 16.8 0.1 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:38440-38679 Augustus predicted protein sequence Tomato scaffold272_contigs=1~38440-38679 Peptidase_M61 PF05299.7 g25662.t1 - 0.038 13.9 0 0.53 10.2 0 1.9 1 1 1 2 2 2 0 M61 glycyl aminopeptidase | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:141360-142833 Augustus predicted protein sequence Tomato scaffold930_contigs=4~141360-142833 DUF3484 PF11983.3 g8770.t1 - 0.15 12.9 1.3 0.22 12.3 0.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3484) | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:66934-67197 Augustus predicted protein sequence Tomato scaffold436_contigs=4~66934-67197 Herpes_UL73 PF03554.8 g1876.t1 - 0.013 15.2 0 3.3 7.5 0 2.2 2 0 0 2 2 2 0 UL73 viral envelope glycoprotein | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:162685-163695 Augustus predicted protein sequence Tomato scaffold218_contigs=4~162685-163695 DUF3914 PF13053.1 g55362.t1 - 0.0038 17.3 0.7 1 9.5 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3914) | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:80767-81704 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~80767-81704 DUF2457 PF10446.4 g33540.t1 - 0.00077 18.3 13.2 0.00077 18.3 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:83328-85401 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~83328-85401 zf-CCHC_4 PF14392.1 g39755.t1 - 0.038 13.6 1.4 0.082 12.5 1 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:154771-156696 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~154771-156696 DUF2930 PF11152.3 g77350.t1 - 0.17 10.9 0 0.23 10.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:86299-89861 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~86299-89861 LBR_tudor PF09465.5 g29911.t1 - 0.056 13 2 2 8.1 0.3 2.1 2 0 0 2 2 2 0 Lamin-B receptor of TUDOR domain | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:256862-257201 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~256862-257201 TOM_sub5 PF15178.1 g41464.t1 - 0.058 13 0.4 0.16 11.7 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial import receptor subunit TOM5 homolog | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:104770-105074 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~104770-105074 YdjO PF14169.1 g40752.t1 - 0.019 14.3 0.2 0.035 13.5 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:107098-107739 Augustus predicted protein sequence Tomato scaffold1309_contigs=4~107098-107739 APC_crr PF05923.7 g30295.t1 - 0.68 9.6 7.9 0.14 11.8 1.1 2.5 2 0 0 2 2 2 0 APC cysteine-rich region | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:146590-149520 Augustus predicted protein sequence Tomato scaffold1041_contigs=2~146590-149520 YdjO PF14169.1 g41352.t1 - 0.042 13.2 0.1 0.066 12.6 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:78995-82181 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~78995-82181 Erythro_esteras PF05139.9 g3562.t1 - 0.14 11.2 0 0.25 10.4 0 1.3 2 0 0 2 2 2 0 Erythromycin esterase | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:36188-36742 Augustus predicted protein sequence Tomato scaffold278_contigs=5~36188-36742 Polysacc_deac_1 PF01522.16 g8201.t1 - 0.085 12.4 0.5 0.18 11.3 0.1 1.7 1 1 1 2 2 2 0 Polysaccharide deacetylase | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:362706-363149 Augustus predicted protein sequence Tomato scaffold421_contigs=12~362706-363149 A1_Propeptide PF07966.7 g68128.t1 - 0.55 10.1 4 3.4 7.5 2 2.4 1 1 1 2 2 2 0 A1 Propeptide | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:7796-8513 Augustus predicted protein sequence Tomato scaffold2207_contigs=13~7796-8513 DUF2887 PF11103.3 g43540.t1 - 0.068 12.7 0 0.12 11.9 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:236988-241180 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~236988-241180 Fer4_6 PF12837.2 g24095.t1 - 0.03 14.2 0.5 0.061 13.2 0.3 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:110498-110968 Augustus predicted protein sequence Tomato scaffold876_contigs=13~110498-110968 Elong_Iki1 PF10483.4 g30266.t1 - 0.049 13 0.2 0.059 12.7 0.1 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:16511-21984 Augustus predicted protein sequence Tomato scaffold1041_contigs=2~16511-21984 Unstab_antitox PF09720.5 g84969.t1 - 0.007 16 0.7 0.23 11.1 0 2.5 2 0 0 2 2 2 2 Putative addiction module component | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:36285-37802 Augustus predicted protein sequence Tomato scaffold2786_contigs=1~36285-37802 TMF_DNA_bd PF12329.3 g22055.t1 - 0.2 11.4 2 0.34 10.7 1.4 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:786074-787576 Augustus predicted protein sequence Tomato scaffold817_contigs=11~786074-787576 NST1 PF13945.1 g54881.t1 - 0.054 13.5 0.1 0.062 13.3 0 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:68009-68341 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~68009-68341 DUF605 PF04652.11 g4766.t1 - 1.9 7.7 17.9 2.9 7.2 12.4 1.2 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:114657-115490 Augustus predicted protein sequence Tomato scaffold307_contigs=2~114657-115490 DUF4219 PF13961.1 g18457.t1 - 0.00063 19.1 0.2 0.001 18.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:119210-119536 Augustus predicted protein sequence Tomato scaffold724_contigs=4~119210-119536 Med19 PF10278.4 g78554.t1 - 0.0013 18.4 24.6 0.0027 17.3 17.1 1.6 1 0 0 1 1 1 1 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:373755-374760 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~373755-374760 DUF1216 PF06746.6 g22436.t1 - 0.1 12.3 0.3 0.15 11.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1216) | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:35986-36291 Augustus predicted protein sequence Tomato scaffold830_contigs=3~35986-36291 DUF4219 PF13961.1 g63323.t1 - 0.00065 19 0.2 0.0015 17.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:261638-262859 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~261638-262859 DUF4471 PF14740.1 g63060.t1 - 0.042 13 3.9 0.043 13 2.7 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:35532-35920 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~35532-35920 Homeobox PF00046.24 g44007.t1 - 0.15 11.7 0 0.24 11 0 1.4 1 0 0 1 1 1 0 Homeobox domain | Ref_seq=scaffold1401_contigs=5, transcript_loc=scaffold1401_contigs=5:25402-25734 Augustus predicted protein sequence Tomato scaffold1401_contigs=5~25402-25734 DUF4219 PF13961.1 g9201.t1 - 0.00064 19 0.2 0.001 18.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:45464-45691 Augustus predicted protein sequence Tomato scaffold449_contigs=4~45464-45691 Fzo_mitofusin PF04799.8 g16858.t1 - 0.087 12.1 2.7 0.14 11.5 1.9 1.4 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:105197-105898 Augustus predicted protein sequence Tomato scaffold685_contigs=4~105197-105898 zf-CCHC PF00098.18 g42280.t1 - 0.000053 22.9 1.2 0.000053 22.9 0.8 2.7 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:53381-53620 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~53381-53620 zf-BED PF02892.10 g45771.t1 - 0.0059 16.3 0.1 0.016 14.9 0.1 1.7 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1461_contigs=5, transcript_loc=scaffold1461_contigs=5:43728-44402 Augustus predicted protein sequence Tomato scaffold1461_contigs=5~43728-44402 DUF1985 PF09331.6 g40310.t1 - 0.000055 22.9 0 0.000075 22.5 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:133452-137772 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~133452-137772 UBN2 PF14223.1 g44.t1 - 0.031 14 0 0.04 13.6 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:16869-18381 Augustus predicted protein sequence Tomato scaffold3_contigs=2~16869-18381 GAS PF13851.1 g86687.t1 - 0.028 13.6 3.5 0.18 11 2.5 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2883_contigs=1, transcript_loc=scaffold2883_contigs=1:1299-1676 Augustus predicted protein sequence Tomato scaffold2883_contigs=1~1299-1676 IlvGEDA_leader PF08046.6 g61092.t1 - 0.035 13.2 0.5 0.069 12.3 0.4 1.5 1 0 0 1 1 1 0 IlvGEDA operon leader peptide | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:511574-512238 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~511574-512238 DUF1495 PF07381.6 g24555.t1 - 0.048 13.3 0 0.065 12.9 0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:51197-51648 Augustus predicted protein sequence Tomato scaffold888_contigs=4~51197-51648 TMEM171 PF15471.1 g69816.t1 - 8.3 5.1 7.5 13 4.4 5.2 1.2 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:54857-55393 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~54857-55393 IPK PF03770.11 g5620.t1 - 0.11 12 0 0.14 11.8 0 1.1 1 0 0 1 1 1 0 Inositol polyphosphate kinase | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:164292-167285 Augustus predicted protein sequence Tomato scaffold334_contigs=13~164292-167285 Pollen_Ole_e_I PF01190.12 g62102.t1 - 0.1 12.4 0 0.13 12.1 0 1.1 1 0 0 1 1 1 0 Pollen proteins Ole e I like | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:202981-203313 Augustus predicted protein sequence Tomato scaffold1982_contigs=6~202981-203313 LPAM_1 PF08139.7 g54052.t1 - 0.039 14.1 2.2 0.084 13.1 1.5 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site | Ref_seq=scaffold1712_contigs=1, transcript_loc=scaffold1712_contigs=1:1417-1797 Augustus predicted protein sequence Tomato scaffold1712_contigs=1~1417-1797 GRP PF07172.6 g45984.t1 - 0.0000058 26.6 56.6 0.0000058 26.6 39.3 2.4 1 1 1 2 2 2 1 Glycine rich protein family | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:401-3324 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~401-3324 HALZ PF02183.13 g14679.t1 - 0.1 12.3 0.9 0.24 11.1 0.6 1.8 1 1 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:162414-162695 Augustus predicted protein sequence Tomato scaffold599_contigs=8~162414-162695 YtpI PF14007.1 g21135.t1 - 0.0027 17.5 2.7 0.004 17 1.9 1.2 1 0 0 1 1 1 1 YtpI-like protein | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:275394-275948 Augustus predicted protein sequence Tomato scaffold793_contigs=9~275394-275948 Inhibitor_I78 PF11720.3 g2993.t1 - 0.089 12.5 0 0.18 11.5 0 1.5 1 0 0 1 1 1 0 Peptidase inhibitor I78 family | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:291324-293445 Augustus predicted protein sequence Tomato scaffold257_contigs=2~291324-293445 CgtA PF06306.6 g30584.t1 - 0.053 12.7 0 0.068 12.3 0 1.1 1 0 0 1 1 1 0 Beta-1,4-N-acetylgalactosaminyltransferase (CgtA) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:232674-233358 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~232674-233358 UPF0561 PF10573.4 g11985.t1 - 1.8 8.4 4.4 0.69 9.7 0.5 2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:13425-14316 Augustus predicted protein sequence Tomato scaffold535_contigs=8~13425-14316 MHCassoc_trimer PF08831.5 g59046.t1 - 0.19 11.6 1.1 0.35 10.7 0.8 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:74242-74906 Augustus predicted protein sequence Tomato scaffold1892_contigs=29~74242-74906 HSCB_C PF07743.8 g57914.t1 - 0.036 14.5 1.6 0.064 13.7 0.3 1.9 1 1 0 2 2 2 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:379710-383368 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~379710-383368 Flavodoxin_3 PF12641.2 g4215.t1 - 0.0039 16.6 0.3 0.0055 16.1 0.2 1.1 1 0 0 1 1 1 1 Flavodoxin domain | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:373298-375075 Augustus predicted protein sequence Tomato scaffold293_contigs=5~373298-375075 Asp-B-Hydro_N PF05279.6 g43945.t1 - 0.36 10.6 2.7 0.45 10.3 1.9 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:58144-58563 Augustus predicted protein sequence Tomato scaffold1397_contigs=9~58144-58563 Etmic-2 PF06670.6 g15787.t1 - 0.14 10.8 0 0.2 10.3 0 1.2 1 0 0 1 1 1 0 Microneme protein Etmic-2 | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:25632-27820 Augustus predicted protein sequence Tomato scaffold644_contigs=2~25632-27820 NST1 PF13945.1 g1246.t1 - 0.17 11.9 3.2 0.2 11.7 2.2 1.2 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:11977-12470 Augustus predicted protein sequence Tomato scaffold195_contigs=3~11977-12470 Nucleoplasmin PF03066.10 g45464.t1 - 0.0055 16.2 5.7 0.011 15.2 4 1.5 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:325052-327134 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~325052-327134 DAD PF02109.11 g10422.t1 - 0.077 13 0.9 0.14 12.2 0.5 1.7 2 0 0 2 2 2 0 DAD family | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:131701-133773 Augustus predicted protein sequence Tomato scaffold498_contigs=12~131701-133773 Omp28 PF11551.3 g39876.t1 - 0.044 13.3 0.1 0.055 12.9 0 1 1 0 0 1 1 1 0 Outer membrane protein Omp28 | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:189303-189677 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~189303-189677 Retrotrans_gag PF03732.12 g45142.t1 - 0.00094 19.2 0.1 0.0029 17.6 0 1.9 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:136646-137747 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~136646-137747 Endonuclease_5 PF04493.9 g26977.t1 - 0.24 10.7 0.9 0.7 9.2 0.5 1.7 2 0 0 2 2 2 0 Endonuclease V | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:69877-70416 Augustus predicted protein sequence Tomato scaffold965_contigs=10~69877-70416 DUF4172 PF13776.1 g58377.t1 - 0.062 13.4 0.4 0.15 12.1 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:254635-255076 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~254635-255076 TAP42 PF04177.7 g82036.t1 - 0.054 12.4 0.1 0.066 12.1 0.1 1.1 1 0 0 1 1 1 0 TAP42-like family | Ref_seq=scaffold2734_contigs=11, transcript_loc=scaffold2734_contigs=11:481125-482499 Augustus predicted protein sequence Tomato scaffold2734_contigs=11~481125-482499 DUF1803 PF08820.5 g54223.t1 - 0.053 13.2 0.1 0.11 12.2 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:66831-71940 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~66831-71940 Phage_integrase PF00589.17 g87471.t1 - 0.12 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:5410-5754 Augustus predicted protein sequence Tomato scaffold3123_contigs=1~5410-5754 DUF4139 PF13598.1 g48439.t1 - 0.033 13.5 1.4 0.051 12.8 1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:127918-130301 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~127918-130301 Leucyl-specific PF14795.1 g12535.t1 - 0.1 12.5 0.9 0.17 11.7 0.5 1.5 1 1 0 1 1 1 0 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:180663-183466 Augustus predicted protein sequence Tomato scaffold556_contigs=11~180663-183466 Pyr_redox PF00070.22 g59084.t1 - 0.073 13.4 0.1 0.24 11.8 0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:109593-110171 Augustus predicted protein sequence Tomato scaffold1896_contigs=29~109593-110171 bZIP_2 PF07716.10 g5360.t1 - 0.19 11.5 2.8 0.39 10.5 1.9 1.5 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:139626-141826 Augustus predicted protein sequence Tomato scaffold325_contigs=5~139626-141826 Phage_cap_E PF03864.10 g59360.t1 - 0.0024 16.8 0.1 0.0026 16.7 0.1 1 1 0 0 1 1 1 1 Phage major capsid protein E | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:192259-192582 Augustus predicted protein sequence Tomato scaffold1915_contigs=10~192259-192582 SMN PF06003.7 g25766.t1 - 0.023 13.8 0 0.029 13.4 0 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold932_contigs=1, transcript_loc=scaffold932_contigs=1:2785-6606 Augustus predicted protein sequence Tomato scaffold932_contigs=1~2785-6606 DUF4562 PF15123.1 g73511.t1 - 0.0042 16.9 0.1 2.2 8.1 0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4562) | Ref_seq=scaffold2475_contigs=3, transcript_loc=scaffold2475_contigs=3:1-5912 Augustus predicted protein sequence Tomato scaffold2475_contigs=3~1-5912 Cortex-I_coil PF09304.5 g4846.t1 - 0.04 13.9 10.1 0.027 14.5 5.1 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:38634-42800 Augustus predicted protein sequence Tomato scaffold309_contigs=4~38634-42800 TPX2 PF06886.6 g50245.t1 - 0.24 11.4 1.8 22 5.2 0.2 2.5 2 0 0 2 2 2 0 Targeting protein for Xklp2 (TPX2) | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:12942-13778 Augustus predicted protein sequence Tomato scaffold1562_contigs=2~12942-13778 End3 PF12761.2 g19246.t1 - 0.0087 15.7 0.4 0.021 14.4 0.1 1.7 2 0 0 2 2 2 1 Actin cytoskeleton-regulatory complex protein END3 | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:215295-220945 Augustus predicted protein sequence Tomato scaffold748_contigs=11~215295-220945 VGCC_beta4Aa_N PF12052.3 g75279.t1 - 0.013 15.3 2.8 0.026 14.3 1.5 1.9 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:63207-63881 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~63207-63881 DUF2502 PF10697.4 g50574.t1 - 0.53 10.4 8.4 0.77 9.9 5.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2502) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:61506-61811 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~61506-61811 Mg-por_mtran_C PF07109.6 g78909.t1 - 0.071 13.1 0 0.075 13 0 1.2 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold2679_contigs=24, transcript_loc=scaffold2679_contigs=24:566264-566530 Augustus predicted protein sequence Tomato scaffold2679_contigs=24~566264-566530 DUF2219 PF09982.4 g74105.t1 - 0.00017 20.5 0.1 0.58 8.9 0 2.9 3 0 0 3 3 3 2 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold2518_contigs=8, transcript_loc=scaffold2518_contigs=8:3226-5343 Augustus predicted protein sequence Tomato scaffold2518_contigs=8~3226-5343 Perilipin PF03036.11 g51365.t1 - 0.024 13.4 0.7 0.03 13.1 0.5 1.1 1 0 0 1 1 1 0 Perilipin family | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:31299-31984 Augustus predicted protein sequence Tomato scaffold1613_contigs=9~31299-31984 GHMP_kinases_N PF00288.21 g28054.t1 - 0.08 13 0.1 0.097 12.7 0.1 1.2 1 0 0 1 1 1 0 GHMP kinases N terminal domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:157683-158008 Augustus predicted protein sequence Tomato scaffold990_contigs=6~157683-158008 Unstab_antitox PF09720.5 g24601.t1 - 0.026 14.2 0.4 0.055 13.1 0 1.8 2 0 0 2 2 2 0 Putative addiction module component | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:85353-85855 Augustus predicted protein sequence Tomato scaffold890_contigs=10~85353-85855 DUF3082 PF11282.3 g46594.t1 - 0.72 9.9 6.7 0.55 10.3 3.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3082) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:568053-568403 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~568053-568403 HC2 PF07382.6 g17782.t1 - 0.034 13.9 2.4 0.037 13.8 1.7 1.1 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:232718-232942 Augustus predicted protein sequence Tomato scaffold714_contigs=9~232718-232942 Tom22 PF04281.8 g25169.t1 - 1.2 8.6 4.4 1.2 8.6 3.1 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 | Ref_seq=scaffold921_contigs=1, transcript_loc=scaffold921_contigs=1:19617-19853 Augustus predicted protein sequence Tomato scaffold921_contigs=1~19617-19853 NPCBM_assoc PF10633.4 g56329.t1 - 0.044 13.8 0.1 0.065 13.2 0 1.2 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:102905-103234 Augustus predicted protein sequence Tomato scaffold1801_contigs=9~102905-103234 YfiO PF13525.1 g11582.t1 - 0.014 14.9 0.1 0.022 14.2 0 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein | Ref_seq=scaffold527_contigs=2, transcript_loc=scaffold527_contigs=2:45869-50118 Augustus predicted protein sequence Tomato scaffold527_contigs=2~45869-50118 C1_1 PF00130.17 g2886.t1 - 0.066 12.9 0.5 0.066 12.9 0.3 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:103608-105750 Augustus predicted protein sequence Tomato scaffold256_contigs=5~103608-105750 GcrA PF07750.6 g47580.t1 - 0.12 12.5 0.2 0.19 11.9 0.1 1.4 1 1 0 1 1 1 0 GcrA cell cycle regulator | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:639614-639982 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~639614-639982 Transposase_28 PF04195.7 g80937.t1 - 0.002 17.4 0 0.0039 16.5 0 1.5 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:359893-363215 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~359893-363215 IF2_assoc PF08364.6 g42894.t1 - 0.64 10 2.8 11 6 0 3 3 1 1 4 4 4 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:79678-79926 Augustus predicted protein sequence Tomato scaffold1375_contigs=5~79678-79926 FH2 PF02181.18 g41959.t1 - 0.025 13.5 0.3 0.032 13.1 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:14992-15480 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~14992-15480 DUF4192 PF13830.1 g44109.t1 - 0.043 13.4 1.1 0.049 13.2 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:128862-129750 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~128862-129750 LAT PF15234.1 g62193.t1 - 2.1 7.7 6.4 1 8.8 3.2 1.5 1 1 0 1 1 1 0 Linker for activation of T-cells | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:57533-58346 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~57533-58346 K-box PF01486.12 g22131.t1 - 0.095 12.5 0.9 0.15 11.8 0.1 1.7 2 0 0 2 2 2 0 K-box region | Ref_seq=scaffold822_contigs=2, transcript_loc=scaffold822_contigs=2:42308-42907 Augustus predicted protein sequence Tomato scaffold822_contigs=2~42308-42907 Transposase_28 PF04195.7 g86959.t1 - 0.075 12.3 0.1 0.097 11.9 0 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:20168-21537 Augustus predicted protein sequence Tomato scaffold2915_contigs=1~20168-21537 CitX PF03802.9 g26464.t1 - 0.05 13 0.1 0.07 12.5 0.1 1.2 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:105230-105667 Augustus predicted protein sequence Tomato scaffold949_contigs=2~105230-105667 RBP_receptor PF14752.1 g62529.t1 - 0.04 12.2 0.3 0.05 11.9 0.2 1 1 0 0 1 1 1 0 Retinol binding protein receptor | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:18721-19489 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~18721-19489 MxiH PF09392.5 g13771.t1 - 1.1 9.8 3.3 0.62 10.6 1 1.5 2 0 0 2 2 2 0 Type III secretion needle MxiH like | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:139507-140117 Augustus predicted protein sequence Tomato scaffold582_contigs=8~139507-140117 DUF2129 PF09902.4 g75607.t1 - 0.11 12.3 0.1 12 5.7 0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2129) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:16871-21708 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~16871-21708 BMC PF00936.14 g52122.t1 - 0.045 13.4 0.3 0.068 12.8 0.1 1.3 1 1 0 1 1 1 0 BMC domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:117312-117560 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~117312-117560 Period_C PF12114.3 g70741.t1 - 0.009 15.6 0.1 0.0093 15.5 0.1 1 1 0 0 1 1 1 1 Period protein 2/3C-terminal region | Ref_seq=scaffold2349_contigs=3, transcript_loc=scaffold2349_contigs=3:16083-16448 Augustus predicted protein sequence Tomato scaffold2349_contigs=3~16083-16448 PBP1_TM PF14812.1 g42210.t1 - 3.4 8 8.8 38 4.6 6.1 2.1 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:103279-103674 Augustus predicted protein sequence Tomato scaffold1349_contigs=8~103279-103674 FH2 PF02181.18 g75486.t1 - 0.049 12.5 0.1 0.058 12.2 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:127580-127966 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~127580-127966 Pkinase_Tyr PF07714.12 g61797.t1 - 0.062 12.3 0 0.089 11.8 0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase | Ref_seq=scaffold1976_contigs=4, transcript_loc=scaffold1976_contigs=4:109305-110865 Augustus predicted protein sequence Tomato scaffold1976_contigs=4~109305-110865 FH2 PF02181.18 g1198.t1 - 0.065 12.1 0.1 0.082 11.7 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:136929-137423 Augustus predicted protein sequence Tomato scaffold193_contigs=2~136929-137423 P12 PF12669.2 g22670.t1 - 6.3 7 9.5 11 6.3 6.6 1.3 1 0 0 1 1 1 0 Virus attachment protein p12 family | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:316737-319645 Augustus predicted protein sequence Tomato scaffold832_contigs=9~316737-319645 Reo_sigmaC PF04582.7 g6808.t1 - 0.097 11.8 0.5 0.097 11.8 0.3 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:42512-42823 Augustus predicted protein sequence Tomato scaffold383_contigs=3~42512-42823 CAF1A PF12253.3 g44808.t1 - 0.0094 16 1 0.011 15.8 0.7 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 subunit A | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:86437-86667 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~86437-86667 DUF1678 PF07913.6 g2280.t1 - 0.1 12.1 0 0.1 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:6947-7204 Augustus predicted protein sequence Tomato scaffold234_contigs=2~6947-7204 T2SI PF02501.12 g45690.t1 - 0.019 14.9 0.2 0.026 14.5 0.1 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein I | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:380951-383116 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~380951-383116 Totivirus_coat PF05518.6 g3446.t1 - 1.6 6.5 4.5 1.9 6.2 3.1 1.1 1 0 0 1 1 1 0 Totivirus coat protein | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:29941-33479 Augustus predicted protein sequence Tomato scaffold272_contigs=1~29941-33479 EBV-NA3 PF05009.7 g87685.t1 - 0.17 11 2.3 0.18 11 1.6 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold3639_contigs=1, transcript_loc=scaffold3639_contigs=1:67-300 Augustus predicted protein sequence Tomato scaffold3639_contigs=1~67-300 ATHILA PF03078.10 g80335.t1 - 0.0037 15.9 0 0.54 8.7 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:107388-108280 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~107388-108280 DUF3196 PF11428.3 g13579.t1 - 0.077 12.2 0 0.091 12 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3196) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:42088-42507 Augustus predicted protein sequence Tomato scaffold578_contigs=5~42088-42507 IFP_35_N PF07334.8 g84811.t1 - 0.018 15 5.7 0.1 12.5 1.2 2.6 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2781_contigs=1, transcript_loc=scaffold2781_contigs=1:28354-28965 Augustus predicted protein sequence Tomato scaffold2781_contigs=1~28354-28965 Prim-Pol PF09250.6 g57900.t1 - 0.085 12.8 0 0.089 12.7 0 1.1 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:310810-311097 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~310810-311097 Pox_Ag35 PF03286.9 g18053.t1 - 0.064 12.7 3.8 0.067 12.7 2.6 1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:315926-316153 Augustus predicted protein sequence Tomato scaffold720_contigs=9~315926-316153 Trans_reg_C PF00486.23 g54331.t1 - 0.13 12.1 0.7 9.9 6.1 0 2.4 2 0 0 2 2 2 0 Transcriptional regulatory protein, C terminal | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:13920-17455 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~13920-17455 UBN2 PF14223.1 g26127.t1 - 0.00059 19.6 0 0.00076 19.2 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:123623-124372 Augustus predicted protein sequence Tomato scaffold943_contigs=4~123623-124372 Jnk-SapK_ap_N PF09744.4 g82869.t1 - 0.038 13.9 8.4 0.59 10.1 1.6 2 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:86434-86769 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~86434-86769 GPS PF01825.16 g57264.t1 - 0.047 13.7 0.2 0.1 12.7 0.2 1.6 1 0 0 1 1 1 0 Latrophilin/CL-1-like GPS domain | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:450462-450758 Augustus predicted protein sequence Tomato scaffold1829_contigs=9~450462-450758 YihI PF04220.7 g7204.t1 - 0.14 11.4 0.8 7.1 5.9 0.1 2.1 1 1 1 2 2 2 0 Der GTPase activator (YihI) | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:26258-28786 Augustus predicted protein sequence Tomato scaffold389_contigs=8~26258-28786 FAA_hydrolase PF01557.13 g58787.t1 - 0.11 11.9 0 0.15 11.4 0 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:235140-238664 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~235140-238664 zf-CCHC_4 PF14392.1 g44771.t1 - 0.029 14 1.4 0.056 13.1 1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1439_contigs=3, transcript_loc=scaffold1439_contigs=3:41450-43768 Augustus predicted protein sequence Tomato scaffold1439_contigs=3~41450-43768 IFP_35_N PF07334.8 g25867.t1 - 0.0079 16.1 0.7 0.013 15.4 0.5 1.4 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:92442-92836 Augustus predicted protein sequence Tomato scaffold937_contigs=20~92442-92836 PsbK PF02533.10 g79847.t1 - 1.5 8.7 5.6 0.22 11.4 1.1 1.7 2 0 0 2 2 2 0 Photosystem II 4 kDa reaction centre component | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:15151-15580 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~15151-15580 Pol_alpha_B_N PF08418.5 g39875.t1 - 0.02 14.4 1.8 0.019 14.5 1.2 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:188691-189149 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~188691-189149 FAM86 PF14904.1 g7727.t1 - 0.095 12.4 0.1 0.12 12 0 1.2 1 0 0 1 1 1 0 Family of unknown function | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:114603-114884 Augustus predicted protein sequence Tomato scaffold406_contigs=8~114603-114884 DegT_DnrJ_EryC1 PF01041.12 g3269.t1 - 0.071 12.1 0 0.097 11.6 0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:139376-141160 Augustus predicted protein sequence Tomato scaffold265_contigs=4~139376-141160 Cupredoxin_1 PF13473.1 g48334.t1 - 0.1 12.4 0.2 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:30973-35525 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~30973-35525 TBCC PF07986.7 g47826.t1 - 0.0045 16.3 0 0.0081 15.5 0 1.3 1 0 0 1 1 1 1 Tubulin binding cofactor C | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:233825-234324 Augustus predicted protein sequence Tomato scaffold1499_contigs=18~233825-234324 SlyX PF04102.7 g69573.t1 - 0.093 13.1 0.3 0.093 13.1 0.2 1.7 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:163632-163916 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~163632-163916 AChE_tetra PF08674.5 g27597.t1 - 0.0097 15.4 0.9 0.015 14.7 0.7 1.3 1 0 0 1 1 1 1 Acetylcholinesterase tetramerisation domain | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:27810-28247 Augustus predicted protein sequence Tomato scaffold982_contigs=2~27810-28247 Nucleoplasmin PF03066.10 g14685.t1 - 0.0089 15.5 1.3 0.0089 15.5 0.9 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:168863-169213 Augustus predicted protein sequence Tomato scaffold599_contigs=8~168863-169213 DUF4283 PF14111.1 g12965.t1 - 0.059 12.4 0 0.12 11.4 0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:575241-576114 Augustus predicted protein sequence Tomato scaffold561_contigs=10~575241-576114 ATHILA PF03078.10 g77882.t1 - 0.017 13.6 0 0.076 11.5 0 2 3 0 0 3 3 3 0 ATHILA ORF-1 family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:682322-683197 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~682322-683197 COG2 PF06148.6 g69023.t1 - 0.022 14.6 0.2 0.027 14.3 0.1 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:146919-147251 Augustus predicted protein sequence Tomato scaffold2245_contigs=4~146919-147251 DBD_Tnp_Mut PF03108.10 g42263.t1 - 0.018 14.5 0 0.037 13.6 0 1.6 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1351_contigs=1, transcript_loc=scaffold1351_contigs=1:123540-123965 Augustus predicted protein sequence Tomato scaffold1351_contigs=1~123540-123965 YdjO PF14169.1 g3308.t1 - 0.0097 15.3 0 0.016 14.6 0 1.4 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:178428-178862 Augustus predicted protein sequence Tomato scaffold266_contigs=2~178428-178862 DUF1985 PF09331.6 g5450.t1 - 0.0000039 26.7 0 0.0000072 25.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold328_contigs=4, transcript_loc=scaffold328_contigs=4:1722-9918 Augustus predicted protein sequence Tomato scaffold328_contigs=4~1722-9918 DUF3432 PF11914.3 g756.t1 - 0.03 14.3 0.8 0.03 14.3 0.6 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3432) | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:437074-438385 Augustus predicted protein sequence Tomato scaffold95_contigs=9~437074-438385 FH2 PF02181.18 g18097.t1 - 0.026 13.3 0.1 0.042 12.7 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:417465-421129 Augustus predicted protein sequence Tomato scaffold720_contigs=9~417465-421129 FAR1 PF03101.10 g87085.t1 - 0.00054 20.4 0.1 0.00067 20.1 0.1 1.1 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold2934_contigs=1, transcript_loc=scaffold2934_contigs=1:19159-19368 Augustus predicted protein sequence Tomato scaffold2934_contigs=1~19159-19368 DUF4219 PF13961.1 g33630.t1 - 0.0024 17.2 0.1 0.0048 16.2 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:331939-332253 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~331939-332253 DUF2475 PF10629.4 g1677.t1 - 0.015 15.4 1.7 0.75 10 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2475) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:141695-142447 Augustus predicted protein sequence Tomato scaffold213_contigs=5~141695-142447 DUF2407 PF10302.4 g57480.t1 - 0.02 15.1 1.1 0.62 10.2 0.4 2.5 1 1 0 1 1 1 0 DUF2407 ubiquitin-like domain | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:213568-214176 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~213568-214176 TFIIF_alpha PF05793.7 g47262.t1 - 1 7.6 15.2 1.1 7.5 10.6 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:10760-11194 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~10760-11194 DBD_Tnp_Mut PF03108.10 g76367.t1 - 7.3E-009 35 0.1 9.8E-009 34.6 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:197471-197920 Augustus predicted protein sequence Tomato scaffold2624_contigs=4~197471-197920 DUF4162 PF13732.1 g87298.t1 - 0.22 12 1 49 4.5 0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4162) | Ref_seq=scaffold2991_contigs=1, transcript_loc=scaffold2991_contigs=1:1-2604 Augustus predicted protein sequence Tomato scaffold2991_contigs=1~1-2604 AF0941-like PF14591.1 g75860.t1 - 0.075 13 0 0.085 12.9 0 1.1 1 0 0 1 1 1 0 AF0941-like | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:104710-106574 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~104710-106574 Nucleoplasmin PF03066.10 g69013.t1 - 0.33 10.4 6.5 0.51 9.8 4.5 1.3 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:110783-112496 Augustus predicted protein sequence Tomato scaffold2245_contigs=4~110783-112496 Fox-1_C PF12414.3 g21279.t1 - 0.12 12.8 0.1 0.21 11.9 0 1.4 1 0 0 1 1 1 0 Calcitonin gene-related peptide regulator C terminal | Ref_seq=scaffold796_contigs=1, transcript_loc=scaffold796_contigs=1:26950-28088 Augustus predicted protein sequence Tomato scaffold796_contigs=1~26950-28088 DUF4472 PF14739.1 g4810.t1 - 0.0083 16.5 0.5 0.022 15.2 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4472) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:100749-101394 Augustus predicted protein sequence Tomato scaffold308_contigs=4~100749-101394 DUF2096 PF09869.4 g2634.t1 - 0.012 15.5 0 0.015 15.2 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:148408-149352 Augustus predicted protein sequence Tomato scaffold247_contigs=8~148408-149352 RNA_polI_A34 PF08208.6 g16803.t1 - 0.15 11.7 0.5 0.15 11.6 0.3 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:65743-65943 Augustus predicted protein sequence Tomato scaffold682_contigs=5~65743-65943 NAM-associated PF14303.1 g43883.t1 - 0.000069 23.2 3.4 0.000085 22.9 2.3 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1394_contigs=4, transcript_loc=scaffold1394_contigs=4:8320-8661 Augustus predicted protein sequence Tomato scaffold1394_contigs=4~8320-8661 BTV_NS2 PF04514.7 g1726.t1 - 0.69 8.7 12.6 0.84 8.4 8.7 1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:252064-252498 Augustus predicted protein sequence Tomato scaffold213_contigs=5~252064-252498 HD-ZIP_N PF04618.7 g9604.t1 - 3.2 8.3 5.3 7.3 7.1 3.7 1.8 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:147503-147931 Augustus predicted protein sequence Tomato scaffold462_contigs=7~147503-147931 DUF512 PF04459.7 g19631.t1 - 0.0071 15.4 0 0.0081 15.2 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF512) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:241194-243668 Augustus predicted protein sequence Tomato scaffold756_contigs=8~241194-243668 DUF2499 PF10693.4 g66588.t1 - 0.0033 17.4 3.2 0.0059 16.6 2.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2499) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:146363-152507 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~146363-152507 DUF2396 PF09654.5 g58258.t1 - 0.035 14 0.6 5.7 6.8 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2396) | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:12662-13473 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~12662-13473 MRI PF15325.1 g69526.t1 - 2.4 9.1 7.5 0.13 13.1 1.5 1.6 2 0 0 2 2 2 0 Modulator of retrovirus infection | Ref_seq=scaffold2302_contigs=9, transcript_loc=scaffold2302_contigs=9:10585-11752 Augustus predicted protein sequence Tomato scaffold2302_contigs=9~10585-11752 BRX_N PF13713.1 g16163.t1 - 0.1 12 0 0.18 11.2 0 1.4 1 0 0 1 1 1 0 Transcription factor BRX N-terminal domain | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:24017-24936 Augustus predicted protein sequence Tomato scaffold656_contigs=9~24017-24936 VMA21 PF09446.5 g79299.t1 - 1 9.2 4.3 1.5 8.8 3 1.5 1 1 0 1 1 1 0 VMA21-like domain | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:204360-204857 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~204360-204857 CAF-1_p150 PF11600.3 g82050.t1 - 0.0032 16.8 30.7 0.0035 16.7 21.3 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2735_contigs=2, transcript_loc=scaffold2735_contigs=2:20082-20459 Augustus predicted protein sequence Tomato scaffold2735_contigs=2~20082-20459 TOH_N PF12549.3 g40714.t1 - 0.0017 17.8 3.7 1.8 8.2 0 3.3 3 0 0 3 3 3 1 Tyrosine hydroxylase N terminal | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:175597-178152 Augustus predicted protein sequence Tomato scaffold1308_contigs=16~175597-178152 RP-C_C PF11800.3 g7004.t1 - 0.1 12.2 0.2 0.12 12 0.1 1 1 0 0 1 1 1 0 Replication protein C C-terminal region | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:156319-156723 Augustus predicted protein sequence Tomato scaffold386_contigs=10~156319-156723 DUF2121 PF09894.4 g6290.t1 - 0.018 14.3 1.2 0.03 13.6 0.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:156170-156893 Augustus predicted protein sequence Tomato scaffold357_contigs=6~156170-156893 Siah-Interact_N PF09032.6 g5652.t1 - 0.12 12.4 0.1 0.25 11.4 0 1.6 2 0 0 2 2 2 0 Siah interacting protein, N terminal | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:319016-319529 Augustus predicted protein sequence Tomato scaffold334_contigs=13~319016-319529 CENP-Q PF13094.1 g18433.t1 - 0.0009 19.2 1.5 0.0013 18.7 1 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:23526-24115 Augustus predicted protein sequence Tomato scaffold724_contigs=4~23526-24115 DUF4164 PF13747.1 g52529.t1 - 0.013 15.5 0.3 0.015 15.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:322142-322441 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~322142-322441 Toxin_24 PF08094.6 g79494.t1 - 2.6 7.7 19.6 2.3 7.8 0.8 4.2 3 1 1 4 4 4 0 Conotoxin TVIIA/GS family | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:15270-15734 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~15270-15734 RNase_H2-Ydr279 PF09468.5 g31709.t1 - 0.096 11.8 2 0.12 11.5 1.4 1.3 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:377357-378275 Augustus predicted protein sequence Tomato scaffold1083_contigs=11~377357-378275 ATHILA PF03078.10 g8722.t1 - 0.0085 14.7 0.3 1.1 7.7 0.1 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:24586-27562 Augustus predicted protein sequence Tomato scaffold434_contigs=1~24586-27562 DBD_Tnp_Mut PF03108.10 g70975.t1 - 0.000058 22.5 0 0.000094 21.9 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:235929-236873 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~235929-236873 HTH_20 PF12840.2 g78354.t1 - 0.0012 18.5 0 7.1 6.5 0 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:296447-299249 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~296447-299249 Transposase_28 PF04195.7 g68670.t1 - 0.0052 16 0.1 0.0078 15.5 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:32995-34062 Augustus predicted protein sequence Tomato scaffold2224_contigs=19~32995-34062 STAT6_C PF14596.1 g68914.t1 - 0.086 12.7 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 STAT6 C-terminal | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:84856-85194 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~84856-85194 DUF2423 PF10338.4 g74496.t1 - 0.26 11.3 3.3 0.49 10.4 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:58175-59220 Augustus predicted protein sequence Tomato scaffold2555_contigs=31~58175-59220 TMEM190 PF15431.1 g53694.t1 - 0.014 15.2 0.1 0.023 14.6 0 1.3 1 0 0 1 1 1 0 Transmembrane protein 190 | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:51599-53105 Augustus predicted protein sequence Tomato scaffold1701_contigs=25~51599-53105 DIRP PF06584.8 g44041.t1 - 0.011 15.6 0.4 2.8 7.8 0 2.2 2 0 0 2 2 2 0 DIRP | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:137867-141205 Augustus predicted protein sequence Tomato scaffold1403_contigs=11~137867-141205 PBP_sp32 PF07222.7 g84861.t1 - 0.0045 16.1 7.9 0.0051 16 5.5 1 1 0 0 1 1 1 1 Proacrosin binding protein sp32 | Ref_seq=scaffold2782_contigs=1, transcript_loc=scaffold2782_contigs=1:79160-80489 Augustus predicted protein sequence Tomato scaffold2782_contigs=1~79160-80489 Glyco_hydro_43 PF04616.9 g38783.t1 - 0.0021 17.2 0.8 0.95 8.4 0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 43 | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:12500-13259 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~12500-13259 YhjQ PF06564.7 g63242.t1 - 0.074 12.4 0 0.079 12.3 0 1.1 1 0 0 1 1 1 0 YhjQ protein | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:3924-4623 Augustus predicted protein sequence Tomato scaffold2033_contigs=2~3924-4623 Fil_haemagg_2 PF13332.1 g15325.t1 - 0.042 13.6 2.3 0.058 13.1 1.6 1.1 1 0 0 1 1 1 0 Haemagluttinin repeat | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:122239-122841 Augustus predicted protein sequence Tomato scaffold624_contigs=9~122239-122841 DUF2389 PF09493.5 g3247.t1 - 0.039 14.2 0 0.066 13.4 0 1.3 1 0 0 1 1 1 0 Tryptophan-rich protein (DUF2389) | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:8529-8852 Augustus predicted protein sequence Tomato scaffold265_contigs=4~8529-8852 zf-CCHC_6 PF15288.1 g32220.t1 - 0.22 11.2 0.2 0.22 11.2 0.1 2.7 2 1 1 3 3 3 0 Zinc knuckle | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:194360-194857 Augustus predicted protein sequence Tomato scaffold1101_contigs=16~194360-194857 DUF4139 PF13598.1 g6087.t1 - 1.7 7.8 7.8 2.4 7.4 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:63531-64509 Augustus predicted protein sequence Tomato scaffold350_contigs=4~63531-64509 PspA_IM30 PF04012.7 g48359.t1 - 0.0038 16.6 1.7 0.0048 16.2 1.2 1.2 1 0 0 1 1 1 1 PspA/IM30 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:107164-108244 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~107164-108244 RVT_3 PF13456.1 g9006.t1 - 0.0034 17.1 0 0.0052 16.5 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:362097-362574 Augustus predicted protein sequence Tomato scaffold443_contigs=11~362097-362574 Spot_14 PF07084.7 g15727.t1 - 0.11 12.3 0 0.27 11 0 1.6 2 0 0 2 2 2 0 Thyroid hormone-inducible hepatic protein Spot 14 | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:44451-46619 Augustus predicted protein sequence Tomato scaffold641_contigs=2~44451-46619 TTKRSYEDQ PF10212.4 g16317.t1 - 0.0083 15.1 0.1 0.0091 14.9 0.1 1 1 0 0 1 1 1 1 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:149260-149511 Augustus predicted protein sequence Tomato scaffold668_contigs=10~149260-149511 SRP72 PF08492.7 g58744.t1 - 0.22 11.8 5.3 0.42 11 1.2 2.6 2 0 0 2 2 2 0 SRP72 RNA-binding domain | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:67178-68256 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~67178-68256 PetN PF03742.9 g42684.t1 - 4 7 7.1 6.6 6.3 0.1 2.8 3 0 0 3 3 3 0 PetN | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:63655-64214 Augustus predicted protein sequence Tomato scaffold1370_contigs=2~63655-64214 Nbl1_Borealin_N PF10444.4 g51647.t1 - 0.075 12.4 0.1 0.16 11.3 0 1.5 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:5325-5669 Augustus predicted protein sequence Tomato scaffold1620_contigs=20~5325-5669 DUF58 PF01882.13 g74917.t1 - 0.067 13.3 0.7 0.18 11.9 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF58 | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:34316-36083 Augustus predicted protein sequence Tomato scaffold2578_contigs=10~34316-36083 Imm49 PF15660.1 g39977.t1 - 0.033 14.2 0.2 13 5.9 0 2.6 2 1 0 2 2 2 0 Immunity protein 49 | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:25520-27072 Augustus predicted protein sequence Tomato scaffold1285_contigs=4~25520-27072 gag-asp_proteas PF13975.1 g2968.t1 - 0.000054 22.9 0 0.00014 21.6 0 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:229914-230279 Augustus predicted protein sequence Tomato scaffold257_contigs=2~229914-230279 Delta_lysin PF05372.6 g3363.t1 - 0.0000033 26.3 0.1 0.1 11.9 0 2.3 2 0 0 2 2 2 2 Delta lysin family | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:141053-142725 Augustus predicted protein sequence Tomato scaffold270_contigs=10~141053-142725 C4 PF01413.14 g14988.t1 - 0.076 12.9 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 C-terminal tandem repeated domain in type 4 procollagen | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:212187-214183 Augustus predicted protein sequence Tomato scaffold614_contigs=10~212187-214183 DUF1985 PF09331.6 g71034.t1 - 0.0002 21.2 0 0.00039 20.2 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:533073-540121 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~533073-540121 Glyco_transf_11 PF01531.11 g54618.t1 - 0.018 14 0 0.021 13.8 0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 11 | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:246649-247495 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~246649-247495 DUF3348 PF11828.3 g51543.t1 - 0.05 13 0 0.074 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3348) | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:261518-265415 Augustus predicted protein sequence Tomato scaffold1616_contigs=7~261518-265415 ORC5_C PF14630.1 g72784.t1 - 0.013 14.9 0.3 0.023 14.1 0.2 1.3 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 5 C-terminus | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:64244-65326 Augustus predicted protein sequence Tomato scaffold2426_contigs=10~64244-65326 Transposase_21 PF02992.9 g66214.t1 - 0.089 11.8 0.1 0.11 11.6 0 1.3 1 0 0 1 1 1 0 Transposase family tnp2 | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:161310-163438 Augustus predicted protein sequence Tomato scaffold2154_contigs=6~161310-163438 Hema_stalk PF08720.5 g85823.t1 - 0.11 11.9 0.1 0.11 11.9 0.1 1.4 2 0 0 2 2 2 0 Influenza C hemagglutinin stalk | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:16222-16970 Augustus predicted protein sequence Tomato scaffold2823_contigs=1~16222-16970 DUF3584 PF12128.3 g62555.t1 - 0.00036 18 6.1 0.00041 17.8 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:164058-165026 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~164058-165026 CAF-1_p150 PF11600.3 g60114.t1 - 0.000049 22.8 23.9 0.000052 22.7 16.6 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:71277-71825 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~71277-71825 HSP90 PF00183.13 g49655.t1 - 0.12 10.7 4 0.15 10.4 2.8 1 1 0 0 1 1 1 0 Hsp90 protein | Ref_seq=scaffold1544_contigs=6, transcript_loc=scaffold1544_contigs=6:73711-74150 Augustus predicted protein sequence Tomato scaffold1544_contigs=6~73711-74150 2Fe-2S_Ferredox PF11591.3 g66568.t1 - 3.6 7.3 5.1 0.9 9.2 0.3 2.4 2 1 0 2 2 2 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:99776-100180 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~99776-100180 TraI PF07057.6 g67451.t1 - 0.038 13.9 2.4 1.2 9.1 0.2 2.2 1 1 1 2 2 2 0 DNA helicase TraI | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:374590-379060 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~374590-379060 DUF2708 PF10917.3 g81701.t1 - 0.014 15.2 0.9 1.2 8.9 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2708) | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:162764-166023 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~162764-166023 Tachykinin PF02202.11 g9070.t1 - 0.057 13.1 0.3 0.15 11.8 0.2 1.7 1 0 0 1 1 1 0 Tachykinin family | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:27051-27266 Augustus predicted protein sequence Tomato scaffold446_contigs=6~27051-27266 Xin PF08043.7 g57842.t1 - 0.017 14.7 0 0.045 13.4 0 1.7 1 0 0 1 1 1 0 Xin repeat | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:63072-63533 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~63072-63533 Stig1 PF04885.8 g60240.t1 - 0.038 14.1 0.9 0.067 13.3 0.6 1.4 1 0 0 1 1 1 0 Stigma-specific protein, Stig1 | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:17012-18936 Augustus predicted protein sequence Tomato scaffold1945_contigs=4~17012-18936 DUF1672 PF07901.6 g37945.t1 - 0.12 11.3 0.2 0.17 10.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1672) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:304404-307073 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~304404-307073 MHCassoc_trimer PF08831.5 g29109.t1 - 0.12 12.2 3.1 0.24 11.2 1.7 2 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:13477-14139 Augustus predicted protein sequence Tomato scaffold1013_contigs=9~13477-14139 zf-CCHC PF00098.18 g69357.t1 - 0.23 11.4 1.4 0.24 11.3 0 1.8 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:128820-129164 Augustus predicted protein sequence Tomato scaffold2271_contigs=9~128820-129164 YdjO PF14169.1 g660.t1 - 0.035 13.5 1.1 0.053 12.9 0.1 1.7 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold94_contigs=2, transcript_loc=scaffold94_contigs=2:45198-48036 Augustus predicted protein sequence Tomato scaffold94_contigs=2~45198-48036 Bap31 PF05529.7 g20325.t1 - 0.72 9.2 3.2 1 8.8 2.3 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:47344-48128 Augustus predicted protein sequence Tomato scaffold773_contigs=6~47344-48128 Parvo_coat PF00740.13 g27292.t1 - 0.021 13.8 0.1 0.025 13.5 0 1.1 1 0 0 1 1 1 0 Parvovirus coat protein VP2 | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:298812-299430 Augustus predicted protein sequence Tomato scaffold974_contigs=15~298812-299430 DUF4653 PF15546.1 g24178.t1 - 0.015 14.5 1.6 0.019 14.2 1.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4653) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:507496-508078 Augustus predicted protein sequence Tomato scaffold876_contigs=13~507496-508078 DUF3359 PF11839.3 g17124.t1 - 0.069 13.4 4.4 0.15 12.4 3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:247708-250459 Augustus predicted protein sequence Tomato scaffold694_contigs=2~247708-250459 EGF_2 PF07974.8 g77386.t1 - 0.12 12.5 4.3 0.7 10.1 0.6 2.5 2 0 0 2 2 2 0 EGF-like domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:192769-194836 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~192769-194836 SQS_PSY PF00494.14 g51353.t1 - 0.066 12.4 0.1 0.099 11.9 0.1 1.2 1 0 0 1 1 1 0 Squalene/phytoene synthase | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:229444-230140 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~229444-230140 PsbP PF01789.11 g79823.t1 - 0.13 11.7 0 0.2 11 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:145721-146596 Augustus predicted protein sequence Tomato scaffold2702_contigs=9~145721-146596 DUF778 PF05608.7 g2290.t1 - 0.093 12.6 0 0.13 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF778) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:31794-32366 Augustus predicted protein sequence Tomato scaffold234_contigs=2~31794-32366 Toxin_49 PF15529.1 g40958.t1 - 0.04 13.8 0.4 7.2 6.6 0.1 2.1 2 0 0 2 2 2 0 Putative toxin 49 | Ref_seq=scaffold1316_contigs=2, transcript_loc=scaffold1316_contigs=2:1-663 Augustus predicted protein sequence Tomato scaffold1316_contigs=2~1-663 APG6 PF04111.7 g51655.t1 - 0.011 14.8 2.5 0.015 14.3 1.7 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:10998-12986 Augustus predicted protein sequence Tomato scaffold1620_contigs=20~10998-12986 GCIP PF13324.1 g70358.t1 - 0.0029 16.8 1 0.0083 15.3 0.9 1.7 2 0 0 2 2 2 1 Grap2 and cyclin-D-interacting | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:657493-659192 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~657493-659192 FKBP_N PF01346.13 g80854.t1 - 0.017 15.1 4 0.023 14.7 2.8 1.2 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:98909-99304 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~98909-99304 DUF4413 PF14372.1 g2365.t1 - 0.00000011 31.7 0 0.00000015 31.2 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:83872-84189 Augustus predicted protein sequence Tomato scaffold235_contigs=2~83872-84189 SlyX PF04102.7 g60830.t1 - 0.25 11.7 1.8 0.54 10.6 1.2 1.5 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:489596-490000 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~489596-490000 PDR_CDR PF06422.7 g7749.t1 - 0.12 12 0.1 0.66 9.6 0 2 2 0 0 2 2 2 0 CDR ABC transporter | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:200004-201626 Augustus predicted protein sequence Tomato scaffold406_contigs=8~200004-201626 RgpF PF05045.7 g24507.t1 - 0.049 12.1 0.1 0.049 12.1 0.1 1 1 0 0 1 1 1 0 Rhamnan synthesis protein F | Ref_seq=scaffold884_contigs=5, transcript_loc=scaffold884_contigs=5:102626-103913 Augustus predicted protein sequence Tomato scaffold884_contigs=5~102626-103913 PBP1_TM PF14812.1 g81835.t1 - 0.066 13.5 0.5 0.085 13.1 0.3 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:994092-994437 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~994092-994437 DUF424 PF04242.8 g104.t1 - 0.0026 17.7 0.1 0.0038 17.2 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF424) | Ref_seq=scaffold6_contigs=8, transcript_loc=scaffold6_contigs=8:201161-202612 Augustus predicted protein sequence Tomato scaffold6_contigs=8~201161-202612 IFP_35_N PF07334.8 g38805.t1 - 0.017 15 1.8 0.026 14.5 1.2 1.6 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:137692-137970 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~137692-137970 DUF4219 PF13961.1 g38737.t1 - 0.017 14.5 0.2 0.077 12.4 0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:183107-185730 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~183107-185730 AAA_32 PF13654.1 g63258.t1 - 0.087 11.4 0 0.11 11.1 0 1.1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:61009-61386 Augustus predicted protein sequence Tomato scaffold2033_contigs=2~61009-61386 Mlo PF03094.10 g39716.t1 - 0.0014 16.8 0.1 0.0017 16.5 0.1 1 1 0 0 1 1 1 1 Mlo family | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:74097-77879 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~74097-77879 BTV_NS2 PF04514.7 g1079.t1 - 0.015 14.2 0.9 0.022 13.6 0.6 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:14801-19555 Augustus predicted protein sequence Tomato scaffold189_contigs=2~14801-19555 UBN2 PF14223.1 g85742.t1 - 0.000059 22.8 0.1 0.00015 21.4 0 1.8 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:15772-19379 Augustus predicted protein sequence Tomato scaffold2817_contigs=1~15772-19379 ATHILA PF03078.10 g86010.t1 - 0.000089 21.2 0 0.00026 19.7 0 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:26715-28337 Augustus predicted protein sequence Tomato scaffold2832_contigs=1~26715-28337 TOBE PF03459.12 g3622.t1 - 0.089 12.9 0.1 19 5.4 0 2.8 4 0 0 4 4 4 0 TOBE domain | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:13300-15546 Augustus predicted protein sequence Tomato scaffold279_contigs=4~13300-15546 Vac_Fusion PF02346.11 g70723.t1 - 0.0069 15.7 0 4.2 6.8 0 2.3 2 0 0 2 2 2 2 Chordopoxvirus fusion protein | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:106589-107256 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~106589-107256 Trypan_PARP PF05887.6 g76845.t1 - 0.53 10.1 11.4 0.7 9.7 7.9 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:79273-80115 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~79273-80115 Muted PF14942.1 g41475.t1 - 0.15 11.9 1.5 0.17 11.7 1 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:169396-171059 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~169396-171059 IncA PF04156.9 g38711.t1 - 0.014 15 1.1 0.019 14.5 0.7 1.1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:95464-97574 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~95464-97574 RmuC PF02646.11 g34149.t1 - 0.089 11.6 0.1 0.11 11.3 0.1 1.1 1 0 0 1 1 1 0 RmuC family | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:3264-3527 Augustus predicted protein sequence Tomato scaffold1143_contigs=1~3264-3527 DUF3432 PF11914.3 g55764.t1 - 0.022 14.7 0.7 0.032 14.2 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3432) | Ref_seq=scaffold1769_contigs=11, transcript_loc=scaffold1769_contigs=11:45424-46097 Augustus predicted protein sequence Tomato scaffold1769_contigs=11~45424-46097 CENP-F_leu_zip PF10473.4 g9654.t1 - 0.047 13.5 1.5 0.073 12.9 1 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold464_contigs=10, transcript_loc=scaffold464_contigs=10:21218-21775 Augustus predicted protein sequence Tomato scaffold464_contigs=10~21218-21775 PPR PF01535.15 g16966.t1 - 0.00021 21 0 0.00041 20.1 0 1.4 1 0 0 1 1 1 1 PPR repeat | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:221152-222990 Augustus predicted protein sequence Tomato scaffold687_contigs=8~221152-222990 SLT_L PF14718.1 g86405.t1 - 0.13 12.1 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Soluble lytic murein transglycosylase L domain | Ref_seq=scaffold2859_contigs=1, transcript_loc=scaffold2859_contigs=1:9376-9612 Augustus predicted protein sequence Tomato scaffold2859_contigs=1~9376-9612 PEN-2 PF10251.4 g39456.t1 - 0.077 13.2 0.6 0.14 12.3 0.4 1.5 1 1 0 1 1 1 0 Presenilin enhancer-2 subunit of gamma secretase | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:41880-42357 Augustus predicted protein sequence Tomato scaffold1271_contigs=3~41880-42357 NOA36 PF06524.7 g1919.t1 - 2.2 7.4 5.8 3.5 6.8 4 1.3 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:141055-144831 Augustus predicted protein sequence Tomato scaffold219_contigs=6~141055-144831 EBV-NA1 PF02905.9 g64567.t1 - 0.094 12.1 0 0.13 11.6 0 1.3 1 0 0 1 1 1 0 Epstein Barr virus nuclear antigen-1, DNA-binding domain | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:354958-357216 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~354958-357216 DUF2155 PF09923.4 g25561.t1 - 0.13 12.3 0 0.17 11.9 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2155) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:245458-245879 Augustus predicted protein sequence Tomato scaffold929_contigs=9~245458-245879 Retrotrans_gag PF03732.12 g82296.t1 - 0.028 14.4 0 0.039 14 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:52688-52978 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~52688-52978 YABBY PF04690.8 g46834.t1 - 0.0075 16.5 0.1 0.0083 16.3 0.1 1 1 0 0 1 1 1 1 YABBY protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:260843-261370 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~260843-261370 Glyco_trans_1_4 PF13692.1 g5202.t1 - 0.049 13.7 0 7.1 6.7 0 2.9 2 1 1 3 3 3 0 Glycosyl transferases group 1 | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:43171-46574 Augustus predicted protein sequence Tomato scaffold319_contigs=6~43171-46574 PH_6 PF15406.1 g27480.t1 - 0.057 13.4 0.1 0.071 13.1 0 1.1 1 0 0 1 1 1 0 Pleckstrin homology domain | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:237033-238106 Augustus predicted protein sequence Tomato scaffold980_contigs=13~237033-238106 CAP_N PF01213.14 g38451.t1 - 8.5 5.5 7.4 18 4.4 5.1 1.6 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1245_contigs=4, transcript_loc=scaffold1245_contigs=4:32543-33340 Augustus predicted protein sequence Tomato scaffold1245_contigs=4~32543-33340 DUF3628 PF12300.3 g21572.t1 - 4 7.4 10.5 6.7 6.7 7.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3628) | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:75815-77147 Augustus predicted protein sequence Tomato scaffold801_contigs=2~75815-77147 UBN2 PF14223.1 g41232.t1 - 0.00063 19.5 1.8 0.69 9.7 0 3.2 2 1 1 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:31579-33223 Augustus predicted protein sequence Tomato scaffold1328_contigs=9~31579-33223 Spidroin_MaSp PF11260.3 g74401.t1 - 1.3 9.1 5.4 0.36 10.9 1.7 1.5 1 1 0 2 2 2 0 Major ampullate spidroin 1 and 2 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:345414-345695 Augustus predicted protein sequence Tomato scaffold2538_contigs=14~345414-345695 RVT_3 PF13456.1 g2378.t1 - 0.00019 21.1 0 0.00037 20.2 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:127891-130666 Augustus predicted protein sequence Tomato scaffold235_contigs=2~127891-130666 DUF4219 PF13961.1 g30331.t1 - 0.0024 17.2 0.4 0.0048 16.2 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:98152-99333 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~98152-99333 DUF566 PF04484.7 g23360.t1 - 0.51 9.7 10.5 0.12 11.8 0.6 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF566) | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:87904-88719 Augustus predicted protein sequence Tomato scaffold858_contigs=4~87904-88719 DUF588 PF04535.7 g66160.t1 - 0.081 12.4 1.5 0.097 12.2 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF588) | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:196586-197101 Augustus predicted protein sequence Tomato scaffold2152_contigs=6~196586-197101 DUF834 PF05754.9 g66075.t1 - 0.74 9.6 6.2 1.4 8.8 0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF834) | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:46763-47431 Augustus predicted protein sequence Tomato scaffold2148_contigs=3~46763-47431 Cytidylate_kin2 PF13189.1 g71775.t1 - 0.23 11.3 1.4 0.34 10.8 0.9 1.2 1 0 0 1 1 1 0 Cytidylate kinase-like family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:202264-203034 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~202264-203034 B2-adapt-app_C PF09066.5 g30668.t1 - 0.02 14.7 0.4 4.3 7.2 0 2.1 1 1 1 2 2 2 0 Beta2-adaptin appendage, C-terminal sub-domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:511622-511849 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~511622-511849 Gag_spuma PF03276.9 g56252.t1 - 0.077 11.3 0.5 0.078 11.2 0.4 1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:72709-73020 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~72709-73020 SRP14 PF02290.10 g20159.t1 - 0.075 12.9 5.4 0.15 11.9 3.5 1.6 1 1 1 2 2 2 0 Signal recognition particle 14kD protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:104968-105234 Augustus predicted protein sequence Tomato scaffold768_contigs=4~104968-105234 Osmo_CC PF08946.5 g77617.t1 - 0.0041 17.1 1 0.0041 17.1 0.7 3.2 2 1 1 3 3 3 1 Osmosensory transporter coiled coil | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:179204-179926 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~179204-179926 FCP1_C PF09309.5 g23459.t1 - 0.075 12.3 1.4 0.11 11.8 1 1.1 1 0 0 1 1 1 0 FCP1, C-terminal | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:269247-270860 Augustus predicted protein sequence Tomato scaffold859_contigs=6~269247-270860 DUF4139 PF13598.1 g73808.t1 - 0.0096 15.2 1.6 1.6 7.9 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4139) | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:61280-61839 Augustus predicted protein sequence Tomato scaffold2510_contigs=23~61280-61839 RIX1 PF08167.7 g25692.t1 - 0.077 12.6 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 rRNA processing/ribosome biogenesis | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:234793-235083 Augustus predicted protein sequence Tomato scaffold930_contigs=4~234793-235083 RVP_2 PF08284.6 g22437.t1 - 0.00017 21.5 0 0.00017 21.5 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:37024-38773 Augustus predicted protein sequence Tomato scaffold830_contigs=3~37024-38773 KH_4 PF13083.1 g59295.t1 - 0.0062 16.1 0.1 3.7 7.2 0 2.3 2 0 0 2 2 2 2 KH domain | Ref_seq=scaffold1910_contigs=4, transcript_loc=scaffold1910_contigs=4:1-720 Augustus predicted protein sequence Tomato scaffold1910_contigs=4~1-720 UBN2 PF14223.1 g61338.t1 - 0.0013 18.5 0 0.0013 18.5 0 3.7 2 1 2 4 4 4 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1965_contigs=7, transcript_loc=scaffold1965_contigs=7:84689-85777 Augustus predicted protein sequence Tomato scaffold1965_contigs=7~84689-85777 DUF3177 PF11375.3 g49974.t1 - 8.5 5.7 7.5 10 5.5 5.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:39183-39455 Augustus predicted protein sequence Tomato scaffold1551_contigs=3~39183-39455 CAF-1_p150 PF11600.3 g52129.t1 - 0.002 17.5 28.7 0.0037 16.6 19.9 1.4 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:127092-130338 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~127092-130338 Caa3_CtaG PF09678.5 g59457.t1 - 0.0046 15.9 0.1 2.1 7.1 0 2.1 2 0 0 2 2 2 2 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:72244-72930 Augustus predicted protein sequence Tomato scaffold1923_contigs=35~72244-72930 DUF3800 PF12686.2 g13765.t1 - 0.0028 17.3 0.1 0.0052 16.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:105599-108118 Augustus predicted protein sequence Tomato scaffold582_contigs=8~105599-108118 DUF2457 PF10446.4 g86175.t1 - 0.015 14 23.8 0.027 13.2 16.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:22424-23320 Augustus predicted protein sequence Tomato scaffold2841_contigs=1~22424-23320 DUF383 PF04063.9 g23771.t1 - 0.068 12.6 0.1 0.083 12.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF383) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:235689-235973 Augustus predicted protein sequence Tomato scaffold865_contigs=7~235689-235973 Adeno_E3_14_5 PF04834.7 g24903.t1 - 0.12 12.7 1.1 0.25 11.7 0.8 1.5 1 0 0 1 1 1 0 Early E3 14.5 kDa protein | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:56490-57653 Augustus predicted protein sequence Tomato scaffold904_contigs=3~56490-57653 Trns_repr_metal PF02583.12 g22335.t1 - 0.036 14.2 0.5 0.078 13.1 0.1 1.7 2 0 0 2 2 2 0 Metal-sensitive transcriptional repressor | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:602912-603455 Augustus predicted protein sequence Tomato scaffold825_contigs=10~602912-603455 Pex16 PF08610.5 g57931.t1 - 0.032 13.2 0.8 0.044 12.7 0.6 1.2 1 0 0 1 1 1 0 Peroxisomal membrane protein (Pex16) | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:59951-60328 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~59951-60328 B3 PF02362.16 g879.t1 - 0.00000068 28.8 0.1 0.000001 28.2 0.1 1.3 1 0 0 1 1 1 1 B3 DNA binding domain | Ref_seq=scaffold173_contigs=3, transcript_loc=scaffold173_contigs=3:14078-14541 Augustus predicted protein sequence Tomato scaffold173_contigs=3~14078-14541 MDFI PF15316.1 g86154.t1 - 0.00038 20.5 0.8 0.00047 20.2 0.6 1.1 1 0 0 1 1 1 1 MyoD family inhibitor | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:10251-11139 Augustus predicted protein sequence Tomato scaffold2840_contigs=1~10251-11139 Wzz PF02706.10 g55960.t1 - 0.014 15.2 0.5 0.021 14.6 0.3 1.2 1 0 0 1 1 1 0 Chain length determinant protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:116717-117796 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~116717-117796 Vps5 PF09325.5 g78774.t1 - 0.052 12.7 0.2 0.075 12.2 0.2 1.1 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:15846-18932 Augustus predicted protein sequence Tomato scaffold2678_contigs=5~15846-18932 Retrotrans_gag PF03732.12 g70505.t1 - 0.00057 19.8 0.3 0.00076 19.5 0.2 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:117018-117505 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~117018-117505 MCR_beta_N PF02783.10 g65899.t1 - 0.036 13.5 0.3 0.12 11.8 0.2 1.8 1 1 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:69409-69915 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~69409-69915 Peptidase_S41 PF03572.13 g79100.t1 - 0.018 14.4 0.1 0.018 14.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase family S41 | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:183711-184022 Augustus predicted protein sequence Tomato scaffold2684_contigs=8~183711-184022 DUF2186 PF09952.4 g28218.t1 - 0.0046 17.2 0.1 0.0073 16.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2186) | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:164381-165291 Augustus predicted protein sequence Tomato scaffold993_contigs=5~164381-165291 Vps16_N PF04841.8 g76170.t1 - 0.069 11.6 0.2 0.097 11.1 0.2 1.2 1 0 0 1 1 1 0 Vps16, N-terminal region | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:26535-27171 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~26535-27171 DUF3618 PF12277.3 g13582.t1 - 0.14 12.2 0.1 1.8 8.6 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:47770-48015 Augustus predicted protein sequence Tomato scaffold578_contigs=5~47770-48015 Cortex-I_coil PF09304.5 g40072.t1 - 0.047 13.7 1.3 0.061 13.3 0.9 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:23129-23571 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~23129-23571 Fea1 PF07692.6 g65565.t1 - 0.13 11 0 0.14 10.9 0 1 1 0 0 1 1 1 0 Low iron-inducible periplasmic protein | Ref_seq=scaffold2132_contigs=4, transcript_loc=scaffold2132_contigs=4:148623-148895 Augustus predicted protein sequence Tomato scaffold2132_contigs=4~148623-148895 bZIP_1 PF00170.16 g2941.t1 - 0.043 13.7 4.8 0.3 11 0.7 2.5 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:170150-170743 Augustus predicted protein sequence Tomato scaffold257_contigs=2~170150-170743 HTH_22 PF13309.1 g40263.t1 - 0.1 12.3 0 0.17 11.6 0 1.4 1 0 0 1 1 1 0 HTH domain | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:75378-75734 Augustus predicted protein sequence Tomato scaffold1297_contigs=3~75378-75734 FAR1 PF03101.10 g74681.t1 - 0.0000034 27.4 0.7 0.0000059 26.7 0.5 1.4 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:364399-365334 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~364399-365334 DUF4172 PF13776.1 g58347.t1 - 0.096 12.7 0.1 0.64 10.1 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:148672-149786 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~148672-149786 TOBE PF03459.12 g8793.t1 - 0.018 15.1 3.1 4.3 7.5 0.2 4 2 1 2 4 4 4 0 TOBE domain | Ref_seq=scaffold440_contigs=3, transcript_loc=scaffold440_contigs=3:31123-32412 Augustus predicted protein sequence Tomato scaffold440_contigs=3~31123-32412 DUF2259 PF10016.4 g56537.t1 - 0.16 11.6 0.6 0.18 11.4 0.4 1.2 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:145198-145729 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~145198-145729 Toxin_39 PF15500.1 g80987.t1 - 0.092 12.8 0 0.1 12.7 0 1.1 1 0 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:108273-108512 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~108273-108512 DUF3363 PF11843.3 g10187.t1 - 0.0014 17.3 0.7 0.0015 17.2 0.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:85240-85572 Augustus predicted protein sequence Tomato scaffold486_contigs=3~85240-85572 Sigma70_r3 PF04539.11 g48919.t1 - 0.006 16.4 0 1 9.3 0 2.1 2 0 0 2 2 2 2 Sigma-70 region 3 | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:296094-296468 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~296094-296468 Trypan_PARP PF05887.6 g65952.t1 - 0.11 12.3 8 0.17 11.7 5.5 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:244245-244631 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~244245-244631 DUF4611 PF15387.1 g36278.t1 - 0.0036 17.4 0.5 0.013 15.6 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4611) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:176665-179022 Augustus predicted protein sequence Tomato scaffold1189_contigs=6~176665-179022 Acetyltransf_11 PF13720.1 g59911.t1 - 0.067 13.4 0 0.084 13.1 0 1.1 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:274996-275232 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~274996-275232 End_N_terminal PF12218.3 g81563.t1 - 0.052 13 0 0.082 12.3 0 1.4 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:95324-95692 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~95324-95692 KaiC PF06745.8 g18455.t1 - 0.021 13.9 0.8 0.025 13.6 0.6 1.3 1 0 0 1 1 1 0 KaiC | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:111958-112281 Augustus predicted protein sequence Tomato scaffold724_contigs=4~111958-112281 DUF4106 PF13388.1 g79653.t1 - 3.3 6.5 8.6 3.9 6.3 6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:26620-26898 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~26620-26898 ImmE5 PF11480.3 g69800.t1 - 0.12 12.2 0 15 5.4 0 2.3 2 0 0 2 2 2 0 Colicin-E5 Imm protein | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:14306-17902 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~14306-17902 HTH_psq PF05225.11 g19626.t1 - 0.093 12.2 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:228131-232439 Augustus predicted protein sequence Tomato scaffold756_contigs=8~228131-232439 DUF3123 PF11321.3 g20598.t1 - 0.078 13.2 0 0.11 12.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3123) | Ref_seq=scaffold776_contigs=2, transcript_loc=scaffold776_contigs=2:9955-13004 Augustus predicted protein sequence Tomato scaffold776_contigs=2~9955-13004 FlgD PF03963.9 g30013.t1 - 2.8 8 4.2 18 5.4 0.1 2.2 1 1 1 2 2 2 0 Flagellar hook capping protein - N-terminal region | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:187136-187474 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~187136-187474 BNIP2 PF12496.3 g24648.t1 - 0.012 15.7 0.2 0.012 15.7 0.1 1.9 2 0 0 2 2 2 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 | Ref_seq=scaffold892_contigs=7, transcript_loc=scaffold892_contigs=7:8699-11023 Augustus predicted protein sequence Tomato scaffold892_contigs=7~8699-11023 F-box-like PF12937.2 g75884.t1 - 0.13 11.9 1.8 2.8 7.7 0 2.2 2 0 0 2 2 2 0 F-box-like | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:162932-163216 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~162932-163216 Tox-SHH PF15652.1 g29406.t1 - 0.014 16 0 0.014 16 0 1.2 1 0 0 1 1 1 0 HNH/Endo VII superfamily toxin with a SHH signature | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:66536-66853 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~66536-66853 OAD_gamma PF04277.8 g27871.t1 - 0.054 13.8 0.2 0.068 13.5 0.1 1.2 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:93183-93428 Augustus predicted protein sequence Tomato scaffold985_contigs=1~93183-93428 DUF4279 PF14106.1 g64535.t1 - 0.033 14 0.2 2.7 7.9 0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:266920-267423 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~266920-267423 Phage_holin_3 PF05106.7 g8089.t1 - 0.047 13.6 0 0.071 13.1 0 1.3 1 1 0 1 1 1 0 Phage holin family (Lysis protein S) | Ref_seq=scaffold417_contigs=2, transcript_loc=scaffold417_contigs=2:48489-48761 Augustus predicted protein sequence Tomato scaffold417_contigs=2~48489-48761 ATHILA PF03078.10 g71919.t1 - 0.0000044 25.5 0.1 0.000029 22.8 0 2.1 2 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:334878-337881 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~334878-337881 zf-CCHC PF00098.18 g11979.t1 - 0.00047 19.9 0.2 0.0011 18.7 0.2 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:6962-8014 Augustus predicted protein sequence Tomato scaffold535_contigs=8~6962-8014 Lipase_bact_N PF12262.3 g65657.t1 - 0.014 14.6 0 0.032 13.4 0 1.5 1 1 1 2 2 2 0 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:74796-75377 Augustus predicted protein sequence Tomato scaffold2136_contigs=4~74796-75377 DUF3329 PF11808.3 g4755.t1 - 0.23 11.5 1.6 0.35 10.9 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3329) | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:89424-94078 Augustus predicted protein sequence Tomato scaffold307_contigs=2~89424-94078 Macoilin PF09726.4 g35427.t1 - 0.029 12.6 0.3 0.034 12.4 0.2 1.1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:377860-380728 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~377860-380728 CCDC155 PF14662.1 g23506.t1 - 0.000048 23 1.1 0.000073 22.4 0.8 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:36532-38896 Augustus predicted protein sequence Tomato scaffold862_contigs=2~36532-38896 Bac_DNA_binding PF00216.16 g68659.t1 - 0.04 13.9 0.6 0.058 13.4 0.4 1.2 1 0 0 1 1 1 0 Bacterial DNA-binding protein | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:75412-75708 Augustus predicted protein sequence Tomato scaffold2223_contigs=8~75412-75708 Cwf_Cwc_15 PF04889.7 g38690.t1 - 0.015 15 0.1 0.015 15 0.1 1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:43754-44051 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~43754-44051 APG6 PF04111.7 g39639.t1 - 0.0085 15.1 0.9 0.0087 15.1 0.6 1 1 0 0 1 1 1 1 Autophagy protein Apg6 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:577313-577661 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~577313-577661 UBN2_2 PF14227.1 g66818.t1 - 0.019 14.5 0 0.026 14.1 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:131314-132128 Augustus predicted protein sequence Tomato scaffold2170_contigs=8~131314-132128 MDM1 PF15501.1 g41332.t1 - 0.0085 15 2.4 0.01 14.8 1.6 1.1 1 0 0 1 1 1 1 Nuclear protein MDM1 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:1631-1933 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~1631-1933 Retrotrans_gag PF03732.12 g68511.t1 - 0.049 13.6 0.1 0.096 12.7 0.1 1.6 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2214_contigs=5, transcript_loc=scaffold2214_contigs=5:41125-41631 Augustus predicted protein sequence Tomato scaffold2214_contigs=5~41125-41631 Mad3_BUB1_I PF08311.7 g9923.t1 - 0.061 13.1 0 0.1 12.4 0 1.3 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:185529-186176 Augustus predicted protein sequence Tomato scaffold478_contigs=9~185529-186176 Trypan_PARP PF05887.6 g75351.t1 - 3.2 7.5 15.6 3.8 7.3 10.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:67065-67482 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~67065-67482 Herpes_LAMP2 PF06126.6 g18261.t1 - 0.044 12.1 0.1 0.051 11.9 0.1 1 1 0 0 1 1 1 0 Herpesvirus Latent membrane protein 2 | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:92750-93088 Augustus predicted protein sequence Tomato scaffold721_contigs=12~92750-93088 UBN2_2 PF14227.1 g40295.t1 - 0.11 12.1 1 0.12 11.9 0 1.6 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:74272-74682 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~74272-74682 Luteo_Vpg PF01659.11 g20104.t1 - 0.16 11.6 0.5 0.44 10.2 0.1 1.7 2 0 0 2 2 2 0 Luteovirus putative VPg genome linked protein | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:330018-330395 Augustus predicted protein sequence Tomato scaffold767_contigs=5~330018-330395 NB-ARC PF00931.17 g49231.t1 - 0.000001 27.8 0 0.0000011 27.7 0 1 1 0 0 1 1 1 1 NB-ARC domain | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:114096-114420 Augustus predicted protein sequence Tomato scaffold1529_contigs=6~114096-114420 zf-CCHC PF00098.18 g13642.t1 - 0.0001 22 1 0.00018 21.2 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:219955-220563 Augustus predicted protein sequence Tomato scaffold578_contigs=5~219955-220563 DUF1509 PF07420.6 g11859.t1 - 0.25 10.5 4.4 0.31 10.2 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:72673-75956 Augustus predicted protein sequence Tomato scaffold530_contigs=12~72673-75956 ATHILA PF03078.10 g46514.t1 - 0.014 13.9 0 0.017 13.7 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:316924-317294 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~316924-317294 Delta_lysin PF05372.6 g87576.t1 - 0.036 13.4 0.1 0.061 12.6 0 1.2 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold3333_contigs=1, transcript_loc=scaffold3333_contigs=1:530-976 Augustus predicted protein sequence Tomato scaffold3333_contigs=1~530-976 RAP1 PF07218.6 g30863.t1 - 0.091 10.8 1.3 0.097 10.7 0.9 1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:68029-68686 Augustus predicted protein sequence Tomato scaffold1048_contigs=2~68029-68686 Cut8_N PF14482.1 g41493.t1 - 0.17 11.9 1.6 0.48 10.4 1.1 2 1 1 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:235919-236299 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~235919-236299 Resistin PF06954.6 g70848.t1 - 0.044 14 0.2 0.052 13.8 0.1 1.2 1 0 0 1 1 1 0 Resistin | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:319023-319930 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~319023-319930 TrbC PF04956.8 g16220.t1 - 0.094 12.7 0 0.11 12.5 0 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family | Ref_seq=scaffold663_contigs=3, transcript_loc=scaffold663_contigs=3:6141-6389 Augustus predicted protein sequence Tomato scaffold663_contigs=3~6141-6389 DUF1002 PF06207.6 g75530.t1 - 0.085 12.1 6.3 0.12 11.6 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:46166-46804 Augustus predicted protein sequence Tomato scaffold2600_contigs=18~46166-46804 TnpW PF14202.1 g11382.t1 - 0.057 13 0.1 0.089 12.3 0.1 1.3 1 0 0 1 1 1 0 Transposon-encoded protein TnpW | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:464149-465702 Augustus predicted protein sequence Tomato scaffold523_contigs=15~464149-465702 COX1 PF00115.15 g25595.t1 - 0.12 10.9 0 0.15 10.6 0 1.1 1 0 0 1 1 1 0 Cytochrome C and Quinol oxidase polypeptide I | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:361473-362030 Augustus predicted protein sequence Tomato scaffold929_contigs=9~361473-362030 PAT1 PF09770.4 g30046.t1 - 6.6 4.8 19 8.5 4.4 13.2 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:347960-349354 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~347960-349354 FH2 PF02181.18 g24939.t1 - 0.059 12.2 0.3 0.12 11.2 0.1 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:7000-7737 Augustus predicted protein sequence Tomato scaffold907_contigs=7~7000-7737 Herpeto_peptide PF14409.1 g39277.t1 - 0.28 10.9 1.4 0.41 10.4 0 2 3 0 0 3 3 3 0 Ribosomally synthesized peptide in Herpetosiphon | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:226576-226881 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~226576-226881 UNC119_bdg PF15435.1 g14063.t1 - 0.017 14.4 0 0.02 14.2 0 1.1 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:345181-348108 Augustus predicted protein sequence Tomato scaffold583_contigs=2~345181-348108 DUF3552 PF12072.3 g31151.t1 - 0.025 13.7 0.3 0.026 13.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:1-266 Augustus predicted protein sequence Tomato scaffold1064_contigs=7~1-266 PBP1_TM PF14812.1 g26273.t1 - 1.7 9 11 11 6.4 1.7 2.2 1 1 1 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold946_contigs=4, transcript_loc=scaffold946_contigs=4:87835-88203 Augustus predicted protein sequence Tomato scaffold946_contigs=4~87835-88203 Tymo_45kd_70kd PF03251.8 g35496.t1 - 0.067 11.8 0.2 0.085 11.5 0.1 1.1 1 0 0 1 1 1 0 Tymovirus 45/70Kd protein | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:261186-261841 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~261186-261841 PROCT PF08084.6 g83909.t1 - 0.017 14.8 0 0.022 14.4 0 1.1 1 0 0 1 1 1 0 PROCT (NUC072) domain | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:91419-92828 Augustus predicted protein sequence Tomato scaffold2762_contigs=5~91419-92828 DC_STAMP PF07782.8 g27653.t1 - 0.11 12.1 0 0.18 11.3 0 1.3 1 0 0 1 1 1 0 DC-STAMP-like protein | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:162735-167344 Augustus predicted protein sequence Tomato scaffold983_contigs=13~162735-167344 DBD_Tnp_Mut PF03108.10 g28746.t1 - 0.000025 23.7 0.2 0.00005 22.8 0.1 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:161225-163874 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~161225-163874 DUF4283 PF14111.1 g79709.t1 - 0.000000018 33.6 0.1 0.000000027 33 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:268073-268826 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~268073-268826 TALPID3 PF15324.1 g14392.t1 - 0.0083 13.5 0.3 0.009 13.4 0.2 1 1 0 0 1 1 1 1 Hedgehog signalling target | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:192046-192273 Augustus predicted protein sequence Tomato scaffold594_contigs=19~192046-192273 DUF4219 PF13961.1 g50938.t1 - 0.0003 20.1 0.7 0.00079 18.7 0.5 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:7413-7904 Augustus predicted protein sequence Tomato scaffold1580_contigs=5~7413-7904 Plasmid_parti PF01672.11 g1399.t1 - 0.0027 18.1 0.4 1.1 9.7 0.1 2.1 1 1 1 2 2 2 2 Putative plasmid partition protein | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:129826-130146 Augustus predicted protein sequence Tomato scaffold200_contigs=3~129826-130146 SAPS PF04499.10 g11642.t1 - 0.19 10.3 3.2 0.19 10.3 2.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:176363-177517 Augustus predicted protein sequence Tomato scaffold528_contigs=4~176363-177517 DBD_Tnp_Mut PF03108.10 g16370.t1 - 0.11 12 0 0.16 11.5 0 1.2 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:9760-10768 Augustus predicted protein sequence Tomato scaffold669_contigs=3~9760-10768 Tash_PEST PF07708.6 g23856.t1 - 8.9 6.4 12.7 4.4 7.3 3.7 2.5 2 0 0 2 2 2 0 Tash protein PEST motif | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:61064-61429 Augustus predicted protein sequence Tomato scaffold871_contigs=9~61064-61429 Tox-MPTase2 PF15638.1 g32030.t1 - 0.02 14.4 0.1 0.027 13.9 0.1 1.1 1 0 0 1 1 1 0 Metallopeptidase toxin 2 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:161546-162863 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~161546-162863 UPF0547 PF10571.4 g50393.t1 - 1.9 8.2 4.9 0.39 10.4 0.7 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:296588-296875 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~296588-296875 DUF2011 PF09428.5 g67504.t1 - 0.02 14.7 4.7 0.022 14.6 3.3 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2011) | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:98695-98988 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~98695-98988 zf-CCHC PF00098.18 g84034.t1 - 0.000022 24.1 0.9 0.000034 23.5 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:178713-179230 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~178713-179230 SURF6 PF04935.7 g51335.t1 - 0.12 11.6 2.9 0.17 11.1 1.9 1.5 1 1 0 1 1 1 0 Surfeit locus protein 6 | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:132725-133258 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~132725-133258 DUF2457 PF10446.4 g47680.t1 - 0.0058 15.4 11.6 0.0062 15.3 8.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:122951-124290 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~122951-124290 A1_Propeptide PF07966.7 g37767.t1 - 0.01 15.6 8.9 4.6 7.1 0.2 3.7 3 0 0 3 3 3 0 A1 Propeptide | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:253311-253604 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~253311-253604 MGS PF02142.17 g49810.t1 - 0.04 13.8 0 0.05 13.5 0 1.1 1 0 0 1 1 1 0 MGS-like domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:298762-299040 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~298762-299040 NPV_P10 PF05531.7 g59940.t1 - 0.033 14.4 0.1 0.042 14 0.1 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:332279-332593 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~332279-332593 DUF2201_N PF13203.1 g80466.t1 - 3.8 6.6 6.9 5 6.2 4.8 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:654717-655298 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~654717-655298 Crl PF07417.7 g50981.t1 - 0.085 12.5 0.1 0.14 11.8 0.1 1.4 1 1 0 1 1 1 0 Transcriptional regulator Crl | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:6759-7235 Augustus predicted protein sequence Tomato scaffold1596_contigs=1~6759-7235 Myosin_HC-like PF07058.6 g33815.t1 - 4.6 6.2 8.8 6.2 5.8 6.1 1.1 1 0 0 1 1 1 0 Myosin II heavy chain-like | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:94188-99202 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~94188-99202 IncA PF04156.9 g52958.t1 - 0.0039 16.8 0.7 0.0039 16.8 0.5 1.7 2 0 0 2 2 2 1 IncA protein | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:1-4355 Augustus predicted protein sequence Tomato scaffold1667_contigs=5~1-4355 DUF936 PF06075.7 g57574.t1 - 0.073 11.9 0.5 0.086 11.7 0.3 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:212466-213670 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~212466-213670 DUF3053 PF11254.3 g22947.t1 - 0.053 12.7 3.2 0.057 12.6 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3053) | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:156718-156960 Augustus predicted protein sequence Tomato scaffold840_contigs=5~156718-156960 NESP55 PF06390.7 g46605.t1 - 1.4 8.2 7.5 3.5 6.9 5.1 1.7 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:617334-617657 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~617334-617657 PI-PLC-X PF00388.14 g46003.t1 - 0.12 11.7 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:62784-63952 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~62784-63952 CReP_N PF10472.4 g19073.t1 - 0.087 11.5 0.1 2.1 6.9 0 2 1 1 0 2 2 2 0 eIF2-alpha phosphatase phosphorylation constitutive repressor | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:31503-32703 Augustus predicted protein sequence Tomato scaffold744_contigs=4~31503-32703 GAGA_bind PF06217.7 g70383.t1 - 0.0042 17 3.7 0.0046 16.9 2.6 1 1 0 0 1 1 1 1 GAGA binding protein-like family | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:45455-45872 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~45455-45872 Filaggrin PF03516.8 g80656.t1 - 0.17 12.3 0.8 0.17 12.3 0.5 1.6 2 0 0 2 2 2 0 Filaggrin | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:192402-192689 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~192402-192689 zf-CCHC_5 PF14787.1 g16441.t1 - 0.17 11.3 5.6 0.31 10.5 3.9 1.5 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:105963-106172 Augustus predicted protein sequence Tomato scaffold671_contigs=7~105963-106172 DUF4219 PF13961.1 g42178.t1 - 0.00018 20.8 0.5 0.00026 20.3 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:282051-282410 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~282051-282410 NAM-associated PF14303.1 g70134.t1 - 0.0023 18.2 1.5 0.0033 17.7 1 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:163604-164023 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~163604-164023 ROF PF07073.7 g64566.t1 - 0.13 12.2 0.5 0.36 10.8 0.4 1.8 1 0 0 1 1 1 0 Modulator of Rho-dependent transcription termination (ROF) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:352372-353748 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~352372-353748 DNA_pol3_a_NI PF14480.1 g2807.t1 - 0.1 12.2 0 0.21 11.2 0 1.4 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus I | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:40388-46725 Augustus predicted protein sequence Tomato scaffold255_contigs=10~40388-46725 p12I PF12233.3 g61828.t1 - 0.044 14 1 0.064 13.5 0.7 1.2 1 0 0 1 1 1 0 Human adult T cell leukemia/lymphoma virus protein | Ref_seq=scaffold1977_contigs=8, transcript_loc=scaffold1977_contigs=8:205673-209217 Augustus predicted protein sequence Tomato scaffold1977_contigs=8~205673-209217 HTH_Mga PF08280.6 g6225.t1 - 0.03 14 0.8 0.069 12.9 0.6 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:57549-58256 Augustus predicted protein sequence Tomato scaffold355_contigs=5~57549-58256 zf-CCHC PF00098.18 g60172.t1 - 0.00022 21 4.2 0.00037 20.2 2.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:232138-232644 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~232138-232644 DUF2215 PF10225.4 g55504.t1 - 0.013 14.9 3.5 0.02 14.3 2.4 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:445673-446128 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~445673-446128 PBP_sp32 PF07222.7 g16704.t1 - 0.066 12.3 3.6 0.1 11.7 2.5 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:49938-50507 Augustus predicted protein sequence Tomato scaffold677_contigs=5~49938-50507 gag-asp_proteas PF13975.1 g46690.t1 - 0.12 12.1 0 0.44 10.3 0 1.9 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:34186-34654 Augustus predicted protein sequence Tomato scaffold1485_contigs=2~34186-34654 Daxx PF03344.10 g56262.t1 - 0.97 7.8 12.4 1.2 7.5 8.6 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:98583-99490 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~98583-99490 DUF4608 PF15381.1 g13857.t1 - 0.018 15.1 5.6 0.41 10.8 1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:404177-404485 Augustus predicted protein sequence Tomato scaffold582_contigs=8~404177-404485 Ycf54 PF10674.4 g17528.t1 - 0.052 13.6 0 0.089 12.9 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2488) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:285298-289204 Augustus predicted protein sequence Tomato scaffold707_contigs=5~285298-289204 ATHILA PF03078.10 g73825.t1 - 0.000000027 32.8 0 0.0003 19.5 0 2.1 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:106787-107738 Augustus predicted protein sequence Tomato scaffold2510_contigs=23~106787-107738 ATHILA PF03078.10 g19285.t1 - 0.00000008 31.2 0.1 0.00000026 29.6 0.1 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold749_contigs=4, transcript_loc=scaffold749_contigs=4:88628-90271 Augustus predicted protein sequence Tomato scaffold749_contigs=4~88628-90271 DUF1625 PF07787.7 g57823.t1 - 0.15 11.2 0 0.2 10.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:11009-11401 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~11009-11401 DUF3415 PF11895.3 g7662.t1 - 0.11 12.3 0.3 0.29 11 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3415) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:102939-104101 Augustus predicted protein sequence Tomato scaffold405_contigs=10~102939-104101 FliJ PF02050.11 g6671.t1 - 0.095 12.7 0.1 0.16 12 0.1 1.4 1 0 0 1 1 1 0 Flagellar FliJ protein | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:214140-216488 Augustus predicted protein sequence Tomato scaffold380_contigs=11~214140-216488 Mlo PF03094.10 g85549.t1 - 0.13 10.3 0.3 0.23 9.5 0.2 1.4 1 0 0 1 1 1 0 Mlo family | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:690-1244 Augustus predicted protein sequence Tomato scaffold2809_contigs=1~690-1244 DUF4014 PF13198.1 g21182.t1 - 0.1 12.9 0.1 0.18 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:16856-17272 Augustus predicted protein sequence Tomato scaffold795_contigs=8~16856-17272 End3 PF12761.2 g5649.t1 - 0.035 13.7 0 0.052 13.1 0 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:312946-314810 Augustus predicted protein sequence Tomato scaffold334_contigs=13~312946-314810 STAT_int PF02865.12 g24610.t1 - 0.12 12.3 0.2 0.15 12 0.1 1.1 1 0 0 1 1 1 0 STAT protein, protein interaction domain | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:110666-111128 Augustus predicted protein sequence Tomato scaffold890_contigs=10~110666-111128 Sorting_nexin PF03700.8 g29545.t1 - 0.0017 18.4 3.3 0.0048 16.9 2.1 1.8 1 1 1 2 2 2 1 Sorting nexin, N-terminal domain | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:4340-4792 Augustus predicted protein sequence Tomato scaffold1029_contigs=5~4340-4792 DUF3235 PF11574.3 g46459.t1 - 0.34 11.1 1.8 0.35 11.1 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3235) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:195772-196077 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~195772-196077 DUF1320 PF07030.7 g12665.t1 - 0.14 11.8 0 0.22 11.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:681086-683434 Augustus predicted protein sequence Tomato scaffold556_contigs=11~681086-683434 IL32 PF15225.1 g72178.t1 - 0.0094 15.8 2.4 0.03 14.2 0.1 2 1 1 1 2 2 2 1 Interleukin 32 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:544671-545140 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~544671-545140 DUF1985 PF09331.6 g79111.t1 - 0.000011 25.2 0.1 0.034 13.9 0 2.4 2 1 1 3 3 3 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:249764-252277 Augustus predicted protein sequence Tomato scaffold2684_contigs=8~249764-252277 RAP-1 PF03085.10 g85462.t1 - 0.037 13.3 0 0.05 12.9 0 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:8098-8433 Augustus predicted protein sequence Tomato scaffold2805_contigs=1~8098-8433 DUF2651 PF10852.3 g37673.t1 - 0.012 15.9 0.4 5.9 7.3 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2651) | Ref_seq=scaffold1231_contigs=2, transcript_loc=scaffold1231_contigs=2:1-1057 Augustus predicted protein sequence Tomato scaffold1231_contigs=2~1-1057 DBD_Tnp_Mut PF03108.10 g47976.t1 - 0.000000031 33 0.6 0.000000045 32.5 0.4 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:238509-238988 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~238509-238988 Baculo_11_kDa PF06143.6 g36003.t1 - 0.0082 15.4 1.2 0.016 14.5 0.8 1.4 1 0 0 1 1 1 1 Baculovirus 11 kDa family | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:37924-43102 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~37924-43102 zf-CCHC PF00098.18 g60275.t1 - 0.0004 20.1 1.1 0.00069 19.4 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:151215-152623 Augustus predicted protein sequence Tomato scaffold1945_contigs=4~151215-152623 WASH-7_C PF14746.1 g50933.t1 - 0.076 12.6 0 0.085 12.4 0 1.1 1 0 0 1 1 1 0 WASH complex subunit 7, C-terminal | Ref_seq=scaffold1579_contigs=3, transcript_loc=scaffold1579_contigs=3:49627-50591 Augustus predicted protein sequence Tomato scaffold1579_contigs=3~49627-50591 UBN2 PF14223.1 g30552.t1 - 0.06 13.1 1.8 0.26 11.1 0.1 2.2 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:104379-105992 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~104379-105992 EMP24_GP25L PF01105.19 g17060.t1 - 0.062 13 0 0.072 12.8 0 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:44545-46648 Augustus predicted protein sequence Tomato scaffold694_contigs=2~44545-46648 DUF4219 PF13961.1 g6674.t1 - 0.023 14.1 0.1 0.032 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:236788-237030 Augustus predicted protein sequence Tomato scaffold380_contigs=11~236788-237030 DUF4554 PF15091.1 g57584.t1 - 0.6 8.7 4 0.89 8.2 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4554) | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:245759-246820 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~245759-246820 ABC_tran_2 PF12848.2 g15705.t1 - 0.0012 18.6 0.9 0.0015 18.3 0.6 1.1 1 0 0 1 1 1 1 ABC transporter | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:94730-94966 Augustus predicted protein sequence Tomato scaffold640_contigs=3~94730-94966 DUF2681 PF10883.3 g65895.t1 - 0.037 14.2 3.6 0.052 13.7 2.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:52996-53304 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~52996-53304 Troponin-I_N PF11636.3 g33402.t1 - 1.1 8.9 3 0.83 9.3 0.3 2 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:932132-932821 Augustus predicted protein sequence Tomato scaffold1126_contigs=23~932132-932821 Adaptin_binding PF10199.4 g59716.t1 - 0.013 15.8 5.7 0.013 15.8 4 1.6 2 0 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:92053-93702 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~92053-93702 EII-Sor PF03609.9 g85088.t1 - 0.11 11.7 0 0.15 11.3 0 1.1 1 0 0 1 1 1 0 PTS system sorbose-specific iic component | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:93079-97849 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~93079-97849 Neuregulin PF02158.10 g57678.t1 - 0.044 12.5 0.6 0.063 12 0.2 1.3 1 1 0 1 1 1 0 Neuregulin family | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:235440-236403 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~235440-236403 Red1 PF07964.6 g65007.t1 - 0.66 8 4.5 0.78 7.8 3.1 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:42193-42714 Augustus predicted protein sequence Tomato scaffold2109_contigs=23~42193-42714 DUF4415 PF14384.1 g48416.t1 - 0.005 16.9 0.1 0.31 11.2 0 2.7 1 1 2 3 3 3 1 Domain of unknown function (DUF4415) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:16039-16308 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~16039-16308 CDP-OH_P_tran_2 PF08009.6 g1639.t1 - 3.2 7.5 6.6 1.6 8.5 0.3 2.5 2 1 0 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:9754-15068 Augustus predicted protein sequence Tomato scaffold213_contigs=5~9754-15068 PAT1 PF09770.4 g4105.t1 - 0.03 12.5 12.8 0.041 12.1 8.9 1.2 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:8475-13638 Augustus predicted protein sequence Tomato scaffold293_contigs=5~8475-13638 LpxD PF04613.9 g19848.t1 - 0.027 14 0 0.045 13.2 0 1.4 1 0 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:81468-82588 Augustus predicted protein sequence Tomato scaffold760_contigs=13~81468-82588 Stathmin PF00836.14 g64020.t1 - 0.0066 16 0.4 0.011 15.3 0.3 1.4 1 0 0 1 1 1 1 Stathmin family | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:10012-11289 Augustus predicted protein sequence Tomato scaffold2050_contigs=3~10012-11289 DUF241 PF03087.9 g46545.t1 - 0.027 13.9 11.5 0.071 12.6 7.7 2 1 1 0 1 1 1 0 Arabidopsis protein of unknown function | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:400006-400908 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~400006-400908 HTH_23 PF13384.1 g79035.t1 - 0.049 13.3 0.4 6.4 6.5 0.2 2.7 1 1 1 2 2 2 0 Homeodomain-like domain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:200775-201518 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~200775-201518 CDC45 PF02724.9 g54622.t1 - 0.032 12.2 13.4 0.033 12.2 9.3 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1724_contigs=2, transcript_loc=scaffold1724_contigs=2:18347-21389 Augustus predicted protein sequence Tomato scaffold1724_contigs=2~18347-21389 RVP_2 PF08284.6 g48762.t1 - 0.00059 19.7 0 0.0011 18.9 0 1.4 2 0 0 2 2 2 1 Retroviral aspartyl protease | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1060725-1061042 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~1060725-1061042 MAM1 PF10434.4 g387.t1 - 0.11 11.6 0 0.15 11.1 0 1.1 1 0 0 1 1 1 0 Monopolin complex protein MAM1 | Ref_seq=scaffold29_contigs=3, transcript_loc=scaffold29_contigs=3:105203-106795 Augustus predicted protein sequence Tomato scaffold29_contigs=3~105203-106795 Nha1_C PF08619.5 g63244.t1 - 0.0014 18 4.2 0.0016 17.7 2.9 1 1 0 0 1 1 1 1 Alkali metal cation/H+ antiporter Nha1 C terminus | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:6548-8467 Augustus predicted protein sequence Tomato scaffold2033_contigs=2~6548-8467 PBP_sp32 PF07222.7 g34041.t1 - 0.019 14.1 1.4 0.028 13.5 1 1.4 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:168545-169621 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~168545-169621 Fer4 PF00037.22 g11027.t1 - 0.18 11.4 1.7 0.3 10.7 1.2 1.3 1 0 0 1 1 1 0 4Fe-4S binding domain | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:3720-3953 Augustus predicted protein sequence Tomato scaffold512_contigs=2~3720-3953 UPF0146 PF03686.8 g30369.t1 - 0.12 12.1 0.1 0.15 11.8 0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:229329-229589 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~229329-229589 MIase PF02426.11 g1802.t1 - 0.12 12.2 0 0.14 11.9 0 1.3 1 1 0 1 1 1 0 Muconolactone delta-isomerase | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:61580-61813 Augustus predicted protein sequence Tomato scaffold217_contigs=3~61580-61813 WD40_alt PF14077.1 g76883.t1 - 0.035 13.7 2.4 1.5 8.5 0.1 2.8 2 0 0 2 2 2 0 Alternative WD40 repeat motif | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:190016-191019 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~190016-191019 zf-BED PF02892.10 g65707.t1 - 0.0034 17.1 0.4 0.0076 15.9 0.3 1.7 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:210649-211287 Augustus predicted protein sequence Tomato scaffold2137_contigs=9~210649-211287 Pepsin-I3 PF06394.8 g19244.t1 - 0.0063 16.1 0.1 0.013 15.1 0 1.6 1 0 0 1 1 1 1 Pepsin inhibitor-3-like repeated domain | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:213555-214169 Augustus predicted protein sequence Tomato scaffold748_contigs=11~213555-214169 DNA_pol_phi PF04931.8 g74260.t1 - 5.7 4.5 6.4 7.7 4.1 4.4 1.1 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:27230-27850 Augustus predicted protein sequence Tomato scaffold2526_contigs=3~27230-27850 c-SKI_SMAD_bind PF08782.5 g15735.t1 - 0.044 13.9 0 0.054 13.6 0 1.1 1 0 0 1 1 1 0 c-SKI Smad4 binding domain | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:73422-73751 Augustus predicted protein sequence Tomato scaffold641_contigs=2~73422-73751 FLO_LFY PF01698.11 g31329.t1 - 0.14 10.9 13.6 0.19 10.5 9.4 1.1 1 0 0 1 1 1 0 Floricaula / Leafy protein | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:532511-533713 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~532511-533713 FAR1 PF03101.10 g57242.t1 - 0.00012 22.5 0.1 0.00022 21.6 0 1.4 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:301503-303586 Augustus predicted protein sequence Tomato scaffold1829_contigs=9~301503-303586 zf-CCHC PF00098.18 g34782.t1 - 0.009 15.9 1.1 0.013 15.4 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:192126-192437 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~192126-192437 zf-CCHC_5 PF14787.1 g16643.t1 - 0.0012 18.2 3 0.0026 17.1 2.1 1.6 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:50110-51990 Augustus predicted protein sequence Tomato scaffold675_contigs=2~50110-51990 TRI9 PF08195.6 g35568.t1 - 0.0094 15.5 0.5 0.35 10.5 0 2.4 2 0 0 2 2 2 2 TRI9 protein | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:644663-645004 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~644663-645004 ODV-E18 PF10717.4 g77310.t1 - 1.1 8.7 6.9 1.4 8.4 4.8 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 | Ref_seq=scaffold2655_contigs=13, transcript_loc=scaffold2655_contigs=13:19961-20170 Augustus predicted protein sequence Tomato scaffold2655_contigs=13~19961-20170 PBP1_TM PF14812.1 g73912.t1 - 0.95 9.8 4.5 0.35 11.1 0.7 1.9 2 0 0 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:187467-188557 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~187467-188557 V_ATPase_I PF01496.14 g15732.t1 - 3.6 5.3 5.4 4.5 4.9 3.8 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:64884-65912 Augustus predicted protein sequence Tomato scaffold641_contigs=2~64884-65912 RVT_3 PF13456.1 g83809.t1 - 0.046 13.4 0 0.076 12.7 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1914033-1916649 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1914033-1916649 EF-hand_like PF09279.6 g81020.t1 - 0.036 14 0.1 0.046 13.7 0.1 1.1 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:228628-228867 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~228628-228867 IKKbetaNEMObind PF12179.3 g48435.t1 - 0.2 11.4 0.6 15 5.5 0.2 2.4 2 0 0 2 2 2 0 I-kappa-kinase-beta NEMO binding domain | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:98900-99283 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~98900-99283 ATHILA PF03078.10 g28801.t1 - 0.00031 19.4 0.1 0.0032 16.1 0 1.9 1 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:377761-378078 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~377761-378078 Keratin_assoc PF09775.4 g72118.t1 - 0.4 10.2 2.4 0.37 10.3 0.1 1.9 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:154711-155124 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~154711-155124 TFIIA PF03153.8 g74819.t1 - 7.2 6.3 9.5 10 5.9 6.6 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold2569_contigs=14, transcript_loc=scaffold2569_contigs=14:189823-193234 Augustus predicted protein sequence Tomato scaffold2569_contigs=14~189823-193234 NHR2 PF08788.6 g17958.t1 - 0.087 12.3 0 0.15 11.5 0 1.3 1 0 0 1 1 1 0 NHR2 domain like | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:38673-39275 Augustus predicted protein sequence Tomato scaffold720_contigs=9~38673-39275 PCMT PF01135.14 g62730.t1 - 0.1 12.1 0 0.11 11.9 0 1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:546973-547176 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~546973-547176 DNA_topoisoIV PF00521.15 g30976.t1 - 0.019 13.8 0.2 0.02 13.7 0.2 1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:118927-121713 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~118927-121713 Retrotrans_gag PF03732.12 g44527.t1 - 0.000053 23.2 1.1 0.00013 21.9 0.8 1.7 1 1 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:85873-86355 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~85873-86355 SR-25 PF10500.4 g48004.t1 - 0.018 14.4 7.5 0.02 14.3 5.2 1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:329287-329562 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~329287-329562 Nucleos_tra2_C PF07662.8 g51513.t1 - 0.041 13.3 0 0.063 12.7 0 1.2 1 0 0 1 1 1 0 Na+ dependent nucleoside transporter C-terminus | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:133892-136648 Augustus predicted protein sequence Tomato scaffold1616_contigs=7~133892-136648 GAPT PF11770.3 g28872.t1 - 0.044 13.4 0.3 0.058 13 0.2 1.1 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:610374-611581 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~610374-611581 UBN2 PF14223.1 g71751.t1 - 0.012 15.4 0.3 0.012 15.4 0.2 2.8 2 1 1 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:125036-126083 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~125036-126083 DUF4395 PF14340.1 g47813.t1 - 0.1 12.6 0 0.12 12.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:214501-215962 Augustus predicted protein sequence Tomato scaffold1499_contigs=18~214501-215962 DUF4164 PF13747.1 g10345.t1 - 0.023 14.8 1.7 0.023 14.8 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:9408-11832 Augustus predicted protein sequence Tomato scaffold495_contigs=2~9408-11832 Snurportin1 PF11538.3 g75008.t1 - 0.11 12.2 0.8 0.22 11.3 0.3 1.7 1 1 1 2 2 2 0 Snurportin1 | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:18218-18547 Augustus predicted protein sequence Tomato scaffold2582_contigs=20~18218-18547 Remorin_N PF03766.8 g71794.t1 - 0.092 12.5 1.4 0.17 11.7 0.9 1.5 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:28790-29412 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~28790-29412 Snapin_Pallidin PF14712.1 g83262.t1 - 0.059 13.6 0.8 0.11 12.8 0 1.8 2 0 0 2 2 2 0 Snapin/Pallidin | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:68275-68838 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~68275-68838 AAA_33 PF13671.1 g82166.t1 - 0.064 13.1 0 0.085 12.7 0 1.2 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:570047-570901 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~570047-570901 NifT PF06988.6 g13902.t1 - 0.067 12.6 0 0.12 11.8 0 1.5 1 1 0 1 1 1 0 NifT/FixU protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:518786-519055 Augustus predicted protein sequence Tomato scaffold582_contigs=8~518786-519055 FH2 PF02181.18 g5366.t1 - 0.01 14.7 0.2 0.011 14.6 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:167744-168061 Augustus predicted protein sequence Tomato scaffold325_contigs=5~167744-168061 Imm_superinfect PF14373.1 g77248.t1 - 0.35 10.5 1.3 0.61 9.7 0.9 1.4 1 0 0 1 1 1 0 Superinfection immunity protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:117931-118131 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~117931-118131 FBA_3 PF08268.7 g62976.t1 - 0.0094 15.6 0 0.015 14.9 0 1.4 1 0 0 1 1 1 1 F-box associated domain | Ref_seq=scaffold2016_contigs=10, transcript_loc=scaffold2016_contigs=10:110937-112317 Augustus predicted protein sequence Tomato scaffold2016_contigs=10~110937-112317 DRIM PF07539.7 g30234.t1 - 0.097 12 0 0.11 11.9 0 1.2 1 0 0 1 1 1 0 Down-regulated in metastasis | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:182545-182937 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~182545-182937 DUF4591 PF15261.1 g15521.t1 - 0.091 13 2.6 0.11 12.7 0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4591) | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:52544-53945 Augustus predicted protein sequence Tomato scaffold631_contigs=3~52544-53945 Cys_rich_FGFR PF00839.12 g42735.t1 - 0.065 13.1 0 0.11 12.4 0 1.3 1 0 0 1 1 1 0 Cysteine rich repeat | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:81546-82251 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~81546-82251 TPPII PF12580.3 g80320.t1 - 0.13 11.5 0 0.24 10.7 0 1.4 1 1 0 1 1 1 0 Tripeptidyl peptidase II | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:33102-35283 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~33102-35283 HTH_29 PF13551.1 g33797.t1 - 0.013 15.6 0.3 0.017 15.2 0.2 1.2 1 0 0 1 1 1 0 Winged helix-turn helix | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:40329-41160 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~40329-41160 DUF2771 PF10969.3 g47672.t1 - 0.056 12.7 0 0.082 12.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:103771-111496 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~103771-111496 SLAIN PF15301.1 g18917.t1 - 0.0014 17.8 0.2 0.0017 17.6 0.2 1.1 1 0 0 1 1 1 1 SLAIN motif-containing family | Ref_seq=scaffold737_contigs=2, transcript_loc=scaffold737_contigs=2:781-1350 Augustus predicted protein sequence Tomato scaffold737_contigs=2~781-1350 HSCB_C PF07743.8 g8011.t1 - 0.044 14.2 2.4 0.53 10.7 0.4 2.1 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:303855-304133 Augustus predicted protein sequence Tomato scaffold413_contigs=6~303855-304133 DUF3490 PF11995.3 g75624.t1 - 0.058 12.9 0.5 0.53 9.8 0.1 2 1 1 1 2 2 2 0 Domain of unknown function (DUF3490) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:115407-116051 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~115407-116051 FIVAR PF07554.8 g23694.t1 - 0.072 13.3 0 0.11 12.7 0 1.2 1 0 0 1 1 1 0 Uncharacterised Sugar-binding Domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:63249-63557 Augustus predicted protein sequence Tomato scaffold865_contigs=7~63249-63557 Herpes_DNAp_acc PF04929.7 g65670.t1 - 0.68 8.8 3.2 0.65 8.8 2.2 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:85986-86357 Augustus predicted protein sequence Tomato scaffold2136_contigs=4~85986-86357 Apolipoprotein PF01442.13 g70902.t1 - 0.031 13.8 3.2 0.055 12.9 2.2 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:537104-539759 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~537104-539759 UBN2 PF14223.1 g62816.t1 - 0.012 15.4 0.2 0.018 14.8 0.1 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:89294-89536 Augustus predicted protein sequence Tomato scaffold2008_contigs=4~89294-89536 POTRA_1 PF08478.5 g30589.t1 - 0.3 11.1 2.7 13 5.9 0.2 2.4 1 1 1 2 2 2 0 POTRA domain, FtsQ-type | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:262088-262546 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~262088-262546 SWI-SNF_Ssr4 PF08549.5 g83777.t1 - 0.17 10.1 0.7 0.17 10.1 0.5 1 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1786076-1786276 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1786076-1786276 Dscam_C PF12355.3 g56244.t1 - 2.4 8.4 9.9 3.7 7.8 6.6 1.6 1 1 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:44163-45196 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~44163-45196 DUF4219 PF13961.1 g18428.t1 - 0.001 18.4 0.1 0.0019 17.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:14596-16360 Augustus predicted protein sequence Tomato scaffold724_contigs=4~14596-16360 SH3_7 PF12914.2 g5936.t1 - 0.099 12.4 0 0.17 11.6 0 1.4 1 0 0 1 1 1 0 SH3 domain of SH3b2 type | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:177451-183458 Augustus predicted protein sequence Tomato scaffold344_contigs=14~177451-183458 GAS PF13851.1 g2232.t1 - 0.00078 18.6 4.3 0.0014 17.8 3 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:37416-38280 Augustus predicted protein sequence Tomato scaffold230_contigs=2~37416-38280 FlxA PF14282.1 g19110.t1 - 0.048 13.6 1 0.065 13.1 0.7 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:186555-188485 Augustus predicted protein sequence Tomato scaffold744_contigs=4~186555-188485 UPF0547 PF10571.4 g29810.t1 - 0.021 14.5 0.4 0.085 12.5 0.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:174886-175564 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~174886-175564 CCDC155 PF14662.1 g86258.t1 - 0.031 13.8 0.3 0.049 13.2 0.2 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold2847_contigs=1, transcript_loc=scaffold2847_contigs=1:2411-6335 Augustus predicted protein sequence Tomato scaffold2847_contigs=1~2411-6335 PT PF04886.7 g5757.t1 - 0.0007 18.8 4.6 0.32 10.3 0.3 2.1 2 0 0 2 2 2 2 PT repeat | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:82433-82871 Augustus predicted protein sequence Tomato scaffold338_contigs=10~82433-82871 DUF948 PF06103.6 g54374.t1 - 0.074 12.9 0.1 0.19 11.5 0.1 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:177436-178289 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~177436-178289 YdjO PF14169.1 g12029.t1 - 0.018 14.4 0.1 0.043 13.2 0.1 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:177801-178703 Augustus predicted protein sequence Tomato scaffold535_contigs=8~177801-178703 Exo_endo_phos PF03372.18 g86495.t1 - 0.058 13.3 0 0.058 13.3 0 1.2 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:2973-4665 Augustus predicted protein sequence Tomato scaffold2867_contigs=1~2973-4665 zf-met2 PF12907.2 g37892.t1 - 0.065 13.2 0 0.13 12.2 0 1.5 1 0 0 1 1 1 0 Zinc-binding | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:168034-169089 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~168034-169089 zf-CCHC PF00098.18 g28357.t1 - 0.013 15.4 1.8 0.024 14.5 1.3 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold998_contigs=1, transcript_loc=scaffold998_contigs=1:8100-9020 Augustus predicted protein sequence Tomato scaffold998_contigs=1~8100-9020 FYDLN_acid PF09538.5 g63817.t1 - 0.09 13.3 17.1 0.1 13.1 11.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:269387-269677 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~269387-269677 DUF1347 PF07079.6 g66442.t1 - 0.053 11.7 0.1 0.062 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:129834-130289 Augustus predicted protein sequence Tomato scaffold2162_contigs=10~129834-130289 RVT_3 PF13456.1 g57481.t1 - 0.14 11.9 0 0.2 11.4 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:216814-219595 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~216814-219595 MHCassoc_trimer PF08831.5 g32072.t1 - 0.12 12.2 1.3 0.2 11.4 0.9 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:278218-279149 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~278218-279149 Neurokinin_B PF03823.9 g14728.t1 - 0.3 10.8 3.7 11 5.8 0.1 2.5 2 0 0 2 2 2 0 Neurokinin B | Ref_seq=scaffold601_contigs=9, transcript_loc=scaffold601_contigs=9:36572-39132 Augustus predicted protein sequence Tomato scaffold601_contigs=9~36572-39132 SlyX PF04102.7 g16688.t1 - 0.24 11.8 5.6 0.42 11 1 2.7 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:8538-9597 Augustus predicted protein sequence Tomato scaffold677_contigs=5~8538-9597 JHBP PF06585.6 g23933.t1 - 0.14 10.9 0 0.16 10.8 0 1.1 1 0 0 1 1 1 0 Haemolymph juvenile hormone binding protein (JHBP) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:184694-184954 Augustus predicted protein sequence Tomato scaffold874_contigs=5~184694-184954 Reo_P9 PF06043.6 g23541.t1 - 0.072 12.1 0.1 0.081 11.9 0.1 1.1 1 0 0 1 1 1 0 Reovirus P9-like family | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:59846-60094 Augustus predicted protein sequence Tomato scaffold863_contigs=2~59846-60094 YtpI PF14007.1 g15006.t1 - 0.085 12.7 1.3 0.11 12.4 0.9 1.3 1 0 0 1 1 1 0 YtpI-like protein | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:46179-46971 Augustus predicted protein sequence Tomato scaffold616_contigs=8~46179-46971 F-box-like PF12937.2 g57431.t1 - 0.11 12.1 0.5 0.18 11.5 0 1.6 2 0 0 2 2 2 0 F-box-like | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:54552-54872 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~54552-54872 GSK-3_bind PF05350.7 g10905.t1 - 2.2 7.6 6.5 2.7 7.4 4.5 1.1 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding | Ref_seq=scaffold509_contigs=2, transcript_loc=scaffold509_contigs=2:33220-33585 Augustus predicted protein sequence Tomato scaffold509_contigs=2~33220-33585 zf-IS66 PF13005.2 g87334.t1 - 0.028 14.3 0.5 4.8 7.2 0.1 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 | Ref_seq=scaffold3008_contigs=1, transcript_loc=scaffold3008_contigs=1:1213-2106 Augustus predicted protein sequence Tomato scaffold3008_contigs=1~1213-2106 HpaP PF09483.5 g60850.t1 - 0.0097 15.8 0 0.012 15.5 0 1.1 1 0 0 1 1 1 1 Type III secretion protein (HpaP) | Ref_seq=scaffold1960_contigs=6, transcript_loc=scaffold1960_contigs=6:24984-25968 Augustus predicted protein sequence Tomato scaffold1960_contigs=6~24984-25968 Hemopexin PF00045.14 g72534.t1 - 0.089 12.5 0.4 0.22 11.2 0.3 1.7 1 0 0 1 1 1 0 Hemopexin | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:80657-84064 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~80657-84064 HSA PF07529.8 g57500.t1 - 0.022 14.5 0.2 0.033 13.9 0.2 1.2 1 0 0 1 1 1 0 HSA | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:300340-300988 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~300340-300988 Put_Phosphatase PF06888.7 g41817.t1 - 0.048 12.8 0 0.058 12.5 0 1.1 1 0 0 1 1 1 0 Putative Phosphatase | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:45419-47674 Augustus predicted protein sequence Tomato scaffold1344_contigs=2~45419-47674 Dendrin PF15498.1 g49110.t1 - 0.096 11.1 2.3 0.11 10.9 1.6 1 1 0 0 1 1 1 0 Nephrin and CD2AP-binding protein, Dendrin | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:56270-56509 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~56270-56509 DUF1816 PF08846.5 g62718.t1 - 0.023 14.3 0 0.039 13.6 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1816) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:524520-524900 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~524520-524900 Chon_Sulph_att PF06566.6 g78250.t1 - 2.3 7.7 9.7 2.7 7.5 6.7 1.2 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:658873-659355 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~658873-659355 DUF972 PF06156.8 g33510.t1 - 0.028 14.7 1.1 0.03 14.6 0.8 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:76141-76437 Augustus predicted protein sequence Tomato scaffold1132_contigs=4~76141-76437 Transposase_28 PF04195.7 g27756.t1 - 0.0026 17 0 0.0058 15.9 0 1.5 1 1 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:626951-630836 Augustus predicted protein sequence Tomato scaffold983_contigs=13~626951-630836 Sporozoite_P67 PF05642.6 g79502.t1 - 0.0014 16.6 6.1 0.0018 16.2 4.2 1.1 1 0 0 1 1 1 1 Sporozoite P67 surface antigen | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:59884-60675 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~59884-60675 IFP_35_N PF07334.8 g12522.t1 - 0.0041 17 5.9 0.4 10.6 1.1 2.6 2 0 0 2 2 2 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:151545-152354 Augustus predicted protein sequence Tomato scaffold556_contigs=11~151545-152354 Corona_NS4 PF03905.8 g87900.t1 - 0.083 12.7 0.1 0.13 12 0 1.2 1 0 0 1 1 1 0 Coronavirus non-structural protein NS4 | Ref_seq=scaffold4750_contigs=1, transcript_loc=scaffold4750_contigs=1:1-293 Augustus predicted protein sequence Tomato scaffold4750_contigs=1~1-293 Med9 PF07544.8 g40557.t1 - 0.0019 17.8 0 0.0038 16.9 0 1.5 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:70464-72422 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~70464-72422 DUF2151 PF10221.4 g50154.t1 - 0.8 7.8 8.5 1 7.4 5.9 1 1 0 0 1 1 1 0 Cell cycle and development regulator | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:31196-32015 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~31196-32015 CENP-Q PF13094.1 g49909.t1 - 1.2 9.1 6.6 1.9 8.5 4.5 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:586442-588322 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~586442-588322 DUF2457 PF10446.4 g61677.t1 - 0.00037 19.3 10.5 0.00058 18.7 7.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:68599-71933 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~68599-71933 Cytadhesin_P30 PF07271.6 g50187.t1 - 0.0005 19.4 2.1 0.0005 19.4 1.4 1.3 1 1 0 1 1 1 1 Cytadhesin P30/P32 | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:169437-169856 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~169437-169856 FH2 PF02181.18 g2373.t1 - 0.052 12.4 0 0.062 12.1 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:112309-112716 Augustus predicted protein sequence Tomato scaffold235_contigs=2~112309-112716 HDAC4_Gln PF12203.3 g6656.t1 - 7.7 6.5 8.5 13 5.7 3.4 2.4 2 0 0 2 2 2 0 Glutamine rich N terminal domain of histone deacetylase 4 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:171936-173027 Augustus predicted protein sequence Tomato scaffold380_contigs=11~171936-173027 zf-CCHC PF00098.18 g29913.t1 - 0.0031 17.3 0.3 0.005 16.7 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:258736-259955 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~258736-259955 CbiQ PF02361.11 g68317.t1 - 0.097 12.2 0 0.14 11.7 0 1.1 1 0 0 1 1 1 0 Cobalt transport protein | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:36244-36925 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~36244-36925 Pox_RNA_Pol_19 PF05320.7 g55507.t1 - 0.28 10.9 1.9 0.35 10.6 1.3 1.2 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:457999-458304 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~457999-458304 MRI PF15325.1 g35392.t1 - 6.7 7.7 9.3 0.4 11.6 1.7 2.3 2 1 0 2 2 2 0 Modulator of retrovirus infection | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:290272-292105 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~290272-292105 DUF977 PF06163.6 g13485.t1 - 0.022 14.5 0.1 0.027 14.2 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:65884-66324 Augustus predicted protein sequence Tomato scaffold576_contigs=15~65884-66324 HALZ PF02183.13 g14374.t1 - 0.06 13 0.2 0.13 12 0.2 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:93181-93600 Augustus predicted protein sequence Tomato scaffold594_contigs=19~93181-93600 DUF479 PF04336.7 g43054.t1 - 0.3 11.2 2.6 0.67 10 1.8 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF479 | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:266830-267300 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~266830-267300 NOA36 PF06524.7 g28938.t1 - 0.0088 15.3 11.6 0.013 14.7 8.1 1.2 1 0 0 1 1 1 1 NOA36 protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:874212-874868 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~874212-874868 Mak10 PF04112.8 g68370.t1 - 0.0032 16.7 0.4 2.4 7.3 0 3.1 3 1 1 4 4 4 2 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:190071-192177 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~190071-192177 Rrn6 PF10214.4 g21075.t1 - 1.6 6.6 6.4 1.8 6.5 4.4 1 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:221435-221734 Augustus predicted protein sequence Tomato scaffold792_contigs=3~221435-221734 DUF3716 PF12511.3 g87566.t1 - 0.00056 19.4 1.3 0.86 9.2 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3716) | Ref_seq=scaffold3319_contigs=1, transcript_loc=scaffold3319_contigs=1:347-1185 Augustus predicted protein sequence Tomato scaffold3319_contigs=1~347-1185 zf-RVT PF13966.1 g4086.t1 - 0.068 13.4 0.3 0.11 12.8 0.2 1.5 1 1 0 1 1 1 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:23959-24350 Augustus predicted protein sequence Tomato scaffold291_contigs=11~23959-24350 ICAP-1_inte_bdg PF10480.4 g78868.t1 - 0.059 13.1 1.5 0.066 12.9 1.1 1 1 0 0 1 1 1 0 Beta-1 integrin binding protein | Ref_seq=scaffold2679_contigs=24, transcript_loc=scaffold2679_contigs=24:392137-392391 Augustus predicted protein sequence Tomato scaffold2679_contigs=24~392137-392391 PBP_sp32 PF07222.7 g74356.t1 - 0.22 10.6 2.8 0.33 10 1.9 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:126925-127710 Augustus predicted protein sequence Tomato scaffold2538_contigs=14~126925-127710 Retrotrans_gag PF03732.12 g27234.t1 - 0.0029 17.6 0.1 0.0039 17.2 0 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:106105-106590 Augustus predicted protein sequence Tomato scaffold974_contigs=15~106105-106590 FH2 PF02181.18 g62528.t1 - 0.032 13.1 0 0.041 12.7 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:11078-13991 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~11078-13991 DUF1843 PF08898.5 g17994.t1 - 0.13 12.3 0.3 0.19 11.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:139388-139783 Augustus predicted protein sequence Tomato scaffold720_contigs=9~139388-139783 Tryp_alpha_amyl PF00234.17 g37212.t1 - 0.094 12.9 0.1 0.14 12.4 0.1 1.2 1 0 0 1 1 1 0 Protease inhibitor/seed storage/LTP family | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:30376-30813 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~30376-30813 DUF756 PF05506.7 g31882.t1 - 0.086 13.3 0 16 6 0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF756) | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:4505-6795 Augustus predicted protein sequence Tomato scaffold1092_contigs=11~4505-6795 Fic PF02661.13 g74484.t1 - 0.096 13.3 0.1 20 5.9 0 2.3 1 1 1 2 2 2 0 Fic/DOC family | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:1-1099 Augustus predicted protein sequence Tomato scaffold2555_contigs=31~1-1099 IBV_3A PF03617.8 g39870.t1 - 0.0052 16.5 1.5 0.0079 15.9 1 1.4 1 1 0 1 1 1 1 IBV 3A protein | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:184390-184623 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~184390-184623 Radial_spoke_3 PF06098.6 g66891.t1 - 0.23 10.4 5.5 0.28 10.1 3.8 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:126955-127356 Augustus predicted protein sequence Tomato scaffold2172_contigs=4~126955-127356 NAM-associated PF14303.1 g2219.t1 - 0.03 14.6 7.9 0.035 14.4 5.5 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold229_contigs=4, transcript_loc=scaffold229_contigs=4:59524-60065 Augustus predicted protein sequence Tomato scaffold229_contigs=4~59524-60065 Pdase_C33_assoc PF14756.1 g80542.t1 - 0.092 12.4 0 0.12 12 0 1.2 1 0 0 1 1 1 0 Peptidase_C33-associated domain | Ref_seq=scaffold2713_contigs=17, transcript_loc=scaffold2713_contigs=17:46534-46989 Augustus predicted protein sequence Tomato scaffold2713_contigs=17~46534-46989 FAR1 PF03101.10 g79399.t1 - 0.00005 23.7 0.5 0.0065 16.9 0.1 2.1 2 0 0 2 2 2 2 FAR1 DNA-binding domain | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:68663-68983 Augustus predicted protein sequence Tomato scaffold2694_contigs=28~68663-68983 DUF2681 PF10883.3 g38745.t1 - 0.58 10.3 3.6 0.71 10.1 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:194817-195047 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~194817-195047 CAF-1_p150 PF11600.3 g24552.t1 - 0.0000086 25.2 18.4 0.0000087 25.2 12.8 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:46569-47099 Augustus predicted protein sequence Tomato scaffold888_contigs=4~46569-47099 NAP PF00956.13 g31395.t1 - 0.63 9.1 7.9 0.047 12.8 1.1 1.9 1 1 1 2 2 2 0 Nucleosome assembly protein (NAP) | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:168931-169317 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~168931-169317 Peptidase_S46 PF10459.4 g55682.t1 - 0.036 12.4 7.4 0.038 12.4 5.1 1.1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold1763_contigs=6, transcript_loc=scaffold1763_contigs=6:20055-20621 Augustus predicted protein sequence Tomato scaffold1763_contigs=6~20055-20621 MGS PF02142.17 g36688.t1 - 0.068 13.1 0 0.085 12.7 0 1.1 1 0 0 1 1 1 0 MGS-like domain | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:163762-165057 Augustus predicted protein sequence Tomato scaffold1207_contigs=28~163762-165057 Pox_A_type_inc PF04508.7 g54357.t1 - 0.0033 17 0.3 0.21 11.4 0.1 2.9 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:97148-97489 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~97148-97489 IFP_35_N PF07334.8 g1836.t1 - 0.21 11.5 4.1 0.11 12.4 1.3 1.7 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:215157-215477 Augustus predicted protein sequence Tomato scaffold217_contigs=3~215157-215477 RVP_2 PF08284.6 g65950.t1 - 0.000051 23.2 0 0.000076 22.6 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:242313-242777 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~242313-242777 NIL PF09383.5 g53968.t1 - 0.031 13.8 0 0.045 13.3 0 1.3 1 0 0 1 1 1 0 NIL domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:121395-122762 Augustus predicted protein sequence Tomato scaffold1709_contigs=7~121395-122762 HCV_core PF01542.13 g71013.t1 - 0.027 14.8 1.9 0.035 14.5 0.3 1.7 1 1 1 2 2 2 0 Hepatitis C virus core protein | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:444596-444820 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~444596-444820 LmjF365940-deam PF14421.1 g72457.t1 - 0.00073 18.9 0.2 0.00092 18.6 0.1 1 1 0 0 1 1 1 1 A distinct subfamily of CDD/CDA-like deaminases | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:149423-149764 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~149423-149764 Pap_E4 PF02711.9 g14720.t1 - 0.067 14 3.2 10 7 0.1 2.9 1 1 2 3 3 3 0 E4 protein | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:296238-297048 Augustus predicted protein sequence Tomato scaffold599_contigs=8~296238-297048 zf-RVT PF13966.1 g60344.t1 - 0.00029 21 0.3 0.00039 20.6 0.2 1.2 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:38730-38963 Augustus predicted protein sequence Tomato scaffold1949_contigs=5~38730-38963 Delta_lysin PF05372.6 g82443.t1 - 0.12 11.7 0 0.24 10.7 0 1.4 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:67111-72171 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~67111-72171 PMEI PF04043.10 g49926.t1 - 0.000000063 32.6 3.4 0.00000007 32.5 2.3 1 1 0 0 1 1 1 1 Plant invertase/pectin methylesterase inhibitor | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:633238-633726 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~633238-633726 DUF3159 PF11361.3 g57354.t1 - 0.018 14.5 1.1 0.023 14.1 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:305462-307032 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~305462-307032 rve_3 PF13683.1 g65228.t1 - 0.063 12.8 0 0.11 12 0 1.4 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:412122-413520 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~412122-413520 NAM-associated PF14303.1 g68139.t1 - 0.000059 23.4 3.8 0.000073 23.1 2.7 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:79693-80142 Augustus predicted protein sequence Tomato scaffold2207_contigs=13~79693-80142 AMP-binding_C PF13193.1 g87898.t1 - 0.0039 18.1 0 0.0052 17.7 0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain | Ref_seq=scaffold4746_contigs=1, transcript_loc=scaffold4746_contigs=1:24-539 Augustus predicted protein sequence Tomato scaffold4746_contigs=1~24-539 DUF3446 PF11928.3 g82680.t1 - 3.1 8 10.1 5.8 7.1 5.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3446) | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:48636-51456 Augustus predicted protein sequence Tomato scaffold2747_contigs=3~48636-51456 DUF116 PF01976.12 g84948.t1 - 0.12 11.7 0.5 0.17 11.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF116 | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:75116-75463 Augustus predicted protein sequence Tomato scaffold2785_contigs=1~75116-75463 Phage_NinH PF06322.6 g33666.t1 - 0.061 12.9 0.6 3.1 7.5 0 2.3 1 1 1 2 2 2 0 Phage NinH protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:426945-427535 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~426945-427535 UBN2 PF14223.1 g9314.t1 - 0.012 15.3 6.5 0.033 13.9 3 2.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:4388-5538 Augustus predicted protein sequence Tomato scaffold453_contigs=2~4388-5538 Flu_B_M2 PF04772.7 g10053.t1 - 0.14 12.2 2.1 0.29 11.2 0.1 2 2 0 0 2 2 2 0 Influenza B matrix protein 2 (BM2) | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:17403-17750 Augustus predicted protein sequence Tomato scaffold482_contigs=7~17403-17750 PPDK_N PF01326.14 g62956.t1 - 0.032 13.2 0.3 0.038 13 0.2 1.2 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:170708-171456 Augustus predicted protein sequence Tomato scaffold2015_contigs=7~170708-171456 DUF695 PF05117.7 g48887.t1 - 0.00018 21.4 2 0.0031 17.4 0.2 2.9 2 1 1 3 3 3 1 Family of unknown function (DUF695) | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:124316-125350 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~124316-125350 DUF2651 PF10852.3 g28183.t1 - 0.0019 18.5 0 0.82 10 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2651) | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:111-1678 Augustus predicted protein sequence Tomato scaffold993_contigs=5~111-1678 ATHILA PF03078.10 g41647.t1 - 0.0024 16.5 0.2 0.0032 16.1 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:61782-62327 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~61782-62327 IFP_35_N PF07334.8 g36212.t1 - 0.21 11.5 6.8 0.21 11.5 0.1 3.4 2 1 1 3 3 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:202043-202921 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~202043-202921 DUF2130 PF09903.4 g78992.t1 - 0.009 14.7 0 0.015 14 0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2130) | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:84925-85440 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~84925-85440 RVT_3 PF13456.1 g50120.t1 - 0.097 12.4 0.5 0.44 10.3 0.1 1.9 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:332688-333254 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~332688-333254 Phage_integrase PF00589.17 g87468.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:2251-2595 Augustus predicted protein sequence Tomato scaffold3123_contigs=1~2251-2595 zf-CCHC PF00098.18 g71175.t1 - 0.0000037 26.6 3.7 0.0000075 25.6 2.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:104289-108766 Augustus predicted protein sequence Tomato scaffold2357_contigs=7~104289-108766 Prolamin_like PF05617.6 g29068.t1 - 0.01 15.9 1.8 0.017 15.2 1.2 1.5 1 1 0 1 1 1 0 Prolamin-like | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:469154-469444 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~469154-469444 ATHILA PF03078.10 g75059.t1 - 0.000000013 33.8 0.1 0.000000019 33.3 0.1 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:56544-60993 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~56544-60993 Retrotrans_gag PF03732.12 g72754.t1 - 0.019 15 0 0.055 13.5 0 1.7 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2424_contigs=6, transcript_loc=scaffold2424_contigs=6:6641-14353 Augustus predicted protein sequence Tomato scaffold2424_contigs=6~6641-14353 BEX PF04538.7 g10947.t1 - 1.6 8.9 6 2.7 8.2 4.1 1.3 1 0 0 1 1 1 0 Brain expressed X-linked like family | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:16222-16710 Augustus predicted protein sequence Tomato scaffold510_contigs=5~16222-16710 DUF4219 PF13961.1 g37675.t1 - 0.0022 17.3 0 0.0036 16.6 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:4863-5189 Augustus predicted protein sequence Tomato scaffold1233_contigs=6~4863-5189 HSBP1 PF06825.7 g24521.t1 - 0.003 17.1 0 0.3 10.6 0.5 2.3 1 1 1 2 2 2 1 Heat shock factor binding protein 1 | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:15994-16359 Augustus predicted protein sequence Tomato scaffold886_contigs=4~15994-16359 Toxin_17 PF08086.6 g15504.t1 - 0.06 13.4 0.3 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Ergtoxin family | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:9245-10303 Augustus predicted protein sequence Tomato scaffold631_contigs=3~9245-10303 DUF605 PF04652.11 g19071.t1 - 3.5 6.9 21.8 4.3 6.6 15.1 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:18772-20043 Augustus predicted protein sequence Tomato scaffold744_contigs=4~18772-20043 Amidase_2 PF01510.20 g9238.t1 - 0.011 15.8 0 0.02 14.9 0 1.4 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase | Ref_seq=scaffold450_contigs=9, transcript_loc=scaffold450_contigs=9:137348-138822 Augustus predicted protein sequence Tomato scaffold450_contigs=9~137348-138822 DUF4172 PF13776.1 g21203.t1 - 0.034 14.2 0.1 0.07 13.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:83937-84703 Augustus predicted protein sequence Tomato scaffold795_contigs=8~83937-84703 TEP1_N PF05386.6 g75804.t1 - 0.071 12.5 0 0.19 11.2 0 1.7 1 0 0 1 1 1 0 TEP1 N-terminal domain | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:66656-68601 Augustus predicted protein sequence Tomato scaffold2611_contigs=18~66656-68601 GRP PF07172.6 g31231.t1 - 0.0026 18.2 9.7 0.0033 17.8 6.7 1.2 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:141457-141684 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~141457-141684 Pribosyl_synth PF14572.1 g33005.t1 - 0.083 12.6 0 0.099 12.3 0 1.1 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:1-311 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~1-311 SymE_toxin PF08845.5 g21577.t1 - 0.016 15 0 0.022 14.5 0 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:86202-86582 Augustus predicted protein sequence Tomato scaffold801_contigs=2~86202-86582 CENP-F_leu_zip PF10473.4 g65761.t1 - 0.00047 20 1.7 0.00047 20 1.2 1.6 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2139_contigs=8, transcript_loc=scaffold2139_contigs=8:5994-10863 Augustus predicted protein sequence Tomato scaffold2139_contigs=8~5994-10863 ATHILA PF03078.10 g47376.t1 - 0.00081 18 0.1 0.00093 17.8 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:315770-316236 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~315770-316236 DUF3136 PF11334.3 g5518.t1 - 0.075 12.4 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:142348-143460 Augustus predicted protein sequence Tomato scaffold330_contigs=6~142348-143460 FTA4 PF13093.1 g33558.t1 - 0.014 14.8 0 0.016 14.6 0 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:125056-125460 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~125056-125460 Prp31_C PF09785.4 g15834.t1 - 0.053 13.9 0 0.086 13.2 0 1.3 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:113242-113865 Augustus predicted protein sequence Tomato scaffold645_contigs=7~113242-113865 ZZ PF00569.12 g83508.t1 - 0.055 13 0.6 0.087 12.3 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, ZZ type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:753341-753679 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~753341-753679 DUF2759 PF10958.3 g51858.t1 - 0.12 11.9 0.9 0.23 11 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2759) | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:110215-111224 Augustus predicted protein sequence Tomato scaffold1625_contigs=4~110215-111224 PsbJ PF01788.12 g4594.t1 - 0.12 11.9 1.7 0.24 10.9 1.2 1.5 1 0 0 1 1 1 0 PsbJ | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:43789-44130 Augustus predicted protein sequence Tomato scaffold304_contigs=1~43789-44130 DUF2079 PF09852.4 g5853.t1 - 0.032 12.9 0.1 0.039 12.6 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) | Ref_seq=scaffold341_contigs=14, transcript_loc=scaffold341_contigs=14:133748-135451 Augustus predicted protein sequence Tomato scaffold341_contigs=14~133748-135451 DUF4357 PF14267.1 g34909.t1 - 0.49 10 6.5 1.4 8.5 0.1 3 3 0 0 3 3 3 0 Domain of unknown function (DUF4357) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:176403-177326 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~176403-177326 Surfac_D-trimer PF09006.6 g45665.t1 - 0.1 12.3 0 22 4.8 0 2.6 2 0 0 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:293114-293893 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~293114-293893 CENP-F_leu_zip PF10473.4 g13505.t1 - 0.00098 18.9 6.8 0.0011 18.8 4.7 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:121298-121701 Augustus predicted protein sequence Tomato scaffold576_contigs=15~121298-121701 DUF3893 PF13032.1 g81649.t1 - 0.077 13.1 0.3 0.13 12.3 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:386422-386898 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~386422-386898 Aldose_epim PF01263.15 g10812.t1 - 0.096 11.7 0 0.14 11.1 0 1.2 1 0 0 1 1 1 0 Aldose 1-epimerase | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:186991-187701 Augustus predicted protein sequence Tomato scaffold507_contigs=4~186991-187701 PAT1 PF09770.4 g42025.t1 - 2.5 6.2 13.5 2.8 6 9.4 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:237960-238622 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~237960-238622 DUF869 PF05911.6 g50389.t1 - 0.0071 14.6 7.3 0.0095 14.2 5.1 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:287179-287463 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~287179-287463 p12I PF12233.3 g77616.t1 - 0.43 10.8 12 0.36 11.1 7.3 1.6 1 1 0 1 1 1 0 Human adult T cell leukemia/lymphoma virus protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:178428-178853 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~178428-178853 MBOAT_2 PF13813.1 g14804.t1 - 0.027 14.5 1.3 0.037 14 0.9 1.2 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family | Ref_seq=scaffold606_contigs=3, transcript_loc=scaffold606_contigs=3:8194-9920 Augustus predicted protein sequence Tomato scaffold606_contigs=3~8194-9920 ATHILA PF03078.10 g33565.t1 - 0.000000026 32.9 0.8 0.000025 23 0.3 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:138901-139431 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~138901-139431 zf-A20 PF01754.11 g32423.t1 - 0.46 10.1 2.6 16 5.1 0.7 2.4 2 0 0 2 2 2 0 A20-like zinc finger | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:190084-190420 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~190084-190420 IDO PF01231.13 g2383.t1 - 0.078 11.3 0 0.086 11.2 0 1 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:2775-2987 Augustus predicted protein sequence Tomato scaffold236_contigs=3~2775-2987 DUF724 PF05266.9 g23899.t1 - 0.044 13.4 2.3 0.059 12.9 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:35254-35586 Augustus predicted protein sequence Tomato scaffold874_contigs=5~35254-35586 FadA PF09403.5 g26700.t1 - 0.0067 16.4 4.4 0.0083 16.1 3.1 1.1 1 0 0 1 1 1 1 Adhesion protein FadA | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:27351-27740 Augustus predicted protein sequence Tomato scaffold958_contigs=5~27351-27740 SlyX PF04102.7 g47323.t1 - 0.087 13.2 1.3 0.46 10.8 0.3 2.2 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:158465-158866 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~158465-158866 ComC PF03047.9 g72710.t1 - 0.32 10.4 1.6 0.42 10 0.3 1.9 1 1 0 1 1 1 0 COMC family | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:494118-494411 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~494118-494411 DUF2215 PF10225.4 g55025.t1 - 0.21 11 1.6 0.33 10.3 1.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:6462-8513 Augustus predicted protein sequence Tomato scaffold1735_contigs=2~6462-8513 Atrophin-1 PF03154.10 g46519.t1 - 5.5 4.9 13.3 0.016 13.3 2.8 1.4 2 0 0 2 2 2 0 Atrophin-1 family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:327613-332658 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~327613-332658 PBP_sp32 PF07222.7 g84672.t1 - 0.16 11.1 3.1 0.21 10.7 2.1 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:13482-16450 Augustus predicted protein sequence Tomato scaffold2777_contigs=1~13482-16450 DUF1138 PF06592.8 g59736.t1 - 0.061 13.3 0.4 0.1 12.6 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1138) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:144544-145005 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~144544-145005 ATHILA PF03078.10 g14521.t1 - 0.0057 15.3 0.3 0.0071 14.9 0.2 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:65629-66956 Augustus predicted protein sequence Tomato scaffold595_contigs=2~65629-66956 Pox_H7 PF04787.7 g7770.t1 - 0.087 12.6 0 0.098 12.4 0 1.1 1 0 0 1 1 1 0 Late protein H7 | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:290374-290574 Augustus predicted protein sequence Tomato scaffold406_contigs=8~290374-290574 RESP18 PF14948.1 g80634.t1 - 0.11 12.6 0.3 0.13 12.2 0.2 1.1 1 0 0 1 1 1 0 RESP18 domain | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:106321-107269 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~106321-107269 Got1 PF04178.7 g41146.t1 - 0.0083 16.2 0.3 0.01 15.9 0.2 1.1 1 0 0 1 1 1 1 Got1/Sft2-like family | Ref_seq=scaffold1325_contigs=9, transcript_loc=scaffold1325_contigs=9:127508-127792 Augustus predicted protein sequence Tomato scaffold1325_contigs=9~127508-127792 UPF0370 PF13980.1 g5876.t1 - 0.0029 17.3 0.2 0.0058 16.4 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0370) | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:41690-44759 Augustus predicted protein sequence Tomato scaffold343_contigs=1~41690-44759 CRISPR_assoc PF08798.6 g16582.t1 - 0.049 13.3 0.1 0.059 13.1 0 1.2 1 0 0 1 1 1 0 CRISPR associated protein | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:140187-140795 Augustus predicted protein sequence Tomato scaffold674_contigs=5~140187-140795 Kinetochor_Ybp2 PF08568.5 g81327.t1 - 0.059 11.6 0.1 0.091 10.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family, YAP/Alf4/glomulin | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:345366-346223 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~345366-346223 DUF3054 PF11255.3 g40850.t1 - 0.14 12 0 0.16 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3054) | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:551797-552081 Augustus predicted protein sequence Tomato scaffold1310_contigs=21~551797-552081 CBF PF03914.12 g39566.t1 - 1.3 8.4 3.6 28 4.1 2.2 2.6 1 1 0 1 1 1 0 CBF/Mak21 family | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:291178-291663 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~291178-291663 Prp19_bind PF06991.6 g85619.t1 - 0.036 13.3 1.1 0.047 12.9 0.8 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:10302-14660 Augustus predicted protein sequence Tomato scaffold2812_contigs=1~10302-14660 DUF4170 PF13773.1 g14370.t1 - 0.01 15.7 0 0.017 14.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:79627-80001 Augustus predicted protein sequence Tomato scaffold594_contigs=19~79627-80001 PulS_OutS PF09691.5 g22443.t1 - 0.058 13.3 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial chaperone lipoprotein (PulS_OutS) | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:60076-61894 Augustus predicted protein sequence Tomato scaffold830_contigs=3~60076-61894 G-7-MTase PF12803.2 g4288.t1 - 0.05 12.7 0.1 0.051 12.7 0.1 1.1 1 0 0 1 1 1 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:21357-21674 Augustus predicted protein sequence Tomato scaffold296_contigs=6~21357-21674 Delta_lysin PF05372.6 g39930.t1 - 0.26 10.6 8.2 3.5 7 0.7 2.6 2 0 0 2 2 2 0 Delta lysin family | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:54831-56330 Augustus predicted protein sequence Tomato scaffold1283_contigs=15~54831-56330 CoA_binding_3 PF13727.1 g18121.t1 - 0.07 12.9 0.3 0.068 12.9 0.2 1.1 1 0 0 1 1 1 0 CoA-binding domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:481395-481613 Augustus predicted protein sequence Tomato scaffold720_contigs=9~481395-481613 DUF1899 PF08953.6 g1424.t1 - 0.082 12.5 0 0.13 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1899) | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:27559-28483 Augustus predicted protein sequence Tomato scaffold202_contigs=3~27559-28483 DUF1425 PF07233.7 g4389.t1 - 0.0058 16.1 0 0.0094 15.4 0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1425) | Ref_seq=scaffold299_contigs=2, transcript_loc=scaffold299_contigs=2:11398-13896 Augustus predicted protein sequence Tomato scaffold299_contigs=2~11398-13896 TrbE PF11100.3 g35917.t1 - 0.068 13 0.5 0.12 12.2 0.3 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:95373-97221 Augustus predicted protein sequence Tomato scaffold1185_contigs=5~95373-97221 EMP24_GP25L PF01105.19 g68519.t1 - 0.12 12.1 0 0.18 11.5 0 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold2216_contigs=4, transcript_loc=scaffold2216_contigs=4:7709-8756 Augustus predicted protein sequence Tomato scaffold2216_contigs=4~7709-8756 LAT PF15234.1 g62678.t1 - 0.038 13.4 0.3 0.049 13.1 0.2 1.1 1 0 0 1 1 1 0 Linker for activation of T-cells | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:329391-329885 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~329391-329885 Serpulina_VSP PF05540.6 g14653.t1 - 0.1 11.3 0 0.13 11 0 1.1 1 0 0 1 1 1 0 Serpulina hyodysenteriae variable surface protein | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:75547-75957 Augustus predicted protein sequence Tomato scaffold599_contigs=8~75547-75957 Myosin_tail_1 PF01576.14 g2386.t1 - 0.0053 14.5 3.4 0.0062 14.3 2.3 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:7833-8368 Augustus predicted protein sequence Tomato scaffold236_contigs=3~7833-8368 Remorin_C PF03763.8 g29396.t1 - 0.91 9 20.9 1.1 8.7 14.5 1.2 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:52422-52631 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~52422-52631 DUF573 PF04504.9 g39701.t1 - 0.0000011 28.8 0.2 0.000002 27.9 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF573 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:36530-37199 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~36530-37199 ATG19_autophagy PF12744.2 g62742.t1 - 0.029 13.6 2 0.038 13.2 0.1 1.8 1 1 1 2 2 2 0 Autophagy protein Atg19, Atg8-binding | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:613943-614458 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~613943-614458 Myb_DNA-bind_5 PF13873.1 g86552.t1 - 0.13 12.1 0 0.21 11.5 0 1.3 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold2872_contigs=1, transcript_loc=scaffold2872_contigs=1:11633-11863 Augustus predicted protein sequence Tomato scaffold2872_contigs=1~11633-11863 RVT_3 PF13456.1 g40482.t1 - 0.000024 24 0.4 0.00024 20.8 0.3 2.1 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:62221-62830 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~62221-62830 FNIP_M PF14637.1 g29803.t1 - 0.038 13.5 0.4 0.07 12.6 0.1 1.6 2 0 0 2 2 2 0 Folliculin-interacting protein middle domain | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:129782-131284 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~129782-131284 UPF0731 PF14982.1 g1658.t1 - 0.021 14.7 0.9 0.07 13 0.3 2.1 2 0 0 2 2 2 0 UPF0731 family | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:78613-82065 Augustus predicted protein sequence Tomato scaffold213_contigs=5~78613-82065 HC2 PF07382.6 g50173.t1 - 0.00055 19.8 1.1 0.00063 19.6 0.8 1 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:111726-112034 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~111726-112034 DUF2403 PF10290.4 g42368.t1 - 0.063 13.4 0.4 4.3 7.5 0 3 4 0 0 4 4 4 0 Glycine-rich protein domain (DUF2403) | Ref_seq=scaffold1356_contigs=2, transcript_loc=scaffold1356_contigs=2:11413-14549 Augustus predicted protein sequence Tomato scaffold1356_contigs=2~11413-14549 DUF3357 PF11837.3 g2848.t1 - 0.0097 15.7 1.2 22 4.9 0.1 3.5 2 2 2 4 4 4 2 Domain of unknown function (DUF3357) | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:326757-327389 Augustus predicted protein sequence Tomato scaffold255_contigs=10~326757-327389 Ebola_NP PF05505.7 g6083.t1 - 0.13 10.2 0 0.15 10.1 0 1 1 0 0 1 1 1 0 Ebola nucleoprotein | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:54619-55867 Augustus predicted protein sequence Tomato scaffold350_contigs=4~54619-55867 CDC45 PF02724.9 g45396.t1 - 0.092 10.7 14.9 0.12 10.3 10.3 1.4 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:76062-77018 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~76062-77018 Med12 PF09497.5 g84157.t1 - 0.15 12 0.3 0.66 9.9 0.2 2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:211665-212096 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~211665-212096 zf-BED PF02892.10 g59531.t1 - 0.0083 15.8 2.4 0.0083 15.8 1.7 2.1 2 1 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:124336-126784 Augustus predicted protein sequence Tomato scaffold1926_contigs=8~124336-126784 F-box PF00646.28 g287.t1 - 0.088 12.4 0 0.19 11.4 0 1.6 1 0 0 1 1 1 0 F-box domain | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:82470-82754 Augustus predicted protein sequence Tomato scaffold17_contigs=4~82470-82754 MULE PF10551.4 g40421.t1 - 0.00072 19.6 0 0.0016 18.5 0 1.6 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:129735-132481 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~129735-132481 Minor_capsid_3 PF12691.2 g52252.t1 - 0.088 12.4 0 0.13 11.9 0 1.2 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold1636_contigs=5, transcript_loc=scaffold1636_contigs=5:4249-5567 Augustus predicted protein sequence Tomato scaffold1636_contigs=5~4249-5567 zf-RING_2 PF13639.1 g8687.t1 - 9.9E-013 47.7 14.4 0.0000044 26.4 2.3 2.7 2 0 0 2 2 2 2 Ring finger domain | Ref_seq=scaffold430_contigs=3, transcript_loc=scaffold430_contigs=3:37956-39023 Augustus predicted protein sequence Tomato scaffold430_contigs=3~37956-39023 Vps51 PF08700.6 g72151.t1 - 0.043 13.6 0.2 0.073 12.9 0.2 1.4 1 0 0 1 1 1 0 Vps51/Vps67 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:381482-381976 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~381482-381976 FH2 PF02181.18 g71661.t1 - 0.055 12.3 0 0.066 12 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:19533-19862 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~19533-19862 DUF4276 PF14103.1 g59255.t1 - 0.12 12.1 0 0.12 12.1 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:73078-73293 Augustus predicted protein sequence Tomato scaffold1904_contigs=8~73078-73293 Con-6 PF10346.4 g73894.t1 - 0.12 11.7 0 0.24 10.8 0 1.5 1 0 0 1 1 1 0 Conidiation protein 6 | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:116963-117525 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~116963-117525 TruB-C_2 PF09157.6 g83522.t1 - 0.11 12.4 0.2 0.2 11.5 0.1 1.4 1 1 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:795444-795680 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~795444-795680 CAF-1_p150 PF11600.3 g19165.t1 - 0.0049 16.2 20.4 0.0049 16.2 14.2 2.8 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:148990-151070 Augustus predicted protein sequence Tomato scaffold746_contigs=6~148990-151070 RVP_2 PF08284.6 g5953.t1 - 0.0053 16.6 0 0.0065 16.4 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:248241-248660 Augustus predicted protein sequence Tomato scaffold344_contigs=14~248241-248660 DUF688 PF05097.7 g8448.t1 - 0.077 11.9 2.1 0.082 11.8 1.5 1 1 0 0 1 1 1 0 Protein of unknown function (DUF688) | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:41715-41942 Augustus predicted protein sequence Tomato scaffold427_contigs=11~41715-41942 Nucleoporin_C PF03177.9 g37210.t1 - 0.026 13 0 0.028 12.9 0 1.1 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:26110-27362 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~26110-27362 PTS_EIIA_2 PF00359.17 g6644.t1 - 0.064 12.9 0.1 0.082 12.6 0.1 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:140604-140885 Augustus predicted protein sequence Tomato scaffold380_contigs=11~140604-140885 Tetradecapep PF08187.6 g32748.t1 - 0.12 12.2 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 Myoactive tetradecapeptides family | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:955429-955680 Augustus predicted protein sequence Tomato scaffold1108_contigs=23~955429-955680 GcrA PF07750.6 g32759.t1 - 0.0034 17.6 1 1.1 9.4 0.1 2.1 1 1 1 2 2 2 2 GcrA cell cycle regulator | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1009432-1009875 Augustus predicted protein sequence Tomato scaffold1108_contigs=23~1009432-1009875 zf-CCHC PF00098.18 g70609.t1 - 0.0002 21.1 3.2 0.0003 20.5 2.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:180223-180585 Augustus predicted protein sequence Tomato scaffold2343_contigs=14~180223-180585 YL1 PF05764.8 g44826.t1 - 0.71 9.4 5.1 0.85 9.1 3.5 1.1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:133999-138238 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~133999-138238 Daxx PF03344.10 g25619.t1 - 0.01 14.3 23.7 0.013 13.9 16.4 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:10782-11954 Augustus predicted protein sequence Tomato scaffold930_contigs=4~10782-11954 FliJ PF02050.11 g24017.t1 - 0.0011 19 4.9 0.0012 18.8 3.4 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:127453-127707 Augustus predicted protein sequence Tomato scaffold875_contigs=10~127453-127707 UBN2 PF14223.1 g55361.t1 - 0.0000043 26.5 0.2 0.00029 20.5 0 2.9 2 1 1 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:78234-79792 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~78234-79792 TraH_2 PF06871.6 g67748.t1 - 0.093 12.1 0 0.1 12 0 1.1 1 0 0 1 1 1 0 TraH_2 | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:4747-5097 Augustus predicted protein sequence Tomato scaffold2189_contigs=3~4747-5097 Pox_G7 PF05503.7 g83565.t1 - 0.054 12 0.1 0.058 12 0.1 1 1 0 0 1 1 1 0 Poxvirus G7-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:958978-959334 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~958978-959334 Rootletin PF15035.1 g29415.t1 - 0.013 15.5 1.6 0.013 15.5 1.1 1.7 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:111056-112776 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~111056-112776 IFP_35_N PF07334.8 g81024.t1 - 0.012 15.6 3 0.028 14.4 0.7 2.3 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:239636-240979 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~239636-240979 AhpC-TSA PF00578.16 g36064.t1 - 0.11 12.1 0 30 4.3 0 2.8 3 0 0 3 3 3 0 AhpC/TSA family | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:227926-231615 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~227926-231615 Porphobil_deam PF01379.15 g64726.t1 - 0.15 10.9 0 0.17 10.8 0 1.1 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:78961-79227 Augustus predicted protein sequence Tomato scaffold2090_contigs=6~78961-79227 DOMON PF03351.12 g42432.t1 - 0.078 12.9 0 0.14 12.1 0 1.4 1 0 0 1 1 1 0 DOMON domain | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:408881-409246 Augustus predicted protein sequence Tomato scaffold1357_contigs=25~408881-409246 SpvB PF03534.8 g37744.t1 - 0.14 11.1 0 0.16 10.9 0 1.1 1 0 0 1 1 1 0 Salmonella virulence plasmid 65kDa B protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:168553-170728 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~168553-170728 GAS2 PF02187.12 g55655.t1 - 0.15 11.8 0.3 0.23 11.2 0.2 1.2 1 0 0 1 1 1 0 Growth-Arrest-Specific Protein 2 Domain | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:91709-93850 Augustus predicted protein sequence Tomato scaffold1759_contigs=3~91709-93850 Tropomyosin PF00261.15 g15318.t1 - 0.05 12.6 0.4 0.079 12 0.3 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:104144-104902 Augustus predicted protein sequence Tomato scaffold624_contigs=9~104144-104902 Peroxin-13_N PF04088.8 g77285.t1 - 0.001 19 0.5 0.12 12.3 0.1 2.2 2 0 0 2 2 2 2 Peroxin 13, N-terminal region | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:206426-207184 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~206426-207184 HrpA_pilin PF09589.5 g77230.t1 - 0.62 10.4 3.8 0.86 10 2.4 1.4 1 1 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:47720-48268 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~47720-48268 DUF3153 PF11353.3 g24805.t1 - 0.068 12.6 1.3 0.075 12.4 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) | Ref_seq=scaffold898_contigs=6, transcript_loc=scaffold898_contigs=6:104937-106046 Augustus predicted protein sequence Tomato scaffold898_contigs=6~104937-106046 DegS PF05384.6 g18841.t1 - 0.013 14.6 1.7 0.019 14.1 1.2 1.2 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:688373-689397 Augustus predicted protein sequence Tomato scaffold731_contigs=13~688373-689397 RVT_3 PF13456.1 g80426.t1 - 0.024 14.4 0 0.029 14.1 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:439385-439627 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~439385-439627 2Fe-2S_Ferredox PF11591.3 g25124.t1 - 0.0072 15.9 2.1 1.5 8.5 0.4 2.4 1 1 1 2 2 2 2 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold916_contigs=9, transcript_loc=scaffold916_contigs=9:36889-37982 Augustus predicted protein sequence Tomato scaffold916_contigs=9~36889-37982 CENP-Q PF13094.1 g76439.t1 - 0.00019 21.4 0.2 0.00019 21.4 0.1 1.9 2 1 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:37472-41890 Augustus predicted protein sequence Tomato scaffold2628_contigs=7~37472-41890 zf-CCHC PF00098.18 g55276.t1 - 0.00011 21.9 0.7 0.00023 20.9 0.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:625342-626547 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~625342-626547 CbiA PF01656.18 g60150.t1 - 0.19 11 0.5 0.24 10.7 0.4 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:162303-162719 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~162303-162719 DBD_Tnp_Mut PF03108.10 g27403.t1 - 0.00000099 28.2 0.1 0.0000017 27.4 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:105927-108102 Augustus predicted protein sequence Tomato scaffold976_contigs=1~105927-108102 TACC PF05010.9 g36948.t1 - 0.086 12.5 0.6 0.11 12.2 0.4 1.2 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:230080-230645 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~230080-230645 Telomere_reg-2 PF10193.4 g14452.t1 - 0.032 14.4 0.1 0.046 13.9 0.1 1.2 1 0 0 1 1 1 0 Telomere length regulation protein | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:454500-456608 Augustus predicted protein sequence Tomato scaffold594_contigs=19~454500-456608 DUF1822 PF08852.6 g66698.t1 - 0.0059 15.4 0.9 0.0061 15.4 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1822) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:96419-97211 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~96419-97211 DUF4593 PF15263.1 g35635.t1 - 0.12 12.2 2.4 0.22 11.3 1.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4593) | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1084521-1084915 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~1084521-1084915 GST_C_4 PF14834.1 g67470.t1 - 0.012 15.5 0 6.4 6.7 0 2.6 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:521608-522282 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~521608-522282 DegQ PF08181.6 g10043.t1 - 0.41 10.4 3.9 27 4.5 0 3.7 5 0 0 5 5 5 0 DegQ (SacQ) family | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:290099-291046 Augustus predicted protein sequence Tomato scaffold481_contigs=9~290099-291046 DBD_Tnp_Mut PF03108.10 g14287.t1 - 0.0026 17.2 0.1 0.0043 16.5 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:190281-190721 Augustus predicted protein sequence Tomato scaffold587_contigs=13~190281-190721 DUF4611 PF15387.1 g39934.t1 - 0.037 14.1 0 0.053 13.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:76323-76553 Augustus predicted protein sequence Tomato scaffold1283_contigs=15~76323-76553 Rib_recp_KP_reg PF05104.7 g70995.t1 - 4.4 7.8 8.5 4.1 7.9 2.7 1.9 1 1 1 2 2 2 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:333769-334110 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~333769-334110 GCIP PF13324.1 g57969.t1 - 0.09 11.9 0 0.09 11.9 0 1.1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:166020-166310 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~166020-166310 UPF0004 PF00919.15 g39823.t1 - 0.11 12.2 0.3 1.5 8.6 0 2.1 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:1-660 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~1-660 DUF4050 PF13259.1 g28736.t1 - 0.13 12.1 0.4 0.14 12 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4050) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:127370-128198 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~127370-128198 DSPc PF00782.15 g17827.t1 - 0.11 12 0 0.14 11.6 0 1.3 1 0 0 1 1 1 0 Dual specificity phosphatase, catalytic domain | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:78556-79148 Augustus predicted protein sequence Tomato scaffold715_contigs=2~78556-79148 DUF2514 PF10721.4 g86285.t1 - 0.0015 18.2 2.7 0.0028 17.3 1.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2514) | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:51456-53052 Augustus predicted protein sequence Tomato scaffold2848_contigs=1~51456-53052 HSCB_C PF07743.8 g74570.t1 - 0.1 13 0.1 0.24 11.8 0.1 1.6 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:23670-24133 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~23670-24133 zf-CCHC PF00098.18 g77274.t1 - 0.016 15.1 5.1 0.016 15.1 3.5 2.2 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:186578-187118 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~186578-187118 Dodecin PF07311.7 g63340.t1 - 0.15 12.1 1.4 0.26 11.3 1 1.4 1 0 0 1 1 1 0 Dodecin | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:325624-325902 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~325624-325902 Turandot PF07240.6 g85669.t1 - 0.0067 15.8 0.1 0.034 13.6 0 2 2 0 0 2 2 2 1 Stress-inducible humoral factor Turandot | Ref_seq=scaffold2813_contigs=1, transcript_loc=scaffold2813_contigs=1:68897-70038 Augustus predicted protein sequence Tomato scaffold2813_contigs=1~68897-70038 DUF4519 PF15012.1 g49127.t1 - 0.12 12.3 0.7 0.2 11.5 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:119815-120075 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~119815-120075 Prp31_C PF09785.4 g34487.t1 - 0.037 14.4 0.3 0.049 14 0.2 1.1 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:107600-108094 Augustus predicted protein sequence Tomato scaffold1151_contigs=2~107600-108094 NTNH_C PF08470.5 g31857.t1 - 0.0034 17 0 0.0042 16.7 0 1.1 1 0 0 1 1 1 1 Nontoxic nonhaemagglutinin C-terminal | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:21353-21613 Augustus predicted protein sequence Tomato scaffold1091_contigs=17~21353-21613 RTA1 PF04479.8 g71893.t1 - 0.14 11.6 0.3 0.14 11.6 0.2 1.2 1 0 0 1 1 1 0 RTA1 like protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:210600-210989 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~210600-210989 DUF2694 PF10904.3 g62639.t1 - 0.027 14.4 0.1 0.057 13.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:136470-137147 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~136470-137147 DUF2303 PF10065.4 g43465.t1 - 0.035 12.9 0.5 0.044 12.6 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:158407-158727 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~158407-158727 DUF4142 PF13628.1 g72647.t1 - 0.04 13.9 1.7 0.073 13.1 1.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:128279-130007 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~128279-130007 HOOK PF05622.7 g55151.t1 - 0.0097 13.7 0.1 0.011 13.5 0.1 1 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:5473-5748 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~5473-5748 AphA_like PF14557.1 g58633.t1 - 0.099 12.1 2.8 0.13 11.8 0.2 1.9 2 0 0 2 2 2 0 Putative AphA-like transcriptional regulator | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:28529-30290 Augustus predicted protein sequence Tomato scaffold1866_contigs=5~28529-30290 HMG_box_2 PF09011.5 g77155.t1 - 0.8 10.1 3.1 2.3 8.6 2.1 1.7 1 1 0 1 1 1 0 HMG-box domain | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:187326-187664 Augustus predicted protein sequence Tomato scaffold2650_contigs=9~187326-187664 DUF4574 PF15141.1 g63629.t1 - 0.035 13.8 0.1 0.073 12.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4574) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:771199-772963 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~771199-772963 DUF2939 PF11159.3 g76177.t1 - 0.0035 17.4 0.5 0.56 10.4 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2939) | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:38242-41245 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~38242-41245 GRP PF07172.6 g73575.t1 - 1.3E-010 41.6 43.1 1.3E-010 41.6 29.9 9.3 1 1 2 3 3 3 1 Glycine rich protein family | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:101853-103432 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~101853-103432 PMD PF10536.4 g62066.t1 - 0.00000082 28.3 0 0.000001 28 0 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:53128-53598 Augustus predicted protein sequence Tomato scaffold1982_contigs=6~53128-53598 DUF4611 PF15387.1 g7692.t1 - 0.035 14.2 0.6 0.058 13.5 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:199679-200350 Augustus predicted protein sequence Tomato scaffold405_contigs=10~199679-200350 DUF2303 PF10065.4 g28365.t1 - 0.067 12 2.1 0.11 11.3 1.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:12354-12755 Augustus predicted protein sequence Tomato scaffold999_contigs=6~12354-12755 Myosin_tail_1 PF01576.14 g46582.t1 - 0.4 8.3 10.1 0.26 8.9 2.1 2.1 2 0 0 2 2 2 0 Myosin tail | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:537019-542353 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~537019-542353 ADIP PF11559.3 g65331.t1 - 0.004 17 4.8 0.0053 16.6 3.3 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:175662-176690 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~175662-176690 DUF329 PF03884.9 g24820.t1 - 0.029 13.9 0 0.041 13.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold900_contigs=1, transcript_loc=scaffold900_contigs=1:12866-13621 Augustus predicted protein sequence Tomato scaffold900_contigs=1~12866-13621 HTH_Tnp_1 PF01527.15 g34923.t1 - 0.14 12.1 0.4 0.43 10.5 0.3 1.8 1 1 0 1 1 1 0 Transposase | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:231602-232980 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~231602-232980 Retrotrans_gag PF03732.12 g87244.t1 - 0.034 14.2 0 0.038 14 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:6862-7083 Augustus predicted protein sequence Tomato scaffold2972_contigs=1~6862-7083 Prothymosin PF03247.9 g20421.t1 - 0.058 13.5 4.3 0.072 13.2 3 1.2 1 0 0 1 1 1 0 Prothymosin/parathymosin family | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:366828-367109 Augustus predicted protein sequence Tomato scaffold774_contigs=20~366828-367109 RVT_3 PF13456.1 g17405.t1 - 2.2E-010 40.1 0.1 3.7E-010 39.4 0.1 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold705_contigs=2, transcript_loc=scaffold705_contigs=2:14527-19711 Augustus predicted protein sequence Tomato scaffold705_contigs=2~14527-19711 SURF6 PF04935.7 g48214.t1 - 0.011 15 11.4 0.012 14.8 7.9 1.1 1 0 0 1 1 1 0 Surfeit locus protein 6 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:6191-7142 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~6191-7142 DUF848 PF05852.6 g31524.t1 - 0.091 12.6 0.2 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:95788-96745 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~95788-96745 ETF_alpha PF00766.14 g57234.t1 - 0.11 12.1 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein FAD-binding domain | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:235858-236151 Augustus predicted protein sequence Tomato scaffold1829_contigs=9~235858-236151 Speriolin_N PF15058.1 g45411.t1 - 0.09 12.6 3.8 0.17 11.7 2.6 1.4 1 1 0 1 1 1 0 Speriolin N terminus | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:167135-168457 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~167135-168457 IFT43 PF15305.1 g65807.t1 - 0.032 14.2 0.5 0.039 13.9 0.3 1.1 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2141_contigs=2, transcript_loc=scaffold2141_contigs=2:1003-1275 Augustus predicted protein sequence Tomato scaffold2141_contigs=2~1003-1275 ATHILA PF03078.10 g54971.t1 - 0.000021 23.2 0 0.000026 23 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1731_contigs=1, transcript_loc=scaffold1731_contigs=1:16937-18696 Augustus predicted protein sequence Tomato scaffold1731_contigs=1~16937-18696 BRE1 PF08647.6 g12828.t1 - 0.4 10.6 4.8 0.32 10.9 0.6 2.2 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:28476-31789 Augustus predicted protein sequence Tomato scaffold561_contigs=10~28476-31789 THOC7 PF05615.8 g11996.t1 - 0.032 14.5 2.5 0.038 14.2 1.8 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:46968-47402 Augustus predicted protein sequence Tomato scaffold535_contigs=8~46968-47402 DUF482 PF04339.7 g78502.t1 - 0.12 11.2 0.1 0.19 10.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF482 | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:139243-139737 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~139243-139737 Pneumo_att_G PF05539.6 g36018.t1 - 5.1 6.3 12 6.3 6 8.3 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:95284-96126 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~95284-96126 zf-BED PF02892.10 g29599.t1 - 0.0047 16.6 1.2 0.0093 15.7 0.8 1.5 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:192050-196745 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~192050-196745 IL8 PF00048.15 g47906.t1 - 0.84 9.6 4 1.1 9.2 2.5 1.4 1 1 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:37680-37898 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~37680-37898 DUF605 PF04652.11 g63214.t1 - 1.1 8.5 12.2 1.3 8.2 8.5 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:27490-28496 Augustus predicted protein sequence Tomato scaffold2032_contigs=5~27490-28496 RVT_2 PF07727.9 g23733.t1 - 0.00015 20.7 0 0.00019 20.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:158308-159192 Augustus predicted protein sequence Tomato scaffold865_contigs=7~158308-159192 PLRV_ORF5 PF01690.12 g49765.t1 - 8.2 5.4 7.4 13 4.8 5.2 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:171061-174798 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~171061-174798 zf-CCHC PF00098.18 g74688.t1 - 0.00014 21.5 4.4 0.00023 20.9 3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:400290-400650 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~400290-400650 HEAT_2 PF13646.1 g16076.t1 - 0.071 13.4 0 0.35 11.1 0 1.9 1 1 0 1 1 1 0 HEAT repeats | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:232349-235886 Augustus predicted protein sequence Tomato scaffold654_contigs=10~232349-235886 DUF4211 PF13926.1 g31338.t1 - 0.088 12.2 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) | Ref_seq=scaffold1070_contigs=2, transcript_loc=scaffold1070_contigs=2:26853-27095 Augustus predicted protein sequence Tomato scaffold1070_contigs=2~26853-27095 Nop14 PF04147.7 g87150.t1 - 0.11 10.3 21.9 0.12 10.3 15.2 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2945_contigs=1, transcript_loc=scaffold2945_contigs=1:3265-3465 Augustus predicted protein sequence Tomato scaffold2945_contigs=1~3265-3465 Toxin_7 PF05980.7 g65404.t1 - 0.16 12 0.8 0.16 12 0.6 1.8 2 0 0 2 2 2 0 Toxin 7 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:402076-402396 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~402076-402396 DUF620 PF04788.7 g86233.t1 - 0.041 13 0 0.047 12.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF620) | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:22671-24149 Augustus predicted protein sequence Tomato scaffold2845_contigs=1~22671-24149 DUF3095 PF11294.3 g25485.t1 - 0.038 13 0 0.048 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:33293-36063 Augustus predicted protein sequence Tomato scaffold929_contigs=9~33293-36063 HrpB7 PF09486.5 g25005.t1 - 0.0082 16 0.4 0.0095 15.8 0.3 1.2 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:9876-10211 Augustus predicted protein sequence Tomato scaffold909_contigs=6~9876-10211 Optomotor-blind PF11078.3 g5793.t1 - 1.5 9.2 3.8 11 6.4 2.7 2 1 1 0 1 1 1 0 Optomotor-blind protein N-terminal region | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:231168-233902 Augustus predicted protein sequence Tomato scaffold338_contigs=10~231168-233902 FAM212 PF15342.1 g11144.t1 - 0.13 11.8 0.5 0.21 11.2 0.4 1.3 1 0 0 1 1 1 0 FAM212 family | Ref_seq=scaffold516_contigs=3, transcript_loc=scaffold516_contigs=3:3332-3914 Augustus predicted protein sequence Tomato scaffold516_contigs=3~3332-3914 Trypan_PARP PF05887.6 g34171.t1 - 3.8 7.3 7.7 8.2 6.2 5.3 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:62299-68543 Augustus predicted protein sequence Tomato scaffold1144_contigs=4~62299-68543 Mlo PF03094.10 g85033.t1 - 0.0074 14.4 0 0.012 13.7 0 1.3 1 0 0 1 1 1 1 Mlo family | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:59264-63191 Augustus predicted protein sequence Tomato scaffold2788_contigs=1~59264-63191 DUF3644 PF12358.3 g66681.t1 - 0.099 12.9 0.3 0.39 11 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3644) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:38720-42935 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~38720-42935 DUF632 PF04782.7 g87427.t1 - 0.081 11.9 0.2 0.23 10.5 0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF632) | Ref_seq=scaffold3064_contigs=1, transcript_loc=scaffold3064_contigs=1:3311-4382 Augustus predicted protein sequence Tomato scaffold3064_contigs=1~3311-4382 PUD PF03714.9 g43484.t1 - 0.095 12.8 0 0.11 12.6 0 1.1 1 0 0 1 1 1 0 Bacterial pullanase-associated domain | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:19258-19659 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~19258-19659 DUF3275 PF11679.3 g58954.t1 - 0.037 13.6 2.8 0.065 12.8 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold1884_contigs=4, transcript_loc=scaffold1884_contigs=4:65918-72124 Augustus predicted protein sequence Tomato scaffold1884_contigs=4~65918-72124 CblD PF07434.6 g24562.t1 - 0.11 11.2 0.3 0.11 11.2 0.2 1.1 1 0 0 1 1 1 0 CblD like pilus biogenesis initiator | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:61767-62030 Augustus predicted protein sequence Tomato scaffold888_contigs=4~61767-62030 HD-ZIP_N PF04618.7 g37827.t1 - 0.036 14.5 1 0.048 14.1 0.7 1.2 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:3335-3613 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~3335-3613 Gal-bind_lectin PF00337.17 g57609.t1 - 0.059 12.7 0 7.9 5.8 0 2.2 2 0 0 2 2 2 0 Galactoside-binding lectin | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:1397-5188 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~1397-5188 DUF4201 PF13870.1 g39188.t1 - 5.1 6.5 13.1 0.39 10.1 0.4 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:238785-241675 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~238785-241675 DUF1517 PF07466.6 g24647.t1 - 0.11 11.5 0.2 0.12 11.3 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) | Ref_seq=scaffold892_contigs=7, transcript_loc=scaffold892_contigs=7:3022-3395 Augustus predicted protein sequence Tomato scaffold892_contigs=7~3022-3395 DUF4250 PF14056.1 g35915.t1 - 0.12 12.1 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:87587-88213 Augustus predicted protein sequence Tomato scaffold1185_contigs=5~87587-88213 DUF1539 PF07560.6 g59882.t1 - 0.027 14.3 0.5 0.031 14.1 0.3 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1539) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:90304-90612 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~90304-90612 CENP-F_leu_zip PF10473.4 g8238.t1 - 0.03 14.1 6.7 0.04 13.7 1.5 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:78859-81457 Augustus predicted protein sequence Tomato scaffold422_contigs=2~78859-81457 PRCC PF10253.4 g36222.t1 - 0.14 12.8 5.4 0.17 12.5 0.1 2.2 2 0 0 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:3441-4311 Augustus predicted protein sequence Tomato scaffold1189_contigs=6~3441-4311 APS_kinase PF01583.15 g18705.t1 - 0.057 13 0 0.071 12.7 0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:230591-230977 Augustus predicted protein sequence Tomato scaffold731_contigs=13~230591-230977 DUF3346 PF11826.3 g48156.t1 - 0.054 13.2 0 0.064 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3346) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:79636-80166 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~79636-80166 DUF3748 PF12566.3 g14436.t1 - 0.056 13.3 0 0.064 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3748) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:370750-370968 Augustus predicted protein sequence Tomato scaffold594_contigs=19~370750-370968 DUF1631 PF07793.6 g9935.t1 - 0.061 11.4 0.6 0.07 11.2 0.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) | Ref_seq=scaffold480_contigs=8, transcript_loc=scaffold480_contigs=8:40081-40455 Augustus predicted protein sequence Tomato scaffold480_contigs=8~40081-40455 TPR_19 PF14559.1 g76307.t1 - 0.033 14.5 0 0.053 13.8 0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold2622_contigs=9, transcript_loc=scaffold2622_contigs=9:57431-57867 Augustus predicted protein sequence Tomato scaffold2622_contigs=9~57431-57867 DUF3987 PF13148.1 g45858.t1 - 2 6.9 5 3.7 6 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:19513-25071 Augustus predicted protein sequence Tomato scaffold1466_contigs=3~19513-25071 zf-CCHC PF00098.18 g48471.t1 - 0.000016 24.5 1.5 0.000033 23.5 1 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:250455-250982 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~250455-250982 DUF1327 PF07041.6 g16408.t1 - 0.053 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1327) | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:102421-103074 Augustus predicted protein sequence Tomato scaffold670_contigs=7~102421-103074 RNase_H2-Ydr279 PF09468.5 g42044.t1 - 0.14 11.3 7.2 0.14 11.3 5 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:303943-304233 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~303943-304233 DUF607 PF04678.8 g48639.t1 - 0.053 13.4 0.1 0.075 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF607 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:580230-584456 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~580230-584456 Sec62 PF03839.11 g30039.t1 - 0.28 10.5 9.5 0.34 10.2 6.6 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:319066-319563 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~319066-319563 DUF760 PF05542.6 g70127.t1 - 0.0077 16.3 0 0.049 13.8 0 2 2 0 0 2 2 2 1 Protein of unknown function (DUF760) | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:143244-149075 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~143244-149075 DUF4658 PF15555.1 g1108.t1 - 0.041 13.7 0.2 0.07 13 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4658) | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:66592-69447 Augustus predicted protein sequence Tomato scaffold191_contigs=2~66592-69447 LEAP-2 PF07359.6 g6631.t1 - 5.4 6.7 6.3 3.6 7.3 2.5 1.8 2 0 0 2 2 2 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:72427-72787 Augustus predicted protein sequence Tomato scaffold380_contigs=11~72427-72787 DUF1985 PF09331.6 g970.t1 - 0.00000084 28.8 0 0.0000014 28.1 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold183_contigs=2, transcript_loc=scaffold183_contigs=2:4732-5726 Augustus predicted protein sequence Tomato scaffold183_contigs=2~4732-5726 VARLMGL PF14383.1 g78375.t1 - 0.021 14 0.1 0.045 12.9 0.1 1.5 1 0 0 1 1 1 0 DUF761-associated sequence motif | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:37171-40966 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~37171-40966 Peptidase_M85 PF13678.1 g28654.t1 - 0.036 13.4 0.1 0.047 13 0.1 1.1 1 0 0 1 1 1 0 NFkB-p65-degrading zinc protease | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:58628-59056 Augustus predicted protein sequence Tomato scaffold1008_contigs=4~58628-59056 zf-CCHC PF00098.18 g2154.t1 - 0.028 14.3 0.4 0.042 13.7 0.3 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:27220-27603 Augustus predicted protein sequence Tomato scaffold228_contigs=4~27220-27603 DUF3961 PF13106.1 g3300.t1 - 0.13 11.8 0 10 5.7 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3961) | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:122836-123111 Augustus predicted protein sequence Tomato scaffold266_contigs=2~122836-123111 EBV-NA3 PF05009.7 g87028.t1 - 1.2 8.3 3 1.2 8.3 2.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold2925_contigs=1, transcript_loc=scaffold2925_contigs=1:1-159 Augustus predicted protein sequence Tomato scaffold2925_contigs=1~1-159 PI3K_1B_p101 PF10486.4 g78887.t1 - 0.06 10.9 5 0.066 10.7 3.4 1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit | Ref_seq=scaffold2679_contigs=24, transcript_loc=scaffold2679_contigs=24:466913-468962 Augustus predicted protein sequence Tomato scaffold2679_contigs=24~466913-468962 Big_3 PF07523.7 g52842.t1 - 0.081 13 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold1650_contigs=8, transcript_loc=scaffold1650_contigs=8:22429-23193 Augustus predicted protein sequence Tomato scaffold1650_contigs=8~22429-23193 Myc_N PF01056.13 g13467.t1 - 0.24 10.5 2.7 0.38 9.8 1.9 1.3 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:1-2594 Augustus predicted protein sequence Tomato scaffold576_contigs=15~1-2594 UPF0731 PF14982.1 g1085.t1 - 0.049 13.5 0.8 0.052 13.4 0.6 1.3 1 1 0 1 1 1 0 UPF0731 family | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:41884-42108 Augustus predicted protein sequence Tomato scaffold189_contigs=2~41884-42108 Rifin_STEVOR PF02009.11 g18207.t1 - 0.015 14.9 0 0.018 14.6 0 1.1 1 0 0 1 1 1 0 Rifin/stevor family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:745363-745869 Augustus predicted protein sequence Tomato scaffold720_contigs=9~745363-745869 zf-CCHC_5 PF14787.1 g71923.t1 - 0.23 11 4.2 0.51 9.8 2.9 1.6 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:343337-344187 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~343337-344187 Dimer_Tnp_hAT PF05699.9 g84450.t1 - 0.000093 21.9 0 0.0002 20.9 0 1.5 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2770_contigs=1, transcript_loc=scaffold2770_contigs=1:2522-3965 Augustus predicted protein sequence Tomato scaffold2770_contigs=1~2522-3965 DUF169 PF02596.10 g75109.t1 - 0.15 11.3 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Uncharacterised ArCR, COG2043 | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:286690-286950 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~286690-286950 RVT_3 PF13456.1 g65759.t1 - 0.13 12 0.1 0.27 11 0 1.5 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:173339-173950 Augustus predicted protein sequence Tomato scaffold2138_contigs=7~173339-173950 PLU-1 PF08429.6 g70360.t1 - 0.11 11.3 0 0.14 10.9 0 1.1 1 0 0 1 1 1 0 PLU-1-like protein | Ref_seq=scaffold2338_contigs=16, transcript_loc=scaffold2338_contigs=16:4562-5023 Augustus predicted protein sequence Tomato scaffold2338_contigs=16~4562-5023 Dscam_C PF12355.3 g42517.t1 - 0.044 14 2.4 0.044 14 1.6 1.2 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:70039-70372 Augustus predicted protein sequence Tomato scaffold1361_contigs=6~70039-70372 DUF3432 PF11914.3 g42276.t1 - 0.042 13.8 4.1 0.11 12.5 2.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3432) | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:38857-39350 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~38857-39350 Syntaxin PF00804.20 g41681.t1 - 0.09 12.9 0.4 0.13 12.4 0.3 1.2 1 0 0 1 1 1 0 Syntaxin | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:228011-228424 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~228011-228424 Retrotrans_gag PF03732.12 g64990.t1 - 0.0038 17.2 4.2 0.027 14.5 0.1 3.4 3 1 1 4 4 4 1 Retrotransposon gag protein | Ref_seq=scaffold2106_contigs=11, transcript_loc=scaffold2106_contigs=11:36934-38791 Augustus predicted protein sequence Tomato scaffold2106_contigs=11~36934-38791 NOA36 PF06524.7 g65618.t1 - 4.4 6.4 5.1 4.7 6.3 3.5 1.1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold2135_contigs=3, transcript_loc=scaffold2135_contigs=3:1-2760 Augustus predicted protein sequence Tomato scaffold2135_contigs=3~1-2760 MogR_DNAbind PF12181.3 g5315.t1 - 0.026 14.2 0.4 0.03 14 0.3 1.1 1 0 0 1 1 1 0 DNA binding domain of the motility gene repressor (MogR) | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:88852-89247 Augustus predicted protein sequence Tomato scaffold322_contigs=4~88852-89247 DUF3812 PF12757.2 g78704.t1 - 0.099 12.6 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3812) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:159617-159970 Augustus predicted protein sequence Tomato scaffold2674_contigs=11~159617-159970 PAS_5 PF07310.8 g86982.t1 - 0.0027 17.2 0.1 1.5 8.3 0 2.1 1 1 1 2 2 2 2 PAS domain | Ref_seq=scaffold2918_contigs=1, transcript_loc=scaffold2918_contigs=1:4221-4899 Augustus predicted protein sequence Tomato scaffold2918_contigs=1~4221-4899 YdjO PF14169.1 g77956.t1 - 0.025 14 0.1 0.049 13 0.1 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:56692-58639 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~56692-58639 zf-CCHC PF00098.18 g10768.t1 - 0.000092 22.1 1 0.00016 21.4 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold506_contigs=3, transcript_loc=scaffold506_contigs=3:11628-12191 Augustus predicted protein sequence Tomato scaffold506_contigs=3~11628-12191 DUF755 PF05501.6 g60095.t1 - 0.089 12.8 6.4 0.15 12.1 4.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:3897-4684 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~3897-4684 UPF0118 PF01594.11 g19688.t1 - 0.011 14.8 6.7 0.015 14.3 4.6 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF20 | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:105921-107831 Augustus predicted protein sequence Tomato scaffold757_contigs=4~105921-107831 PMD PF10536.4 g44377.t1 - 4.6E-012 45.6 0.6 0.000000025 33.3 0.1 2.1 1 1 1 2 2 2 2 Plant mobile domain | Ref_seq=scaffold1428_contigs=7, transcript_loc=scaffold1428_contigs=7:3158-4887 Augustus predicted protein sequence Tomato scaffold1428_contigs=7~3158-4887 CCDC144C PF14915.1 g3369.t1 - 0.0095 14.8 4.2 0.0095 14.8 2.9 1.4 1 1 0 1 1 1 1 CCDC144C protein coiled-coil region | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:173200-174024 Augustus predicted protein sequence Tomato scaffold270_contigs=10~173200-174024 RNase_H2-Ydr279 PF09468.5 g37833.t1 - 0.024 13.8 0.5 0.026 13.7 0.3 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:19146-20643 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~19146-20643 Transposase_28 PF04195.7 g67128.t1 - 0.0089 15.3 0.1 0.016 14.4 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:58001-60197 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~58001-60197 HTH_8 PF02954.14 g80876.t1 - 0.038 13.5 0.3 0.33 10.5 0.1 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:162623-162913 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~162623-162913 gag_pre-integrs PF13976.1 g50352.t1 - 0.0000025 27 1 0.0000057 25.8 0.7 1.6 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:137433-139097 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~137433-139097 Tombus_P19 PF03220.8 g45237.t1 - 0.073 12.4 0.3 0.12 11.7 0.1 1.4 1 1 0 1 1 1 0 Tombusvirus P19 core protein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:496344-496646 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~496344-496646 zf-CCHC PF00098.18 g3909.t1 - 0.00081 19.2 0.8 0.0014 18.4 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:19405-19938 Augustus predicted protein sequence Tomato scaffold283_contigs=2~19405-19938 DUF2930 PF11152.3 g77705.t1 - 0.12 11.5 0.5 0.17 11 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:96454-97137 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~96454-97137 GMC_oxred_C PF05199.8 g45599.t1 - 0.0033 17.7 0.5 0.0052 17 0.3 1.2 1 0 0 1 1 1 1 GMC oxidoreductase | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:10805-11284 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~10805-11284 RNase_H2-Ydr279 PF09468.5 g35164.t1 - 0.02 14.1 5.9 0.023 13.9 4.1 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:482766-483653 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~482766-483653 FTA2 PF13095.1 g68383.t1 - 0.15 11.6 0 0.15 11.6 0 1.1 1 0 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:4979-5262 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~4979-5262 MHCassoc_trimer PF08831.5 g38868.t1 - 0.055 13.3 0.4 0.092 12.6 0.3 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:69000-69389 Augustus predicted protein sequence Tomato scaffold1253_contigs=5~69000-69389 KorB_C PF06613.6 g78978.t1 - 0.0057 16 0.1 4.1 6.9 0 2.4 2 0 0 2 2 2 2 KorB C-terminal beta-barrel domain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:47147-49776 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~47147-49776 Spc7 PF08317.6 g39591.t1 - 0.017 13.8 1.3 0.89 8.1 1.1 2 1 1 1 2 2 2 0 Spc7 kinetochore protein | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:370047-370805 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~370047-370805 SpoIIP PF07454.6 g52653.t1 - 0.13 11.4 0 4.7 6.2 0 2 2 0 0 2 2 2 0 Stage II sporulation protein P (SpoIIP) | Ref_seq=scaffold1646_contigs=2, transcript_loc=scaffold1646_contigs=2:1-895 Augustus predicted protein sequence Tomato scaffold1646_contigs=2~1-895 ATHILA PF03078.10 g7634.t1 - 0.00085 18 0 0.0035 16 0 1.8 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:10193-10573 Augustus predicted protein sequence Tomato scaffold405_contigs=10~10193-10573 Pneumo_att_G PF05539.6 g954.t1 - 1.4 8.1 6.5 1.7 7.9 4.5 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:105802-106439 Augustus predicted protein sequence Tomato scaffold182_contigs=2~105802-106439 zf-CCHC PF00098.18 g16205.t1 - 0.073 13 0.7 0.11 12.5 0.5 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold659_contigs=1, transcript_loc=scaffold659_contigs=1:83713-84129 Augustus predicted protein sequence Tomato scaffold659_contigs=1~83713-84129 Dscam_C PF12355.3 g41965.t1 - 5.7 7.2 11.1 9.9 6.4 7.7 1.5 1 1 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:46202-46660 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~46202-46660 Tropomyosin PF00261.15 g69585.t1 - 0.032 13.3 3.3 0.28 10.2 1.5 2.1 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:185517-186212 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~185517-186212 DUF2808 PF10989.3 g86180.t1 - 0.0019 17.8 0.1 0.0032 17 0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2808) | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:47026-48209 Augustus predicted protein sequence Tomato scaffold2841_contigs=1~47026-48209 Talin_middle PF09141.5 g19595.t1 - 0.11 12.1 0.3 0.14 11.8 0.2 1.1 1 0 0 1 1 1 0 Talin, middle domain | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:146929-148068 Augustus predicted protein sequence Tomato scaffold756_contigs=8~146929-148068 Zein-binding PF04576.10 g38003.t1 - 0.14 12.2 8.7 0.26 11.4 6 1.4 1 0 0 1 1 1 0 Zein-binding | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:472936-475830 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~472936-475830 DUF2407_C PF13373.1 g77320.t1 - 0.015 15.1 1.2 2.3 8.1 0 2.2 2 0 0 2 2 2 0 DUF2407 C-terminal domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:12344-12938 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~12344-12938 ATX_III PF08098.6 g74427.t1 - 1.6 8.6 12.1 2.8 7.8 0.8 2.7 2 0 0 2 2 2 0 Anemonia sulcata toxin III family | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:10831-11360 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~10831-11360 Sterol_MT_C PF08498.5 g40909.t1 - 0.12 12.3 0 0.18 11.7 0 1.3 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:114293-114667 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~114293-114667 DUF2368 PF10166.4 g46880.t1 - 0.076 12.6 0.1 0.083 12.5 0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:468886-469533 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~468886-469533 DUF1985 PF09331.6 g44779.t1 - 0.086 12.6 0 0.18 11.5 0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1439_contigs=3, transcript_loc=scaffold1439_contigs=3:65500-67179 Augustus predicted protein sequence Tomato scaffold1439_contigs=3~65500-67179 TgMIC1 PF11476.3 g59894.t1 - 3.2 7.2 6.4 1.5 8.3 2.7 1.7 1 1 1 2 2 2 0 Toxoplasma gondii micronemal protein 1 TgMIC1 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:172921-173535 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~172921-173535 DUF4640 PF15480.1 g20336.t1 - 0.14 11.6 0.2 9.9 5.6 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4640) | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:84720-85804 Augustus predicted protein sequence Tomato scaffold773_contigs=6~84720-85804 KN_motif PF12075.3 g11559.t1 - 0.052 13.3 5.1 4 7.3 0 3.1 3 0 0 3 3 3 0 KN motif | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:415341-415887 Augustus predicted protein sequence Tomato scaffold525_contigs=12~415341-415887 RasGAP_C PF03836.10 g85226.t1 - 0.011 15.4 0.1 0.015 14.9 0.1 1.2 1 0 0 1 1 1 0 RasGAP C-terminus | Ref_seq=scaffold2795_contigs=1, transcript_loc=scaffold2795_contigs=1:1939-4363 Augustus predicted protein sequence Tomato scaffold2795_contigs=1~1939-4363 CDC45 PF02724.9 g52137.t1 - 0.0019 16.3 11.8 0.0019 16.3 8.2 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:152185-152568 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~152185-152568 LZ_Tnp_IS66 PF13007.2 g21242.t1 - 3.3 8.4 7 1.2 9.8 0.4 2.1 2 0 0 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:195849-196181 Augustus predicted protein sequence Tomato scaffold795_contigs=8~195849-196181 Imm22 PF15592.1 g27210.t1 - 0.019 15.3 0.2 0.039 14.2 0 1.6 2 0 0 2 2 2 0 Immunity protein 22 | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:14965-15474 Augustus predicted protein sequence Tomato scaffold974_contigs=15~14965-15474 YfmQ PF10787.4 g34180.t1 - 0.15 11.4 0 0.19 11 0 1.1 1 0 0 1 1 1 0 Uncharacterised protein from bacillus cereus group | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:111857-112237 Augustus predicted protein sequence Tomato scaffold1144_contigs=4~111857-112237 MYT1 PF08474.6 g70464.t1 - 0.073 12.5 0.1 0.23 10.9 0 1.7 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:404173-404607 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~404173-404607 Myb_DNA-bind_4 PF13837.1 g74552.t1 - 0.0088 16.1 0.9 3.7 7.7 0.1 2.4 2 0 0 2 2 2 2 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold2564_contigs=13, transcript_loc=scaffold2564_contigs=13:88471-90021 Augustus predicted protein sequence Tomato scaffold2564_contigs=13~88471-90021 DUF641 PF04859.7 g60068.t1 - 0.0023 17.6 2 0.0023 17.6 1.4 1.4 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:187108-187326 Augustus predicted protein sequence Tomato scaffold1939_contigs=7~187108-187326 SOG2 PF10428.4 g77370.t1 - 4.8 5.7 6.6 5 5.6 4.6 1.3 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:144488-145111 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~144488-145111 CCDC74_C PF14917.1 g30765.t1 - 0.046 13.7 0.3 0.071 13.1 0.2 1.2 1 0 0 1 1 1 0 Coiled coil protein 74, C terminal | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:258162-265104 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~258162-265104 Myc_N PF01056.13 g31515.t1 - 7.8 5.5 6.7 4.4 6.3 2.5 1.9 2 0 0 2 2 2 0 Myc amino-terminal region | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:62910-64615 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~62910-64615 ATHILA PF03078.10 g73827.t1 - 0.00059 18.5 0.1 0.14 10.7 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:108269-108646 Augustus predicted protein sequence Tomato scaffold2510_contigs=23~108269-108646 DUF2127 PF09900.4 g36099.t1 - 0.14 12.1 0.1 0.17 11.9 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:345091-345321 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~345091-345321 Retrotrans_gag PF03732.12 g65189.t1 - 0.00024 21.1 0 0.00042 20.3 0 1.4 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:232994-233269 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~232994-233269 YpM PF09144.5 g36467.t1 - 0.1 12.5 0 0.13 12.2 0 1.2 1 0 0 1 1 1 0 Yersinia pseudotuberculosis mitogen | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:66848-67279 Augustus predicted protein sequence Tomato scaffold1196_contigs=5~66848-67279 RVP_2 PF08284.6 g59673.t1 - 0.000000047 33 0 0.000000068 32.5 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1931_contigs=8, transcript_loc=scaffold1931_contigs=8:10210-11479 Augustus predicted protein sequence Tomato scaffold1931_contigs=8~10210-11479 RFC1 PF08519.7 g72341.t1 - 0.12 12.1 0 0.19 11.4 0 1.2 1 0 0 1 1 1 0 Replication factor RFC1 C terminal domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1151068-1151490 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1151068-1151490 Antimicrobial12 PF08107.6 g4221.t1 - 0.26 10.8 1.2 0.65 9.5 0.7 1.7 2 0 0 2 2 2 0 Pleurocidin family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:399071-400375 Augustus predicted protein sequence Tomato scaffold293_contigs=5~399071-400375 P-II PF00543.17 g33061.t1 - 0.11 13 0 0.17 12.4 0 1.3 1 0 0 1 1 1 0 Nitrogen regulatory protein P-II | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:217664-220220 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~217664-220220 Herpes_BLRF2 PF05812.7 g77491.t1 - 0.009 15.8 2.4 0.012 15.4 1.7 1.2 1 0 0 1 1 1 1 Herpesvirus BLRF2 protein | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:160220-160675 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~160220-160675 Phostensin_N PF13916.1 g10335.t1 - 0.028 14.4 0.1 0.035 14 0.1 1.3 1 0 0 1 1 1 0 PP1-regulatory protein, Phostensin N-terminal | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:288322-289079 Augustus predicted protein sequence Tomato scaffold494_contigs=9~288322-289079 PMD PF10536.4 g35882.t1 - 0.048 12.6 0.3 0.047 12.6 0.2 1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:100544-100825 Augustus predicted protein sequence Tomato scaffold1184_contigs=2~100544-100825 ATHILA PF03078.10 g49172.t1 - 0.0000045 25.5 0 0.045 12.3 0 3.2 3 1 1 4 4 4 2 ATHILA ORF-1 family | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:81250-82604 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~81250-82604 SPR1 PF15356.1 g86198.t1 - 0.036 14.4 5.2 0.052 13.8 3.6 1.4 1 0 0 1 1 1 0 Psoriasis susceptibility locus 2 | Ref_seq=scaffold2842_contigs=1, transcript_loc=scaffold2842_contigs=1:51500-51949 Augustus predicted protein sequence Tomato scaffold2842_contigs=1~51500-51949 Voltage_CLC PF00654.15 g76407.t1 - 0.028 13.4 0 0.031 13.2 0 1 1 0 0 1 1 1 0 Voltage gated chloride channel | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:47339-47593 Augustus predicted protein sequence Tomato scaffold2625_contigs=4~47339-47593 Flavi_propep PF01570.12 g44486.t1 - 0.014 15.1 1 3.9 7.2 0.2 2.2 2 0 0 2 2 2 0 Flavivirus polyprotein propeptide | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:84822-88893 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~84822-88893 DASH_Hsk3 PF08227.6 g45339.t1 - 0.011 15.8 0.4 0.28 11.3 0.1 2.3 1 1 1 2 2 2 0 DASH complex subunit Hsk3 like | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:886431-887192 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~886431-887192 DUF982 PF06169.7 g55059.t1 - 0.0095 15.6 0.6 0.03 14 0.2 2 1 1 2 3 3 3 1 Protein of unknown function (DUF982) | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:46549-46836 Augustus predicted protein sequence Tomato scaffold1736_contigs=8~46549-46836 Sporozoite_P67 PF05642.6 g45945.t1 - 0.017 13 2.3 0.016 13.1 1.6 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:325221-325613 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~325221-325613 PK_C PF02887.11 g44011.t1 - 0.013 15 1.2 0.015 14.8 0.8 1.1 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain | Ref_seq=scaffold1401_contigs=5, transcript_loc=scaffold1401_contigs=5:41256-41477 Augustus predicted protein sequence Tomato scaffold1401_contigs=5~41256-41477 zf-H2C2 PF09337.5 g73373.t1 - 0.026 13.9 1.3 0.73 9.2 0 2.3 2 0 0 2 2 2 0 His(2)-Cys(2) zinc finger | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:348832-349694 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~348832-349694 DUF4028 PF13220.1 g79135.t1 - 0.017 14.7 0.4 0.029 13.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4028) | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:13117-13876 Augustus predicted protein sequence Tomato scaffold2685_contigs=11~13117-13876 QH-AmDH_gamma PF08992.6 g51537.t1 - 0.024 14.3 0.1 8.5 6.2 0 3.7 2 1 2 4 4 4 0 Quinohemoprotein amine dehydrogenase, gamma subunit | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:242825-243409 Augustus predicted protein sequence Tomato scaffold1616_contigs=7~242825-243409 YdjO PF14169.1 g17845.t1 - 0.0015 17.8 0.1 0.0027 17.1 0.1 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:124391-125776 Augustus predicted protein sequence Tomato scaffold715_contigs=2~124391-125776 Gifsy-2 PF13856.1 g45634.t1 - 0.12 12.4 0 0.16 12.1 0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:151292-152138 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~151292-152138 zf-CCHC PF00098.18 g33353.t1 - 0.0000016 27.7 0.9 0.0000024 27.2 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:609173-609448 Augustus predicted protein sequence Tomato scaffold1126_contigs=23~609173-609448 DBD_Tnp_Mut PF03108.10 g82503.t1 - 0.00000015 30.8 0.1 0.00000025 30.1 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:42374-45074 Augustus predicted protein sequence Tomato scaffold2745_contigs=7~42374-45074 Atg14 PF10186.4 g49980.t1 - 0.64 8.9 5 0.69 8.7 3.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:61528-61923 Augustus predicted protein sequence Tomato scaffold1551_contigs=3~61528-61923 Cwf_Cwc_15 PF04889.7 g1809.t1 - 0.11 12.1 2.4 0.14 11.8 1.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:92864-93152 Augustus predicted protein sequence Tomato scaffold217_contigs=3~92864-93152 DDE_Tnp_IS66 PF03050.9 g62197.t1 - 0.064 12.4 0 0.068 12.3 0 1.1 1 0 0 1 1 1 0 Transposase IS66 family | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:81582-81896 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~81582-81896 PGBA_C PF15437.1 g83480.t1 - 0.0094 16 0.6 0.013 15.6 0.4 1.2 1 0 0 1 1 1 1 Plasminogen-binding protein pgbA C-terminal | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:653104-654003 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~653104-654003 DpnD-PcfM PF14207.1 g47301.t1 - 0.035 13.8 0.2 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:102067-103404 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~102067-103404 zf-CCHC PF00098.18 g22350.t1 - 0.000035 23.5 1.7 0.000059 22.8 1.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold826_contigs=19, transcript_loc=scaffold826_contigs=19:32862-33296 Augustus predicted protein sequence Tomato scaffold826_contigs=19~32862-33296 WEMBL PF05701.6 g42719.t1 - 0.03 12.7 0.4 0.05 12 0.3 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:21847-22227 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~21847-22227 TIM21 PF08294.6 g30022.t1 - 0.063 12.9 2.4 0.18 11.4 0.1 2.5 2 1 0 2 2 2 0 TIM21 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:228145-228684 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~228145-228684 NAM-associated PF14303.1 g82849.t1 - 0.000022 24.8 12.3 0.000029 24.4 8.5 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:13121-13522 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~13121-13522 Kinocilin PF15033.1 g9098.t1 - 0.17 11.4 0.6 19 4.8 0 2.4 2 0 0 2 2 2 0 Kinocilin protein | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:107079-108363 Augustus predicted protein sequence Tomato scaffold446_contigs=6~107079-108363 COG7 PF10191.4 g41940.t1 - 0.018 12.9 0 0.02 12.8 0 1 1 0 0 1 1 1 0 Golgi complex component 7 (COG7) | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:390911-391811 Augustus predicted protein sequence Tomato scaffold1345_contigs=14~390911-391811 GP41 PF00517.12 g615.t1 - 0.026 14 0.1 0.039 13.5 0.1 1.2 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:102267-105998 Augustus predicted protein sequence Tomato scaffold66_contigs=5~102267-105998 zf-CCHC PF00098.18 g8016.t1 - 0.0017 18.2 1.1 0.0024 17.7 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:314433-314870 Augustus predicted protein sequence Tomato scaffold413_contigs=6~314433-314870 TT_ORF2 PF02957.10 g82467.t1 - 0.25 12 1.6 0.31 11.7 1.1 1.2 1 0 0 1 1 1 0 TT viral ORF2 | Ref_seq=scaffold2744_contigs=5, transcript_loc=scaffold2744_contigs=5:1-377 Augustus predicted protein sequence Tomato scaffold2744_contigs=5~1-377 MitMem_reg PF13012.1 g20621.t1 - 0.0048 16.9 0.3 0.55 10.3 0 2.2 2 0 0 2 2 2 2 Maintenance of mitochondrial structure and function | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:43986-44486 Augustus predicted protein sequence Tomato scaffold777_contigs=4~43986-44486 DUF2201_N PF13203.1 g28849.t1 - 0.001 18.3 2.8 0.0012 18 1.9 1.2 1 0 0 1 1 1 1 Putative metallopeptidase domain | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:541877-542308 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~541877-542308 TFIIF_alpha PF05793.7 g17966.t1 - 4.4 5.5 29.3 5.7 5.1 20.3 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:62808-63958 Augustus predicted protein sequence Tomato scaffold720_contigs=9~62808-63958 zf-CCHC PF00098.18 g27536.t1 - 0.00011 21.9 0.7 0.00017 21.3 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:469456-470833 Augustus predicted protein sequence Tomato scaffold980_contigs=13~469456-470833 RVT_3 PF13456.1 g39709.t1 - 0.42 10.4 2.2 2.2 8.1 0.2 2.6 3 0 0 3 3 3 0 Reverse transcriptase-like | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:55707-59430 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~55707-59430 ATHILA PF03078.10 g70721.t1 - 0.015 13.9 0 0.02 13.5 0 1.3 1 1 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:104389-105309 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~104389-105309 DUF1515 PF07439.6 g5886.t1 - 0.47 10.2 2.4 1.4 8.7 0.3 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:48071-48394 Augustus predicted protein sequence Tomato scaffold344_contigs=14~48071-48394 IFT57 PF10498.4 g8661.t1 - 0.074 11.7 4.2 0.11 11.1 2.9 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:390469-392728 Augustus predicted protein sequence Tomato scaffold429_contigs=9~390469-392728 ATHILA PF03078.10 g50160.t1 - 0.000094 21.1 0 0.0013 17.4 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:44222-46069 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~44222-46069 Viral_helicase1 PF01443.13 g71678.t1 - 0.028 13.9 0.2 0.041 13.4 0.1 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:94837-95744 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~94837-95744 bZIP_1 PF00170.16 g57564.t1 - 0.0086 16 7.7 0.069 13.1 1.3 2.4 1 1 1 2 2 2 2 bZIP transcription factor | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:172539-173012 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~172539-173012 IFP_35_N PF07334.8 g58032.t1 - 0.072 13 1.1 0.18 11.8 0.8 1.8 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:201856-202533 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~201856-202533 Laminin_G_3 PF13385.1 g53051.t1 - 0.057 13.6 0.1 0.061 13.5 0 1.2 1 0 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:193918-194199 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~193918-194199 AAA_27 PF13514.1 g33579.t1 - 0.037 11.7 1 0.046 11.4 0.7 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:174540-174947 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~174540-174947 ParB PF08775.5 g10001.t1 - 0.018 15.3 0 0.022 15 0 1.1 1 0 0 1 1 1 0 ParB family | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:135235-135672 Augustus predicted protein sequence Tomato scaffold481_contigs=9~135235-135672 FoP_duplication PF13865.1 g50674.t1 - 2.9 8.3 6.4 4.4 7.8 4.4 1.3 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:131398-131661 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~131398-131661 Elf1 PF05129.8 g39553.t1 - 0.0031 17.1 0 0.0031 17.1 0 2.3 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:244691-246271 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~244691-246271 Vir_act_alpha_C PF10400.4 g28522.t1 - 0.074 13.4 1.8 0.19 12.1 0.1 2 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:247092-247457 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~247092-247457 Rsm1 PF08600.5 g85769.t1 - 0.072 12.9 0.4 0.092 12.6 0.3 1.2 1 0 0 1 1 1 0 Rsm1-like | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:10522-10791 Augustus predicted protein sequence Tomato scaffold2818_contigs=1~10522-10791 Lipoprotein_20 PF13942.1 g71731.t1 - 0.086 12.3 1.5 0.11 12 1.1 1.1 1 0 0 1 1 1 0 YfhG lipoprotein | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:59726-60040 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~59726-60040 Herpes_US12 PF05363.7 g37951.t1 - 0.00051 20.4 0.3 0.0054 17.2 0 2.5 2 1 1 3 3 3 1 Herpesvirus US12 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:318017-318481 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~318017-318481 CAP_N PF01213.14 g50180.t1 - 0.06 12.6 6.4 0.072 12.3 4.5 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:126253-126699 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~126253-126699 Transposase_28 PF04195.7 g63362.t1 - 0.0099 15.1 0 1.1 8.5 0 2.2 2 0 0 2 2 2 2 Putative gypsy type transposon | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:417110-417751 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~417110-417751 ACR_tran PF00873.14 g53117.t1 - 0.075 10.4 0.1 0.081 10.3 0 1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:13553-13798 Augustus predicted protein sequence Tomato scaffold1675_contigs=9~13553-13798 FAM92 PF06730.6 g48285.t1 - 0.044 13.1 0.2 0.05 12.9 0.1 1.1 1 0 0 1 1 1 0 FAM92 protein | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:218944-219264 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~218944-219264 DUF2710 PF10921.3 g6875.t1 - 0.1 12.7 0 0.12 12.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:255647-256717 Augustus predicted protein sequence Tomato scaffold384_contigs=11~255647-256717 DUF3687 PF12459.3 g85089.t1 - 0.052 12.7 0.1 5.7 6.2 0 2.2 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:97862-98627 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~97862-98627 FH2 PF02181.18 g37850.t1 - 0.017 14 0 0.027 13.3 0 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:53814-54596 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~53814-54596 Colicin_Pyocin PF01320.13 g2073.t1 - 0.13 12.1 0.2 0.2 11.5 0.2 1.5 1 1 0 1 1 1 0 Colicin immunity protein / pyocin immunity protein | Ref_seq=scaffold224_contigs=2, transcript_loc=scaffold224_contigs=2:64942-65163 Augustus predicted protein sequence Tomato scaffold224_contigs=2~64942-65163 Tropomyosin_1 PF12718.2 g35359.t1 - 0.0049 16.7 3.7 0.0056 16.5 2.6 1.1 1 0 0 1 1 1 1 Tropomyosin like | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:170435-170800 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~170435-170800 CDC45 PF02724.9 g42710.t1 - 0.0039 15.3 9.2 0.004 15.2 6.4 1.3 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:125115-125885 Augustus predicted protein sequence Tomato scaffold1370_contigs=2~125115-125885 ATHILA PF03078.10 g44579.t1 - 0.0001 21 0 0.00011 20.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:258284-258592 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~258284-258592 Ovate PF04844.8 g53438.t1 - 0.076 12.8 0 0.13 12 0 1.4 1 0 0 1 1 1 0 Transcriptional repressor, ovate | Ref_seq=scaffold1690_contigs=25, transcript_loc=scaffold1690_contigs=25:601163-601429 Augustus predicted protein sequence Tomato scaffold1690_contigs=25~601163-601429 DUF641 PF04859.7 g43538.t1 - 0.002 17.8 0.9 0.003 17.3 0.6 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:231828-232816 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~231828-232816 Na_K-ATPase PF00287.13 g68790.t1 - 0.17 10.6 0 0.24 10.1 0 1.2 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain | Ref_seq=scaffold2227_contigs=6, transcript_loc=scaffold2227_contigs=6:43163-44153 Augustus predicted protein sequence Tomato scaffold2227_contigs=6~43163-44153 FrhB_FdhB_N PF04422.8 g37223.t1 - 0.12 12.2 0 0.2 11.5 0 1.3 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:51301-51778 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~51301-51778 DNA_ligase_A_N PF04675.9 g1835.t1 - 0.015 15.1 0.5 0.016 15 0.3 1 1 0 0 1 1 1 0 DNA ligase N terminus | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:214639-214872 Augustus predicted protein sequence Tomato scaffold217_contigs=3~214639-214872 Herpes_UL95 PF03038.9 g12678.t1 - 0.077 11.8 0 0.12 11.2 0 1.2 1 0 0 1 1 1 0 UL95 family | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:756166-759540 Augustus predicted protein sequence Tomato scaffold556_contigs=11~756166-759540 GP41 PF00517.12 g34573.t1 - 0.076 12.5 2.7 0.093 12.2 1.9 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:331192-331527 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~331192-331527 BPS PF08947.5 g79715.t1 - 0.037 13.6 0.1 0.065 12.8 0.1 1.4 1 0 0 1 1 1 0 BPS (Between PH and SH2) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:281524-282658 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~281524-282658 Lumazine_bd PF12870.2 g57463.t1 - 0.093 12.7 0 0.12 12.4 0 1.1 1 0 0 1 1 1 0 Lumazine-binding domain | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:161872-162195 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~161872-162195 Trypan_PARP PF05887.6 g26784.t1 - 0.021 14.6 20.4 0.23 11.2 8.3 2.4 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold960_contigs=13, transcript_loc=scaffold960_contigs=13:47171-49110 Augustus predicted protein sequence Tomato scaffold960_contigs=13~47171-49110 DBD_Tnp_Mut PF03108.10 g58963.t1 - 5.5E-011 41.8 0.6 9.1E-011 41.1 0.4 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:23340-23984 Augustus predicted protein sequence Tomato scaffold1886_contigs=2~23340-23984 TFIIA PF03153.8 g56953.t1 - 0.028 14.3 12.3 0.03 14.2 8.5 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:133795-134109 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~133795-134109 Spore_coat_CotO PF14153.1 g34079.t1 - 0.000012 24.8 12.1 0.000015 24.5 8.4 1.2 1 0 0 1 1 1 1 Spore coat protein CotO | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:341122-342302 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~341122-342302 Prim-Pol PF09250.6 g31398.t1 - 0.061 13.3 0.1 0.088 12.7 0.1 1.2 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:185808-186380 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~185808-186380 Haem_bd PF14376.1 g44485.t1 - 0.1 12.2 0 16 5.1 0 2.2 2 0 0 2 2 2 0 Haem-binding domain | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:81752-82270 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~81752-82270 fn1 PF00039.13 g46570.t1 - 0.075 12.8 0.1 0.14 11.9 0 1.4 1 0 0 1 1 1 0 Fibronectin type I domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:492825-494800 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~492825-494800 DUF641 PF04859.7 g74984.t1 - 0.0016 18.1 2.3 0.0026 17.5 1.6 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:64944-65735 Augustus predicted protein sequence Tomato scaffold2581_contigs=30~64944-65735 AAA_10 PF12846.2 g5475.t1 - 0.023 14.1 0 0.028 13.8 0 1.1 1 0 0 1 1 1 0 AAA-like domain | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:26093-26500 Augustus predicted protein sequence Tomato scaffold329_contigs=2~26093-26500 DUF4643 PF15485.1 g86822.t1 - 6.7 6 13.8 0.16 11.3 2.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4643) | Ref_seq=scaffold2898_contigs=1, transcript_loc=scaffold2898_contigs=1:1404-2095 Augustus predicted protein sequence Tomato scaffold2898_contigs=1~1404-2095 Myc_N PF01056.13 g36445.t1 - 0.17 11 5.3 0.11 11.6 2.4 1.4 1 1 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:583735-584782 Augustus predicted protein sequence Tomato scaffold1193_contigs=15~583735-584782 DUF4611 PF15387.1 g72364.t1 - 0.041 14 0.9 0.095 12.8 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1216788-1217402 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1216788-1217402 TSKS PF15358.1 g57386.t1 - 0.033 12.3 1 0.037 12.2 0.7 1.2 1 0 0 1 1 1 0 Testis-specific serine kinase substrate | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:395408-395977 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~395408-395977 YopE_N PF09020.5 g16427.t1 - 0.064 13.2 0 0.11 12.5 0 1.3 1 0 0 1 1 1 0 YopE, N terminal | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:61661-62080 Augustus predicted protein sequence Tomato scaffold671_contigs=7~61661-62080 GTSE1_N PF15259.1 g75490.t1 - 0.0095 15.8 0.1 0.011 15.6 0.1 1.1 1 0 0 1 1 1 1 G-2 and S-phase expressed 1 | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:149702-150088 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~149702-150088 MOR2-PAG1_N PF14222.1 g71812.t1 - 0.036 12.7 0.2 0.04 12.6 0.2 1.1 1 0 0 1 1 1 0 Cell morphogenesis N-terminal | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:72258-72740 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~72258-72740 LZ_Tnp_IS481 PF13011.1 g68440.t1 - 0.0061 16.8 1.5 0.0095 16.2 1 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:200459-200983 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~200459-200983 RVT_3 PF13456.1 g64860.t1 - 0.064 13 0.3 0.11 12.2 0 1.5 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:195953-199029 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~195953-199029 SNARE PF05739.14 g38898.t1 - 0.027 14.1 0.2 0.096 12.3 0.1 1.9 2 0 0 2 2 2 0 SNARE domain | Ref_seq=scaffold1256_contigs=5, transcript_loc=scaffold1256_contigs=5:9872-10159 Augustus predicted protein sequence Tomato scaffold1256_contigs=5~9872-10159 Transposase_28 PF04195.7 g84712.t1 - 0.000015 24.4 0.1 0.000024 23.6 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:1618-6042 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~1618-6042 RAI16-like PF10257.4 g77869.t1 - 0.0071 15.3 5 0.011 14.7 3.4 1.2 1 0 0 1 1 1 1 Retinoic acid induced 16-like protein | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:656056-656970 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~656056-656970 DUF1347 PF07079.6 g79792.t1 - 0.077 11.1 0.1 0.33 9 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:621425-622078 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~621425-622078 DNAP_B_exo_N PF08452.5 g24577.t1 - 0.012 14.9 2.3 3 7.1 0.1 2.4 2 0 0 2 2 2 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:107547-107855 Augustus predicted protein sequence Tomato scaffold888_contigs=4~107547-107855 DUF4611 PF15387.1 g4945.t1 - 0.025 14.7 1.2 0.049 13.7 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:21813-23951 Augustus predicted protein sequence Tomato scaffold312_contigs=3~21813-23951 PI-PLC-X PF00388.14 g10346.t1 - 0.067 12.5 0 0.1 11.9 0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:11903-12250 Augustus predicted protein sequence Tomato scaffold495_contigs=2~11903-12250 DBINO PF13892.1 g38653.t1 - 0.0007 19.6 5.2 0.00073 19.5 3.6 1.1 1 0 0 1 1 1 1 DNA-binding domain | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:34327-34581 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~34327-34581 DUF3318 PF11780.3 g7333.t1 - 0.094 12.2 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) | Ref_seq=scaffold393_contigs=8, transcript_loc=scaffold393_contigs=8:234600-234896 Augustus predicted protein sequence Tomato scaffold393_contigs=8~234600-234896 TPR_MLP1_2 PF07926.7 g11182.t1 - 0.48 10.1 7.9 0.81 9.4 5.5 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:14298-15437 Augustus predicted protein sequence Tomato scaffold519_contigs=1~14298-15437 Trypan_PARP PF05887.6 g67350.t1 - 8.5 6.1 15.4 13 5.6 10.7 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:38959-41684 Augustus predicted protein sequence Tomato scaffold2182_contigs=7~38959-41684 DUF3859 PF12975.2 g6138.t1 - 0.12 12 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) | Ref_seq=scaffold352_contigs=11, transcript_loc=scaffold352_contigs=11:100745-101095 Augustus predicted protein sequence Tomato scaffold352_contigs=11~100745-101095 Uds1 PF15456.1 g31489.t1 - 0.011 15.7 1.7 0.013 15.4 1.2 1.2 1 0 0 1 1 1 0 Up-regulated During Septation | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:17032-17483 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~17032-17483 PBP_sp32 PF07222.7 g72527.t1 - 0.036 13.2 1.4 0.043 12.9 1 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:68566-69324 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~68566-69324 Tropomyosin PF00261.15 g73891.t1 - 0.06 12.4 1.1 0.11 11.5 0.8 1.4 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:111562-112215 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~111562-112215 Prolamin_like PF05617.6 g52789.t1 - 0.0023 18 4.1 0.0049 16.9 2.8 1.8 1 1 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:844848-845174 Augustus predicted protein sequence Tomato scaffold1647_contigs=32~844848-845174 K1377 PF15352.1 g24916.t1 - 0.03 12.2 1 0.032 12.1 0.7 1 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:80980-81934 Augustus predicted protein sequence Tomato scaffold904_contigs=3~80980-81934 AcylCoA_DH_N PF12418.3 g68273.t1 - 0.52 10 2.8 0.82 9.4 0.6 2.3 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase N terminal | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:86425-86739 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~86425-86739 HTH_33 PF13592.1 g56493.t1 - 0.06 12.8 0.7 11 5.6 0 3.1 3 0 0 3 3 3 0 Winged helix-turn helix | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:123882-125149 Augustus predicted protein sequence Tomato scaffold1809_contigs=8~123882-125149 RNA_pol_3_Rpc31 PF11705.3 g41605.t1 - 0.48 10.3 5.4 0.46 10.3 3.8 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold1337_contigs=2, transcript_loc=scaffold1337_contigs=2:1-223 Augustus predicted protein sequence Tomato scaffold1337_contigs=2~1-223 DUF1985 PF09331.6 g64968.t1 - 0.042 13.6 0 0.047 13.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:125039-125392 Augustus predicted protein sequence Tomato scaffold2105_contigs=7~125039-125392 DUF1204 PF06721.6 g23437.t1 - 0.2 10.8 0.8 0.25 10.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1204) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:199884-200323 Augustus predicted protein sequence Tomato scaffold859_contigs=6~199884-200323 NAM-associated PF14303.1 g687.t1 - 0.0012 19.1 5.1 0.0018 18.5 3.6 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:123730-124173 Augustus predicted protein sequence Tomato scaffold95_contigs=9~123730-124173 CENP-W PF15510.1 g22237.t1 - 0.041 13.8 0.9 0.074 13 0.6 1.4 1 0 0 1 1 1 0 Centromere kinetochore component W | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:157229-157720 Augustus predicted protein sequence Tomato scaffold825_contigs=10~157229-157720 HHH_2 PF12826.2 g40582.t1 - 0.016 15 0.1 0.065 13.1 0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:161147-162374 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~161147-162374 CDC45 PF02724.9 g68772.t1 - 0.12 10.4 8.1 0.2 9.6 5.6 1.3 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:303389-304461 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~303389-304461 DUF1652 PF07865.6 g1038.t1 - 0.059 12.9 0 0.09 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) | Ref_seq=scaffold185_contigs=2, transcript_loc=scaffold185_contigs=2:10053-10394 Augustus predicted protein sequence Tomato scaffold185_contigs=2~10053-10394 DUF347 PF03988.7 g52459.t1 - 0.008 16 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Repeat of Unknown Function (DUF347) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:97077-98374 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~97077-98374 DUF1800 PF08811.6 g82592.t1 - 0.071 12 0.3 0.077 11.9 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1800) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:172264-172563 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~172264-172563 RNase_H2-Ydr279 PF09468.5 g30494.t1 - 0.059 12.5 3.5 0.097 11.8 2.5 1.3 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:70643-72371 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~70643-72371 RVT_3 PF13456.1 g73847.t1 - 0.0000038 26.5 0 0.0000051 26.1 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2511_contigs=22, transcript_loc=scaffold2511_contigs=22:86350-86780 Augustus predicted protein sequence Tomato scaffold2511_contigs=22~86350-86780 Ribosomal_S3_C PF00189.15 g25670.t1 - 0.025 14.7 0 0.045 13.9 0 1.4 1 0 0 1 1 1 0 Ribosomal protein S3, C-terminal domain | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:166330-170302 Augustus predicted protein sequence Tomato scaffold930_contigs=4~166330-170302 APG6 PF04111.7 g39581.t1 - 0.058 12.4 1.2 0.066 12.2 0.8 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:321993-322256 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~321993-322256 DUF2808 PF10989.3 g2930.t1 - 0.056 13 0.2 0.065 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:134527-135395 Augustus predicted protein sequence Tomato scaffold257_contigs=2~134527-135395 PadR PF03551.9 g53110.t1 - 0.13 12 0.1 5.6 6.7 0 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:2635-2928 Augustus predicted protein sequence Tomato scaffold1675_contigs=9~2635-2928 zf-BED PF02892.10 g16457.t1 - 0.00033 20.3 1.1 0.00053 19.6 0.7 1.4 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:161266-163986 Augustus predicted protein sequence Tomato scaffold671_contigs=7~161266-163986 LRRNT_2 PF08263.7 g76299.t1 - 0.23 11.4 1.6 0.37 10.7 1.1 1.4 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold2622_contigs=9, transcript_loc=scaffold2622_contigs=9:20077-20325 Augustus predicted protein sequence Tomato scaffold2622_contigs=9~20077-20325 DUF936 PF06075.7 g71860.t1 - 0.13 11.1 0.1 1.3 7.8 0.1 2 2 0 0 2 2 2 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:85633-90602 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~85633-90602 BHD_3 PF10405.4 g73297.t1 - 0.059 13 0 0.12 12 0 1.5 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 3 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:44352-44838 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~44352-44838 Dickkopf_N PF04706.7 g66618.t1 - 1.8 8.8 10.1 3.5 7.8 7 1.6 1 0 0 1 1 1 0 Dickkopf N-terminal cysteine-rich region | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:240463-240765 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~240463-240765 HCaRG PF07258.9 g24332.t1 - 0.0021 17.6 0.1 0.0032 17 0 1.3 1 0 0 1 1 1 1 HCaRG protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:183087-186114 Augustus predicted protein sequence Tomato scaffold880_contigs=9~183087-186114 FlxA PF14282.1 g23153.t1 - 0.39 10.6 9.4 1.2 9 0.6 2.3 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:22262-23602 Augustus predicted protein sequence Tomato scaffold850_contigs=10~22262-23602 DUF3487 PF11990.3 g62729.t1 - 0.1 12 0.2 1 8.7 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:546356-546802 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~546356-546802 Gln-synt_C PF00120.19 g84746.t1 - 0.028 13.5 0.9 0.043 12.9 0.6 1.5 1 1 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:115144-116855 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~115144-116855 Tautomerase PF01361.16 g54923.t1 - 0.039 13.5 0.3 0.46 10.1 0 2.4 2 0 0 2 2 2 0 Tautomerase enzyme | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:207768-210395 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~207768-210395 DUF3275 PF11679.3 g84578.t1 - 0.22 11.1 2.5 0.28 10.8 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:112957-113343 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~112957-113343 DUF1985 PF09331.6 g30448.t1 - 0.0000042 26.6 0 0.0000065 26 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:519985-524696 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~519985-524696 MULE PF10551.4 g67025.t1 - 0.051 13.7 0 0.098 12.8 0 1.5 1 0 0 1 1 1 0 MULE transposase domain | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:531483-533705 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~531483-533705 TNF PF00229.13 g54979.t1 - 0.083 12.4 0 0.089 12.3 0 1.2 1 0 0 1 1 1 0 TNF(Tumour Necrosis Factor) family | Ref_seq=scaffold1731_contigs=1, transcript_loc=scaffold1731_contigs=1:57725-58015 Augustus predicted protein sequence Tomato scaffold1731_contigs=1~57725-58015 HMA PF00403.21 g84618.t1 - 0.0098 16 0 0.015 15.4 0 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain | Ref_seq=scaffold2775_contigs=1, transcript_loc=scaffold2775_contigs=1:77905-78427 Augustus predicted protein sequence Tomato scaffold2775_contigs=1~77905-78427 Lentiviral_Tat PF02998.9 g38791.t1 - 0.0037 17 0.3 2.9 7.7 0 2.2 2 0 0 2 2 2 2 Lentiviral Tat protein | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:41042-42767 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~41042-42767 Toxin_32 PF08120.6 g73496.t1 - 1.5 8.5 7.5 9.3 5.9 0.6 2.4 2 0 0 2 2 2 0 Tamulustoxin family | Ref_seq=scaffold2470_contigs=4, transcript_loc=scaffold2470_contigs=4:19720-21265 Augustus predicted protein sequence Tomato scaffold2470_contigs=4~19720-21265 ELK PF03789.8 g81319.t1 - 7.7 6.4 7.3 0.23 11.2 0.8 1.7 2 0 0 2 2 2 0 ELK domain | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:327089-329109 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~327089-329109 Ribosomal_L28 PF00830.14 g7423.t1 - 0.04 13.7 0 0.068 13 0 1.3 1 0 0 1 1 1 0 Ribosomal L28 family | Ref_seq=scaffold397_contigs=5, transcript_loc=scaffold397_contigs=5:1-978 Augustus predicted protein sequence Tomato scaffold397_contigs=5~1-978 Trypan_PARP PF05887.6 g21682.t1 - 6.9 6.4 18.5 0.9 9.3 10 1.6 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:152374-156339 Augustus predicted protein sequence Tomato scaffold810_contigs=11~152374-156339 Apolipoprotein PF01442.13 g52460.t1 - 0.00069 19.1 11.4 0.00072 19.1 6.8 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:100146-101467 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~100146-101467 Herpes_U34 PF04541.8 g29653.t1 - 0.11 11.3 0.2 0.27 10 0.2 1.7 1 1 0 1 1 1 0 Herpesvirus virion protein U34 | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:26026-27532 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~26026-27532 Toxin_24 PF08094.6 g75041.t1 - 0.065 12.8 4.4 0.14 11.7 3 1.6 1 1 0 1 1 1 0 Conotoxin TVIIA/GS family | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:9149-9400 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~9149-9400 Siah-Interact_N PF09032.6 g84922.t1 - 0.11 12.6 0.2 0.11 12.6 0.1 1.9 2 0 0 2 2 2 0 Siah interacting protein, N terminal | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:109875-111108 Augustus predicted protein sequence Tomato scaffold2784_contigs=1~109875-111108 ATHILA PF03078.10 g15628.t1 - 0.00034 19.3 0 0.41 9.1 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:242403-243724 Augustus predicted protein sequence Tomato scaffold635_contigs=5~242403-243724 zf-CCHC PF00098.18 g7400.t1 - 0.00028 20.6 0.8 0.00028 20.6 0.5 2.8 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:187292-187660 Augustus predicted protein sequence Tomato scaffold395_contigs=7~187292-187660 DUF384 PF04064.8 g83239.t1 - 0.15 11.6 0.1 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF384) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:29424-29750 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~29424-29750 RVT_3 PF13456.1 g63589.t1 - 0.016 14.9 0 0.02 14.6 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:609371-610018 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~609371-610018 zf-CCHC_3 PF13917.1 g42052.t1 - 0.04 13.6 0.2 0.08 12.6 0.2 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:315338-315688 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~315338-315688 DUF169 PF02596.10 g7308.t1 - 1.2 8.4 4 18 4.6 0.1 2.6 3 0 0 3 3 3 0 Uncharacterised ArCR, COG2043 | Ref_seq=scaffold393_contigs=8, transcript_loc=scaffold393_contigs=8:57587-58930 Augustus predicted protein sequence Tomato scaffold393_contigs=8~57587-58930 HrpF PF06266.7 g53740.t1 - 0.096 12.8 0.1 0.17 12 0.1 1.4 1 0 0 1 1 1 0 HrpF protein | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:158254-159373 Augustus predicted protein sequence Tomato scaffold1702_contigs=7~158254-159373 DBINO PF13892.1 g43497.t1 - 0.89 9.5 13.9 0.062 13.3 5.7 2 2 0 0 2 2 2 0 DNA-binding domain | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:54410-58180 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~54410-58180 HrpA_pilin PF09589.5 g63099.t1 - 0.07 13.5 1 0.087 13.2 0.7 1.3 1 0 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:187237-187674 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~187237-187674 Pox_Ag35 PF03286.9 g642.t1 - 0.0094 15.4 2.3 0.011 15.2 1.6 1 1 0 0 1 1 1 1 Pox virus Ag35 surface protein | Ref_seq=scaffold87_contigs=1, transcript_loc=scaffold87_contigs=1:3296-3592 Augustus predicted protein sequence Tomato scaffold87_contigs=1~3296-3592 Jnk-SapK_ap_N PF09744.4 g275.t1 - 0.0018 18.3 1.6 0.0022 17.9 1.1 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:54728-57512 Augustus predicted protein sequence Tomato scaffold17_contigs=4~54728-57512 HALZ PF02183.13 g38753.t1 - 0.042 13.5 0.4 0.17 11.6 0.3 2 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:232019-232450 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~232019-232450 DUF1682 PF07946.9 g48698.t1 - 0.0056 15.5 7.7 0.0051 15.6 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:792755-793255 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~792755-793255 DUF4165 PF13752.1 g67292.t1 - 0.028 14.1 0 0.038 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4165) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:66027-68220 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~66027-68220 RVT_3 PF13456.1 g5130.t1 - 0.00034 20.3 0 0.002 17.8 0 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:447641-447988 Augustus predicted protein sequence Tomato scaffold315_contigs=11~447641-447988 MHCassoc_trimer PF08831.5 g60775.t1 - 0.03 14.1 1.4 0.58 10 0.5 2.9 3 0 0 3 3 3 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:275258-276357 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~275258-276357 Acyl-CoA_dh_C PF12806.2 g78495.t1 - 0.12 12.2 0 0.14 12 0 1.1 1 0 0 1 1 1 0 Acetyl-CoA dehydrogenase C-terminal like | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:125914-126464 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~125914-126464 DUF1979 PF09322.5 g19460.t1 - 0.0061 16.1 0 0.012 15.2 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1979) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:615864-616340 Augustus predicted protein sequence Tomato scaffold751_contigs=13~615864-616340 DUF919 PF06034.6 g68997.t1 - 0.081 12.5 1.3 0.15 11.7 0.9 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:30659-31030 Augustus predicted protein sequence Tomato scaffold2245_contigs=4~30659-31030 Auts2 PF15336.1 g67687.t1 - 0.00019 21.5 6.3 2.4 8.1 0.1 3.3 3 0 0 3 3 3 3 Autism susceptibility gene 2 protein | Ref_seq=scaffold2188_contigs=14, transcript_loc=scaffold2188_contigs=14:103025-107103 Augustus predicted protein sequence Tomato scaffold2188_contigs=14~103025-107103 HECA PF15353.1 g14237.t1 - 0.062 13 3.6 0.075 12.7 2.5 1.1 1 0 0 1 1 1 0 Headcase protein family homologue | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:467346-467612 Augustus predicted protein sequence Tomato scaffold586_contigs=6~467346-467612 KRBA1 PF15287.1 g36580.t1 - 0.69 9.3 2.7 0.42 9.9 0.2 1.9 2 0 0 2 2 2 0 KRBA1 family repeat | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:12116-12430 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~12116-12430 CAP_N PF01213.14 g72767.t1 - 0.79 8.9 4.2 1.1 8.4 2.9 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:21984-23577 Augustus predicted protein sequence Tomato scaffold2426_contigs=10~21984-23577 RXT2_N PF08595.6 g23965.t1 - 0.0084 15.9 4.3 0.013 15.3 2.9 1.2 1 0 0 1 1 1 1 RXT2-like, N-terminal | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:268689-270589 Augustus predicted protein sequence Tomato scaffold874_contigs=5~268689-270589 zf-dskA_traR PF01258.12 g32529.t1 - 0.029 14.1 0.4 0.045 13.4 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger | Ref_seq=scaffold1106_contigs=3, transcript_loc=scaffold1106_contigs=3:30013-30473 Augustus predicted protein sequence Tomato scaffold1106_contigs=3~30013-30473 DUF3987 PF13148.1 g57694.t1 - 0.4 9.2 18.8 0.38 9.2 13 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:302087-302287 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~302087-302287 HOOK PF05622.7 g40886.t1 - 0.12 10.1 0.1 0.14 9.9 0.1 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:19301-19561 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~19301-19561 RR_TM4-6 PF06459.7 g16894.t1 - 7.1 6.4 10.4 9.6 6 7.2 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:93072-93455 Augustus predicted protein sequence Tomato scaffold686_contigs=3~93072-93455 Na_trans_assoc PF06512.8 g44553.t1 - 0.063 13.2 0.1 0.064 13.2 0.1 1.1 1 0 0 1 1 1 0 Sodium ion transport-associated | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:168268-168851 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~168268-168851 DUF4316 PF14195.1 g76356.t1 - 0.031 14.3 1.5 0.043 13.8 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4316) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:157258-159049 Augustus predicted protein sequence Tomato scaffold2624_contigs=4~157258-159049 Tropomyosin_1 PF12718.2 g47915.t1 - 0.079 12.8 0 0.13 12 0 1.3 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:57457-58215 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~57457-58215 Hexapep PF00132.19 g54157.t1 - 0.015 14.8 0.1 0.026 14 0 1.5 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:156617-156829 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~156617-156829 DUF4383 PF14325.1 g33276.t1 - 0.00062 19.7 3.1 0.001 19 2.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4383) | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:136358-137063 Augustus predicted protein sequence Tomato scaffold1126_contigs=23~136358-137063 hEGF PF12661.2 g39845.t1 - 0.015 15.3 0.1 73 3.7 0 3.6 3 0 0 3 3 3 0 Human growth factor-like EGF | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:78409-81680 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~78409-81680 ER-remodelling PF14755.1 g8937.t1 - 0.13 12.2 3.2 0.18 11.8 2.2 1.2 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:1-203 Augustus predicted protein sequence Tomato scaffold443_contigs=11~1-203 Ripply PF14998.1 g44478.t1 - 1.1 9.4 3.4 0.58 10.3 0.7 1.9 2 0 0 2 2 2 0 Transcription Regulator | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:48425-55672 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~48425-55672 zf-met2 PF12907.2 g31177.t1 - 0.018 14.9 1.7 0.036 14 1.2 1.5 1 0 0 1 1 1 0 Zinc-binding | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:155274-157698 Augustus predicted protein sequence Tomato scaffold1064_contigs=7~155274-157698 MRP-S32 PF10210.4 g53543.t1 - 0.063 13.6 0.3 0.079 13.2 0.2 1.2 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 | Ref_seq=scaffold1693_contigs=10, transcript_loc=scaffold1693_contigs=10:268843-269115 Augustus predicted protein sequence Tomato scaffold1693_contigs=10~268843-269115 Tim54 PF11711.3 g28552.t1 - 0.012 14.2 2.9 0.013 14 2 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:372218-372736 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~372218-372736 AhpC-TSA PF00578.16 g81604.t1 - 0.12 12 0 1.9 8.1 0 2.2 1 1 0 1 1 1 0 AhpC/TSA family | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:241634-242125 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~241634-242125 DUF4482 PF14818.1 g5140.t1 - 0.04 14.5 1 0.058 14 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:473339-473826 Augustus predicted protein sequence Tomato scaffold315_contigs=11~473339-473826 RIX1 PF08167.7 g79894.t1 - 0.1 12.2 0 0.12 12 0 1.2 1 0 0 1 1 1 0 rRNA processing/ribosome biogenesis | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:171680-173315 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~171680-173315 ATHILA PF03078.10 g54219.t1 - 0.0015 17.2 0 0.0018 16.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:55356-56665 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~55356-56665 Colicin PF01024.14 g73478.t1 - 0.41 10.2 5.9 0.47 10 4.1 1 1 0 0 1 1 1 0 Colicin pore forming domain | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:125236-125481 Augustus predicted protein sequence Tomato scaffold2465_contigs=4~125236-125481 DUF1196 PF06709.6 g58132.t1 - 0.017 15 3.2 3.3 7.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1196) | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:122956-123696 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~122956-123696 DUF842 PF05811.8 g51847.t1 - 0.068 12.6 1.2 0.075 12.4 0.8 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:77744-77992 Augustus predicted protein sequence Tomato scaffold1625_contigs=4~77744-77992 FLYWCH_N PF15423.1 g18861.t1 - 0.12 12.5 0.7 0.19 11.8 0.5 1.3 1 0 0 1 1 1 0 FLYWCH-type zinc finger-containing protein | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:738088-738714 Augustus predicted protein sequence Tomato scaffold731_contigs=13~738088-738714 zf-CCHC_4 PF14392.1 g32265.t1 - 0.008 15.8 0.6 0.018 14.7 0.4 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:412762-413040 Augustus predicted protein sequence Tomato scaffold1101_contigs=16~412762-413040 DUF1917 PF08939.5 g78684.t1 - 0.036 13.7 1.4 0.042 13.5 1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:87828-88052 Augustus predicted protein sequence Tomato scaffold2674_contigs=11~87828-88052 ATHILA PF03078.10 g42275.t1 - 0.000000018 33.3 0 0.000056 21.9 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:35055-35705 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~35055-35705 ER-remodelling PF14755.1 g33729.t1 - 0.0099 15.9 0.4 0.015 15.3 0.3 1.4 1 0 0 1 1 1 1 Intracellular membrane remodeller | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:169497-170700 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~169497-170700 GAS PF13851.1 g26489.t1 - 0.12 11.5 1 0.15 11.2 0.7 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:195930-197914 Augustus predicted protein sequence Tomato scaffold949_contigs=2~195930-197914 DUF4246 PF14033.1 g39684.t1 - 0.11 11.1 0 0.11 11 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4246) | Ref_seq=scaffold1275_contigs=3, transcript_loc=scaffold1275_contigs=3:15118-15474 Augustus predicted protein sequence Tomato scaffold1275_contigs=3~15118-15474 IncA PF04156.9 g45673.t1 - 8.3 5.9 10.4 15 5.1 7.2 1.4 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:346743-347787 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~346743-347787 DUF1176 PF06674.6 g33905.t1 - 0.058 12.4 0.2 0.066 12.3 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1176) | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:29512-33578 Augustus predicted protein sequence Tomato scaffold1137_contigs=5~29512-33578 RVT_3 PF13456.1 g85808.t1 - 0.000054 22.8 0 0.000081 22.3 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2820_contigs=1, transcript_loc=scaffold2820_contigs=1:1229-1555 Augustus predicted protein sequence Tomato scaffold2820_contigs=1~1229-1555 Afi1 PF07792.7 g84039.t1 - 0.11 12.5 5.1 0.17 11.8 3.5 1.3 1 0 0 1 1 1 0 Docking domain of Afi1 for Arf3 in vesicle trafficking | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:194487-195617 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~194487-195617 DUF2153 PF09921.4 g16074.t1 - 0.06 12.9 0.1 0.089 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2153) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:218151-218767 Augustus predicted protein sequence Tomato scaffold654_contigs=10~218151-218767 zf-CCHC PF00098.18 g19170.t1 - 0.061 13.2 2 0.091 12.7 1.4 1.2 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:157573-157887 Augustus predicted protein sequence Tomato scaffold746_contigs=6~157573-157887 Chordopox_G3 PF06129.7 g62921.t1 - 0.15 12.2 0.2 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus G3 protein | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:51050-51576 Augustus predicted protein sequence Tomato scaffold2015_contigs=7~51050-51576 Nup54 PF13874.1 g61977.t1 - 0.025 14.2 3.6 0.06 13 2.5 1.7 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 | Ref_seq=scaffold1981_contigs=8, transcript_loc=scaffold1981_contigs=8:170544-171767 Augustus predicted protein sequence Tomato scaffold1981_contigs=8~170544-171767 Pox_E2-like PF04497.7 g13834.t1 - 0.0089 14.1 0.1 0.011 13.7 0 1 1 0 0 1 1 1 1 Poxviridae protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:335983-336894 Augustus predicted protein sequence Tomato scaffold582_contigs=8~335983-336894 UPF0561 PF10573.4 g73022.t1 - 0.15 11.9 2.2 6.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold2436_contigs=4, transcript_loc=scaffold2436_contigs=4:9266-9790 Augustus predicted protein sequence Tomato scaffold2436_contigs=4~9266-9790 Ycf1 PF05758.7 g31553.t1 - 0.77 7.4 12.5 0.73 7.4 8.7 1 1 0 0 1 1 1 0 Ycf1 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:175997-176422 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~175997-176422 tRNA-synt_1 PF00133.17 g35859.t1 - 0.14 10.1 0 0.18 9.7 0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:17362-21210 Augustus predicted protein sequence Tomato scaffold1184_contigs=2~17362-21210 DUF547 PF04784.9 g54777.t1 - 0.07 13 0 0.082 12.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF547 | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:5728-6093 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~5728-6093 DUF2357 PF09823.4 g77543.t1 - 0.018 14.1 0 5.5 6 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2357) | Ref_seq=scaffold2658_contigs=12, transcript_loc=scaffold2658_contigs=12:7326-10903 Augustus predicted protein sequence Tomato scaffold2658_contigs=12~7326-10903 AF1Q PF15017.1 g36066.t1 - 0.059 13.2 1.8 0.1 12.4 1.3 1.4 1 0 0 1 1 1 0 Drug resistance and apoptosis regulator | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:237821-238156 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~237821-238156 ATHILA PF03078.10 g65893.t1 - 2.2E-009 36.4 0 0.00000021 29.9 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:47830-48740 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~47830-48740 HALZ PF02183.13 g64486.t1 - 0.27 10.9 4.6 0.16 11.7 0.7 2.4 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:57263-58077 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~57263-58077 RNA_pol_Rpb5_C PF01191.14 g7538.t1 - 0.2 11.2 0.7 2.8 7.6 0 2 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:105588-105827 Augustus predicted protein sequence Tomato scaffold404_contigs=9~105588-105827 MRP-S26 PF14943.1 g10444.t1 - 0.011 15.2 6.6 0.02 14.4 4.6 1.4 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:245257-245748 Augustus predicted protein sequence Tomato scaffold498_contigs=12~245257-245748 Diphtheria_C PF02763.9 g24662.t1 - 0.025 14 0.1 0.047 13.1 0 1.4 1 0 0 1 1 1 0 Diphtheria toxin, C domain | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:28405-33081 Augustus predicted protein sequence Tomato scaffold893_contigs=2~28405-33081 Transposase_22 PF02994.9 g36946.t1 - 0.086 11.3 0.1 0.13 10.7 0 1.2 1 0 0 1 1 1 0 L1 transposable element | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:221293-223859 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~221293-223859 NYD-SP28_assoc PF14775.1 g27905.t1 - 0.57 9.9 2.8 0.7 9.6 1.4 1.5 2 0 0 2 2 2 0 Sperm tail C-terminal domain | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:69009-69467 Augustus predicted protein sequence Tomato scaffold987_contigs=6~69009-69467 zf-CCHC PF00098.18 g20269.t1 - 0.01 15.7 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold769_contigs=2, transcript_loc=scaffold769_contigs=2:27018-27766 Augustus predicted protein sequence Tomato scaffold769_contigs=2~27018-27766 Clusterin PF01093.12 g48821.t1 - 0.0048 15.7 0.4 0.0073 15.1 0.3 1.3 1 0 0 1 1 1 1 Clusterin | Ref_seq=scaffold1508_contigs=4, transcript_loc=scaffold1508_contigs=4:25858-26431 Augustus predicted protein sequence Tomato scaffold1508_contigs=4~25858-26431 DUF4200 PF13863.1 g48170.t1 - 0.1 12.5 2 0.14 12 1.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:99520-99813 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~99520-99813 EMP24_GP25L PF01105.19 g60613.t1 - 0.000068 22.6 0 0.045 13.4 0 2.1 1 1 1 2 2 2 2 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:82614-83126 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~82614-83126 Nucleoplasmin PF03066.10 g10183.t1 - 0.085 12.3 0.8 0.14 11.6 0.5 1.4 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:74941-76482 Augustus predicted protein sequence Tomato scaffold486_contigs=3~74941-76482 SWIM PF04434.12 g19399.t1 - 0.033 13.6 0.1 0.068 12.6 0 1.5 1 0 0 1 1 1 0 SWIM zinc finger | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:361757-365929 Augustus predicted protein sequence Tomato scaffold751_contigs=13~361757-365929 ATG16 PF08614.6 g30055.t1 - 0.046 13.5 1.9 0.064 13 1.3 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:371961-372580 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~371961-372580 Gly-rich_Ago1 PF12764.2 g49350.t1 - 0.9 10.2 3 0.67 10.6 0.8 1.7 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1536_contigs=31, transcript_loc=scaffold1536_contigs=31:22210-22710 Augustus predicted protein sequence Tomato scaffold1536_contigs=31~22210-22710 RNase_P_p30 PF01876.11 g10034.t1 - 0.05 12.8 0 0.051 12.8 0 1 1 0 0 1 1 1 0 RNase P subunit p30 | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:249805-250077 Augustus predicted protein sequence Tomato scaffold481_contigs=9~249805-250077 FH2 PF02181.18 g43331.t1 - 0.0038 16.1 0.2 0.0046 15.8 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:63235-63648 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~63235-63648 Phage_AlpA PF05930.7 g65298.t1 - 0.0039 16.8 0 0.0078 15.9 0 1.4 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:55592-60943 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~55592-60943 Alb1 PF09135.6 g75456.t1 - 0.09 13.4 0 27 5.4 0 2.7 2 2 0 2 2 2 0 Alb1 | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:41499-42257 Augustus predicted protein sequence Tomato scaffold2597_contigs=14~41499-42257 Hum_adeno_E3A PF05393.6 g59553.t1 - 0.00083 18.9 0.2 0.8 9.4 0 3 3 0 0 3 3 3 2 Human adenovirus early E3A glycoprotein | Ref_seq=scaffold1927_contigs=30, transcript_loc=scaffold1927_contigs=30:1381-4168 Augustus predicted protein sequence Tomato scaffold1927_contigs=30~1381-4168 MAP65_ASE1 PF03999.7 g19616.t1 - 0.032 12.8 1.4 0.033 12.7 1 1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:204408-205183 Augustus predicted protein sequence Tomato scaffold756_contigs=8~204408-205183 CENP-B_dimeris PF09026.5 g13791.t1 - 0.00052 20.1 4.2 0.00074 19.7 2.9 1.2 1 0 0 1 1 1 1 Centromere protein B dimerisation domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:196811-197331 Augustus predicted protein sequence Tomato scaffold582_contigs=8~196811-197331 GP41 PF00517.12 g72112.t1 - 0.046 13.2 0.5 0.05 13.1 0.4 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:138488-138793 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~138488-138793 IncA PF04156.9 g50027.t1 - 0.019 14.5 11.1 0.03 13.9 7.7 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:167100-167594 Augustus predicted protein sequence Tomato scaffold1552_contigs=5~167100-167594 Vpu PF00558.14 g13929.t1 - 0.14 11.7 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 Vpu protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:587662-588054 Augustus predicted protein sequence Tomato scaffold582_contigs=8~587662-588054 IP_trans PF02121.13 g12533.t1 - 0.0084 15.3 0.1 0.01 15 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:179503-179868 Augustus predicted protein sequence Tomato scaffold556_contigs=11~179503-179868 TMEM171 PF15471.1 g80798.t1 - 0.52 9 1.8 0.74 8.5 1.2 1.3 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:406525-408150 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~406525-408150 TROVE PF05731.6 g42145.t1 - 0.048 12.4 0.3 0.053 12.2 0.2 1.1 1 0 0 1 1 1 0 TROVE domain | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:150612-151115 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~150612-151115 Alpha_L_fucos PF01120.12 g37475.t1 - 0.11 11.4 0 0.13 11.1 0 1.1 1 0 0 1 1 1 0 Alpha-L-fucosidase | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:367014-367547 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~367014-367547 DUF1347 PF07079.6 g50980.t1 - 0.02 13 0.1 0.026 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:6110-6634 Augustus predicted protein sequence Tomato scaffold1596_contigs=1~6110-6634 IclR PF01614.13 g18176.t1 - 0.13 11.9 0.3 0.2 11.3 0.2 1.2 1 0 0 1 1 1 0 Bacterial transcriptional regulator | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:625172-626558 Augustus predicted protein sequence Tomato scaffold720_contigs=9~625172-626558 DGF-1_4 PF11024.3 g67264.t1 - 0.81 10.1 4.8 1.9 8.9 1.4 2.5 1 1 1 2 2 2 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 | Ref_seq=scaffold2180_contigs=5, transcript_loc=scaffold2180_contigs=5:2170-2427 Augustus predicted protein sequence Tomato scaffold2180_contigs=5~2170-2427 DUF3006 PF11213.3 g79924.t1 - 0.084 12.6 0.3 0.12 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:107465-107854 Augustus predicted protein sequence Tomato scaffold2704_contigs=20~107465-107854 DUF3713 PF12506.3 g60733.t1 - 0.022 14.8 0.3 0.027 14.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3713) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:145584-145898 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~145584-145898 DUF4283 PF14111.1 g77615.t1 - 0.029 13.4 0 0.29 10.2 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:177711-178106 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~177711-178106 DUF743 PF05332.6 g16525.t1 - 0.032 14.1 0.3 0.041 13.8 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF743) | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:187935-188404 Augustus predicted protein sequence Tomato scaffold672_contigs=7~187935-188404 DUF1168 PF06658.7 g37805.t1 - 0.11 12 9.3 0.13 11.8 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) | Ref_seq=scaffold1239_contigs=6, transcript_loc=scaffold1239_contigs=6:79423-79773 Augustus predicted protein sequence Tomato scaffold1239_contigs=6~79423-79773 PB1 PF00564.19 g69388.t1 - 0.061 12.9 5.5 2.9 7.6 0 2.9 4 0 0 4 4 4 0 PB1 domain | Ref_seq=scaffold2274_contigs=4, transcript_loc=scaffold2274_contigs=4:2283-3161 Augustus predicted protein sequence Tomato scaffold2274_contigs=4~2283-3161 bZIP_1 PF00170.16 g19369.t1 - 0.0018 18.1 17.9 0.0027 17.6 1.4 2.8 3 0 0 3 3 3 2 bZIP transcription factor | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:234678-236165 Augustus predicted protein sequence Tomato scaffold751_contigs=13~234678-236165 DNA_ligase_ZBD PF03119.11 g27260.t1 - 0.032 13.9 0.3 0.23 11.1 0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:168555-168875 Augustus predicted protein sequence Tomato scaffold974_contigs=15~168555-168875 Big_4 PF07532.6 g75768.t1 - 0.00099 18.5 0.6 1.4 8.4 0 2.2 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 4) | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:58272-58789 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~58272-58789 RNase_P_pop3 PF08228.6 g59551.t1 - 0.072 12.9 0 0.078 12.8 0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:197836-199555 Augustus predicted protein sequence Tomato scaffold1926_contigs=8~197836-199555 DDE_Tnp_4 PF13359.1 g28772.t1 - 0.092 12.3 0 0.1 12.2 0 1.1 1 0 0 1 1 1 0 DDE superfamily endonuclease | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:258326-258670 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~258326-258670 PLAC8 PF04749.12 g85069.t1 - 0.013 16 0.8 8.7 6.9 0 2.1 1 1 0 2 2 2 0 PLAC8 family | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:53883-55614 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~53883-55614 DUF2681 PF10883.3 g45061.t1 - 0.053 13.7 2.6 0.06 13.5 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:771265-771501 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~771265-771501 YaaC PF14175.1 g34912.t1 - 0.01 14.8 0.1 0.011 14.7 0.1 1 1 0 0 1 1 1 0 YaaC-like Protein | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:200904-201269 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~200904-201269 L27_1 PF09058.5 g50494.t1 - 0.1 12.5 0.1 0.4 10.5 0 2 2 0 0 2 2 2 0 L27_1 | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:354486-360674 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~354486-360674 TraQ PF09679.5 g41126.t1 - 0.17 11.8 1 0.43 10.5 0.7 1.6 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) | Ref_seq=scaffold1324_contigs=9, transcript_loc=scaffold1324_contigs=9:175511-175951 Augustus predicted protein sequence Tomato scaffold1324_contigs=9~175511-175951 Filo_glycop PF01611.11 g28073.t1 - 0.14 10.9 2.7 0.15 10.8 1.8 1.2 1 0 0 1 1 1 0 Filovirus glycoprotein | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:212710-213177 Augustus predicted protein sequence Tomato scaffold990_contigs=6~212710-213177 DUF2626 PF11117.3 g65238.t1 - 0.074 13.4 0 0.38 11.1 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2626) | Ref_seq=scaffold2121_contigs=3, transcript_loc=scaffold2121_contigs=3:4668-6074 Augustus predicted protein sequence Tomato scaffold2121_contigs=3~4668-6074 CCDC71L PF15374.1 g34255.t1 - 0.044 13.1 0 0.091 12 0 1.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 71L | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:276225-276509 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~276225-276509 Daxx PF03344.10 g3009.t1 - 0.18 10.2 18.2 0.082 11.3 10.1 1.8 2 0 0 2 2 2 0 Daxx Family | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:340525-341679 Augustus predicted protein sequence Tomato scaffold257_contigs=2~340525-341679 MULE PF10551.4 g35945.t1 - 0.016 15.3 0 0.019 15 0 1.3 1 0 0 1 1 1 0 MULE transposase domain | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:9935-10460 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~9935-10460 NAM-associated PF14303.1 g21611.t1 - 0.00092 19.5 7.3 0.0011 19.2 5.1 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold803_contigs=6, transcript_loc=scaffold803_contigs=6:1801-2325 Augustus predicted protein sequence Tomato scaffold803_contigs=6~1801-2325 CALCOCO1 PF07888.6 g53844.t1 - 0.017 13.4 0.2 0.017 13.4 0.1 1.6 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:288485-292152 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~288485-292152 zf-BED PF02892.10 g75946.t1 - 0.035 13.8 0.8 0.079 12.7 0.6 1.7 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2614_contigs=14, transcript_loc=scaffold2614_contigs=14:64541-65485 Augustus predicted protein sequence Tomato scaffold2614_contigs=14~64541-65485 DUF4377 PF14302.1 g68919.t1 - 0.0017 18.1 0.1 2.1 8.2 0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4377) | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:99902-100495 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~99902-100495 COBRA1 PF06209.8 g52929.t1 - 0.0049 15.5 0.8 0.0049 15.5 0.5 1.2 1 0 0 1 1 1 1 Cofactor of BRCA1 (COBRA1) | Ref_seq=scaffold1664_contigs=9, transcript_loc=scaffold1664_contigs=9:117768-118178 Augustus predicted protein sequence Tomato scaffold1664_contigs=9~117768-118178 BBS2_C PF14782.1 g8288.t1 - 0.24 9.9 5.6 0.25 9.8 3.9 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:276426-276929 Augustus predicted protein sequence Tomato scaffold423_contigs=9~276426-276929 HemY_N PF07219.8 g28506.t1 - 0.1 12.1 0.5 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 HemY protein N-terminus | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:188061-188408 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~188061-188408 bZIP_1 PF00170.16 g84655.t1 - 0.0062 16.4 6.2 0.67 9.9 0.2 2.3 1 1 1 2 2 2 2 bZIP transcription factor | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:80671-81090 Augustus predicted protein sequence Tomato scaffold2776_contigs=1~80671-81090 DUF1682 PF07946.9 g40377.t1 - 0.96 8.2 9.3 1.3 7.7 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:12785-13754 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~12785-13754 DUF1776 PF08643.5 g12847.t1 - 0.084 11.9 0.1 0.091 11.8 0 1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:66349-67303 Augustus predicted protein sequence Tomato scaffold561_contigs=10~66349-67303 IncA PF04156.9 g5762.t1 - 0.033 13.7 5.5 0.05 13.2 3.8 1.3 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:92576-95763 Augustus predicted protein sequence Tomato scaffold338_contigs=10~92576-95763 CAF-1_p150 PF11600.3 g34805.t1 - 0.00036 19.9 23.3 0.00046 19.6 16.2 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:251944-252543 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~251944-252543 DoxX PF07681.7 g2612.t1 - 0.55 10.6 2.6 0.92 9.9 1.8 1.4 1 0 0 1 1 1 0 DoxX | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:87951-88446 Augustus predicted protein sequence Tomato scaffold247_contigs=8~87951-88446 zf-CCHC PF00098.18 g37029.t1 - 0.0084 15.9 5.1 0.0084 15.9 3.5 2.8 3 0 0 3 3 3 2 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:40442-40690 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~40442-40690 YTH PF04146.10 g46491.t1 - 0.0032 17 0 0.0041 16.7 0 1.1 1 0 0 1 1 1 1 YT521-B-like domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:273685-273939 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~273685-273939 NTR2 PF15458.1 g68652.t1 - 0.022 13.9 0.2 0.039 13.1 0.1 1.4 1 1 0 1 1 1 0 Nineteen complex-related protein 2 | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:37373-38262 Augustus predicted protein sequence Tomato scaffold2223_contigs=8~37373-38262 WTF PF03303.8 g69939.t1 - 0.079 12.3 0.5 0.099 12 0.3 1.1 1 0 0 1 1 1 0 WTF protein | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:51293-51965 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~51293-51965 CYSTM PF12734.2 g59653.t1 - 0.086 12.9 0.1 0.15 12.1 0 1.3 1 0 0 1 1 1 0 Cysteine-rich TM module stress tolerance | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:42345-43034 Augustus predicted protein sequence Tomato scaffold1930_contigs=25~42345-43034 IlvGEDA_leader PF08046.6 g46998.t1 - 0.065 12.3 0.5 0.065 12.3 0.3 1.7 2 0 0 2 2 2 0 IlvGEDA operon leader peptide | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:51489-51863 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~51489-51863 PTH2 PF01981.11 g40301.t1 - 0.071 12.7 0 0.098 12.3 0 1.2 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:86640-87518 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~86640-87518 HiaBD2 PF15403.1 g33680.t1 - 0.11 12.6 0 0.14 12.2 0 1.3 1 0 0 1 1 1 0 HiaBD2_N domain of Trimeric autotransporter adhesin (GIN) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:476325-476558 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~476325-476558 DUF674 PF05056.7 g53463.t1 - 0.000067 21.7 0 0.000067 21.7 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF674) | Ref_seq=scaffold1691_contigs=8, transcript_loc=scaffold1691_contigs=8:39974-41653 Augustus predicted protein sequence Tomato scaffold1691_contigs=8~39974-41653 CDC37_N PF03234.9 g23401.t1 - 0.051 13.9 0.7 0.071 13.4 0.5 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:86641-87916 Augustus predicted protein sequence Tomato scaffold859_contigs=6~86641-87916 DUF188 PF02639.9 g22236.t1 - 0.1 12 0 0.12 11.7 0 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:155091-156870 Augustus predicted protein sequence Tomato scaffold825_contigs=10~155091-156870 CENP-F_leu_zip PF10473.4 g34204.t1 - 0.0062 16.3 5.7 0.71 9.7 0.4 2.4 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:32665-35664 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~32665-35664 DUF2837 PF10997.3 g39894.t1 - 0.022 13.9 0 0.024 13.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2837) | Ref_seq=scaffold1280_contigs=6, transcript_loc=scaffold1280_contigs=6:81316-82421 Augustus predicted protein sequence Tomato scaffold1280_contigs=6~81316-82421 GON PF08685.6 g31932.t1 - 0.015 15.1 2.6 0.015 15.1 1.8 1.1 1 0 0 1 1 1 0 GON domain | Ref_seq=scaffold1096_contigs=1, transcript_loc=scaffold1096_contigs=1:7107-7397 Augustus predicted protein sequence Tomato scaffold1096_contigs=1~7107-7397 Chon_Sulph_att PF06566.6 g35178.t1 - 0.0005 19.7 11 0.0005 19.7 6.6 1.8 2 0 0 2 2 2 1 Chondroitin sulphate attachment domain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:522839-524328 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~522839-524328 Trypan_PARP PF05887.6 g78428.t1 - 0.19 11.5 3.4 0.22 11.3 2.3 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:213874-214925 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~213874-214925 DUF2207 PF09972.4 g24091.t1 - 0.017 13.7 0 0.02 13.5 0 1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:77268-77850 Augustus predicted protein sequence Tomato scaffold876_contigs=13~77268-77850 Abhydrolase_9_N PF15420.1 g75604.t1 - 0.13 12 0 0.17 11.5 0 1.2 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:1925-2398 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~1925-2398 TFIIA PF03153.8 g7941.t1 - 3.4 7.4 5.9 4.2 7.1 4.1 1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:92266-94281 Augustus predicted protein sequence Tomato scaffold411_contigs=3~92266-94281 Robl_LC7 PF03259.12 g47003.t1 - 0.094 12.2 0 0.17 11.4 0 1.4 1 0 0 1 1 1 0 Roadblock/LC7 domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:84080-86510 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~84080-86510 Terminase_5 PF06056.7 g2431.t1 - 0.29 10.7 2.2 2 8 0.2 2.3 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:134005-135228 Augustus predicted protein sequence Tomato scaffold237_contigs=4~134005-135228 DUF3678 PF12435.3 g77607.t1 - 0.00046 19.6 7.8 0.34 10.4 0 3.1 2 1 0 2 2 2 2 Protein of unknown function (DUF3678) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:144352-144928 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~144352-144928 Herpes_U30 PF04523.8 g65370.t1 - 0.16 9.4 1.1 0.16 9.3 0.8 1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:307536-308512 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~307536-308512 Transposase_24 PF03004.9 g49636.t1 - 0.001 18.9 2.4 0.56 10 1.5 2.1 1 1 1 2 2 2 2 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:238313-238978 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~238313-238978 ResB PF05140.9 g76740.t1 - 0.031 12.8 0.1 0.037 12.5 0 1.1 1 0 0 1 1 1 0 ResB-like family | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:560475-562501 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~560475-562501 Minor_capsid_3 PF12691.2 g74480.t1 - 6.1E-022 77.7 0 0.35 10.5 0 9.9 3 2 7 10 10 10 10 Minor capsid protein from bacteriophage | Ref_seq=scaffold2550_contigs=9, transcript_loc=scaffold2550_contigs=9:4373-8854 Augustus predicted protein sequence Tomato scaffold2550_contigs=9~4373-8854 Trypan_PARP PF05887.6 g11041.t1 - 0.83 9.4 16.7 1.2 8.9 11.6 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:52906-53453 Augustus predicted protein sequence Tomato scaffold512_contigs=2~52906-53453 IFP_35_N PF07334.8 g2170.t1 - 0.031 14.2 1.5 0.031 14.2 1 1.9 2 1 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:54167-54556 Augustus predicted protein sequence Tomato scaffold228_contigs=4~54167-54556 HALZ PF02183.13 g19578.t1 - 0.024 14.3 0.2 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:94990-96405 Augustus predicted protein sequence Tomato scaffold756_contigs=8~94990-96405 TPP_enzyme_C PF02775.16 g43360.t1 - 0.13 11.8 0 0.15 11.6 0 1.1 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:163733-164544 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~163733-164544 YdfZ PF14001.1 g56260.t1 - 0.0026 17.9 0.2 2.8 8.2 0 2.3 2 0 0 2 2 2 2 YdfZ protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:94165-95273 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~94165-95273 HAUS4 PF14735.1 g29563.t1 - 0.028 13.7 3.2 0.039 13.2 2.2 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:58836-60886 Augustus predicted protein sequence Tomato scaffold1029_contigs=5~58836-60886 ORC6 PF05460.8 g38818.t1 - 0.16 11 2.8 0.17 10.9 1.9 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:164638-165021 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~164638-165021 DUF505 PF04458.7 g87864.t1 - 0.089 10.8 0 0.097 10.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) | Ref_seq=scaffold4563_contigs=1, transcript_loc=scaffold4563_contigs=1:1-228 Augustus predicted protein sequence Tomato scaffold4563_contigs=1~1-228 Xpo1 PF08389.7 g70350.t1 - 0.04 13.8 0.1 0.047 13.6 0.1 1.1 1 0 0 1 1 1 0 Exportin 1-like protein | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:624496-624831 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~624496-624831 bZIP_2 PF07716.10 g62225.t1 - 0.046 13.5 1.5 0.071 12.9 1.1 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:210995-211417 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~210995-211417 PA28_alpha PF02251.13 g87794.t1 - 0.0011 19 0 0.0014 18.7 0 1.2 1 0 0 1 1 1 1 Proteasome activator pa28 alpha subunit | Ref_seq=scaffold4135_contigs=1, transcript_loc=scaffold4135_contigs=1:1-706 Augustus predicted protein sequence Tomato scaffold4135_contigs=1~1-706 Herpes_UL46 PF03387.9 g79403.t1 - 0.0026 16 0 0.003 15.8 0 1.1 1 0 0 1 1 1 1 Herpesvirus UL46 protein | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:84736-85182 Augustus predicted protein sequence Tomato scaffold2694_contigs=28~84736-85182 Lentivirus_VIF PF05851.6 g55234.t1 - 0.03 13 0.1 0.04 12.6 0.1 1.2 1 0 0 1 1 1 0 Lentivirus virion infectivity factor (VIF) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:495016-496685 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~495016-496685 DUF342 PF03961.8 g57845.t1 - 0.092 11.1 1 0.11 10.9 0.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:67908-68375 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~67908-68375 Viral_DNA_bp PF00747.12 g35.t1 - 0.084 10 0.1 0.098 9.8 0.1 1 1 0 0 1 1 1 0 ssDNA binding protein | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:4355-4687 Augustus predicted protein sequence Tomato scaffold3_contigs=2~4355-4687 ATHILA PF03078.10 g66608.t1 - 0.0000088 24.5 0 0.0000094 24.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:208440-208838 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~208440-208838 DUF3624 PF12292.3 g46405.t1 - 0.066 13.6 0.4 0.1 13 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:4319-4588 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~4319-4588 DUF4219 PF13961.1 g20558.t1 - 0.00063 19 0 0.00098 18.4 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1118901-1119143 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1118901-1119143 DUF2673 PF10880.3 g28681.t1 - 0.061 13.3 0.2 2.9 8 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2673) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:15011-22477 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~15011-22477 PolC_DP2 PF03833.8 g16341.t1 - 0.006 14.3 0.8 0.0065 14.2 0.5 1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:285990-286316 Augustus predicted protein sequence Tomato scaffold668_contigs=10~285990-286316 PSI_PsaE PF02427.12 g87629.t1 - 0.15 11.4 0 0.24 10.7 0 1.3 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE | Ref_seq=scaffold3477_contigs=1, transcript_loc=scaffold3477_contigs=1:1-1916 Augustus predicted protein sequence Tomato scaffold3477_contigs=1~1-1916 IIGP PF05049.8 g44090.t1 - 0.075 11.8 0.2 0.078 11.7 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:59332-59727 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~59332-59727 Exonuc_X-T_C PF08411.5 g48513.t1 - 0.0062 15.6 0.7 0.009 15 0.5 1.1 1 0 0 1 1 1 1 Exonuclease C-terminal | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:143565-144086 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~143565-144086 Inhibitor_Mig-6 PF11555.3 g33822.t1 - 6.4 7.2 13.7 0.15 12.4 2.8 2.2 2 0 0 2 2 2 0 EGFR receptor inhibitor Mig-6 | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:118682-118912 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~118682-118912 DUF1495 PF07381.6 g52253.t1 - 0.14 11.8 0 20 4.9 0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold1636_contigs=5, transcript_loc=scaffold1636_contigs=5:9719-10319 Augustus predicted protein sequence Tomato scaffold1636_contigs=5~9719-10319 Acetyltransf_6 PF13480.1 g78203.t1 - 0.044 13.7 1.3 0.052 13.4 0.9 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:531038-531406 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~531038-531406 MRP-S26 PF14943.1 g48063.t1 - 0.0035 16.9 4.8 0.0035 16.9 3.3 1.1 1 0 0 1 1 1 1 Mitochondrial ribosome subunit S26 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:532589-532879 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~532589-532879 DUF4234 PF14018.1 g41001.t1 - 0.11 12.2 3 0.23 11.2 2.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) | Ref_seq=scaffold1319_contigs=5, transcript_loc=scaffold1319_contigs=5:90966-91779 Augustus predicted protein sequence Tomato scaffold1319_contigs=5~90966-91779 GlpM PF06942.7 g71856.t1 - 0.021 15.1 0.4 0.028 14.6 0.3 1.2 1 0 0 1 1 1 0 GlpM protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:77669-78364 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~77669-78364 Selenoprotein_S PF06936.6 g22118.t1 - 0.024 14.1 0.1 0.027 13.9 0.1 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold820_contigs=1, transcript_loc=scaffold820_contigs=1:18763-20143 Augustus predicted protein sequence Tomato scaffold820_contigs=1~18763-20143 RNA_pol_Rpc4 PF05132.9 g2551.t1 - 0.25 11.3 3.2 0.29 11.1 2.2 1.1 1 0 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:93719-94015 Augustus predicted protein sequence Tomato scaffold243_contigs=2~93719-94015 U-box PF04564.10 g54973.t1 - 0.034 14.1 1.3 8.7 6.3 0 2.9 3 0 0 3 3 3 0 U-box domain | Ref_seq=scaffold1731_contigs=1, transcript_loc=scaffold1731_contigs=1:22068-26256 Augustus predicted protein sequence Tomato scaffold1731_contigs=1~22068-26256 Plug_translocon PF10559.4 g34174.t1 - 0.14 11.6 0.6 25 4.4 0 3.4 2 1 1 3 3 3 0 Plug domain of Sec61p | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:77642-83937 Augustus predicted protein sequence Tomato scaffold1144_contigs=4~77642-83937 DUF4081 PF13312.1 g63428.t1 - 0.062 13.2 0.2 0.1 12.5 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4081) | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:280426-282430 Augustus predicted protein sequence Tomato scaffold2035_contigs=8~280426-282430 YwiC PF14256.1 g59302.t1 - 0.0017 18.3 7.2 0.0024 17.9 5 1.2 1 0 0 1 1 1 1 YwiC-like protein | Ref_seq=scaffold1912_contigs=2, transcript_loc=scaffold1912_contigs=2:43384-45746 Augustus predicted protein sequence Tomato scaffold1912_contigs=2~43384-45746 ATHILA PF03078.10 g15327.t1 - 0.058 11.9 0.2 0.82 8.1 0.2 2 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:127983-128867 Augustus predicted protein sequence Tomato scaffold624_contigs=9~127983-128867 zf-CCHC_3 PF13917.1 g79356.t1 - 0.00033 20.3 1.5 0.073 12.8 1.1 2.8 1 1 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:84733-85848 Augustus predicted protein sequence Tomato scaffold2693_contigs=8~84733-85848 ATHILA PF03078.10 g75714.t1 - 1.9E-011 43.2 0.3 2.3E-011 42.9 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:56637-57056 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~56637-57056 PQ-loop PF04193.9 g21591.t1 - 0.21 11.1 1.2 1.3 8.5 0 2.2 1 1 1 2 2 2 0 PQ loop repeat | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:60286-60692 Augustus predicted protein sequence Tomato scaffold802_contigs=3~60286-60692 DUF1582 PF07621.6 g62260.t1 - 1.2 9.2 4 9 6.4 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1582) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:302758-302973 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~302758-302973 RAP-1 PF03085.10 g27807.t1 - 0.03 13.6 0.1 0.035 13.4 0 1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:766035-766352 Augustus predicted protein sequence Tomato scaffold983_contigs=13~766035-766352 TT_ORF2 PF02957.10 g44934.t1 - 0.21 12.3 3.1 0.22 12.2 0.8 1.9 1 1 1 2 2 2 0 TT viral ORF2 | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:225549-226225 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~225549-226225 ATHILA PF03078.10 g40565.t1 - 2.4E-010 39.6 0 0.000000004 35.5 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:99287-100461 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~99287-100461 SBP56 PF05694.6 g4027.t1 - 0.0042 15.6 0 0.0047 15.4 0 1 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) | Ref_seq=scaffold286_contigs=6, transcript_loc=scaffold286_contigs=6:123592-128154 Augustus predicted protein sequence Tomato scaffold286_contigs=6~123592-128154 CENP-Q PF13094.1 g65477.t1 - 0.031 14.3 4.4 0.03 14.3 3 1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:166123-166383 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~166123-166383 SURF6 PF04935.7 g2966.t1 - 0.048 12.9 1.9 0.054 12.7 1.3 1 1 0 0 1 1 1 0 Surfeit locus protein 6 | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:228422-228709 Augustus predicted protein sequence Tomato scaffold257_contigs=2~228422-228709 LTV PF04180.9 g19116.t1 - 0.068 12.6 0.3 0.11 12 0.2 1.3 1 0 0 1 1 1 0 Low temperature viability protein | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:222023-225817 Augustus predicted protein sequence Tomato scaffold744_contigs=4~222023-225817 Rabaptin PF03528.10 g79143.t1 - 0.049 13.5 0 0.049 13.5 0 1.2 1 0 0 1 1 1 0 Rabaptin | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:32679-32930 Augustus predicted protein sequence Tomato scaffold2685_contigs=11~32679-32930 zf-CCHC PF00098.18 g29856.t1 - 0.009 15.9 0.8 0.019 14.8 0.6 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:88842-89447 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~88842-89447 PSCyt3 PF07627.6 g43193.t1 - 0.12 12.2 0.1 0.18 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1588) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:36901-37936 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~36901-37936 ATHILA PF03078.10 g78666.t1 - 0.0000023 26.4 0 0.0000029 26.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:23469-26395 Augustus predicted protein sequence Tomato scaffold2674_contigs=11~23469-26395 TOBE PF03459.12 g30534.t1 - 0.11 12.6 0.1 8.9 6.5 0 2.4 2 0 0 2 2 2 0 TOBE domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:37519-37902 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~37519-37902 Transposase_1 PF01359.13 g44722.t1 - 0.012 15.3 0 0.016 14.9 0 1.1 1 0 0 1 1 1 0 Transposase (partial DDE domain) | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:122324-122806 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~122324-122806 DUF2370 PF10176.4 g52998.t1 - 0.085 12.1 0.1 0.11 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:31535-34930 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~31535-34930 Transposase_28 PF04195.7 g74065.t1 - 0.2 10.9 1.4 0.43 9.8 1 1.6 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:358198-361332 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~358198-361332 VGCC_beta4Aa_N PF12052.3 g28794.t1 - 0.096 12.5 0.9 0.14 11.9 0.6 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:340853-341353 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~340853-341353 Trypan_PARP PF05887.6 g68203.t1 - 4.2 7.1 15 5.9 6.7 10.4 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:123245-124269 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~123245-124269 EMI PF07546.8 g51318.t1 - 0.1 13 0.2 0.1 13 0.1 1.6 2 0 0 2 2 2 0 EMI domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:68994-69826 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~68994-69826 TPR_MLP1_2 PF07926.7 g9613.t1 - 0.052 13.2 1.1 0.065 12.9 0.1 1.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:198275-200740 Augustus predicted protein sequence Tomato scaffold462_contigs=7~198275-200740 DUF1985 PF09331.6 g62198.t1 - 4.3E-009 36.3 0.1 0.000000013 34.7 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:82137-85980 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~82137-85980 ATHILA PF03078.10 g56248.t1 - 7.3E-015 54.5 0.3 0.024 13.2 0 4.1 4 0 0 4 4 4 4 ATHILA ORF-1 family | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:61288-65083 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~61288-65083 AIG2 PF06094.7 g31603.t1 - 0.069 13.6 0 0.086 13.3 0 1.1 1 0 0 1 1 1 0 AIG2-like family | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:2526-2762 Augustus predicted protein sequence Tomato scaffold1081_contigs=4~2526-2762 Cnl2_NKP2 PF09447.5 g11384.t1 - 0.071 12.8 0.4 0.41 10.3 0.1 2.1 1 1 1 2 2 2 0 Cnl2/NKP2 family protein | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:473077-473346 Augustus predicted protein sequence Tomato scaffold523_contigs=15~473077-473346 Chitin_synth_1 PF01644.12 g54513.t1 - 0.15 11.8 0.2 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 Chitin synthase | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:96007-96672 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~96007-96672 zf-CCHC PF00098.18 g1902.t1 - 0.0024 17.7 1.5 0.0037 17.1 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:53018-53332 Augustus predicted protein sequence Tomato scaffold219_contigs=6~53018-53332 RVP_2 PF08284.6 g69253.t1 - 5.6E-010 39.2 0.1 0.000000001 38.4 0.1 1.4 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:226844-229497 Augustus predicted protein sequence Tomato scaffold2263_contigs=12~226844-229497 DUF504 PF04457.7 g78234.t1 - 0.12 12.5 1.1 1.9 8.7 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF504) | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:605515-605859 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~605515-605859 MscS_porin PF12795.2 g39537.t1 - 0.055 12.7 0.5 0.076 12.3 0.3 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:177892-179443 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~177892-179443 HSBP1 PF06825.7 g22099.t1 - 1.4 8.5 4.6 16 5.1 0.1 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:40025-40631 Augustus predicted protein sequence Tomato scaffold819_contigs=1~40025-40631 DUF4201 PF13870.1 g19169.t1 - 0.007 15.8 0.8 0.011 15.1 0.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:156886-157386 Augustus predicted protein sequence Tomato scaffold746_contigs=6~156886-157386 DUF4636 PF15468.1 g74928.t1 - 0.015 14.7 1 0.026 14 0.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4636) | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:70411-70765 Augustus predicted protein sequence Tomato scaffold2578_contigs=10~70411-70765 p47_phox_C PF08944.6 g45384.t1 - 0.13 12.4 0.5 0.32 11.2 0 1.8 2 0 0 2 2 2 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:49284-49658 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~49284-49658 LZ_Tnp_IS66 PF13007.2 g26511.t1 - 2.5 8.8 4.5 4.3 8 0.1 2.3 2 0 0 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold950_contigs=3, transcript_loc=scaffold950_contigs=3:1022-1588 Augustus predicted protein sequence Tomato scaffold950_contigs=3~1022-1588 GARS_C PF02843.11 g50544.t1 - 0.036 14.2 0.3 1.9 8.7 0 2.1 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain | Ref_seq=scaffold1567_contigs=2, transcript_loc=scaffold1567_contigs=2:1-406 Augustus predicted protein sequence Tomato scaffold1567_contigs=2~1-406 RVT_3 PF13456.1 g75211.t1 - 6.3E-011 41.9 0 8.1E-011 41.5 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:854351-854647 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~854351-854647 TPR_MLP1_2 PF07926.7 g37359.t1 - 0.07 12.8 1.6 0.1 12.3 1.1 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:190506-193401 Augustus predicted protein sequence Tomato scaffold1217_contigs=8~190506-193401 Ste50p-SAM PF09235.5 g74169.t1 - 0.025 14.5 0.1 0.034 14.1 0.1 1.1 1 0 0 1 1 1 0 Ste50p, sterile alpha motif | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:148928-149403 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~148928-149403 mTERF PF02536.9 g6590.t1 - 0.00015 20.4 0 0.00018 20.2 0 1.1 1 0 0 1 1 1 1 mTERF | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:116220-118152 Augustus predicted protein sequence Tomato scaffold379_contigs=8~116220-118152 zf-CCHC PF00098.18 g45184.t1 - 0.00018 21.2 0.6 0.0003 20.5 0.4 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:305154-305864 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~305154-305864 DUF599 PF04654.7 g71622.t1 - 0.34 10 2.7 0.34 10 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF599 | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:56317-58426 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~56317-58426 DUF640 PF04852.7 g69099.t1 - 0.000013 25.3 0.1 0.78 9.9 0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF640) | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:88719-89766 Augustus predicted protein sequence Tomato scaffold2253_contigs=17~88719-89766 DUF2873 PF11395.3 g63062.t1 - 0.066 12.7 0.8 0.11 12 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:39721-41536 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~39721-41536 Fer4_19 PF06902.6 g77584.t1 - 0.084 12.7 0.2 0.13 12 0.1 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:81946-84364 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~81946-84364 Shugoshin_N PF07558.6 g39627.t1 - 0.073 12.7 0.3 0.14 11.8 0.2 1.4 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:535909-536948 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~535909-536948 H-kinase_dim PF02895.9 g42613.t1 - 0.012 15.8 0.4 0.017 15.4 0.3 1.2 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold1366_contigs=6, transcript_loc=scaffold1366_contigs=6:75969-76250 Augustus predicted protein sequence Tomato scaffold1366_contigs=6~75969-76250 Myb_DNA-binding PF00249.26 g17448.t1 - 0.054 13.5 0.7 11 6.1 0 2.2 2 0 0 2 2 2 0 Myb-like DNA-binding domain | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:44591-45120 Augustus predicted protein sequence Tomato scaffold707_contigs=5~44591-45120 DUF4219 PF13961.1 g50937.t1 - 0.0089 15.4 0.4 0.021 14.2 0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:6862-7185 Augustus predicted protein sequence Tomato scaffold1580_contigs=5~6862-7185 Presenilin PF01080.12 g3044.t1 - 0.062 12.1 3 0.075 11.8 2.1 1 1 0 0 1 1 1 0 Presenilin | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:106105-106569 Augustus predicted protein sequence Tomato scaffold258_contigs=4~106105-106569 TSLP PF15216.1 g29070.t1 - 0.012 15.2 0.6 0.021 14.5 0.5 1.4 1 1 0 1 1 1 0 Thymic stromal lymphopoietin | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:474128-474463 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~474128-474463 DBD_Tnp_Mut PF03108.10 g10789.t1 - 0.00000006 32.1 4.5 0.00000012 31.1 3.1 1.6 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:82903-83397 Augustus predicted protein sequence Tomato scaffold507_contigs=4~82903-83397 CENP-B_dimeris PF09026.5 g45282.t1 - 0.028 14.6 2.7 0.047 13.9 1.9 1.3 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:631970-635130 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~631970-635130 IER PF05760.7 g54810.t1 - 0.033 14.1 1.8 0.042 13.7 1.2 1 1 0 0 1 1 1 0 Immediate early response protein (IER) | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:113025-113573 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~113025-113573 UBN2_2 PF14227.1 g11036.t1 - 0.00078 18.9 0 0.001 18.6 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:39750-40459 Augustus predicted protein sequence Tomato scaffold512_contigs=2~39750-40459 CDI PF02234.14 g86984.t1 - 0.15 11.9 1 91 2.9 0 3.6 3 0 0 3 3 3 0 Cyclin-dependent kinase inhibitor | Ref_seq=scaffold2918_contigs=1, transcript_loc=scaffold2918_contigs=1:9832-11651 Augustus predicted protein sequence Tomato scaffold2918_contigs=1~9832-11651 zf-CCHC PF00098.18 g35625.t1 - 0.01 15.7 0.8 0.022 14.7 0.5 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1002631-1004274 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~1002631-1004274 DUF3543 PF12063.3 g79900.t1 - 0.08 12.1 0.1 0.09 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3543) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:204873-205127 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~204873-205127 YqcI_YcgG PF08892.6 g21979.t1 - 0.0013 18.3 0 0.0019 17.7 0 1.2 1 0 0 1 1 1 1 YqcI/YcgG family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:450950-454581 Augustus predicted protein sequence Tomato scaffold817_contigs=11~450950-454581 Retrotrans_gag PF03732.12 g46211.t1 - 0.068 13.2 0.1 7.5 6.7 0 2.3 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:539144-541282 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~539144-541282 DUF3670 PF12419.3 g79881.t1 - 0.061 12.7 0 0.1 12 0 1.3 1 0 0 1 1 1 0 SNF2 Helicase protein | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:127105-127815 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~127105-127815 Fis1_TPR_N PF14852.1 g49157.t1 - 0.045 13 0 0.069 12.4 0 1.3 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:31145-31498 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~31145-31498 zinc_ribbon_4 PF13717.1 g65512.t1 - 0.069 12.8 0 0.14 11.8 0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:33903-34277 Augustus predicted protein sequence Tomato scaffold2130_contigs=1~33903-34277 zf-RING_2 PF13639.1 g911.t1 - 0.002 17.9 1 0.0026 17.5 0.7 1.3 1 1 0 1 1 1 1 Ring finger domain | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:51019-51273 Augustus predicted protein sequence Tomato scaffold180_contigs=3~51019-51273 FAA_hydrolase PF01557.13 g29500.t1 - 0.066 12.6 0.3 0.63 9.4 0.2 2 1 1 1 2 2 2 0 Fumarylacetoacetate (FAA) hydrolase family | Ref_seq=scaffold1027_contigs=5, transcript_loc=scaffold1027_contigs=5:4133-6095 Augustus predicted protein sequence Tomato scaffold1027_contigs=5~4133-6095 Zn_Tnp_IS1595 PF12760.2 g32034.t1 - 0.096 12.5 1.4 0.22 11.3 0.6 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:170161-170436 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~170161-170436 QueC PF06508.8 g66177.t1 - 0.24 10.6 2.3 0.27 10.5 1.6 1.2 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:263-606 Augustus predicted protein sequence Tomato scaffold2154_contigs=6~263-606 BLVR PF06375.6 g2598.t1 - 0.041 13.7 6.1 0.04 13.7 4.2 1.2 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:21875-22201 Augustus predicted protein sequence Tomato scaffold247_contigs=8~21875-22201 Med1 PF10744.4 g22952.t1 - 0.14 10.8 0.2 0.18 10.5 0.2 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription subunit 1 | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:164335-166133 Augustus predicted protein sequence Tomato scaffold840_contigs=5~164335-166133 EIAV_Rev PF11129.3 g83515.t1 - 0.023 14.6 3.1 11 6 0 3.2 2 1 1 3 3 3 0 Rev protein of equine infectious anaemia virus | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:776219-780421 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~776219-780421 LEAP-2 PF07359.6 g24558.t1 - 0.014 15 0.1 0.02 14.5 0.1 1.2 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:56958-57308 Augustus predicted protein sequence Tomato scaffold888_contigs=4~56958-57308 FAM176 PF14851.1 g58881.t1 - 0.0069 16 0.1 0.0075 15.9 0 1 1 0 0 1 1 1 1 FAM176 family | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:70926-71216 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~70926-71216 ATHILA PF03078.10 g51031.t1 - 0.015 13.9 0 0.02 13.4 0 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:34131-35436 Augustus predicted protein sequence Tomato scaffold1605_contigs=5~34131-35436 DUF1682 PF07946.9 g68756.t1 - 0.0009 18.1 3.2 0.00097 18 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:226435-226962 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~226435-226962 CAF-1_p150 PF11600.3 g30364.t1 - 0.00017 21 33.3 0.00018 20.9 23.1 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:190002-190412 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~190002-190412 DUF1985 PF09331.6 g24041.t1 - 0.00000005 32.8 0.6 0.000000093 31.9 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:202340-205213 Augustus predicted protein sequence Tomato scaffold875_contigs=10~202340-205213 Bud13 PF09736.4 g56496.t1 - 0.0009 19.5 3.9 0.0012 19.1 2.7 1.2 1 0 0 1 1 1 1 Pre-mRNA-splicing factor of RES complex | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:13248-14239 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~13248-14239 Toxin_22 PF08092.6 g77565.t1 - 0.094 12.5 0.4 0.17 11.7 0.3 1.4 1 0 0 1 1 1 0 Magi peptide toxin family | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:17829-19636 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~17829-19636 TpcC PF12642.2 g57674.t1 - 0.019 14.4 1.3 0.027 14 0.9 1.2 1 0 0 1 1 1 0 Conjugative transposon protein TcpC | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:232178-232816 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~232178-232816 YdjO PF14169.1 g21569.t1 - 0.0082 15.5 0.1 0.025 14 0 1.8 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:73107-73820 Augustus predicted protein sequence Tomato scaffold801_contigs=2~73107-73820 LEA_6 PF10714.4 g80684.t1 - 0.022 14.5 0 0.033 13.9 0 1.3 1 1 0 1 1 1 0 Late embryogenesis abundant protein 18 | Ref_seq=scaffold2716_contigs=1, transcript_loc=scaffold2716_contigs=1:24076-24339 Augustus predicted protein sequence Tomato scaffold2716_contigs=1~24076-24339 UBN2 PF14223.1 g13753.t1 - 0.015 15.1 0.4 0.021 14.6 0.3 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:45180-47978 Augustus predicted protein sequence Tomato scaffold582_contigs=8~45180-47978 RRP14 PF15459.1 g69814.t1 - 0.047 13.7 3 0.16 12 2.1 1.9 1 0 0 1 1 1 0 60S ribosome biogenesis protein Rrp14 | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:52266-53635 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~52266-53635 DUF3391 PF11871.3 g69432.t1 - 0.085 13 0.2 0.12 12.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) | Ref_seq=scaffold2278_contigs=9, transcript_loc=scaffold2278_contigs=9:138145-138716 Augustus predicted protein sequence Tomato scaffold2278_contigs=9~138145-138716 DUF826 PF05696.6 g73272.t1 - 0.21 11.7 7.9 0.87 9.7 1.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF826) | Ref_seq=scaffold2446_contigs=1, transcript_loc=scaffold2446_contigs=1:644-1374 Augustus predicted protein sequence Tomato scaffold2446_contigs=1~644-1374 EF-hand_like PF09279.6 g25941.t1 - 0.0052 16.7 0 0.0076 16.2 0 1.2 1 0 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:30088-30429 Augustus predicted protein sequence Tomato scaffold941_contigs=6~30088-30429 RNF111_N PF15303.1 g20710.t1 - 0.079 12.4 0.2 0.082 12.4 0.1 1 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase Arkadia N-terminus | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:70504-70716 Augustus predicted protein sequence Tomato scaffold779_contigs=3~70504-70716 DUF4423 PF14394.1 g25444.t1 - 0.024 14.1 0.6 0.032 13.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:285244-285711 Augustus predicted protein sequence Tomato scaffold928_contigs=4~285244-285711 DUF4219 PF13961.1 g85897.t1 - 0.00022 20.5 0.3 0.00041 19.6 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:15177-16180 Augustus predicted protein sequence Tomato scaffold2827_contigs=1~15177-16180 Borrelia_P83 PF05262.6 g26079.t1 - 1.1 7.4 10 1.2 7.3 7 1 1 0 0 1 1 1 0 Borrelia P83/100 protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:401995-402372 Augustus predicted protein sequence Tomato scaffold942_contigs=10~401995-402372 Cupredoxin_1 PF13473.1 g61718.t1 - 0.042 13.7 0.5 0.1 12.5 0.3 1.7 1 0 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:219887-222747 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~219887-222747 DUF321 PF03778.8 g37491.t1 - 0.18 11.2 1.7 2.5 7.6 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF321) | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:429249-429735 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~429249-429735 YdjO PF14169.1 g15804.t1 - 0.058 12.8 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:80929-82891 Augustus predicted protein sequence Tomato scaffold644_contigs=2~80929-82891 Mnd1 PF03962.10 g11390.t1 - 0.091 12.4 0 0.1 12.2 0 1.1 1 0 0 1 1 1 0 Mnd1 family | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:506343-507118 Augustus predicted protein sequence Tomato scaffold523_contigs=15~506343-507118 DUF2205 PF10224.4 g8508.t1 - 0.041 13.4 0.2 0.057 12.9 0.1 1.2 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:36263-36478 Augustus predicted protein sequence Tomato scaffold428_contigs=8~36263-36478 UBN2 PF14223.1 g56351.t1 - 0.00000062 29.2 0.1 0.00000079 28.8 0.1 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:31946-32389 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~31946-32389 zf-BED PF02892.10 g87713.t1 - 0.000013 24.8 7.5 0.0066 16.1 0.5 2.9 2 0 0 2 2 2 2 BED zinc finger | Ref_seq=scaffold3719_contigs=1, transcript_loc=scaffold3719_contigs=1:1-1831 Augustus predicted protein sequence Tomato scaffold3719_contigs=1~1-1831 ATHILA PF03078.10 g57970.t1 - 0.051 12.1 0 0.053 12.1 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:168993-170857 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~168993-170857 DUF2939 PF11159.3 g86312.t1 - 0.14 12.3 0.4 0.27 11.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2939) | Ref_seq=scaffold2850_contigs=1, transcript_loc=scaffold2850_contigs=1:44612-46287 Augustus predicted protein sequence Tomato scaffold2850_contigs=1~44612-46287 zf-CCHC PF00098.18 g8179.t1 - 0.0049 16.7 1 0.0081 16 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:245493-247540 Augustus predicted protein sequence Tomato scaffold421_contigs=12~245493-247540 DegS PF05384.6 g5650.t1 - 0.0045 16.2 5.5 0.015 14.5 3.8 1.8 1 1 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:315362-316212 Augustus predicted protein sequence Tomato scaffold334_contigs=13~315362-316212 HALZ PF02183.13 g54766.t1 - 2.3 8 11 0.045 13.4 1.2 3.1 2 1 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:109560-110753 Augustus predicted protein sequence Tomato scaffold1728_contigs=6~109560-110753 Spc24 PF08286.6 g42948.t1 - 0.0000065 25.8 3.9 0.000013 24.9 2.7 1.5 1 0 0 1 1 1 1 Spc24 subunit of Ndc80 | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:48738-53030 Augustus predicted protein sequence Tomato scaffold1377_contigs=3~48738-53030 Corona_M PF01635.13 g41655.t1 - 0.094 11.6 0 0.11 11.4 0 1 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:82538-82822 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~82538-82822 Ribosomal_L36e PF01158.13 g58260.t1 - 0.039 13.8 0.7 0.86 9.5 0 2.4 2 1 0 2 2 2 0 Ribosomal protein L36e | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:15708-18262 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~15708-18262 Bclx_interact PF08945.5 g25178.t1 - 0.13 11.7 1.4 2 8 0 2.6 3 0 0 3 3 3 0 Bcl-x interacting, BH3 domain | Ref_seq=scaffold922_contigs=1, transcript_loc=scaffold922_contigs=1:17751-19570 Augustus predicted protein sequence Tomato scaffold922_contigs=1~17751-19570 DUF4391 PF14335.1 g27668.t1 - 0.023 14.1 0.1 0.43 9.9 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4391) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:226087-226404 Augustus predicted protein sequence Tomato scaffold983_contigs=13~226087-226404 Pol_alpha_B_N PF08418.5 g28219.t1 - 7.1 6 7.2 0.57 9.6 1.6 1.6 1 1 1 2 2 2 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:165488-166036 Augustus predicted protein sequence Tomato scaffold993_contigs=5~165488-166036 Transposase_28 PF04195.7 g53806.t1 - 0.00045 19.5 0 0.00065 19 0 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:75917-77046 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~75917-77046 IIGP PF05049.8 g23559.t1 - 0.055 12.2 0 0.055 12.2 0 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:104930-105184 Augustus predicted protein sequence Tomato scaffold863_contigs=2~104930-105184 ChaB PF06150.7 g48017.t1 - 0.017 14.9 0 0.027 14.2 0 1.3 1 0 0 1 1 1 0 ChaB | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:360117-360371 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~360117-360371 Mito_fiss_reg PF05308.6 g12453.t1 - 0.058 12.7 4.7 0.079 12.3 3.2 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:5973-6593 Augustus predicted protein sequence Tomato scaffold555_contigs=3~5973-6593 zf-CCHC PF00098.18 g47449.t1 - 0.0014 18.4 0.7 0.0014 18.4 0.5 1.7 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1495_contigs=2, transcript_loc=scaffold1495_contigs=2:28260-29430 Augustus predicted protein sequence Tomato scaffold1495_contigs=2~28260-29430 zf-XS PF03470.9 g87571.t1 - 0.012 15.5 4.3 2.3 8.3 0.2 2.4 2 0 0 2 2 2 0 XS zinc finger domain | Ref_seq=scaffold3329_contigs=1, transcript_loc=scaffold3329_contigs=1:1385-2351 Augustus predicted protein sequence Tomato scaffold3329_contigs=1~1385-2351 zf-CCHC PF00098.18 g42757.t1 - 0.4 10.7 5.3 0.4 10.6 1.1 2.5 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:173737-174063 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~173737-174063 Disulph_isomer PF06491.6 g458.t1 - 0.0013 18.6 0 0.0013 18.5 0 1.1 1 0 0 1 1 1 1 Disulphide isomerase | Ref_seq=scaffold40_contigs=3, transcript_loc=scaffold40_contigs=3:67044-67286 Augustus predicted protein sequence Tomato scaffold40_contigs=3~67044-67286 Sec3-PIP2_bind PF15277.1 g26675.t1 - 0.034 13.9 0 0.064 13.1 0 1.4 1 1 0 1 1 1 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:69282-69957 Augustus predicted protein sequence Tomato scaffold957_contigs=5~69282-69957 UBN2 PF14223.1 g13643.t1 - 0.068 12.9 0 0.089 12.5 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:220654-220902 Augustus predicted protein sequence Tomato scaffold578_contigs=5~220654-220902 HNH PF01844.18 g50250.t1 - 0.11 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:34510-38729 Augustus predicted protein sequence Tomato scaffold1562_contigs=2~34510-38729 YdjO PF14169.1 g52996.t1 - 0.0014 18 0.1 0.0031 16.9 0.1 1.5 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:24850-28881 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~24850-28881 DUF3861 PF12977.2 g18679.t1 - 0.033 14.2 0.2 0.042 13.9 0.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3861) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:151028-151382 Augustus predicted protein sequence Tomato scaffold731_contigs=13~151028-151382 Sugar_tr PF00083.19 g33074.t1 - 0.064 11.8 0 0.072 11.6 0 1.1 1 0 0 1 1 1 0 Sugar (and other) transporter | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:39546-39980 Augustus predicted protein sequence Tomato scaffold1112_contigs=5~39546-39980 UBN2 PF14223.1 g42080.t1 - 0.00017 21.3 0.8 0.00044 20 0.1 2.1 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:423394-424509 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~423394-424509 Biopterin_H PF00351.16 g87787.t1 - 0.063 12 0 0.063 12 0 1 1 0 0 1 1 1 0 Biopterin-dependent aromatic amino acid hydroxylase | Ref_seq=scaffold4092_contigs=1, transcript_loc=scaffold4092_contigs=1:1-1151 Augustus predicted protein sequence Tomato scaffold4092_contigs=1~1-1151 DUF3520 PF12034.3 g37913.t1 - 0.048 13.7 0 0.058 13.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3520) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:215243-216337 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~215243-216337 Spc7 PF08317.6 g52155.t1 - 0.018 13.7 1.2 1.4 7.5 0.1 2 2 0 0 2 2 2 0 Spc7 kinetochore protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:252040-252447 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~252040-252447 FH2 PF02181.18 g72310.t1 - 0.038 12.8 0 0.07 12 0 1.4 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1039757-1047456 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1039757-1047456 DBD_Tnp_Mut PF03108.10 g18944.t1 - 0.00074 19 0.1 0.0012 18.3 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:125059-125565 Augustus predicted protein sequence Tomato scaffold738_contigs=9~125059-125565 Sigma70_ner PF04546.8 g75047.t1 - 0.0000046 26.4 2.4 0.0000084 25.5 1.6 1.4 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:19182-22647 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~19182-22647 Mg-por_mtran_C PF07109.6 g56132.t1 - 0.033 14.2 0 0.05 13.6 0 1.2 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:5155-5538 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~5155-5538 bZIP_1 PF00170.16 g50266.t1 - 1.4 8.9 6.9 5.4 7 0.8 2.6 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:74877-75626 Augustus predicted protein sequence Tomato scaffold1562_contigs=2~74877-75626 CDC45 PF02724.9 g9410.t1 - 0.17 9.8 0.3 0.21 9.5 0.2 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:195264-195812 Augustus predicted protein sequence Tomato scaffold455_contigs=9~195264-195812 DENN PF02141.16 g80938.t1 - 0.055 13.1 0.1 0.064 12.9 0.1 1 1 0 0 1 1 1 0 DENN (AEX-3) domain | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:363818-364247 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~363818-364247 DDHD PF02862.12 g38091.t1 - 0.13 12 2.7 0.14 11.9 1.9 1 1 0 0 1 1 1 0 DDHD domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:217214-217534 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~217214-217534 MULE PF10551.4 g45946.t1 - 0.000024 24.3 0.1 0.000045 23.5 0.1 1.5 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:333237-336660 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~333237-336660 WASH-7_C PF14746.1 g7468.t1 - 0.0015 18.1 0 1.6 8.3 0 2 1 1 1 2 2 2 2 WASH complex subunit 7, C-terminal | Ref_seq=scaffold400_contigs=4, transcript_loc=scaffold400_contigs=4:48043-50149 Augustus predicted protein sequence Tomato scaffold400_contigs=4~48043-50149 Endotoxin_N PF03945.9 g42885.t1 - 0.057 12.7 0 0.084 12.2 0 1.2 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:43569-44393 Augustus predicted protein sequence Tomato scaffold1375_contigs=5~43569-44393 VitD-bind_III PF09164.5 g85580.t1 - 0.098 12.2 1 0.17 11.4 0.7 1.4 1 0 0 1 1 1 0 Vitamin D binding protein, domain III | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:30552-30983 Augustus predicted protein sequence Tomato scaffold2810_contigs=1~30552-30983 UBN2 PF14223.1 g37114.t1 - 0.0002 21 0.2 0.00036 20.3 0.1 1.5 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:321377-321879 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~321377-321879 LexA_DNA_bind PF01726.11 g5935.t1 - 0.11 12.1 0.1 0.23 11 0 1.7 1 1 0 1 1 1 0 LexA DNA binding domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:176295-176934 Augustus predicted protein sequence Tomato scaffold344_contigs=14~176295-176934 PC4 PF02229.11 g58618.t1 - 0.00041 19.5 0 0.37 10 0 2.5 2 0 0 2 2 2 2 Transcriptional Coactivator p15 (PC4) | Ref_seq=scaffold1865_contigs=13, transcript_loc=scaffold1865_contigs=13:11262-15850 Augustus predicted protein sequence Tomato scaffold1865_contigs=13~11262-15850 PMD PF10536.4 g27016.t1 - 0.095 11.6 0.1 0.12 11.2 0.1 1.1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:225693-228521 Augustus predicted protein sequence Tomato scaffold965_contigs=10~225693-228521 zf-BED PF02892.10 g63889.t1 - 0.006 16.3 3.9 0.016 14.9 1.6 2.3 2 1 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:144655-150567 Augustus predicted protein sequence Tomato scaffold2046_contigs=5~144655-150567 SRP54_N PF02881.14 g67035.t1 - 0.0022 18 0.4 0.41 10.7 0 2.2 2 0 0 2 2 2 2 SRP54-type protein, helical bundle domain | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:580779-581222 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~580779-581222 DUF2048 PF09752.4 g44886.t1 - 0.056 12.3 0 0.066 12 0 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:39569-39820 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~39569-39820 IFP_35_N PF07334.8 g28645.t1 - 0.00019 21.3 1.2 0.00085 19.2 0.7 2.2 1 1 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:34196-37549 Augustus predicted protein sequence Tomato scaffold1008_contigs=4~34196-37549 CDC45 PF02724.9 g11560.t1 - 0.094 10.7 4.7 0.088 10.8 3.3 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:415915-417140 Augustus predicted protein sequence Tomato scaffold525_contigs=12~415915-417140 Fmp27_WPPW PF10359.4 g37979.t1 - 0.064 11.6 1.3 0.071 11.5 0.9 1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:405587-406000 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~405587-406000 LURAP PF14854.1 g57482.t1 - 0.00082 19 0 0.0065 16.1 0 1.9 1 1 1 2 2 2 1 Leucine rich adaptor protein | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:223664-224254 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~223664-224254 Pro_CA PF00484.14 g18236.t1 - 0.11 12.4 0 0.16 11.9 0 1.2 1 0 0 1 1 1 0 Carbonic anhydrase | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:848205-849932 Augustus predicted protein sequence Tomato scaffold720_contigs=9~848205-849932 RVP_2 PF08284.6 g18123.t1 - 0.0083 16 0 0.015 15.2 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:482416-483884 Augustus predicted protein sequence Tomato scaffold720_contigs=9~482416-483884 DBD_Tnp_Mut PF03108.10 g49675.t1 - 0.15 11.6 0.2 0.29 10.7 0 1.5 2 0 0 2 2 2 0 MuDR family transposase | Ref_seq=scaffold1544_contigs=6, transcript_loc=scaffold1544_contigs=6:157861-158130 Augustus predicted protein sequence Tomato scaffold1544_contigs=6~157861-158130 Cep57_MT_bd PF06657.8 g54365.t1 - 0.014 15.3 0.7 0.028 14.3 0.5 1.5 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:142856-143437 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~142856-143437 Tegument_dsDNA PF12818.2 g60304.t1 - 0.00051 18.9 0.3 0.64 8.8 0 2.1 2 0 0 2 2 2 2 dsDNA viral tegument protein | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:26122-27725 Augustus predicted protein sequence Tomato scaffold1948_contigs=36~26122-27725 Apolipoprotein PF01442.13 g32883.t1 - 0.0014 18.1 2.6 0.0022 17.5 1.8 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:278630-281089 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~278630-281089 DUF1510 PF07423.6 g12392.t1 - 0.013 14.8 12.2 0.018 14.3 8.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:72328-74346 Augustus predicted protein sequence Tomato scaffold549_contigs=4~72328-74346 Pox_A_type_inc PF04508.7 g48726.t1 - 0.22 11.3 0.1 0.22 11.3 0.1 2.4 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:882663-884439 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~882663-884439 FBPase_2 PF06874.6 g17072.t1 - 0.00092 17.3 1.5 0.0012 17 1 1.1 1 0 0 1 1 1 1 Firmicute fructose-1,6-bisphosphatase | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:103411-103905 Augustus predicted protein sequence Tomato scaffold694_contigs=2~103411-103905 CC PF04942.9 g66223.t1 - 0.12 12.2 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 CC domain | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:187474-188659 Augustus predicted protein sequence Tomato scaffold2154_contigs=6~187474-188659 UPF0184 PF03670.8 g39187.t1 - 0.019 15.1 1.7 0.029 14.5 1.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:232842-233102 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~232842-233102 DBD_Tnp_Mut PF03108.10 g59873.t1 - 0.000023 23.8 0 0.000041 23 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:45198-49203 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~45198-49203 Peptidase_C65 PF10275.4 g58058.t1 - 0.0053 16.1 0.4 0.0059 15.9 0.3 1.1 1 0 0 1 1 1 1 Peptidase C65 Otubain | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:301082-302887 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~301082-302887 DUF929 PF06053.6 g24388.t1 - 0.011 14.8 0 0.011 14.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF929) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:421389-421682 Augustus predicted protein sequence Tomato scaffold880_contigs=9~421389-421682 UBN2 PF14223.1 g20585.t1 - 0.0017 18.1 0.8 0.0031 17.2 0 1.7 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1184666-1188577 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1184666-1188577 RhoGEF PF00621.15 g42531.t1 - 0.024 14.5 0.4 0.033 14 0.3 1.2 1 0 0 1 1 1 0 RhoGEF domain | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:102674-103785 Augustus predicted protein sequence Tomato scaffold1361_contigs=6~102674-103785 DUF159 PF02586.9 g27208.t1 - 0.072 12.6 0.1 0.08 12.4 0 1.1 1 0 0 1 1 1 0 Uncharacterised ACR, COG2135 | Ref_seq=scaffold973_contigs=10, transcript_loc=scaffold973_contigs=10:33954-34580 Augustus predicted protein sequence Tomato scaffold973_contigs=10~33954-34580 Glycos_transf_1 PF00534.15 g27781.t1 - 0.064 12.6 0.4 0.13 11.7 0.3 1.5 1 1 0 1 1 1 0 Glycosyl transferases group 1 | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:705652-705909 Augustus predicted protein sequence Tomato scaffold983_contigs=13~705652-705909 Mu-conotoxin PF05374.7 g75654.t1 - 7.6 6.4 9.9 18 5.2 1.1 2.6 2 0 0 2 2 2 0 Mu-Conotoxin | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:224933-228730 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~224933-228730 ATHILA PF03078.10 g84163.t1 - 0.00000013 30.5 0 0.00000016 30.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:225543-225788 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~225543-225788 DpnD-PcfM PF14207.1 g87151.t1 - 0.078 12.7 0.5 0.18 11.5 0.4 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold2945_contigs=1, transcript_loc=scaffold2945_contigs=1:3671-5417 Augustus predicted protein sequence Tomato scaffold2945_contigs=1~3671-5417 Ycf1 PF05758.7 g31536.t1 - 0.64 7.6 22.1 0.73 7.4 15.3 1.3 1 0 0 1 1 1 0 Ycf1 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:120073-120675 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~120073-120675 Whi5 PF08528.6 g27763.t1 - 0.13 11.9 0.3 0.3 10.7 0 1.7 2 0 0 2 2 2 0 Whi5 like | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:652278-652607 Augustus predicted protein sequence Tomato scaffold983_contigs=13~652278-652607 Strep_SA_rep PF06696.6 g73571.t1 - 0.35 10.6 2.6 0.48 10.2 0.8 1.9 2 0 0 2 2 2 0 Streptococcal surface antigen repeat | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:90654-90986 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~90654-90986 RNase_H2-Ydr279 PF09468.5 g23252.t1 - 0.059 12.5 5.7 0.068 12.3 4 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:133245-133796 Augustus predicted protein sequence Tomato scaffold854_contigs=5~133245-133796 Tiny_TM_bacill PF09680.5 g11329.t1 - 1.3 8.5 7.1 1.1 8.7 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:268403-269035 Augustus predicted protein sequence Tomato scaffold523_contigs=15~268403-269035 DUF4283 PF14111.1 g74629.t1 - 0.0078 15.3 0 0.011 14.8 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:220052-220612 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~220052-220612 Peptidase_C1_2 PF03051.10 g12924.t1 - 0.11 11 0 0.13 10.7 0 1.2 1 0 0 1 1 1 0 Peptidase C1-like family | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:391344-392777 Augustus predicted protein sequence Tomato scaffold561_contigs=10~391344-392777 DUF2708 PF10917.3 g64455.t1 - 0.14 11.9 5.3 0.25 11.1 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2708) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:161084-164581 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~161084-164581 RCR PF12273.3 g71153.t1 - 0.021 15.3 0.1 0.028 14.9 0.1 1.1 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:1065-1834 Augustus predicted protein sequence Tomato scaffold2357_contigs=7~1065-1834 DegS PF05384.6 g59442.t1 - 0.0076 15.4 0.7 0.0085 15.3 0.5 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:26122-26428 Augustus predicted protein sequence Tomato scaffold1923_contigs=35~26122-26428 DHODB_Fe-S_bind PF10418.4 g23091.t1 - 0.047 13.1 0.1 0.065 12.7 0 1.2 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:109965-110246 Augustus predicted protein sequence Tomato scaffold848_contigs=10~109965-110246 DUF4219 PF13961.1 g47040.t1 - 0.000013 24.4 0.5 0.000028 23.4 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:242098-243985 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~242098-243985 DUF2192 PF09958.4 g2335.t1 - 0.075 12.2 0 0.11 11.6 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2192) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:142485-144135 Augustus predicted protein sequence Tomato scaffold234_contigs=2~142485-144135 gp32 PF08804.5 g46979.t1 - 0.14 12.2 0 0.17 12 0 1.2 1 0 0 1 1 1 0 gp32 DNA binding protein like | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:997239-997511 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~997239-997511 Cytadhesin_P30 PF07271.6 g68355.t1 - 0.084 12.1 0.6 0.1 11.8 0.4 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:135665-136036 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~135665-136036 GAS PF13851.1 g17927.t1 - 0.011 14.9 8.2 0.015 14.4 5.7 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:173223-173699 Augustus predicted protein sequence Tomato scaffold717_contigs=7~173223-173699 DUF4515 PF14988.1 g35980.t1 - 0.059 13 1 0.08 12.6 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:142507-142818 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~142507-142818 UPF0126 PF03458.8 g84997.t1 - 2 8 7.2 0.83 9.3 0.8 2.2 2 0 0 2 2 2 0 UPF0126 domain | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:105521-105859 Augustus predicted protein sequence Tomato scaffold2786_contigs=1~105521-105859 Viral_Rep PF02407.11 g11507.t1 - 0.12 12.4 0.1 0.14 12.1 0.1 1.1 1 0 0 1 1 1 0 Putative viral replication protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:202514-202741 Augustus predicted protein sequence Tomato scaffold525_contigs=12~202514-202741 DUF4414 PF14377.1 g53284.t1 - 0.059 13.2 0 0.081 12.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4414) | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:1-853 Augustus predicted protein sequence Tomato scaffold1689_contigs=11~1-853 FlgI PF02119.11 g41632.t1 - 0.019 13.6 0.1 0.021 13.4 0 1.1 1 0 0 1 1 1 0 Flagellar P-ring protein | Ref_seq=scaffold1339_contigs=6, transcript_loc=scaffold1339_contigs=6:98380-98763 Augustus predicted protein sequence Tomato scaffold1339_contigs=6~98380-98763 Spc97_Spc98 PF04130.8 g23810.t1 - 0.16 10.2 3.1 2.3 6.4 0.4 2.1 2 0 0 2 2 2 0 Spc97 / Spc98 family | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:266-2286 Augustus predicted protein sequence Tomato scaffold866_contigs=9~266-2286 Somatostatin PF03002.10 g40885.t1 - 6.8 6.4 6.4 6.9 6.4 0.5 2.7 2 0 0 2 2 2 0 Somatostatin/Cortistatin family | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:5054-10792 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~5054-10792 fn2 PF00040.14 g47321.t1 - 0.02 14.8 0.4 0.029 14.3 0.3 1.2 1 0 0 1 1 1 0 Fibronectin type II domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:149165-149704 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~149165-149704 PEX-1N PF09262.6 g1963.t1 - 0.099 12.7 0.3 0.23 11.5 0.2 1.8 1 1 0 1 1 1 0 Peroxisome biogenesis factor 1, N-terminal | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:54692-54982 Augustus predicted protein sequence Tomato scaffold221_contigs=3~54692-54982 AAA_23 PF13476.1 g26487.t1 - 0.0017 18.7 3.6 0.0028 18 2.5 1.3 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:186750-190933 Augustus predicted protein sequence Tomato scaffold949_contigs=2~186750-190933 Sigma70_ner PF04546.8 g9328.t1 - 0.53 9.8 7.9 0.021 14.4 1.6 1.6 2 0 0 2 2 2 0 Sigma-70, non-essential region | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:36654-37394 Augustus predicted protein sequence Tomato scaffold453_contigs=2~36654-37394 Tropomyosin PF00261.15 g5691.t1 - 0.0094 15 4.3 0.016 14.2 3 1.3 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:52779-53207 Augustus predicted protein sequence Tomato scaffold337_contigs=4~52779-53207 PI-PLC-X PF00388.14 g65925.t1 - 0.14 11.5 0 0.21 11 0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:182693-183061 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~182693-183061 Vir_act_alpha_C PF10400.4 g60087.t1 - 0.015 15.6 0.1 0.019 15.3 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1941_contigs=2, transcript_loc=scaffold1941_contigs=2:13517-13831 Augustus predicted protein sequence Tomato scaffold1941_contigs=2~13517-13831 HPD PF05044.7 g63143.t1 - 0.017 14.7 0 0.02 14.5 0 1.1 1 0 0 1 1 1 0 Homeo-prospero domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:305093-305395 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~305093-305395 DUF1347 PF07079.6 g24863.t1 - 0.06 11.5 0 0.077 11.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold902_contigs=1, transcript_loc=scaffold902_contigs=1:28626-29237 Augustus predicted protein sequence Tomato scaffold902_contigs=1~28626-29237 zf-RNPHF PF08080.7 g87902.t1 - 0.075 12.5 0 0.1 12.1 0 1.2 1 0 0 1 1 1 0 RNPHF zinc finger | Ref_seq=scaffold4764_contigs=1, transcript_loc=scaffold4764_contigs=1:1-208 Augustus predicted protein sequence Tomato scaffold4764_contigs=1~1-208 DUF2743 PF10899.3 g9830.t1 - 0.035 13.4 0.7 0.042 13.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:7092-7397 Augustus predicted protein sequence Tomato scaffold476_contigs=10~7092-7397 Gly_rich PF12810.2 g75388.t1 - 0.0024 17.5 0.1 0.0027 17.3 0 1.1 1 0 0 1 1 1 1 Glycine rich protein | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:223223-228165 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~223223-228165 UPF0102 PF02021.12 g77095.t1 - 0.12 12.2 0.3 0.17 11.8 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 | Ref_seq=scaffold2649_contigs=6, transcript_loc=scaffold2649_contigs=6:3829-4345 Augustus predicted protein sequence Tomato scaffold2649_contigs=6~3829-4345 Peptidase_S68 PF10461.4 g8716.t1 - 0.0054 16.4 0 0.017 14.8 0 1.9 2 0 0 2 2 2 1 Peptidase S68 | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:6575-6826 Augustus predicted protein sequence Tomato scaffold434_contigs=1~6575-6826 DUF4172 PF13776.1 g36252.t1 - 0.082 13 0.1 0.1 12.6 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:83565-83825 Augustus predicted protein sequence Tomato scaffold1189_contigs=6~83565-83825 Kdo_hydroxy PF11004.3 g87130.t1 - 0.024 13.6 0.5 0.041 12.8 0.4 1.3 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:2661-3179 Augustus predicted protein sequence Tomato scaffold2942_contigs=1~2661-3179 DUF538 PF04398.7 g58860.t1 - 0.000000018 34.5 0.6 0.0019 18.4 0.1 2.1 1 1 1 2 2 2 2 Protein of unknown function, DUF538 | Ref_seq=scaffold1878_contigs=7, transcript_loc=scaffold1878_contigs=7:23531-24690 Augustus predicted protein sequence Tomato scaffold1878_contigs=7~23531-24690 PSD2 PF07624.6 g14330.t1 - 0.14 11.8 0.3 0.42 10.2 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:64655-64981 Augustus predicted protein sequence Tomato scaffold588_contigs=2~64655-64981 FA_hydroxylase PF04116.8 g58263.t1 - 0.79 10.1 8.4 0.53 10.7 0.6 2.1 1 1 1 2 2 2 0 Fatty acid hydroxylase superfamily | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:44689-45737 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~44689-45737 DUF3662 PF12401.3 g75114.t1 - 0.085 13 0 0.13 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2662) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:317541-317756 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~317541-317756 Pantoate_transf PF02548.10 g328.t1 - 0.13 11.3 0.2 0.17 10.9 0.1 1.2 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:8813-12191 Augustus predicted protein sequence Tomato scaffold18_contigs=2~8813-12191 Ribosomal_60s PF00428.14 g62699.t1 - 0.04 14.3 0.1 0.043 14.2 0.1 1.1 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:416831-417049 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~416831-417049 NPDC1 PF06809.6 g33127.t1 - 0.18 10.5 1.7 0.2 10.4 1.2 1.1 1 0 0 1 1 1 0 Neural proliferation differentiation control-1 protein (NPDC1) | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:40897-41106 Augustus predicted protein sequence Tomato scaffold1113_contigs=8~40897-41106 DUF3219 PF11514.3 g58319.t1 - 0.00091 19 0.1 0.096 12.5 0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3219) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:42333-44204 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~42333-44204 CUB_2 PF02408.15 g54936.t1 - 0.056 12.9 1.7 0.081 12.4 1.2 1.3 1 0 0 1 1 1 0 CUB-like domain | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:236408-236743 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~236408-236743 DUF2743 PF10899.3 g80962.t1 - 0.12 11.7 0.7 0.13 11.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:36256-36459 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~36256-36459 ING PF12998.2 g31367.t1 - 0.041 14.1 0.5 0.049 13.9 0.3 1.1 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:27383-27619 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~27383-27619 RXT2_N PF08595.6 g51294.t1 - 0.18 11.6 8.9 0.24 11.1 6.2 1.2 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1610_contigs=9, transcript_loc=scaffold1610_contigs=9:59020-59337 Augustus predicted protein sequence Tomato scaffold1610_contigs=9~59020-59337 SnAPC_2_like PF11035.3 g14155.t1 - 0.036 13.5 2.3 0.043 13.2 1.6 1.1 1 0 0 1 1 1 0 Small nuclear RNA activating complex subunit 2-like | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:148475-150781 Augustus predicted protein sequence Tomato scaffold586_contigs=6~148475-150781 LZ_Tnp_IS66 PF13007.2 g19512.t1 - 2.4 8.8 5.2 4 8.1 3.6 1.7 1 1 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:191102-191954 Augustus predicted protein sequence Tomato scaffold752_contigs=5~191102-191954 Fer4_4 PF12800.2 g5320.t1 - 1.2 9.6 4.8 2.6 8.6 3.3 1.5 1 1 0 1 1 1 0 4Fe-4S binding domain | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:100220-100462 Augustus predicted protein sequence Tomato scaffold322_contigs=4~100220-100462 DUF2360 PF10152.4 g20060.t1 - 0.18 12.1 0.7 0.47 10.7 0.2 1.7 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:147534-147887 Augustus predicted protein sequence Tomato scaffold767_contigs=5~147534-147887 TraS PF10624.4 g32093.t1 - 0.19 11.2 0.7 0.27 10.8 0.5 1.3 1 1 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:331647-331883 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~331647-331883 FH2 PF02181.18 g5903.t1 - 0.017 14 0 0.019 13.8 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:84021-84407 Augustus predicted protein sequence Tomato scaffold344_contigs=14~84021-84407 Ribosomal_60s PF00428.14 g64621.t1 - 0.015 15.7 1.2 0.02 15.2 0.8 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:210441-211123 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~210441-211123 DegS PF05384.6 g37970.t1 - 0.011 15 3.2 0.017 14.3 2.2 1.3 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:382324-384078 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~382324-384078 Ribosomal_L34 PF00468.12 g15185.t1 - 0.0019 17.8 0.6 2.1 8.1 0 2.3 2 0 0 2 2 2 2 Ribosomal protein L34 | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:77271-78487 Augustus predicted protein sequence Tomato scaffold621_contigs=9~77271-78487 Auts2 PF15336.1 g86702.t1 - 0.12 12.3 3.3 0.15 12 2.3 1.2 1 0 0 1 1 1 0 Autism susceptibility gene 2 protein | Ref_seq=scaffold2884_contigs=1, transcript_loc=scaffold2884_contigs=1:5594-7390 Augustus predicted protein sequence Tomato scaffold2884_contigs=1~5594-7390 Trigger_N PF05697.8 g32920.t1 - 0.11 12.3 1 2.6 7.8 0.2 2 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:416306-416713 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~416306-416713 DUF3915 PF13054.1 g36318.t1 - 0.099 12.5 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) | Ref_seq=scaffold1191_contigs=1, transcript_loc=scaffold1191_contigs=1:12917-13327 Augustus predicted protein sequence Tomato scaffold1191_contigs=1~12917-13327 DUF3844 PF12955.2 g30612.t1 - 0.018 15.1 0.1 1.4 9 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3844) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:349234-350828 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~349234-350828 BURP PF03181.10 g77377.t1 - 0.077 12.1 0.1 0.088 11.9 0 1.1 1 0 0 1 1 1 0 BURP domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:164134-164442 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~164134-164442 Merozoite_SPAM PF07133.6 g35979.t1 - 2 8.3 7.9 2.5 7.9 5.5 1.3 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:141949-142449 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~141949-142449 DUF2594 PF10769.4 g79455.t1 - 0.089 12.8 0 0.13 12.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:127323-127748 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~127323-127748 NAM-associated PF14303.1 g41151.t1 - 0.000021 24.8 12.3 0.000029 24.4 8.5 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1325_contigs=9, transcript_loc=scaffold1325_contigs=9:170666-171208 Augustus predicted protein sequence Tomato scaffold1325_contigs=9~170666-171208 Ste5 PF11610.3 g6798.t1 - 0.14 11.7 0.3 1.8 8.1 0.1 2.1 2 0 0 2 2 2 0 Scaffold protein Ste5-Fus5 binding region | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:20842-21816 Augustus predicted protein sequence Tomato scaffold383_contigs=3~20842-21816 Sigma70_ner PF04546.8 g64776.t1 - 0.7 9.4 4.2 1.2 8.6 2.9 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold2096_contigs=7, transcript_loc=scaffold2096_contigs=7:31661-32164 Augustus predicted protein sequence Tomato scaffold2096_contigs=7~31661-32164 Bombinin PF05298.6 g37577.t1 - 0.2 11.1 1 0.66 9.4 0.3 1.7 1 1 1 2 2 2 0 Bombinin | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:243055-243399 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~243055-243399 DUF1682 PF07946.9 g43715.t1 - 0.0044 15.9 0.3 0.006 15.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:108322-110965 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~108322-110965 HALZ PF02183.13 g19593.t1 - 0.000045 23 6.5 0.0018 17.9 0 2.8 3 0 0 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:141276-142022 Augustus predicted protein sequence Tomato scaffold756_contigs=8~141276-142022 Nop14 PF04147.7 g18163.t1 - 8.4 4.1 13.5 9.8 3.9 9.4 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:594800-597516 Augustus predicted protein sequence Tomato scaffold720_contigs=9~594800-597516 EBV-NA3 PF05009.7 g41250.t1 - 0.33 10.1 1.3 0.35 10 0.9 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:105361-105588 Augustus predicted protein sequence Tomato scaffold1328_contigs=9~105361-105588 Cast PF10174.4 g60631.t1 - 0.063 11.3 4.6 0.075 11 3.2 1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:176844-177158 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~176844-177158 Prolamin_like PF05617.6 g29066.t1 - 0.0086 16.1 1.3 0.016 15.2 0.8 1.5 1 1 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:459773-461218 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~459773-461218 GPW_gp25 PF04965.9 g81318.t1 - 0.056 12.9 0.4 0.071 12.6 0.3 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:324978-325232 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~324978-325232 Vfa1 PF08432.5 g47555.t1 - 0.033 14.2 0.1 0.044 13.7 0 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:506648-507151 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~506648-507151 DUF3395 PF11875.3 g31922.t1 - 0.67 9.5 7.3 0.71 9.4 5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3395) | Ref_seq=scaffold1095_contigs=4, transcript_loc=scaffold1095_contigs=4:13931-15282 Augustus predicted protein sequence Tomato scaffold1095_contigs=4~13931-15282 Bile_Hydr_Trans PF04775.9 g30622.t1 - 0.038 13.6 0 0.06 13 0 1.3 1 0 0 1 1 1 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:370841-375435 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~370841-375435 zf-CCHC PF00098.18 g34860.t1 - 0.0044 16.8 0.8 0.0071 16.2 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1163_contigs=2, transcript_loc=scaffold1163_contigs=2:4912-6584 Augustus predicted protein sequence Tomato scaffold1163_contigs=2~4912-6584 HATPase_c_2 PF13581.1 g78365.t1 - 0.13 12.1 0 0.25 11.1 0 1.6 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:13797-15019 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~13797-15019 RhaA PF06134.6 g37743.t1 - 0.05 12.5 0.3 0.048 12.5 0.2 1.1 1 0 0 1 1 1 0 L-rhamnose isomerase (RhaA) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:166683-168495 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~166683-168495 WEMBL PF05701.6 g43060.t1 - 0.00012 20.7 3 0.00016 20.3 2.1 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:285528-287112 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~285528-287112 DUF2866 PF11065.3 g49915.t1 - 0.0012 18.7 0 0.0021 17.9 0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2866) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:605453-609253 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~605453-609253 DUF4632 PF15451.1 g79619.t1 - 2.2 8.2 8.6 34 4.4 0.3 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4632) | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:293449-294905 Augustus predicted protein sequence Tomato scaffold2699_contigs=36~293449-294905 NID PF07292.8 g72181.t1 - 0.14 12.2 0.7 3.2 7.8 0 2.2 2 0 0 2 2 2 0 Nmi/IFP 35 domain (NID) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:549953-550982 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~549953-550982 UBN2 PF14223.1 g58862.t1 - 0.00041 20.1 0.4 1.7 8.4 0 3 3 0 0 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:1671-2669 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~1671-2669 DUF3456 PF11938.3 g14073.t1 - 0.061 13.3 0.1 0.076 13 0.1 1.1 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:370250-373994 Augustus predicted protein sequence Tomato scaffold583_contigs=2~370250-373994 U79_P34 PF03064.11 g65384.t1 - 0.00092 18.7 5.4 0.0012 18.4 3.7 1.1 1 0 0 1 1 1 1 HSV U79 / HCMV P34 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:341893-342297 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~341893-342297 NAM-associated PF14303.1 g65462.t1 - 0.00028 21.2 2.5 0.00031 21 1.8 1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:89456-89686 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~89456-89686 RE_MamI PF09567.5 g65614.t1 - 0.14 11.2 0.2 0.17 10.9 0.1 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:128368-128667 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~128368-128667 Cas_CT1975 PF09344.5 g54142.t1 - 0.12 11.7 0 0.13 11.5 0 1 1 0 0 1 1 1 0 CT1975-like protein | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:116819-117088 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~116819-117088 UBN2 PF14223.1 g86556.t1 - 0.041 13.6 0.1 0.21 11.4 0.1 1.9 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2872_contigs=1, transcript_loc=scaffold2872_contigs=1:29104-31428 Augustus predicted protein sequence Tomato scaffold2872_contigs=1~29104-31428 DUF3069 PF11269.3 g38117.t1 - 0.031 14.3 0.1 0.039 14 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3069) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:281845-284498 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~281845-284498 DUF1324 PF07038.6 g6691.t1 - 0.12 12.3 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1324) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:302260-302541 Augustus predicted protein sequence Tomato scaffold380_contigs=11~302260-302541 Stb3 PF10330.4 g28706.t1 - 0.088 12.5 0 0.12 12.1 0 1.2 1 0 0 1 1 1 0 Putative Sin3 binding protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:39220-39632 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~39220-39632 PMEI PF04043.10 g47659.t1 - 0.00032 20.6 0 0.0005 20 0 1.2 1 0 0 1 1 1 1 Plant invertase/pectin methylesterase inhibitor | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:56083-62220 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~56083-62220 DUF4283 PF14111.1 g9643.t1 - 0.11 11.6 0 0.13 11.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold463_contigs=2, transcript_loc=scaffold463_contigs=2:27852-28839 Augustus predicted protein sequence Tomato scaffold463_contigs=2~27852-28839 Tim54 PF11711.3 g63804.t1 - 1.2 7.6 7.6 0.22 10 2.9 1.4 2 0 0 2 2 2 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:229729-231148 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~229729-231148 DUF605 PF04652.11 g19666.t1 - 9.2 5.5 10.7 9.3 5.5 7.4 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:31214-31749 Augustus predicted protein sequence Tomato scaffold757_contigs=4~31214-31749 RWP-RK PF02042.10 g7230.t1 - 0.033 14 0.5 0.052 13.3 0.3 1.3 1 0 0 1 1 1 0 RWP-RK domain | Ref_seq=scaffold390_contigs=8, transcript_loc=scaffold390_contigs=8:177362-177730 Augustus predicted protein sequence Tomato scaffold390_contigs=8~177362-177730 Leu_zip PF15294.1 g64585.t1 - 0.014 14.5 7.2 0.017 14.2 5 1 1 0 0 1 1 1 0 Leucine zipper | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:52835-53167 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~52835-53167 OKR_DC_1 PF01276.15 g18030.t1 - 0.13 10.7 0.3 0.14 10.6 0.2 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:256194-256511 Augustus predicted protein sequence Tomato scaffold720_contigs=9~256194-256511 RVT_3 PF13456.1 g45321.t1 - 0.00026 20.7 0 0.00045 19.9 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:819995-820606 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~819995-820606 TPR_MLP1_2 PF07926.7 g71952.t1 - 0.037 13.7 1 0.047 13.4 0.7 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:444692-444985 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~444692-444985 DUF485 PF04341.7 g8190.t1 - 0.12 12 2.7 0.22 11.2 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF485 | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:318297-318659 Augustus predicted protein sequence Tomato scaffold421_contigs=12~318297-318659 EMP24_GP25L PF01105.19 g1697.t1 - 0.032 13.9 0 0.038 13.7 0 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:177329-177673 Augustus predicted protein sequence Tomato scaffold213_contigs=5~177329-177673 Rod_cone_degen PF15201.1 g9440.t1 - 0.71 9.7 3.4 0.35 10.7 0.2 2.1 2 1 0 2 2 2 0 Progressive rod-cone degeneration | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:363663-364067 Augustus predicted protein sequence Tomato scaffold455_contigs=9~363663-364067 End3 PF12761.2 g44745.t1 - 0.042 13.4 0 8.1 6 0 2.2 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:206675-207226 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~206675-207226 zf-CCHC PF00098.18 g69332.t1 - 0.000035 23.5 1 0.000052 22.9 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:50425-50691 Augustus predicted protein sequence Tomato scaffold2271_contigs=9~50425-50691 ACR_tran PF00873.14 g30272.t1 - 0.14 9.5 0.3 0.2 9 0.2 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:71190-73843 Augustus predicted protein sequence Tomato scaffold1041_contigs=2~71190-73843 DM4_12 PF07841.8 g4695.t1 - 0.046 14 0 0.12 12.6 0 1.7 1 0 0 1 1 1 0 DM4/DM12 family | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:182319-183703 Augustus predicted protein sequence Tomato scaffold306_contigs=7~182319-183703 Btz PF09405.5 g30573.t1 - 0.038 14 0.3 0.046 13.7 0.2 1.2 1 0 0 1 1 1 0 CASC3/Barentsz eIF4AIII binding | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:188189-189235 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~188189-189235 DUF3670 PF12419.3 g51905.t1 - 0.12 11.7 0.1 0.12 11.7 0.1 1.6 2 0 0 2 2 2 0 SNF2 Helicase protein | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:55308-56715 Augustus predicted protein sequence Tomato scaffold1626_contigs=2~55308-56715 TAF1D PF15333.1 g49192.t1 - 0.042 13.6 4.4 0.086 12.6 3.1 1.5 1 0 0 1 1 1 0 TATA box-binding protein-associated factor 1D | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:145008-146178 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~145008-146178 S-antigen PF05756.6 g76911.t1 - 6.7 6.7 9.9 7.9 6.5 6.8 1.1 1 0 0 1 1 1 0 S-antigen protein | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:1-727 Augustus predicted protein sequence Tomato scaffold2642_contigs=12~1-727 PAE PF03283.8 g87029.t1 - 0.00036 19.2 0 0.00044 19 0 1.1 1 0 0 1 1 1 1 Pectinacetylesterase | Ref_seq=scaffold2925_contigs=1, transcript_loc=scaffold2925_contigs=1:798-1259 Augustus predicted protein sequence Tomato scaffold2925_contigs=1~798-1259 DUF1510 PF07423.6 g10899.t1 - 0.075 12.3 10.2 0.089 12.1 7.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:317217-317691 Augustus predicted protein sequence Tomato scaffold508_contigs=9~317217-317691 RXT2_N PF08595.6 g44852.t1 - 0.025 14.3 0.1 0.029 14.1 0.1 1.1 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:246180-246524 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~246180-246524 Ssu72 PF04722.8 g9387.t1 - 0.11 11.7 0 0.17 11.1 0 1.2 1 0 0 1 1 1 0 Ssu72-like protein | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:128871-132809 Augustus predicted protein sequence Tomato scaffold455_contigs=9~128871-132809 H-K_ATPase_N PF09040.6 g11207.t1 - 0.13 12.3 0.1 0.26 11.4 0 1.5 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain | Ref_seq=scaffold522_contigs=18, transcript_loc=scaffold522_contigs=18:15995-17219 Augustus predicted protein sequence Tomato scaffold522_contigs=18~15995-17219 Antibiotic_NAT PF02522.9 g18181.t1 - 0.11 11.6 0 0.19 10.9 0 1.3 1 0 0 1 1 1 0 Aminoglycoside 3-N-acetyltransferase | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:639329-641965 Augustus predicted protein sequence Tomato scaffold720_contigs=9~639329-641965 FDX-ACB PF03147.9 g23709.t1 - 0.0052 16.9 0 0.0067 16.5 0 1.2 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:103444-103932 Augustus predicted protein sequence Tomato scaffold865_contigs=7~103444-103932 BCMA-Tall_bind PF09257.5 g55896.t1 - 0.54 10.2 4.7 1.4 8.9 3.3 1.7 1 0 0 1 1 1 0 BCMA, TALL-1 binding | Ref_seq=scaffold1777_contigs=8, transcript_loc=scaffold1777_contigs=8:29618-29902 Augustus predicted protein sequence Tomato scaffold1777_contigs=8~29618-29902 DBD_Tnp_Mut PF03108.10 g55737.t1 - 0.041 13.4 1.2 0.08 12.5 0.5 1.8 2 0 0 2 2 2 0 MuDR family transposase | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:58869-59270 Augustus predicted protein sequence Tomato scaffold1765_contigs=2~58869-59270 Radial_spoke_3 PF06098.6 g62583.t1 - 0.14 11.1 6.1 0.15 10.9 4.3 1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:301816-302085 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~301816-302085 Hepatitis_core PF00906.15 g41960.t1 - 0.017 14.8 1.7 0.028 14 1.2 1.3 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:23363-32311 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~23363-32311 PBP1_TM PF14812.1 g36883.t1 - 0.26 11.6 2.7 0.3 11.4 1.9 1.3 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1211_contigs=3, transcript_loc=scaffold1211_contigs=3:37741-38469 Augustus predicted protein sequence Tomato scaffold1211_contigs=3~37741-38469 DUF3587 PF12132.3 g42294.t1 - 0.15 11.2 0.1 0.22 10.7 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3587) | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:105897-106223 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~105897-106223 DUF3659 PF12396.3 g87481.t1 - 0.005 16.4 0 20 4.9 0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF3659) | Ref_seq=scaffold3130_contigs=1, transcript_loc=scaffold3130_contigs=1:1103-4830 Augustus predicted protein sequence Tomato scaffold3130_contigs=1~1103-4830 TP2 PF01254.13 g68092.t1 - 0.062 13.6 0 0.082 13.2 0 1.1 1 0 0 1 1 1 0 Nuclear transition protein 2 | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:381135-383040 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~381135-383040 DUF4283 PF14111.1 g75562.t1 - 0.028 13.4 0.1 0.037 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:66884-67174 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~66884-67174 CopK PF11525.3 g73517.t1 - 0.071 12.7 0.1 0.12 12 0.1 1.3 1 0 0 1 1 1 0 Copper resistance protein K | Ref_seq=scaffold2482_contigs=7, transcript_loc=scaffold2482_contigs=7:6652-6939 Augustus predicted protein sequence Tomato scaffold2482_contigs=7~6652-6939 GCIP PF13324.1 g61629.t1 - 0.057 12.6 0 0.06 12.5 0 1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:58174-60624 Augustus predicted protein sequence Tomato scaffold1972_contigs=6~58174-60624 Transferase PF02458.10 g1010.t1 - 0.069 11.5 0 0.072 11.5 0 1.1 1 0 0 1 1 1 0 Transferase family | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:195284-195565 Augustus predicted protein sequence Tomato scaffold184_contigs=2~195284-195565 DUF3306 PF11748.3 g12548.t1 - 0.11 13.1 0.3 0.17 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3306) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:231862-232389 Augustus predicted protein sequence Tomato scaffold556_contigs=11~231862-232389 Med9 PF07544.8 g59468.t1 - 0.0042 16.8 0.2 0.0071 16 0.1 1.4 1 1 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:130902-131335 Augustus predicted protein sequence Tomato scaffold1923_contigs=35~130902-131335 MCR_D PF02505.9 g1052.t1 - 0.0042 16.6 0.1 0.067 12.7 0 2.1 2 0 0 2 2 2 1 Methyl-coenzyme M reductase operon protein D | Ref_seq=scaffold186_contigs=2, transcript_loc=scaffold186_contigs=2:30348-31132 Augustus predicted protein sequence Tomato scaffold186_contigs=2~30348-31132 Ribosomal_S25 PF03297.10 g60594.t1 - 0.37 10.8 2.9 0.73 9.9 2 1.5 1 0 0 1 1 1 0 S25 ribosomal protein | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:29486-29839 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~29486-29839 TMEM247 PF15444.1 g5805.t1 - 0.4 10.4 2.4 0.42 10.3 1.7 1 1 0 0 1 1 1 0 Transmembrane protein 247 | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:305705-306066 Augustus predicted protein sequence Tomato scaffold338_contigs=10~305705-306066 ERM PF00769.14 g14701.t1 - 0.024 14.1 0.6 0.025 14 0.4 1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:214308-214568 Augustus predicted protein sequence Tomato scaffold599_contigs=8~214308-214568 OAD_gamma PF04277.8 g50983.t1 - 0.023 15 0.9 0.036 14.4 0.6 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:10291-10560 Augustus predicted protein sequence Tomato scaffold1596_contigs=1~10291-10560 DUF1341 PF07071.6 g86954.t1 - 0.073 12.6 0 0.087 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:11890-12192 Augustus predicted protein sequence Tomato scaffold2915_contigs=1~11890-12192 GED PF02212.13 g1752.t1 - 0.11 12.3 0.9 0.18 11.7 0.6 1.3 1 0 0 1 1 1 0 Dynamin GTPase effector domain | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:22688-24494 Augustus predicted protein sequence Tomato scaffold215_contigs=2~22688-24494 Insulin PF00049.13 g29325.t1 - 0.081 13.7 0.1 0.11 13.3 0 1.3 1 1 0 1 1 1 0 Insulin/IGF/Relaxin family | Ref_seq=scaffold1021_contigs=20, transcript_loc=scaffold1021_contigs=20:101119-101319 Augustus predicted protein sequence Tomato scaffold1021_contigs=20~101119-101319 Vir_act_alpha_C PF10400.4 g53721.t1 - 0.0062 16.8 0.3 0.0073 16.6 0.2 1.1 1 0 0 1 1 1 1 Virulence activator alpha C-term | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:70467-70688 Augustus predicted protein sequence Tomato scaffold1702_contigs=7~70467-70688 YdjO PF14169.1 g47774.t1 - 0.071 12.5 0.1 0.17 11.3 0.1 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1498_contigs=4, transcript_loc=scaffold1498_contigs=4:108394-111947 Augustus predicted protein sequence Tomato scaffold1498_contigs=4~108394-111947 UBN2 PF14223.1 g21491.t1 - 0.0025 17.5 0 0.0035 17.1 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:68241-69523 Augustus predicted protein sequence Tomato scaffold800_contigs=2~68241-69523 YdjO PF14169.1 g25039.t1 - 0.11 11.9 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:159479-161250 Augustus predicted protein sequence Tomato scaffold909_contigs=6~159479-161250 DUF2987 PF11205.3 g42063.t1 - 0.037 13.6 2.7 0.051 13.2 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2987) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:346829-347502 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~346829-347502 CENP-F_leu_zip PF10473.4 g33519.t1 - 0.012 15.4 2.9 0.015 15.1 2 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:96443-96945 Augustus predicted protein sequence Tomato scaffold1132_contigs=4~96443-96945 Shugoshin_N PF07558.6 g74319.t1 - 0.038 13.6 2.4 0.062 13 1.7 1.3 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region | Ref_seq=scaffold2532_contigs=1, transcript_loc=scaffold2532_contigs=1:496-1341 Augustus predicted protein sequence Tomato scaffold2532_contigs=1~496-1341 LRRCT PF01463.19 g40753.t1 - 7.2 7.2 7.7 1.9 8.9 0.9 3.1 3 1 1 4 4 4 0 Leucine rich repeat C-terminal domain | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:115035-115322 Augustus predicted protein sequence Tomato scaffold1309_contigs=4~115035-115322 DUF3647 PF12363.3 g25069.t1 - 0.11 12.6 0.2 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Phage protein | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:297103-297366 Augustus predicted protein sequence Tomato scaffold909_contigs=6~297103-297366 MIP-T3 PF10243.4 g31525.t1 - 0.25 9.7 39.5 0.3 9.4 27.4 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:98473-100403 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~98473-100403 DUF35_N PF12172.3 g52435.t1 - 0.69 9.8 7.1 0.88 9.5 4.1 1.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:38385-38849 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~38385-38849 DUF1398 PF07166.6 g1003.t1 - 0.021 14.7 0 2 8.3 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:160880-162092 Augustus predicted protein sequence Tomato scaffold184_contigs=2~160880-162092 Sigma70_ner PF04546.8 g30820.t1 - 0.0092 15.6 2.5 0.018 14.6 1.7 1.5 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:469651-474201 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~469651-474201 DBD_Tnp_Mut PF03108.10 g3646.t1 - 0.00000058 28.9 0.1 0.0000011 28.1 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:101097-101900 Augustus predicted protein sequence Tomato scaffold279_contigs=4~101097-101900 Ada_Zn_binding PF02805.11 g566.t1 - 0.19 11.3 0.1 0.19 11.3 0.1 1.9 2 1 0 2 2 2 0 Metal binding domain of Ada | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:80429-80716 Augustus predicted protein sequence Tomato scaffold53_contigs=4~80429-80716 CENP-H PF05837.7 g64927.t1 - 0.053 13.7 1.6 0.06 13.5 1.1 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:138311-138556 Augustus predicted protein sequence Tomato scaffold2100_contigs=9~138311-138556 Polyketide_cyc PF03364.15 g19348.t1 - 0.025 14.5 0 0.034 14.1 0 1.3 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:176771-180019 Augustus predicted protein sequence Tomato scaffold751_contigs=13~176771-180019 zf-CCHC PF00098.18 g69297.t1 - 0.079 12.9 0.5 0.079 12.9 0.3 2.1 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2269_contigs=7, transcript_loc=scaffold2269_contigs=7:25620-26291 Augustus predicted protein sequence Tomato scaffold2269_contigs=7~25620-26291 HALZ PF02183.13 g68243.t1 - 0.013 15.2 10.3 0.018 14.7 1.2 2.8 2 1 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:280473-281051 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~280473-281051 DUF1826 PF08856.6 g43811.t1 - 0.064 12.9 0 0.09 12.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1826) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:403262-403555 Augustus predicted protein sequence Tomato scaffold1392_contigs=17~403262-403555 RXT2_N PF08595.6 g39457.t1 - 1.1 9 3.8 1.7 8.4 2.6 1.3 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:50142-56058 Augustus predicted protein sequence Tomato scaffold1271_contigs=3~50142-56058 MUG2_C PF08593.5 g71862.t1 - 3.2 8 5.8 8.9 6.6 1.3 3 2 1 1 3 3 3 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:94247-94711 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~94247-94711 DUF4404 PF14357.1 g69561.t1 - 0.4 11.1 3.5 0.98 9.8 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:133320-133667 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~133320-133667 GRP PF07172.6 g81119.t1 - 5.7 7.4 24.8 97 3.5 17.2 2 1 1 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:236945-237283 Augustus predicted protein sequence Tomato scaffold2722_contigs=6~236945-237283 DUF1985 PF09331.6 g15219.t1 - 0.000018 24.5 0 0.000037 23.5 0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold622_contigs=1, transcript_loc=scaffold622_contigs=1:35645-37508 Augustus predicted protein sequence Tomato scaffold622_contigs=1~35645-37508 IncA PF04156.9 g51239.t1 - 0.0015 18.1 10.9 0.03 13.8 6.3 2.2 2 0 0 2 2 2 1 IncA protein | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:151500-152561 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~151500-152561 Globin PF00042.17 g69841.t1 - 0.1 12.9 0 0.15 12.4 0 1.2 1 0 0 1 1 1 0 Globin | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:141137-141697 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~141137-141697 TPR_MLP1_2 PF07926.7 g77637.t1 - 0.058 13.1 0.8 2.9 7.6 0.2 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:289326-290200 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~289326-290200 Med30 PF11315.3 g39511.t1 - 0.046 13.8 0.7 11 6 0 2.4 2 0 0 2 2 2 0 Mediator complex subunit 30 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:69484-70053 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~69484-70053 DUF2215 PF10225.4 g1759.t1 - 0.0022 17.4 0.2 0.0025 17.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:29846-30271 Augustus predicted protein sequence Tomato scaffold215_contigs=2~29846-30271 Myc_target_1 PF15179.1 g61734.t1 - 0.034 13.7 5.3 0.75 9.3 0.2 2.3 2 0 0 2 2 2 0 Myc target protein 1 | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:279810-282090 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~279810-282090 Serglycin PF04360.7 g70206.t1 - 0.41 10.3 1.9 0.36 10.5 1.3 1.2 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold2334_contigs=7, transcript_loc=scaffold2334_contigs=7:1-100 Augustus predicted protein sequence Tomato scaffold2334_contigs=7~1-100 HSBP1 PF06825.7 g43231.t1 - 0.08 12.5 0.6 0.13 11.8 0.4 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:200790-202470 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~200790-202470 PhoQ_Sensor PF08918.5 g65246.t1 - 0.14 11.6 0.4 1.3 8.5 0.5 2 2 0 0 2 2 2 0 PhoQ Sensor | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:31020-31547 Augustus predicted protein sequence Tomato scaffold2122_contigs=11~31020-31547 Sugarporin_N PF11471.3 g48958.t1 - 0.041 13.5 0 0.068 12.8 0 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1518_contigs=7, transcript_loc=scaffold1518_contigs=7:11793-12023 Augustus predicted protein sequence Tomato scaffold1518_contigs=7~11793-12023 PAT1 PF09770.4 g47432.t1 - 8.5 4.4 10.1 12 4 7 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1494_contigs=2, transcript_loc=scaffold1494_contigs=2:19959-23223 Augustus predicted protein sequence Tomato scaffold1494_contigs=2~19959-23223 Matrilin_ccoil PF10393.4 g87906.t1 - 0.017 14.4 0 0.026 13.8 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold4772_contigs=1, transcript_loc=scaffold4772_contigs=1:224-557 Augustus predicted protein sequence Tomato scaffold4772_contigs=1~224-557 DUF3721 PF12518.3 g14542.t1 - 0.67 9.6 2.7 1.2 8.8 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:39366-40213 Augustus predicted protein sequence Tomato scaffold597_contigs=5~39366-40213 Ilar_coat PF01787.11 g72311.t1 - 0.11 12 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1048171-1054229 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1048171-1054229 Lipid_DES PF08557.5 g50973.t1 - 0.000021 23.6 0.2 0.24 10.6 0 2.5 2 0 0 2 2 2 2 Sphingolipid Delta4-desaturase (DES) | Ref_seq=scaffold1593_contigs=11, transcript_loc=scaffold1593_contigs=11:31368-38815 Augustus predicted protein sequence Tomato scaffold1593_contigs=11~31368-38815 DBD_Tnp_Mut PF03108.10 g17133.t1 - 0.025 14.1 0 0.039 13.5 0 1.3 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold696_contigs=4, transcript_loc=scaffold696_contigs=4:909-1538 Augustus predicted protein sequence Tomato scaffold696_contigs=4~909-1538 RPAP1_N PF08621.5 g51201.t1 - 0.12 12 0 0.16 11.5 0 1.2 1 0 0 1 1 1 0 RPAP1-like, N-terminal | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:234233-234520 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~234233-234520 Totivirus_coat PF05518.6 g77205.t1 - 0.1 10.4 1.8 1.8 6.2 0.1 2 1 1 1 2 2 2 0 Totivirus coat protein | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:49900-50707 Augustus predicted protein sequence Tomato scaffold2651_contigs=23~49900-50707 Luteo_Vpg PF01659.11 g85681.t1 - 0.015 14.9 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Luteovirus putative VPg genome linked protein | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:41203-41596 Augustus predicted protein sequence Tomato scaffold2814_contigs=1~41203-41596 Herpes_LMP2 PF07415.6 g56845.t1 - 3.2 6.2 5.8 9.1 4.7 4.2 1.5 1 1 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:70604-71111 Augustus predicted protein sequence Tomato scaffold1821_contigs=10~70604-71111 CCT_2 PF09425.5 g67548.t1 - 0.000000034 32.8 2.8 0.000000081 31.6 1.9 1.7 1 0 0 1 1 1 1 Divergent CCT motif | Ref_seq=scaffold2186_contigs=16, transcript_loc=scaffold2186_contigs=16:98288-100196 Augustus predicted protein sequence Tomato scaffold2186_contigs=16~98288-100196 zf-CCHC PF00098.18 g11557.t1 - 0.000011 25 1 0.000016 24.5 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:408743-409150 Augustus predicted protein sequence Tomato scaffold525_contigs=12~408743-409150 BTK PF00779.14 g74278.t1 - 0.043 13.4 0.7 0.086 12.4 0.5 1.4 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold2527_contigs=1, transcript_loc=scaffold2527_contigs=1:32502-36048 Augustus predicted protein sequence Tomato scaffold2527_contigs=1~32502-36048 GEMIN8 PF15348.1 g32035.t1 - 0.0043 17.1 3.3 0.0058 16.7 2.3 1.1 1 0 0 1 1 1 1 Gemini of Cajal bodies-associated protein 8 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:172024-176337 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~172024-176337 Cdd1 PF11731.3 g56778.t1 - 0.12 12.3 0 0.15 12 0 1.1 1 0 0 1 1 1 0 Pathogenicity locus | Ref_seq=scaffold1817_contigs=8, transcript_loc=scaffold1817_contigs=8:196775-197026 Augustus predicted protein sequence Tomato scaffold1817_contigs=8~196775-197026 XLF PF09302.6 g11026.t1 - 0.077 12.7 0 0.077 12.7 0 1.2 1 0 0 1 1 1 0 XLF (XRCC4-like factor) | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:3138-3566 Augustus predicted protein sequence Tomato scaffold512_contigs=2~3138-3566 FlxA PF14282.1 g12878.t1 - 1.3 9 8.5 0.17 11.8 2.7 1.9 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:217285-221541 Augustus predicted protein sequence Tomato scaffold561_contigs=10~217285-221541 Tymo_45kd_70kd PF03251.8 g78338.t1 - 0.0088 14.7 2 0.0088 14.7 1.4 1.1 1 0 0 1 1 1 1 Tymovirus 45/70Kd protein | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:229467-229709 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~229467-229709 zf-CCHC PF00098.18 g46159.t1 - 0.000076 22.4 0.7 0.00014 21.6 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:257851-259020 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~257851-259020 FlaC_arch PF05377.6 g25838.t1 - 0.038 13.8 1.6 6.1 6.8 0.1 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:358163-361001 Augustus predicted protein sequence Tomato scaffold933_contigs=12~358163-361001 NADH_4Fe-4S PF10589.4 g40740.t1 - 0.028 13.5 0.2 0.066 12.3 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:67098-69014 Augustus predicted protein sequence Tomato scaffold1309_contigs=4~67098-69014 Retrotrans_gag PF03732.12 g53813.t1 - 0.032 14.3 0.1 0.061 13.3 0.1 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:97175-99993 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~97175-99993 Pathogen_betaC1 PF09593.5 g54828.t1 - 0.11 12.1 0.1 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:151735-152046 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~151735-152046 BAR PF03114.13 g80842.t1 - 0.41 10.1 2.1 0.83 9.1 1.5 1.5 1 1 0 1 1 1 0 BAR domain | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:23424-23762 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~23424-23762 DUF2207 PF09972.4 g82929.t1 - 0.054 12 0.1 0.064 11.8 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) | Ref_seq=scaffold2751_contigs=9, transcript_loc=scaffold2751_contigs=9:47908-48333 Augustus predicted protein sequence Tomato scaffold2751_contigs=9~47908-48333 TC1 PF15063.1 g15824.t1 - 0.083 12.4 0.5 0.55 9.8 0 2.3 2 1 0 2 2 2 0 Thyroid cancer protein 1 | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:83944-84905 Augustus predicted protein sequence Tomato scaffold645_contigs=7~83944-84905 MCC-bdg_PDZ PF10506.4 g6852.t1 - 0.093 12.5 0.4 0.12 12.1 0.2 1.1 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:72936-73151 Augustus predicted protein sequence Tomato scaffold384_contigs=11~72936-73151 Orthopox_35kD PF02250.10 g30880.t1 - 0.1 11.8 0.1 0.14 11.4 0 1.1 1 0 0 1 1 1 0 35kD major secreted virus protein | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:138320-139884 Augustus predicted protein sequence Tomato scaffold1048_contigs=2~138320-139884 B-block_TFIIIC PF04182.7 g58412.t1 - 0.017 14.9 0.1 0.83 9.5 0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:80736-81348 Augustus predicted protein sequence Tomato scaffold1861_contigs=7~80736-81348 Osteopontin PF00865.13 g60076.t1 - 0.036 13.2 0.2 0.04 13.1 0.1 1 1 0 0 1 1 1 0 Osteopontin | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:237272-237490 Augustus predicted protein sequence Tomato scaffold1939_contigs=7~237272-237490 Fzo_mitofusin PF04799.8 g77970.t1 - 0.018 14.4 1.9 0.018 14.4 1.3 1.8 1 1 1 2 2 2 0 fzo-like conserved region | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:98148-98498 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~98148-98498 NAGLU_N PF12971.2 g18185.t1 - 0.15 11.7 0.1 1.3 8.6 0 2.1 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:657332-657697 Augustus predicted protein sequence Tomato scaffold720_contigs=9~657332-657697 Mad3_BUB1_I PF08311.7 g30718.t1 - 0.047 13.4 0.1 0.06 13.1 0.1 1.2 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:144824-145285 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~144824-145285 PsbL PF02419.12 g17762.t1 - 0.038 13.4 0 0.1 12 0 1.7 1 0 0 1 1 1 0 PsbL protein | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:154733-155752 Augustus predicted protein sequence Tomato scaffold714_contigs=9~154733-155752 KTI12 PF08433.5 g7661.t1 - 0.091 11.9 0.2 0.1 11.7 0.1 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:100382-101051 Augustus predicted protein sequence Tomato scaffold405_contigs=10~100382-101051 FG-GAP_2 PF14312.1 g28729.t1 - 0.011 15.7 1.8 1.3 9 0.2 3.3 4 0 0 4 4 4 0 FG-GAP repeat | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:102365-105685 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~102365-105685 DNA_ligase_OB_2 PF14743.1 g34931.t1 - 0.0012 18.4 0 0.84 9.3 0 2.2 1 1 1 2 2 2 2 DNA ligase OB-like domain | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:253059-253400 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~253059-253400 SP_C-Propep PF08999.5 g31633.t1 - 0.014 14.8 0 0.02 14.3 0 1.2 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:101916-102224 Augustus predicted protein sequence Tomato scaffold1081_contigs=4~101916-102224 RVT_3 PF13456.1 g62290.t1 - 0.000015 24.6 0 0.000029 23.7 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:439432-439791 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~439432-439791 Big_3 PF07523.7 g36574.t1 - 0.0026 17.7 0.1 0.0044 17 0.1 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:121520-122557 Augustus predicted protein sequence Tomato scaffold1204_contigs=5~121520-122557 Costars PF14705.1 g83559.t1 - 0.065 13.2 0 0.088 12.8 0 1.2 1 0 0 1 1 1 0 Costars | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:947483-949973 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~947483-949973 DUF601 PF04642.7 g1138.t1 - 0.054 12.8 0.3 0.083 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF601 | Ref_seq=scaffold192_contigs=3, transcript_loc=scaffold192_contigs=3:20881-21811 Augustus predicted protein sequence Tomato scaffold192_contigs=3~20881-21811 Utp21 PF04192.7 g6668.t1 - 0.097 11.7 0 0.11 11.6 0 1.2 1 0 0 1 1 1 0 Utp21 specific WD40 associated putative domain | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:204205-205357 Augustus predicted protein sequence Tomato scaffold380_contigs=11~204205-205357 Cwf_Cwc_15 PF04889.7 g5155.t1 - 0.022 14.5 6.6 0.028 14.1 4.5 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:525470-527288 Augustus predicted protein sequence Tomato scaffold315_contigs=11~525470-527288 Luteo_Vpg PF01659.11 g40514.t1 - 2.9 7.6 9.4 1.6 8.4 0.7 2.6 1 1 2 3 3 3 0 Luteovirus putative VPg genome linked protein | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:209131-209523 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~209131-209523 DUF4140 PF13600.1 g50780.t1 - 0.15 12.4 2.6 0.38 11.2 1.2 2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:51656-53484 Augustus predicted protein sequence Tomato scaffold1570_contigs=4~51656-53484 bZIP_1 PF00170.16 g70109.t1 - 0.21 11.5 5.2 0.67 9.9 3.1 2.2 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:60630-65442 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~60630-65442 NtA PF03146.10 g52108.t1 - 0.0021 17.7 0.1 1.9 8.1 0 2.1 2 0 0 2 2 2 2 Agrin NtA domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:65543-66196 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~65543-66196 Carcinustatin PF08261.7 g31298.t1 - 9.9 7 6.1 75 4.4 0 3.6 4 0 0 4 4 4 0 Carcinustatin peptide | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:433809-436641 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~433809-436641 Ribosomal_S6 PF01250.12 g31196.t1 - 0.14 12 0.1 0.19 11.6 0 1.2 1 0 0 1 1 1 0 Ribosomal protein S6 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:9688-9963 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~9688-9963 Cytochrom_B558a PF05038.8 g37400.t1 - 1.7 8.2 3.6 0.86 9.1 0.1 2.2 1 1 1 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:103047-104748 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~103047-104748 zf-CCHC PF00098.18 g48232.t1 - 0.014 15.3 2 0.024 14.5 1.4 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:65245-65616 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~65245-65616 UPF0139 PF03669.8 g48204.t1 - 0.077 12.5 0 0.13 11.7 0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0139) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:236313-244373 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~236313-244373 SH3_1 PF00018.23 g43165.t1 - 0.21 11 0.8 0.33 10.3 0.6 1.3 1 0 0 1 1 1 0 SH3 domain | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:316416-316763 Augustus predicted protein sequence Tomato scaffold1383_contigs=8~316416-316763 PSI_PsaE PF02427.12 g64918.t1 - 0.15 11.4 0.1 0.3 10.4 0.1 1.5 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:113362-114924 Augustus predicted protein sequence Tomato scaffold2100_contigs=9~113362-114924 EF-hand_like PF09279.6 g49195.t1 - 0.021 14.8 0.3 0.023 14.7 0.2 1.2 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:153105-153359 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~153105-153359 KRAP_IP3R_bind PF14722.1 g19445.t1 - 0.14 11.7 0 0.18 11.3 0 1.1 1 0 0 1 1 1 0 Ki-ras-induced actin-interacting protein-IP3R-interacting domain | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:545149-545607 Augustus predicted protein sequence Tomato scaffold751_contigs=13~545149-545607 DUF1985 PF09331.6 g12196.t1 - 0.00000062 29.3 0 0.00000094 28.7 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:237588-239280 Augustus predicted protein sequence Tomato scaffold540_contigs=6~237588-239280 CBM_3 PF00942.13 g38763.t1 - 0.19 11.7 1.9 4.2 7.4 0.1 2.5 2 0 0 2 2 2 0 Cellulose binding domain | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:268460-268795 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~268460-268795 NST1 PF13945.1 g27603.t1 - 0.031 14.3 0 0.038 14 0 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:40473-40781 Augustus predicted protein sequence Tomato scaffold982_contigs=2~40473-40781 FlxA PF14282.1 g66697.t1 - 0.12 12.3 1.5 0.18 11.7 1.1 1.3 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:91674-93702 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~91674-93702 MAM1 PF10434.4 g74298.t1 - 0.0042 16.3 1.9 0.0054 15.9 1.3 1.2 1 0 0 1 1 1 1 Monopolin complex protein MAM1 | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:33204-33593 Augustus predicted protein sequence Tomato scaffold2530_contigs=9~33204-33593 PPP4R2 PF09184.6 g83441.t1 - 0.38 10.2 27.9 0.41 10.1 19.3 1.1 1 0 0 1 1 1 0 PPP4R2 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:517182-519906 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~517182-519906 LTP_2 PF14368.1 g19106.t1 - 0.12 12.5 2.1 0.13 12.4 1.5 1.1 1 0 0 1 1 1 0 Probable lipid transfer | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:155310-155588 Augustus predicted protein sequence Tomato scaffold744_contigs=4~155310-155588 DUF148 PF02520.12 g86052.t1 - 0.019 14.7 2.2 0.03 14.1 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:35024-35572 Augustus predicted protein sequence Tomato scaffold2834_contigs=1~35024-35572 HpaP PF09483.5 g50675.t1 - 0.075 12.9 0.8 0.078 12.9 0.6 1.1 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:132201-132539 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~132201-132539 DUF1985 PF09331.6 g45995.t1 - 0.000066 22.7 0 0.0001 22.1 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:45391-47157 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~45391-47157 rve PF00665.21 g12440.t1 - 0.00019 21.5 0 0.0002 21.4 0 1.1 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold553_contigs=7, transcript_loc=scaffold553_contigs=7:32114-32427 Augustus predicted protein sequence Tomato scaffold553_contigs=7~32114-32427 DUF4042 PF13251.1 g24973.t1 - 0.093 12.1 0 0.1 12 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4042) | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:143109-143393 Augustus predicted protein sequence Tomato scaffold907_contigs=7~143109-143393 DNA_pol_phi PF04931.8 g45076.t1 - 0.36 8.5 2.5 0.52 8 1.7 1.2 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:56993-57705 Augustus predicted protein sequence Tomato scaffold1443_contigs=30~56993-57705 Trypan_PARP PF05887.6 g42070.t1 - 0.0024 17.6 13.5 0.0027 17.5 9.4 1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:376496-376726 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~376496-376726 zf-CCHC PF00098.18 g67906.t1 - 0.0081 16 2.2 0.012 15.4 0.3 2.2 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:209698-210087 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~209698-210087 DNA_pol3_beta_3 PF02768.10 g45544.t1 - 0.037 13.5 0.4 0.051 13.1 0.3 1.2 1 0 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:14558-14884 Augustus predicted protein sequence Tomato scaffold1450_contigs=4~14558-14884 DUF2785 PF10978.3 g13861.t1 - 0.01 15.2 1.2 0.011 15.1 0.8 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:415908-416159 Augustus predicted protein sequence Tomato scaffold582_contigs=8~415908-416159 DUF2360 PF10152.4 g44073.t1 - 0.53 10.5 3.3 0.59 10.4 2.3 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:250103-250501 Augustus predicted protein sequence Tomato scaffold1403_contigs=11~250103-250501 MCPVI PF02993.9 g72061.t1 - 1.6 8.8 7.8 2.2 8.3 5.4 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:128417-132069 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~128417-132069 Peptidase_C31 PF05410.8 g85946.t1 - 0.011 15.6 0 0.014 15.2 0 1.1 1 0 0 1 1 1 0 Porcine arterivirus-type cysteine proteinase alpha | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:28371-28667 Augustus predicted protein sequence Tomato scaffold2829_contigs=1~28371-28667 TPR_7 PF13176.1 g49305.t1 - 0.11 12.3 0.9 0.2 11.5 0.6 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:74182-74571 Augustus predicted protein sequence Tomato scaffold1532_contigs=5~74182-74571 DUF2681 PF10883.3 g72343.t1 - 0.19 11.9 1.5 0.29 11.3 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1161932-1162257 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1161932-1162257 MHCassoc_trimer PF08831.5 g16003.t1 - 0.11 12.3 0.3 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:538443-538691 Augustus predicted protein sequence Tomato scaffold651_contigs=13~538443-538691 Glyco_hydro_53 PF07745.8 g47592.t1 - 0.0037 16 1.5 0.0045 15.8 1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:704602-705387 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~704602-705387 Tropomyosin_1 PF12718.2 g64199.t1 - 0.086 12.6 9.8 0.14 11.9 6.8 1.3 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:447793-451210 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~447793-451210 Pollen_Ole_e_I PF01190.12 g58707.t1 - 0.015 15 0 0.021 14.6 0 1.1 1 0 0 1 1 1 0 Pollen proteins Ole e I like | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:356760-357191 Augustus predicted protein sequence Tomato scaffold1870_contigs=16~356760-357191 ATP-synt_8 PF00895.15 g4084.t1 - 0.39 10.9 4.6 0.84 9.8 3.2 1.6 1 0 0 1 1 1 0 ATP synthase protein 8 | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:20937-21320 Augustus predicted protein sequence Tomato scaffold291_contigs=11~20937-21320 NYAP_N PF15439.1 g6405.t1 - 0.031 13.4 0.3 0.043 12.9 0.2 1.1 1 0 0 1 1 1 0 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter | Ref_seq=scaffold367_contigs=1, transcript_loc=scaffold367_contigs=1:9243-12141 Augustus predicted protein sequence Tomato scaffold367_contigs=1~9243-12141 DUF4283 PF14111.1 g48624.t1 - 0.000025 23.4 0 0.000034 22.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:517728-520338 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~517728-520338 CbtA PF09490.5 g31885.t1 - 0.043 13.1 0 0.062 12.6 0 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:15945-17505 Augustus predicted protein sequence Tomato scaffold1092_contigs=11~15945-17505 DNA_gyraseB PF00204.20 g78123.t1 - 0.0055 15.9 5.1 0.0059 15.8 3.6 1.1 1 0 0 1 1 1 1 DNA gyrase B | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:287707-288033 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~287707-288033 FH2 PF02181.18 g84070.t1 - 0.032 13.1 0 0.042 12.7 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:293638-295997 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~293638-295997 WEMBL PF05701.6 g28703.t1 - 0.00012 20.6 4.8 0.00012 20.6 3.3 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:29432-29937 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~29432-29937 PADR1 PF08063.7 g14010.t1 - 0.22 10.9 2.2 3.2 7.2 0 2.5 2 1 1 3 3 3 0 PADR1 (NUC008) domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:198001-198381 Augustus predicted protein sequence Tomato scaffold583_contigs=2~198001-198381 CDC45 PF02724.9 g46697.t1 - 0.0079 14.2 11.7 0.0086 14.1 8.1 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:66191-69641 Augustus predicted protein sequence Tomato scaffold1485_contigs=2~66191-69641 CRCB PF02537.10 g84233.t1 - 0.1 12.4 2.9 0.14 12 2 1.2 1 0 0 1 1 1 0 CrcB-like protein | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:212932-213427 Augustus predicted protein sequence Tomato scaffold2765_contigs=1~212932-213427 Hpre_diP_synt_I PF07456.6 g344.t1 - 0.0047 16.7 0.4 0.006 16.4 0.3 1.2 1 0 0 1 1 1 1 Heptaprenyl diphosphate synthase component I | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:41667-42336 Augustus predicted protein sequence Tomato scaffold18_contigs=2~41667-42336 CCT_2 PF09425.5 g74091.t1 - 0.0000025 26.9 4.2 0.0000053 25.8 2.9 1.6 1 0 0 1 1 1 1 Divergent CCT motif | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:466923-468403 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~466923-468403 BTK PF00779.14 g46524.t1 - 0.087 12.4 0.4 0.18 11.4 0.3 1.6 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:350484-350708 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~350484-350708 KRTAP7 PF15034.1 g69201.t1 - 0.1 13.2 0.4 0.16 12.6 0.3 1.2 1 0 0 1 1 1 0 KRTAP type 7 family | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:21771-24013 Augustus predicted protein sequence Tomato scaffold2263_contigs=12~21771-24013 zf-CCHC PF00098.18 g43168.t1 - 0.00003 23.7 0.5 0.000051 23 0.4 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:326810-327825 Augustus predicted protein sequence Tomato scaffold1383_contigs=8~326810-327825 HisG PF01634.13 g54414.t1 - 0.098 12.2 0 0.29 10.6 0 1.6 2 0 0 2 2 2 0 ATP phosphoribosyltransferase | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:256867-259540 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~256867-259540 DegS PF05384.6 g65924.t1 - 0.0063 15.7 1 0.02 14.1 0.3 1.9 2 0 0 2 2 2 1 Sensor protein DegS | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:181314-182569 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~181314-182569 Transposase_28 PF04195.7 g12947.t1 - 0.0015 17.8 0.1 0.0032 16.7 0.1 1.5 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:500629-504191 Augustus predicted protein sequence Tomato scaffold561_contigs=10~500629-504191 DUF3166 PF11365.3 g24644.t1 - 0.000071 23.1 3.9 0.036 14.5 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3166) | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:246947-247732 Augustus predicted protein sequence Tomato scaffold890_contigs=10~246947-247732 PBP1_TM PF14812.1 g1874.t1 - 0.15 12.3 0.6 0.21 11.9 0.4 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:160495-160839 Augustus predicted protein sequence Tomato scaffold218_contigs=4~160495-160839 HALZ PF02183.13 g55046.t1 - 0.045 13.4 5.2 0.52 10 0.2 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:71512-72281 Augustus predicted protein sequence Tomato scaffold1735_contigs=2~71512-72281 DUF3585 PF12130.3 g28540.t1 - 0.024 14.5 1.5 0.041 13.7 1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3585) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:294527-298133 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~294527-298133 FCH PF00611.18 g87788.t1 - 0.0053 16.9 1.1 0.25 11.5 0.1 2.2 1 1 1 2 2 2 2 Fes/CIP4, and EFC/F-BAR homology domain | Ref_seq=scaffold4104_contigs=1, transcript_loc=scaffold4104_contigs=1:1-1102 Augustus predicted protein sequence Tomato scaffold4104_contigs=1~1-1102 UBN2 PF14223.1 g4580.t1 - 0.025 14.3 0.1 0.033 13.9 0.1 1.3 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:8626-9131 Augustus predicted protein sequence Tomato scaffold304_contigs=1~8626-9131 Elong-fact-P_C PF09285.6 g83096.t1 - 0.12 11.7 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 Elongation factor P, C-terminal | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:171444-171821 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~171444-171821 ATHILA PF03078.10 g55753.t1 - 1.6E-010 40.2 0.1 1.8E-010 40 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:94466-94966 Augustus predicted protein sequence Tomato scaffold1765_contigs=2~94466-94966 4HBT_3 PF13622.1 g49360.t1 - 2.8 7.6 9.6 4.3 7 6.6 1.3 1 0 0 1 1 1 0 Thioesterase-like superfamily | Ref_seq=scaffold1536_contigs=31, transcript_loc=scaffold1536_contigs=31:79887-80587 Augustus predicted protein sequence Tomato scaffold1536_contigs=31~79887-80587 DUF1985 PF09331.6 g39298.t1 - 0.000000013 34.7 1.1 0.000000021 34 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:308991-313351 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~308991-313351 Spt5-NGN PF03439.8 g72820.t1 - 0.099 12.4 0 0.16 11.7 0 1.4 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:114583-118199 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~114583-118199 FtsH_ext PF06480.10 g58849.t1 - 0.11 12.6 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 FtsH Extracellular | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:59693-60109 Augustus predicted protein sequence Tomato scaffold1877_contigs=4~59693-60109 DUF3146 PF11344.3 g72095.t1 - 0.14 11.6 0.2 14 5.1 0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3146) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:761-1842 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~761-1842 CT47 PF15623.1 g58029.t1 - 0.072 12.8 13.3 0.084 12.5 9.2 1.2 1 0 0 1 1 1 0 Cancer/testis gene family 47 | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:190345-191052 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~190345-191052 L_lac_phage_MSP PF06488.6 g19497.t1 - 0.036 13.1 0 0.036 13.1 0 1.1 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major structural protein | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:124843-125250 Augustus predicted protein sequence Tomato scaffold752_contigs=5~124843-125250 PMD PF10536.4 g82646.t1 - 0.037 13 0 0.044 12.7 0 1.1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:364704-369974 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~364704-369974 Sugar_tr PF00083.19 g24810.t1 - 0.061 11.8 0.1 0.062 11.8 0.1 1 1 0 0 1 1 1 0 Sugar (and other) transporter | Ref_seq=scaffold899_contigs=2, transcript_loc=scaffold899_contigs=2:19931-20158 Augustus predicted protein sequence Tomato scaffold899_contigs=2~19931-20158 DUF427 PF04248.7 g66666.t1 - 0.008 15.8 0 0.0085 15.7 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:3473-3739 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~3473-3739 Hen1_L PF12623.2 g37857.t1 - 0.085 11.6 0 0.13 10.9 0 1.3 1 0 0 1 1 1 0 RNA repair, ligase-Pnkp-associating, region of Hen1 | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:75888-76280 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~75888-76280 DUF947 PF06102.7 g29649.t1 - 1.2 8.9 4.2 1.8 8.3 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF947) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:7839-10639 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~7839-10639 ATHILA PF03078.10 g8359.t1 - 0.00088 17.9 0.2 0.013 14.1 0.1 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:481979-482933 Augustus predicted protein sequence Tomato scaffold423_contigs=9~481979-482933 Herpes_TAF50 PF03326.8 g28489.t1 - 0.045 12.6 0.9 0.054 12.4 0.6 1 1 0 0 1 1 1 0 Herpesvirus transcription activation factor (transactivator) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:80246-80548 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~80246-80548 NOA36 PF06524.7 g28337.t1 - 3.5 6.7 6.2 3.3 6.8 4.3 1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold996_contigs=3, transcript_loc=scaffold996_contigs=3:156-494 Augustus predicted protein sequence Tomato scaffold996_contigs=3~156-494 DUF521 PF04412.8 g76829.t1 - 0.0089 14.6 0.1 0.012 14.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:17411-18547 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~17411-18547 HSD3 PF15244.1 g26855.t1 - 0.19 10.9 4.2 0.047 12.9 0.8 1.4 2 0 0 2 2 2 0 Hydroxy-steroid dehydrogenase | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:215594-217297 Augustus predicted protein sequence Tomato scaffold961_contigs=8~215594-217297 DUF1280 PF06918.9 g19417.t1 - 0.11 11.7 0.8 0.12 11.6 0.5 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:433358-433567 Augustus predicted protein sequence Tomato scaffold751_contigs=13~433358-433567 Cementoin PF10511.4 g59451.t1 - 0.081 12.6 2.9 8.2 6.3 0.2 2.5 2 0 0 2 2 2 0 Trappin protein transglutaminase binding domain | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:57032-59464 Augustus predicted protein sequence Tomato scaffold1923_contigs=35~57032-59464 LEA_6 PF10714.4 g32032.t1 - 0.036 13.8 0.6 0.054 13.3 0.4 1.3 1 0 0 1 1 1 0 Late embryogenesis abundant protein 18 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:164174-165709 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~164174-165709 DUF3007 PF11460.3 g16161.t1 - 0.12 12.4 1.6 0.16 12 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3007) | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:14310-15823 Augustus predicted protein sequence Tomato scaffold656_contigs=9~14310-15823 Vir_act_alpha_C PF10400.4 g405.t1 - 0.00065 20 0 0.00074 19.8 0 1 1 0 0 1 1 1 1 Virulence activator alpha C-term | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:22077-22289 Augustus predicted protein sequence Tomato scaffold31_contigs=1~22077-22289 YdjO PF14169.1 g27469.t1 - 0.016 14.6 0.2 0.031 13.7 0.2 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:215704-218449 Augustus predicted protein sequence Tomato scaffold980_contigs=13~215704-218449 TrbC_Ftype PF09673.5 g6847.t1 - 0.035 13.7 0.1 0.052 13.1 0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:66117-66581 Augustus predicted protein sequence Tomato scaffold384_contigs=11~66117-66581 Pox_A_type_inc PF04508.7 g8911.t1 - 0.01 15.5 0 0.025 14.3 0 1.6 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:270924-272225 Augustus predicted protein sequence Tomato scaffold442_contigs=14~270924-272225 Mito_fiss_reg PF05308.6 g15048.t1 - 0.036 13.4 6.7 0.04 13.2 4.6 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:87801-88164 Augustus predicted protein sequence Tomato scaffold617_contigs=9~87801-88164 Herpes_gp2 PF05955.6 g85537.t1 - 0.039 13.2 0.1 0.11 11.7 0.1 1.7 2 0 0 2 2 2 0 Equine herpesvirus glycoprotein gp2 | Ref_seq=scaffold2808_contigs=1, transcript_loc=scaffold2808_contigs=1:50023-50580 Augustus predicted protein sequence Tomato scaffold2808_contigs=1~50023-50580 PMD PF10536.4 g58162.t1 - 0.0000027 26.6 0 0.0000029 26.5 0 1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:79975-81281 Augustus predicted protein sequence Tomato scaffold1848_contigs=19~79975-81281 MRG PF05712.8 g60869.t1 - 0.000055 22.1 0.1 0.00007 21.7 0 1.1 1 0 0 1 1 1 1 MRG | Ref_seq=scaffold1961_contigs=3, transcript_loc=scaffold1961_contigs=3:7452-7700 Augustus predicted protein sequence Tomato scaffold1961_contigs=3~7452-7700 Nucleoplasmin PF03066.10 g42071.t1 - 4.4 6.7 6.2 6.7 6.2 4.3 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:380416-381493 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~380416-381493 DUF3156 PF11354.3 g64224.t1 - 0.31 10.4 4.7 7.2 5.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3156) | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:6318-7688 Augustus predicted protein sequence Tomato scaffold2057_contigs=11~6318-7688 OAD_gamma PF04277.8 g38817.t1 - 1.3 9.4 0 1.3 9.4 0 2.7 3 1 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:162763-164487 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~162763-164487 DUF724 PF05266.9 g28464.t1 - 0.036 13.6 1.1 0.036 13.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:163699-164062 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~163699-164062 DUF2096 PF09869.4 g70684.t1 - 0.11 12.3 0 0.15 11.9 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:212985-214861 Augustus predicted protein sequence Tomato scaffold2345_contigs=7~212985-214861 ATHILA PF03078.10 g28013.t1 - 0.0078 14.8 0 0.01 14.4 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:349572-351089 Augustus predicted protein sequence Tomato scaffold989_contigs=10~349572-351089 PAT1 PF09770.4 g23909.t1 - 1.1 7.3 7.1 1.4 7.1 4.9 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:86779-88314 Augustus predicted protein sequence Tomato scaffold874_contigs=5~86779-88314 Phage_GP20 PF06810.6 g28325.t1 - 0.075 12.4 5.7 0.1 12 4 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:299055-301514 Augustus predicted protein sequence Tomato scaffold994_contigs=5~299055-301514 MNE1 PF13762.1 g20622.t1 - 0.0025 17.8 0.5 0.0027 17.7 0.3 1.1 1 0 0 1 1 1 1 Mitochondrial splicing apparatus component | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:46802-47407 Augustus predicted protein sequence Tomato scaffold777_contigs=4~46802-47407 DUF1985 PF09331.6 g62574.t1 - 0.0002 21.1 0 0.00036 20.3 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:251426-252845 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~251426-252845 DUF1199 PF06712.6 g66642.t1 - 0.028 14.2 2.4 0.065 13 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:319150-319663 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~319150-319663 zf-CCHC PF00098.18 g30416.t1 - 0.00054 19.7 5.3 0.00093 19 3.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:369323-369687 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~369323-369687 CDC45 PF02724.9 g50231.t1 - 2.8 5.8 5.7 2.8 5.8 3.9 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:23960-24539 Augustus predicted protein sequence Tomato scaffold1561_contigs=2~23960-24539 XRCC4 PF06632.7 g12953.t1 - 0.047 12.5 0 0.048 12.5 0 1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:511173-511652 Augustus predicted protein sequence Tomato scaffold561_contigs=10~511173-511652 PsbK PF02533.10 g56816.t1 - 0.074 12.9 1.3 0.12 12.2 0.9 1.3 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component | Ref_seq=scaffold1819_contigs=5, transcript_loc=scaffold1819_contigs=5:94884-95255 Augustus predicted protein sequence Tomato scaffold1819_contigs=5~94884-95255 PRP1_N PF06424.7 g9353.t1 - 0.033 14.5 0.3 0.038 14.3 0.2 1 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:51999-52457 Augustus predicted protein sequence Tomato scaffold455_contigs=9~51999-52457 B5 PF03484.10 g24015.t1 - 0.11 12.3 0.1 1.2 9 0.1 2.6 2 1 0 2 2 2 0 tRNA synthetase B5 domain | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:126024-126500 Augustus predicted protein sequence Tomato scaffold875_contigs=10~126024-126500 Oest_recep PF02159.10 g3380.t1 - 0.034 14.2 1.4 0.041 14 1 1.1 1 0 0 1 1 1 0 Oestrogen receptor | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:203804-204109 Augustus predicted protein sequence Tomato scaffold270_contigs=10~203804-204109 zf-CCHC PF00098.18 g19877.t1 - 0.000021 24.2 0.7 0.00003 23.7 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:163735-164010 Augustus predicted protein sequence Tomato scaffold760_contigs=13~163735-164010 BHD_3 PF10405.4 g1104.t1 - 0.084 12.5 0 0.16 11.7 0 1.5 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 3 | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:58916-59968 Augustus predicted protein sequence Tomato scaffold191_contigs=2~58916-59968 DUF3070 PF11270.3 g51040.t1 - 3.4 7.5 11.7 0.081 12.7 1.9 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:47292-47977 Augustus predicted protein sequence Tomato scaffold1605_contigs=5~47292-47977 Drf_FH1 PF06346.7 g68688.t1 - 0.0061 16 3.3 0.008 15.7 2.3 1.1 1 0 0 1 1 1 1 Formin Homology Region 1 | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:106844-107305 Augustus predicted protein sequence Tomato scaffold2224_contigs=19~106844-107305 DUF788 PF05620.6 g21849.t1 - 0.014 15.2 0 0.017 14.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF788) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:43765-44169 Augustus predicted protein sequence Tomato scaffold817_contigs=11~43765-44169 ATHILA PF03078.10 g43967.t1 - 0.0000064 25 0 0.0000082 24.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:131128-133665 Augustus predicted protein sequence Tomato scaffold1397_contigs=9~131128-133665 DUF2652 PF10851.3 g28919.t1 - 0.014 15.4 1.1 0.65 10 0.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2652) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:811497-811883 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~811497-811883 ATHILA PF03078.10 g47277.t1 - 0.000015 23.7 0 0.011 14.4 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:50912-51474 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~50912-51474 Mycoplasma_p37 PF06646.6 g27407.t1 - 0.14 11.1 0 0.18 10.7 0 1.1 1 0 0 1 1 1 0 High affinity transport system protein p37 | Ref_seq=scaffold977_contigs=2, transcript_loc=scaffold977_contigs=2:7681-8919 Augustus predicted protein sequence Tomato scaffold977_contigs=2~7681-8919 DUF4657 PF15552.1 g37302.t1 - 0.029 13.6 0 0.035 13.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:326123-328262 Augustus predicted protein sequence Tomato scaffold1216_contigs=10~326123-328262 DUF702 PF05142.7 g63522.t1 - 0.042 14 1.6 0.05 13.7 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF702) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:328534-328881 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~328534-328881 ATHILA PF03078.10 g37444.t1 - 7.4E-012 44.5 0.4 9E-012 44.3 0.3 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:271638-272048 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~271638-272048 LRR_5 PF13306.1 g4971.t1 - 0.12 12 0 0.14 11.8 0 1 1 0 0 1 1 1 0 Leucine rich repeats (6 copies) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:115577-117589 Augustus predicted protein sequence Tomato scaffold312_contigs=3~115577-117589 ATHILA PF03078.10 g28829.t1 - 0.0000016 27 0 0.0000017 26.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:473957-474316 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~473957-474316 SapC PF07277.6 g19663.t1 - 0.018 14.3 0 0.024 13.9 0 1.2 1 0 0 1 1 1 0 SapC | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:25252-25581 Augustus predicted protein sequence Tomato scaffold757_contigs=4~25252-25581 GspH PF12019.3 g1313.t1 - 0.0013 18.8 0 2.7 8.1 0 4.4 3 1 2 5 5 5 1 Type II transport protein GspH | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:48479-51145 Augustus predicted protein sequence Tomato scaffold197_contigs=2~48479-51145 SAE2 PF08573.5 g24004.t1 - 0.45 11.2 2.6 0.62 10.7 1.8 1.2 1 0 0 1 1 1 0 DNA repair protein endonuclease SAE2/CtIP C-terminus | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:101249-103018 Augustus predicted protein sequence Tomato scaffold875_contigs=10~101249-103018 FERM_N PF09379.5 g43361.t1 - 0.087 12.8 0.1 0.58 10.2 0 2.3 2 1 0 2 2 2 0 FERM N-terminal domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:165470-171242 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~165470-171242 TAP_C PF03943.8 g13172.t1 - 0.1 12 0 0.19 11.1 0 1.4 1 0 0 1 1 1 0 TAP C-terminal domain | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:680425-682408 Augustus predicted protein sequence Tomato scaffold568_contigs=22~680425-682408 DUF4141 PF13605.1 g39486.t1 - 0.038 13.1 0 0.069 12.3 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4141) | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:137062-138933 Augustus predicted protein sequence Tomato scaffold1271_contigs=3~137062-138933 SAND PF01342.16 g79573.t1 - 0.12 12.1 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 SAND domain | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:51611-51820 Augustus predicted protein sequence Tomato scaffold2699_contigs=36~51611-51820 P22_AR_N PF10547.4 g74327.t1 - 0.034 13.9 0.2 0.068 12.9 0.1 1.5 1 0 0 1 1 1 0 P22_AR N-terminal domain | Ref_seq=scaffold2537_contigs=5, transcript_loc=scaffold2537_contigs=5:11829-12475 Augustus predicted protein sequence Tomato scaffold2537_contigs=5~11829-12475 Tnp_P_element_C PF12596.3 g16950.t1 - 0.13 12.5 2.1 0.17 12.2 0.2 2 1 1 1 2 2 2 0 87kDa Transposase | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:167743-169009 Augustus predicted protein sequence Tomato scaffold687_contigs=8~167743-169009 DUF826 PF05696.6 g41043.t1 - 0.11 12.6 0.3 0.15 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF826) | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:249965-250174 Augustus predicted protein sequence Tomato scaffold1320_contigs=26~249965-250174 FoP_duplication PF13865.1 g56138.t1 - 6.6 7.2 7.1 9.8 6.7 4.9 1.3 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:38111-38326 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~38111-38326 DUF164 PF02591.10 g3626.t1 - 0.08 12.7 0.2 2.3 8 0.1 2.5 2 0 0 2 2 2 0 Putative zinc ribbon domain | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:37534-37992 Augustus predicted protein sequence Tomato scaffold279_contigs=4~37534-37992 VirE1 PF12189.3 g82565.t1 - 0.053 13.6 0.2 1.7 8.7 0 2.7 2 1 1 3 3 3 0 Single-strand DNA-binding protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:90560-90838 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~90560-90838 AAA_33 PF13671.1 g70527.t1 - 0.17 11.7 1.5 0.2 11.5 1.1 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:207064-207291 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~207064-207291 Interferon PF00143.14 g43240.t1 - 0.13 12.1 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Interferon alpha/beta domain | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:228254-228589 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~228254-228589 NUDE_C PF04880.8 g66325.t1 - 0.05 13.9 0.7 0.095 13 0.5 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:40599-43035 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~40599-43035 M60-like PF13402.1 g43326.t1 - 0.16 10.8 0 0.2 10.5 0 1.1 1 0 0 1 1 1 0 Peptidase M60-like family | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:53489-53896 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~53489-53896 DUF1682 PF07946.9 g73370.t1 - 0.0015 17.4 6.5 0.0023 16.8 4.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:346292-347749 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~346292-347749 DUF3682 PF12446.3 g83247.t1 - 0.045 14 2.5 0.06 13.6 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3682) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:48116-49392 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~48116-49392 DegT_DnrJ_EryC1 PF01041.12 g24864.t1 - 0.091 11.7 0.1 0.17 10.9 0 1.4 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family | Ref_seq=scaffold902_contigs=1, transcript_loc=scaffold902_contigs=1:29301-30596 Augustus predicted protein sequence Tomato scaffold902_contigs=1~29301-30596 RNase_E_G PF10150.4 g28509.t1 - 0.094 11.9 0.2 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease E/G family | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:196606-197669 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~196606-197669 DUF4365 PF14280.1 g4737.t1 - 0.063 12.9 0.1 2.2 8 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4365) | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:30212-30721 Augustus predicted protein sequence Tomato scaffold307_contigs=2~30212-30721 VASP_tetra PF08776.6 g2624.t1 - 1.7 8 3.8 13 5.1 0.4 2.3 1 1 1 2 2 2 0 VASP tetramerisation domain | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:119635-121472 Augustus predicted protein sequence Tomato scaffold247_contigs=8~119635-121472 Sigma_reg_C PF13791.1 g83269.t1 - 0.0054 16.7 0 1.8 8.6 0 2 2 0 0 2 2 2 2 Sigma factor regulator C-terminal | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:81129-82677 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~81129-82677 Ctf8 PF09696.5 g74364.t1 - 0.0005 19.8 0 0.6 9.8 0 2.1 2 0 0 2 2 2 2 Ctf8 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:137293-138069 Augustus predicted protein sequence Tomato scaffold2538_contigs=14~137293-138069 RFX1_trans_act PF04589.8 g65263.t1 - 0.093 12.4 0.1 0.47 10.1 0 1.9 2 0 0 2 2 2 0 RFX1 transcription activation region | Ref_seq=scaffold2123_contigs=4, transcript_loc=scaffold2123_contigs=4:51255-58841 Augustus predicted protein sequence Tomato scaffold2123_contigs=4~51255-58841 DNA_pol_E_B PF04042.11 g1494.t1 - 2.4 7.3 6 53 2.9 4.1 2 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:46929-49696 Augustus predicted protein sequence Tomato scaffold204_contigs=2~46929-49696 UBN2 PF14223.1 g82873.t1 - 0.000013 24.9 2.8 0.000095 22.1 0 2.3 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:101052-102488 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~101052-102488 Kdo_hydroxy PF11004.3 g56167.t1 - 0.023 13.6 0.2 0.029 13.3 0.2 1.2 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:84956-87431 Augustus predicted protein sequence Tomato scaffold1792_contigs=8~84956-87431 Trypan_PARP PF05887.6 g67268.t1 - 8.4 6.2 12.4 11 5.8 8.6 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:18812-19303 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~18812-19303 Transposase_28 PF04195.7 g40896.t1 - 0.016 14.5 0 0.027 13.7 0 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:71363-73663 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~71363-73663 Fzo_mitofusin PF04799.8 g79551.t1 - 0.0066 15.8 2.1 0.0066 15.8 1.5 2.2 1 1 1 2 2 2 1 fzo-like conserved region | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:63580-64341 Augustus predicted protein sequence Tomato scaffold2698_contigs=8~63580-64341 DltD_M PF04918.7 g24100.t1 - 1.6 8.8 6.2 0.22 11.6 0.8 1.9 2 0 0 2 2 2 0 DltD central region | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:130603-131329 Augustus predicted protein sequence Tomato scaffold876_contigs=13~130603-131329 zf-BED PF02892.10 g81046.t1 - 0.03 14 1.8 0.072 12.8 1.3 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2721_contigs=4, transcript_loc=scaffold2721_contigs=4:52356-56529 Augustus predicted protein sequence Tomato scaffold2721_contigs=4~52356-56529 FH2 PF02181.18 g47255.t1 - 0.012 14.5 0.1 0.014 14.2 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:357477-357863 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~357477-357863 Imm10 PF15562.1 g38640.t1 - 1.5 8.6 4.2 11 5.9 2.9 2 1 1 0 1 1 1 0 Immunity protein 10 | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:155528-156194 Augustus predicted protein sequence Tomato scaffold1248_contigs=3~155528-156194 CCER1 PF15482.1 g64643.t1 - 0.077 12.6 1.4 0.1 12.1 0.9 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing glutamate-rich protein family 1 | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:344381-344752 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~344381-344752 Peptidase_M13 PF01431.16 g58985.t1 - 0.13 11.3 0 0.14 11.2 0 1.1 1 0 0 1 1 1 0 Peptidase family M13 | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:106387-107554 Augustus predicted protein sequence Tomato scaffold1886_contigs=2~106387-107554 Integrin_B_tail PF07965.7 g84932.t1 - 0.86 10 3.8 0.44 10.9 0.5 2 1 1 1 2 2 2 0 Integrin beta tail domain | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:15288-16380 Augustus predicted protein sequence Tomato scaffold2785_contigs=1~15288-16380 Transposase_28 PF04195.7 g79063.t1 - 0.072 12.3 0 0.14 11.4 0 1.4 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:47754-49588 Augustus predicted protein sequence Tomato scaffold2684_contigs=8~47754-49588 DUF4164 PF13747.1 g50534.t1 - 0.057 13.5 0 0.1 12.7 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:146953-147399 Augustus predicted protein sequence Tomato scaffold1566_contigs=4~146953-147399 HTH_20 PF12840.2 g78098.t1 - 0.022 14.5 0 8.3 6.3 0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:186324-189366 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~186324-189366 UPF0561 PF10573.4 g44701.t1 - 0.25 11.1 6.4 0.14 11.9 2.9 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:61380-66032 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~61380-66032 DUF2743 PF10899.3 g11665.t1 - 0.022 14.1 0.5 0.025 13.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:238298-240078 Augustus predicted protein sequence Tomato scaffold528_contigs=4~238298-240078 DUF3534 PF12053.3 g17750.t1 - 0.13 12.1 0 0.17 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:115903-116376 Augustus predicted protein sequence Tomato scaffold714_contigs=9~115903-116376 CALCOCO1 PF07888.6 g73555.t1 - 0.024 12.9 3.3 0.028 12.7 2.3 1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:29171-29569 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~29171-29569 TGF_beta_GS PF08515.7 g75842.t1 - 0.48 9.8 4.4 8.2 5.8 0 2.3 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:1-163 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~1-163 Delta_lysin PF05372.6 g14353.t1 - 0.082 12.2 0 0.14 11.4 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:1670-5306 Augustus predicted protein sequence Tomato scaffold594_contigs=19~1670-5306 DREV PF05219.7 g5105.t1 - 0.08 11.8 0 0.11 11.3 0 1.1 1 0 0 1 1 1 0 DREV methyltransferase | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:388039-388473 Augustus predicted protein sequence Tomato scaffold315_contigs=11~388039-388473 SipA PF09052.5 g79690.t1 - 0.18 10.1 2.7 0.22 9.8 1.9 1.1 1 0 0 1 1 1 0 Salmonella invasion protein A | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:197354-199945 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~197354-199945 C1_3 PF07649.7 g60521.t1 - 0.00002 24.4 1 0.000037 23.6 0.7 1.5 1 0 0 1 1 1 1 C1-like domain | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:43694-44773 Augustus predicted protein sequence Tomato scaffold1954_contigs=4~43694-44773 V_ATPase_I PF01496.14 g31016.t1 - 0.018 12.9 0.6 0.021 12.7 0.4 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:320377-322539 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~320377-322539 Cwf_Cwc_15 PF04889.7 g13229.t1 - 0.39 10.3 7.9 0.58 9.8 5.5 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:55292-56649 Augustus predicted protein sequence Tomato scaffold570_contigs=9~55292-56649 UBN2 PF14223.1 g81596.t1 - 0.0051 16.5 0.4 0.0057 16.4 0.3 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:223671-223892 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~223671-223892 HeLo PF14479.1 g60190.t1 - 0.023 14.4 3.3 0.028 14.1 2.3 1.2 1 0 0 1 1 1 0 Prion-inhibition and propagation | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:286128-287760 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~286128-287760 DUF3595 PF12166.3 g72818.t1 - 0.091 11.5 0 0.091 11.5 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3595) | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:102460-103577 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~102460-103577 DUF2157 PF09925.4 g21762.t1 - 0.1 12.2 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:33463-33978 Augustus predicted protein sequence Tomato scaffold814_contigs=3~33463-33978 GCN5L1 PF06320.8 g45519.t1 - 0.76 9.6 5.4 4.8 7 1.6 2.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:93979-97171 Augustus predicted protein sequence Tomato scaffold1448_contigs=3~93979-97171 FAM92 PF06730.6 g25772.t1 - 0.0084 15.4 0.2 0.0084 15.4 0.1 1.1 1 0 0 1 1 1 1 FAM92 protein | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:15135-15347 Augustus predicted protein sequence Tomato scaffold933_contigs=12~15135-15347 APG17 PF04108.7 g57553.t1 - 0.0031 16.3 1.9 0.004 16 1.3 1.1 1 0 0 1 1 1 1 Autophagy protein Apg17 | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:127579-128337 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~127579-128337 DUF2688 PF10892.3 g38754.t1 - 0.0029 17.2 0 0.0057 16.2 0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2688) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:234015-235025 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~234015-235025 PP_M1 PF03012.9 g27886.t1 - 0.017 14.4 1.7 0.02 14.2 1.2 1.2 1 0 0 1 1 1 0 Phosphoprotein | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:9052-9494 Augustus predicted protein sequence Tomato scaffold987_contigs=6~9052-9494 DUF4230 PF14014.1 g17059.t1 - 0.061 13.1 1.4 0.067 13 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4230) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:41246-41610 Augustus predicted protein sequence Tomato scaffold694_contigs=2~41246-41610 Molybdop_Fe4S4 PF04879.11 g20495.t1 - 0.022 14.5 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:795514-796551 Augustus predicted protein sequence Tomato scaffold774_contigs=20~795514-796551 zf-CCHC PF00098.18 g86564.t1 - 0.033 14.1 1.3 0.061 13.2 0.9 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:13012-14312 Augustus predicted protein sequence Tomato scaffold2873_contigs=1~13012-14312 Surf_Ag_VNR PF07244.10 g35977.t1 - 0.12 12.8 0 0.22 11.9 0 1.5 1 1 0 1 1 1 0 Surface antigen variable number repeat | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:134445-136434 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~134445-136434 CALCOCO1 PF07888.6 g14064.t1 - 0.0017 16.7 1.3 0.0028 16 0.6 1.5 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:348282-348521 Augustus predicted protein sequence Tomato scaffold583_contigs=2~348282-348521 ATP-synt_ab PF00006.20 g1620.t1 - 0.083 12.3 0.1 0.1 12.1 0 1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain | Ref_seq=scaffold211_contigs=1, transcript_loc=scaffold211_contigs=1:4745-5002 Augustus predicted protein sequence Tomato scaffold211_contigs=1~4745-5002 FMN_red PF03358.10 g24144.t1 - 0.063 12.7 0.2 0.071 12.6 0.1 1.2 1 0 0 1 1 1 0 NADPH-dependent FMN reductase | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:347308-347589 Augustus predicted protein sequence Tomato scaffold876_contigs=13~347308-347589 Daxx PF03344.10 g12315.t1 - 0.013 14 17.1 0.016 13.7 11.9 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:33069-33991 Augustus predicted protein sequence Tomato scaffold547_contigs=4~33069-33991 ATHILA PF03078.10 g21457.t1 - 0.063 11.8 0.1 0.098 11.2 0 1.4 1 1 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:48501-51402 Augustus predicted protein sequence Tomato scaffold799_contigs=2~48501-51402 Cupredoxin_1 PF13473.1 g47467.t1 - 0.0032 17.3 0.8 0.011 15.6 0.6 1.8 1 1 1 2 2 2 1 Cupredoxin-like domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:17763-18107 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~17763-18107 TAF4 PF05236.9 g45546.t1 - 0.023 14 5.5 0.021 14 3.8 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:20510-20746 Augustus predicted protein sequence Tomato scaffold1450_contigs=4~20510-20746 RnfC_N PF13375.1 g70274.t1 - 0.14 11.8 0 0.56 9.9 0 1.8 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:291265-291525 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~291265-291525 CSF-1 PF05337.6 g66285.t1 - 0.026 13.8 0.1 0.038 13.3 0.1 1.2 1 0 0 1 1 1 0 Macrophage colony stimulating factor-1 (CSF-1) | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:31252-35334 Augustus predicted protein sequence Tomato scaffold2159_contigs=6~31252-35334 CHD5 PF04420.9 g73901.t1 - 0.038 13.6 0.1 0.053 13.1 0.1 1.2 1 0 0 1 1 1 0 CHD5-like protein | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:134393-135506 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~134393-135506 ACCA PF03255.9 g75682.t1 - 0.0038 16.7 0 2.7 7.5 0 2.1 2 0 0 2 2 2 2 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:72805-76486 Augustus predicted protein sequence Tomato scaffold2606_contigs=15~72805-76486 SecG PF03840.9 g34055.t1 - 0.16 11.6 0.2 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 Preprotein translocase SecG subunit | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:245955-246335 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~245955-246335 DUF678 PF05077.7 g19528.t1 - 0.041 13.8 0.1 0.082 12.9 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF678) | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:17321-18966 Augustus predicted protein sequence Tomato scaffold754_contigs=7~17321-18966 ABC2_membrane_3 PF12698.2 g54382.t1 - 0.18 10.7 1.4 0.23 10.4 1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:195044-197078 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~195044-197078 Polysacc_lyase PF14099.1 g72274.t1 - 0.16 11.5 1.3 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 Polysaccharide lyase | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:907825-909576 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~907825-909576 zf-CCHC PF00098.18 g65182.t1 - 0.00012 21.8 1 0.00025 20.8 0.7 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:197442-198230 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~197442-198230 DUF417 PF04224.7 g73636.t1 - 0.054 12.8 0 0.063 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:421314-421631 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~421314-421631 DUF781 PF05612.7 g47398.t1 - 0.0017 17 0 0.0019 16.9 0 1.1 1 0 0 1 1 1 1 Mouse protein of unknown function (DUF781) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:389827-390197 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~389827-390197 HEV_ORF1 PF02444.11 g258.t1 - 0.84 9.8 5.5 0.21 11.7 1.5 1.7 1 1 1 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:6935-8833 Augustus predicted protein sequence Tomato scaffold17_contigs=4~6935-8833 rRNA_proc-arch PF13234.1 g87269.t1 - 0.004 16.3 0 0.0043 16.2 0 1 1 0 0 1 1 1 1 rRNA-processing arch domain | Ref_seq=scaffold2981_contigs=1, transcript_loc=scaffold2981_contigs=1:5585-5815 Augustus predicted protein sequence Tomato scaffold2981_contigs=1~5585-5815 CDtoxinA PF03498.9 g19732.t1 - 0.21 10.9 1.1 0.9 8.8 0.3 1.9 1 1 1 2 2 2 0 Cytolethal distending toxin A/C family | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:252482-253167 Augustus predicted protein sequence Tomato scaffold757_contigs=4~252482-253167 BLVR PF06375.6 g62940.t1 - 0.0042 16.9 3 0.0049 16.7 2.1 1 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:111910-112251 Augustus predicted protein sequence Tomato scaffold2015_contigs=7~111910-112251 WEMBL PF05701.6 g13569.t1 - 0.0048 15.4 1 0.0053 15.2 0.7 1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:21554-21967 Augustus predicted protein sequence Tomato scaffold578_contigs=5~21554-21967 Pox_A_type_inc PF04508.7 g64216.t1 - 0.01 15.5 0.3 0.54 10.1 0 3.1 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:490960-491627 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~490960-491627 Matrilin_ccoil PF10393.4 g87644.t1 - 0.024 13.9 0 0.042 13.2 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3527_contigs=1, transcript_loc=scaffold3527_contigs=1:1070-1507 Augustus predicted protein sequence Tomato scaffold3527_contigs=1~1070-1507 Gly-rich_Ago1 PF12764.2 g25067.t1 - 0.055 14.1 1.3 0.096 13.3 0.9 1.3 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:296276-296608 Augustus predicted protein sequence Tomato scaffold909_contigs=6~296276-296608 DUF3661 PF12400.3 g31816.t1 - 0.079 13 2.9 0.082 12.9 2 1.1 1 0 0 1 1 1 0 Vaculolar membrane protein | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:243484-243852 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~243484-243852 UCR_Fe-S_N PF10399.4 g70859.t1 - 0.13 11.4 0.1 0.2 10.8 0 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:356591-356851 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~356591-356851 Retrotrans_gag PF03732.12 g11040.t1 - 0.0094 15.9 0 0.015 15.3 0 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:48764-49654 Augustus predicted protein sequence Tomato scaffold512_contigs=2~48764-49654 UBN_AB PF14075.1 g62736.t1 - 0.019 14.6 0 0.023 14.3 0 1.2 1 0 0 1 1 1 0 Ubinuclein conserved middle domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:566942-572091 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~566942-572091 CAF-1_p150 PF11600.3 g78503.t1 - 0.0005 19.5 28.9 0.0005 19.5 20 2.4 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:139944-142067 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~139944-142067 HALZ PF02183.13 g79788.t1 - 0.00015 21.3 9.4 0.0023 17.5 1.3 3.1 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:615684-616295 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~615684-616295 zf-rbx1 PF12678.2 g35190.t1 - 0.1 12.7 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 RING-H2 zinc finger | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:587907-588206 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~587907-588206 FXR1P_C PF12235.3 g37124.t1 - 1.2 9.2 5.5 5.9 6.9 0.6 2.2 2 0 0 2 2 2 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:362533-365273 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~362533-365273 HTH_8 PF02954.14 g706.t1 - 0.046 13.2 0.1 0.17 11.4 0.1 2 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:195537-195884 Augustus predicted protein sequence Tomato scaffold95_contigs=9~195537-195884 DUF4307 PF14155.1 g40517.t1 - 0.0052 16.5 2.9 1.3 8.8 0.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4307) | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:255101-255785 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~255101-255785 Trypan_PARP PF05887.6 g44182.t1 - 2.1 8.1 20.2 3.7 7.3 14 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:34813-35854 Augustus predicted protein sequence Tomato scaffold1415_contigs=17~34813-35854 HnRNPA1 PF11627.3 g40256.t1 - 0.49 10.5 3.6 0.54 10.4 1.5 1.9 1 1 0 1 1 1 0 Nuclear factor hnRNPA1 | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:54532-54867 Augustus predicted protein sequence Tomato scaffold1297_contigs=3~54532-54867 DUF336 PF03928.9 g82526.t1 - 0.11 12.2 0 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF336) | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:168573-169176 Augustus predicted protein sequence Tomato scaffold2745_contigs=7~168573-169176 DUF4608 PF15381.1 g86801.t1 - 6.7 6.9 9.9 10 6.3 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2894_contigs=1, transcript_loc=scaffold2894_contigs=1:33931-34209 Augustus predicted protein sequence Tomato scaffold2894_contigs=1~33931-34209 Rab3-GTPase_cat PF13890.1 g65478.t1 - 0.045 13.1 0.5 0.049 13 0.3 1.1 1 0 0 1 1 1 0 Rab3 GTPase-activating protein catalytic subunit | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:168100-169500 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~168100-169500 DUF3395 PF11875.3 g24294.t1 - 1.7 8.2 7.8 2.8 7.5 5.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3395) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:43724-44340 Augustus predicted protein sequence Tomato scaffold880_contigs=9~43724-44340 DUF3322 PF11795.3 g55712.t1 - 0.32 10.6 3.3 0.47 10 2.3 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:15670-16658 Augustus predicted protein sequence Tomato scaffold1765_contigs=2~15670-16658 Herpes_UL6 PF01763.11 g26942.t1 - 0.01 14 4.6 0.011 13.9 3.2 1 1 0 0 1 1 1 0 Herpesvirus UL6 like | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:119708-120106 Augustus predicted protein sequence Tomato scaffold962_contigs=5~119708-120106 CbiQ PF02361.11 g86330.t1 - 0.11 12 0 0.15 11.5 0 1.3 1 0 0 1 1 1 0 Cobalt transport protein | Ref_seq=scaffold2852_contigs=1, transcript_loc=scaffold2852_contigs=1:14456-17092 Augustus predicted protein sequence Tomato scaffold2852_contigs=1~14456-17092 Angiomotin_C PF12240.3 g30684.t1 - 0.028 13.9 2.1 0.037 13.5 1.5 1.3 1 1 0 1 1 1 0 Angiomotin C terminal | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:57825-58124 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~57825-58124 CCDC144C PF14915.1 g40525.t1 - 0.057 12.3 1.5 0.059 12.2 1 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:276417-277078 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~276417-277078 CytadhesinP1 PF12378.3 g10341.t1 - 0.062 13.2 0.6 2.4 8.1 0 2.2 2 0 0 2 2 2 0 Trypsin-sensitive surface-exposed protein | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:300574-301103 Augustus predicted protein sequence Tomato scaffold494_contigs=9~300574-301103 HALZ PF02183.13 g25508.t1 - 0.000079 22.2 3.2 0.21 11.3 0 2.4 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:90076-90540 Augustus predicted protein sequence Tomato scaffold929_contigs=9~90076-90540 CAF-1_p150 PF11600.3 g70190.t1 - 0.00067 19.1 38.8 0.00079 18.8 26.9 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:39406-39840 Augustus predicted protein sequence Tomato scaffold2332_contigs=1~39406-39840 ATHILA PF03078.10 g23495.t1 - 0.000029 22.8 0.1 0.00003 22.7 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:6577-7041 Augustus predicted protein sequence Tomato scaffold862_contigs=2~6577-7041 ADIP PF11559.3 g64832.t1 - 0.079 12.8 0.1 0.12 12.2 0 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:66665-67222 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~66665-67222 ATHILA PF03078.10 g85699.t1 - 0.000000086 31.1 0 0.0073 14.9 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:17458-18099 Augustus predicted protein sequence Tomato scaffold2815_contigs=1~17458-18099 DUF106 PF01956.11 g35338.t1 - 0.96 8.9 3 1.5 8.3 2.1 1.2 1 0 0 1 1 1 0 Integral membrane protein DUF106 | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:105522-107750 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~105522-107750 Lactamase_B_3 PF13483.1 g67391.t1 - 0.0036 17 0.1 0.071 12.8 0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:40403-41758 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~40403-41758 PDGF_N PF04692.8 g44706.t1 - 0.025 15 0 0.04 14.3 0 1.3 1 0 0 1 1 1 0 Platelet-derived growth factor, N terminal region | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:72133-73250 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~72133-73250 DUF1992 PF09350.5 g43915.t1 - 0.06 13.1 0 91 2.9 0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1992) | Ref_seq=scaffold1395_contigs=11, transcript_loc=scaffold1395_contigs=11:18342-20100 Augustus predicted protein sequence Tomato scaffold1395_contigs=11~18342-20100 Acetyltransf_13 PF13880.1 g1848.t1 - 0.084 12.6 0.1 0.14 11.8 0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:18348-19165 Augustus predicted protein sequence Tomato scaffold218_contigs=4~18348-19165 MAP65_ASE1 PF03999.7 g12666.t1 - 1.8 7 6.2 2.6 6.5 4.3 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:685666-694617 Augustus predicted protein sequence Tomato scaffold556_contigs=11~685666-694617 NOA36 PF06524.7 g54235.t1 - 0.045 13 14.8 0.053 12.7 10.3 1.1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:99846-100274 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~99846-100274 KRTAP PF11759.3 g12243.t1 - 0.01 16 0.7 0.012 15.8 0.5 1.2 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:111495-111710 Augustus predicted protein sequence Tomato scaffold541_contigs=3~111495-111710 BUD22 PF09073.5 g6611.t1 - 0.83 8.6 37.4 0.93 8.4 25.9 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:192949-193383 Augustus predicted protein sequence Tomato scaffold379_contigs=8~192949-193383 CAF-1_p150 PF11600.3 g37477.t1 - 0.00000001 34.8 41.5 0.00000001 34.8 28.8 1.9 2 0 0 2 2 2 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:368557-369478 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~368557-369478 Cuticle_1 PF08140.6 g75006.t1 - 0.16 11.8 0 0.28 11 0 1.4 1 0 0 1 1 1 0 Crustacean cuticle protein repeat | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:14134-14550 Augustus predicted protein sequence Tomato scaffold2582_contigs=20~14134-14550 DUF2667 PF10868.3 g75610.t1 - 0.00041 20.6 0.4 0.7 10.3 0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2667) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:34005-35104 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~34005-35104 Med21 PF11221.3 g86868.t1 - 0.029 14.3 2.7 0.042 13.8 1.9 1.3 1 0 0 1 1 1 0 Subunit 21 of Mediator complex | Ref_seq=scaffold2903_contigs=1, transcript_loc=scaffold2903_contigs=1:16892-17491 Augustus predicted protein sequence Tomato scaffold2903_contigs=1~16892-17491 Phospholip_A2_3 PF09056.6 g24180.t1 - 0.17 12 2.5 0.79 9.9 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic phospholipase A2 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:521689-522627 Augustus predicted protein sequence Tomato scaffold876_contigs=13~521689-522627 zf-CCHC_5 PF14787.1 g59494.t1 - 0.03 13.8 0.3 0.059 12.8 0.2 1.5 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:83871-84212 Augustus predicted protein sequence Tomato scaffold1925_contigs=8~83871-84212 SR-25 PF10500.4 g7484.t1 - 1.4 8.3 9.8 1.9 7.8 6.8 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold402_contigs=1, transcript_loc=scaffold402_contigs=1:840-1130 Augustus predicted protein sequence Tomato scaffold402_contigs=1~840-1130 IP_trans PF02121.13 g8636.t1 - 0.0046 16.1 0.2 0.0078 15.4 0.1 1.3 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:310879-312145 Augustus predicted protein sequence Tomato scaffold429_contigs=9~310879-312145 Spore_GerAC PF05504.6 g66728.t1 - 0.014 15.1 0.2 0.023 14.4 0.1 1.3 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:186417-190645 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~186417-190645 DUF4380 PF14315.1 g69046.t1 - 0.04 13 0 0.049 12.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) | Ref_seq=scaffold2246_contigs=8, transcript_loc=scaffold2246_contigs=8:111984-112912 Augustus predicted protein sequence Tomato scaffold2246_contigs=8~111984-112912 CENP-F_leu_zip PF10473.4 g5828.t1 - 0.00078 19.3 3.5 0.00097 19 2.4 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold341_contigs=14, transcript_loc=scaffold341_contigs=14:3686-3976 Augustus predicted protein sequence Tomato scaffold341_contigs=14~3686-3976 DUF1347 PF07079.6 g70836.t1 - 0.021 13 0 0.025 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:285659-286009 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~285659-286009 eIF3g PF12353.3 g25406.t1 - 0.00028 20.8 0.3 0.00055 19.8 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:181146-181994 Augustus predicted protein sequence Tomato scaffold928_contigs=4~181146-181994 Myelin-PO_C PF10570.4 g39992.t1 - 0.21 11.6 1 11 6.2 0.1 3 1 1 1 3 3 3 0 Myelin-PO cytoplasmic C-term p65 binding region | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:30090-31337 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~30090-31337 DUF1985 PF09331.6 g11930.t1 - 0.000031 23.8 0 0.000055 23 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold532_contigs=7, transcript_loc=scaffold532_contigs=7:84323-87299 Augustus predicted protein sequence Tomato scaffold532_contigs=7~84323-87299 Cut8_N PF14482.1 g51466.t1 - 0.096 12.6 0.2 0.096 12.6 0.1 1.7 2 0 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1614_contigs=5, transcript_loc=scaffold1614_contigs=5:117265-118107 Augustus predicted protein sequence Tomato scaffold1614_contigs=5~117265-118107 RICTOR_N PF14664.1 g37433.t1 - 0.026 13.1 0 0.034 12.7 0 1.1 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, N-term | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:234913-235344 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~234913-235344 FAM177 PF14774.1 g22363.t1 - 0.031 14.1 0.4 0.031 14.1 0.3 1.7 2 0 0 2 2 2 0 FAM177 family | Ref_seq=scaffold827_contigs=4, transcript_loc=scaffold827_contigs=4:13730-14146 Augustus predicted protein sequence Tomato scaffold827_contigs=4~13730-14146 Pox_A11 PF05061.8 g73609.t1 - 0.0089 15.1 0.6 0.0094 15 0.4 1.1 1 0 0 1 1 1 1 Poxvirus A11 Protein | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:283178-283450 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~283178-283450 DegS PF05384.6 g32102.t1 - 0.045 12.9 0.1 0.062 12.5 0.1 1.2 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:380959-381399 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~380959-381399 Zip PF02535.17 g43229.t1 - 0.16 10.9 0.9 0.21 10.5 0.7 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:190602-191168 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~190602-191168 L-fibroin PF05849.6 g27423.t1 - 0.062 12.6 1.6 0.19 11 0.3 1.9 2 0 0 2 2 2 0 Fibroin light chain (L-fibroin) | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:41951-42605 Augustus predicted protein sequence Tomato scaffold979_contigs=3~41951-42605 Sugarporin_N PF11471.3 g30251.t1 - 0.024 14.2 3.1 0.024 14.2 2.2 1.6 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:270557-270898 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~270557-270898 DUF2750 PF11042.3 g10401.t1 - 0.019 14.9 0.7 0.044 13.8 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2750) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:59773-62483 Augustus predicted protein sequence Tomato scaffold498_contigs=12~59773-62483 DUF3089 PF11288.3 g58646.t1 - 0.038 13.1 0.2 0.042 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:84734-85033 Augustus predicted protein sequence Tomato scaffold1866_contigs=5~84734-85033 Gal4_dimer PF03902.8 g4413.t1 - 0.26 11.2 1.1 0.42 10.5 0.7 1.4 1 1 0 1 1 1 0 Gal4-like dimerisation domain | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:49758-51208 Augustus predicted protein sequence Tomato scaffold300_contigs=5~49758-51208 v110 PF01639.12 g69313.t1 - 0.0027 17.2 0 0.0045 16.5 0 1.3 1 0 0 1 1 1 1 Viral family 110 | Ref_seq=scaffold2270_contigs=3, transcript_loc=scaffold2270_contigs=3:32206-33109 Augustus predicted protein sequence Tomato scaffold2270_contigs=3~32206-33109 bZIP_1 PF00170.16 g69103.t1 - 0.0075 16.2 0.6 0.012 15.5 0.4 1.4 1 0 0 1 1 1 1 bZIP transcription factor | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:101775-102107 Augustus predicted protein sequence Tomato scaffold2253_contigs=17~101775-102107 PLA2G12 PF06951.6 g64460.t1 - 0.021 14.4 2.8 2 7.9 0.2 2.1 1 1 1 2 2 2 0 Group XII secretory phospholipase A2 precursor (PLA2G12) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:173084-177145 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~173084-177145 malic PF00390.14 g65938.t1 - 0.22 11 0.8 17 4.9 0 2.1 2 0 0 2 2 2 0 Malic enzyme, N-terminal domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:222153-223131 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~222153-223131 DUF3809 PF12723.2 g85463.t1 - 0.026 14.4 0.2 4.8 7 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3809) | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:9918-10208 Augustus predicted protein sequence Tomato scaffold2805_contigs=1~9918-10208 zf-CCHC_3 PF13917.1 g76989.t1 - 0.15 11.8 0 0.32 10.7 0 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:363619-363995 Augustus predicted protein sequence Tomato scaffold2643_contigs=16~363619-363995 RecO_N_2 PF13114.1 g31886.t1 - 0.0000079 25.5 0.1 0.11 12.1 0 2.6 2 1 1 3 3 3 2 RecO N terminal | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:17564-18633 Augustus predicted protein sequence Tomato scaffold1092_contigs=11~17564-18633 DUF4226 PF10774.4 g25811.t1 - 0.11 12.5 0.2 0.23 11.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4226) | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:208680-209036 Augustus predicted protein sequence Tomato scaffold933_contigs=12~208680-209036 Trypan_PARP PF05887.6 g12642.t1 - 0.23 11.2 4.4 0.25 11.1 3 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:586910-587284 Augustus predicted protein sequence Tomato scaffold556_contigs=11~586910-587284 zf-BED PF02892.10 g31776.t1 - 2.8 7.7 4.6 1.2 8.8 1.3 1.9 2 1 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:62199-66581 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~62199-66581 Colicin_C PF12106.3 g11959.t1 - 0.032 13.8 1.1 0.032 13.8 0.7 2.1 2 0 0 2 2 2 0 Colicin C terminal ribonuclease domain | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:53239-54111 Augustus predicted protein sequence Tomato scaffold534_contigs=3~53239-54111 TIL PF01826.12 g73253.t1 - 0.014 15.5 4.4 0.017 15.1 3 1.2 1 0 0 1 1 1 0 Trypsin Inhibitor like cysteine rich domain | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:1279885-1280133 Augustus predicted protein sequence Tomato scaffold2444_contigs=49~1279885-1280133 VanZ PF04892.7 g16633.t1 - 0.0093 15.9 1.3 0.011 15.6 0.7 1.3 1 1 0 1 1 1 1 VanZ like family | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:22447-22806 Augustus predicted protein sequence Tomato scaffold675_contigs=2~22447-22806 Couple_hipA PF13657.1 g14723.t1 - 0.026 14.8 0 0.066 13.5 0 1.6 1 0 0 1 1 1 0 HipA N-terminal domain | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:321881-326271 Augustus predicted protein sequence Tomato scaffold599_contigs=8~321881-326271 Connexin_CCC PF10582.4 g40150.t1 - 0.16 11.8 0.7 0.24 11.2 0.5 1.2 1 0 0 1 1 1 0 Gap junction channel protein cysteine-rich domain | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:228509-228901 Augustus predicted protein sequence Tomato scaffold1292_contigs=11~228509-228901 RD3 PF14473.1 g55767.t1 - 0.054 12.9 0.1 0.056 12.9 0.1 1.1 1 0 0 1 1 1 0 RD3 protein | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:9493-9735 Augustus predicted protein sequence Tomato scaffold1773_contigs=11~9493-9735 Allatostatin PF05953.7 g7086.t1 - 0.11 13 1.3 0.49 11 0.2 2.6 2 0 0 2 2 2 0 Allatostatin | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:72176-74032 Augustus predicted protein sequence Tomato scaffold387_contigs=7~72176-74032 CD99L2 PF12301.3 g87783.t1 - 0.066 12.8 0 51 3.4 0 3 3 0 0 3 3 3 0 CD99 antigen like protein 2 | Ref_seq=scaffold4079_contigs=1, transcript_loc=scaffold4079_contigs=1:1-1090 Augustus predicted protein sequence Tomato scaffold4079_contigs=1~1-1090 DUF2276 PF10040.4 g75078.t1 - 0.06 13.5 0 0.085 13 0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2276) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:144056-146558 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~144056-146558 DNA_photolyase PF00875.13 g71624.t1 - 0.017 14.8 0 0.034 13.9 0 1.4 1 0 0 1 1 1 0 DNA photolyase | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:92359-93093 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~92359-93093 Phage_G PF02306.10 g57.t1 - 0.00054 19.6 0.5 0.31 10.6 0 2.8 1 1 2 3 3 3 3 Major spike protein (G protein) | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:50405-50758 Augustus predicted protein sequence Tomato scaffold3_contigs=2~50405-50758 Calci_bind_CcbP PF11535.3 g48772.t1 - 0.13 12.5 0.5 0.27 11.4 0.3 1.6 1 1 1 2 2 2 0 Calcium binding | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1094169-1094801 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~1094169-1094801 ATHILA PF03078.10 g34425.t1 - 1.1E-009 37.4 0 0.0000039 25.7 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:70793-72445 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~70793-72445 Cortex-I_coil PF09304.5 g19235.t1 - 0.026 14.5 3.9 0.041 13.9 2.7 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:181252-184349 Augustus predicted protein sequence Tomato scaffold748_contigs=11~181252-184349 PsbP PF01789.11 g34628.t1 - 0.15 11.4 0 0.24 10.8 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:85537-89689 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~85537-89689 Adaptin_binding PF10199.4 g76710.t1 - 0.004 17.4 4.3 0.004 17.4 3 1.5 2 0 0 2 2 2 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:405889-410508 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~405889-410508 SmpA_OmlA PF04355.8 g70733.t1 - 0.062 12.9 0.2 21 4.8 0 2.9 3 0 0 3 3 3 0 SmpA / OmlA family | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:139511-147702 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~139511-147702 NAM-associated PF14303.1 g1567.t1 - 0.00035 20.9 11 0.00038 20.8 7.6 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold209_contigs=3, transcript_loc=scaffold209_contigs=3:35169-35486 Augustus predicted protein sequence Tomato scaffold209_contigs=3~35169-35486 Snurportin1 PF11538.3 g66153.t1 - 0.19 11.5 0.7 0.33 10.7 0.5 1.4 1 0 0 1 1 1 0 Snurportin1 | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:137926-138906 Augustus predicted protein sequence Tomato scaffold2152_contigs=6~137926-138906 Speriolin_N PF15058.1 g53771.t1 - 0.021 14.7 0.7 0.039 13.8 0.5 1.5 1 0 0 1 1 1 0 Speriolin N terminus | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:263787-264407 Augustus predicted protein sequence Tomato scaffold1702_contigs=7~263787-264407 PRP1_N PF06424.7 g3882.t1 - 0.089 13.1 0.5 0.12 12.7 0.3 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal | Ref_seq=scaffold282_contigs=5, transcript_loc=scaffold282_contigs=5:64176-64917 Augustus predicted protein sequence Tomato scaffold282_contigs=5~64176-64917 RVT_2 PF07727.9 g32177.t1 - 0.092 11.6 0 0.13 11.2 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:681699-684449 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~681699-684449 CEP19 PF14933.1 g3435.t1 - 0.1 12.9 9.1 5.2 7.3 0 3.1 3 0 0 3 3 3 0 CEP19-like protein | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:48673-52308 Augustus predicted protein sequence Tomato scaffold271_contigs=10~48673-52308 MRP-S26 PF14943.1 g15305.t1 - 0.086 12.3 2.5 0.12 11.9 1.8 1.2 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:71541-71948 Augustus predicted protein sequence Tomato scaffold624_contigs=9~71541-71948 MULE PF10551.4 g26387.t1 - 0.0000044 26.7 0 0.0000079 25.9 0 1.4 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:338088-338745 Augustus predicted protein sequence Tomato scaffold948_contigs=6~338088-338745 zf-BED PF02892.10 g53991.t1 - 0.011 15.4 2.5 0.011 15.4 1.7 1.8 2 1 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:1-3380 Augustus predicted protein sequence Tomato scaffold1710_contigs=11~1-3380 C1_1 PF00130.17 g24649.t1 - 0.11 12.2 5.1 0.39 10.4 3.5 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold892_contigs=7, transcript_loc=scaffold892_contigs=7:15248-16960 Augustus predicted protein sequence Tomato scaffold892_contigs=7~15248-16960 DUF295 PF03478.13 g14350.t1 - 0.087 12.2 0.2 8.3 5.8 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF295) | Ref_seq=scaffold592_contigs=8, transcript_loc=scaffold592_contigs=8:19277-20297 Augustus predicted protein sequence Tomato scaffold592_contigs=8~19277-20297 BAT2_N PF07001.6 g82877.t1 - 0.026 14.8 0.3 0.035 14.4 0.2 1.2 1 0 0 1 1 1 0 BAT2 N-terminus | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:124496-125055 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~124496-125055 Cornifin PF02389.10 g44800.t1 - 0.047 13.4 4.3 0.057 13.1 3 1.1 1 0 0 1 1 1 0 Cornifin (SPRR) family | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:69731-70260 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~69731-70260 p47_phox_C PF08944.6 g37869.t1 - 0.029 14.5 4.5 0.045 13.9 0.6 2.3 2 0 0 2 2 2 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:98400-107197 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~98400-107197 DUF3822 PF12864.2 g75778.t1 - 0.083 12.1 0 0.1 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3822) | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:91572-94503 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~91572-94503 ATHILA PF03078.10 g19303.t1 - 0.031 12.8 0 0.034 12.7 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:27841-28119 Augustus predicted protein sequence Tomato scaffold751_contigs=13~27841-28119 V_ATPase_I PF01496.14 g34107.t1 - 0.0044 14.9 2.2 0.0056 14.5 1.5 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:55489-59175 Augustus predicted protein sequence Tomato scaffold1142_contigs=5~55489-59175 FAM176 PF14851.1 g56611.t1 - 0.23 11.1 1.3 0.31 10.7 0.9 1.2 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:556465-556809 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~556465-556809 DEC-1_N PF04625.8 g21848.t1 - 0.089 11.4 2.6 0.094 11.3 1.8 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:43459-43716 Augustus predicted protein sequence Tomato scaffold817_contigs=11~43459-43716 ATHILA PF03078.10 g49701.t1 - 0.11 11 0 0.15 10.6 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:27368-29606 Augustus predicted protein sequence Tomato scaffold1548_contigs=4~27368-29606 DBD_Tnp_Mut PF03108.10 g4054.t1 - 4.4E-009 35.7 0 0.000000008 34.9 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold289_contigs=3, transcript_loc=scaffold289_contigs=3:8679-11399 Augustus predicted protein sequence Tomato scaffold289_contigs=3~8679-11399 Rota_NSP4 PF01452.11 g55939.t1 - 0.14 11.4 1 0.33 10.2 0.7 1.5 1 0 0 1 1 1 0 Rotavirus non structural protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:72903-74494 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~72903-74494 MiaE_2 PF13794.1 g32405.t1 - 0.11 11.9 1 0.48 9.8 0.5 1.9 2 0 0 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:115372-116043 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~115372-116043 Transposase_28 PF04195.7 g64215.t1 - 0.1 11.9 2.2 0.4 9.9 1.5 2 1 1 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:487422-490258 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~487422-490258 Dimer_Tnp_hAT PF05699.9 g76362.t1 - 0.14 11.8 0 0.3 10.7 0 1.5 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:174541-176814 Augustus predicted protein sequence Tomato scaffold2624_contigs=4~174541-176814 DUF2585 PF10755.4 g30053.t1 - 0.015 14.7 0.7 0.021 14.3 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2585) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:363684-368313 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~363684-368313 DBD_Tnp_Mut PF03108.10 g18217.t1 - 0.000000012 34.4 0 0.000000016 33.9 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:789693-790556 Augustus predicted protein sequence Tomato scaffold720_contigs=9~789693-790556 PLAC9 PF15205.1 g23521.t1 - 0.049 13.9 0.1 0.099 12.9 0 1.5 1 0 0 1 1 1 0 Placenta-specific protein 9 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:83712-85922 Augustus predicted protein sequence Tomato scaffold862_contigs=2~83712-85922 zf-CCHC PF00098.18 g28570.t1 - 0.0001 22 0.5 0.0001 22 0.4 1.8 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:9897-10262 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~9897-10262 zf-CCHC PF00098.18 g64872.t1 - 0.096 12.6 0.9 0.12 12.4 0 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:229094-229309 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~229094-229309 IgG_binding_B PF01378.12 g18854.t1 - 0.017 14.9 0 0.025 14.3 0 1.2 1 0 0 1 1 1 0 B domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:722196-722540 Augustus predicted protein sequence Tomato scaffold731_contigs=13~722196-722540 QueF_N PF14819.1 g74693.t1 - 0.11 12.6 0 0.18 11.9 0 1.4 1 0 0 1 1 1 0 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:408989-410879 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~408989-410879 FlhD PF05247.8 g80691.t1 - 0.03 14.3 5 0.25 11.3 0.4 2.7 1 1 1 2 2 2 0 Flagellar transcriptional activator (FlhD) | Ref_seq=scaffold2717_contigs=3, transcript_loc=scaffold2717_contigs=3:8381-9274 Augustus predicted protein sequence Tomato scaffold2717_contigs=3~8381-9274 ATG16 PF08614.6 g49077.t1 - 0.016 15 7.4 0.025 14.4 5.1 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:30600-35655 Augustus predicted protein sequence Tomato scaffold1525_contigs=4~30600-35655 TruB_N PF01509.13 g71629.t1 - 0.0079 16.3 0 0.0093 16.1 0 1.1 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:98463-99283 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~98463-99283 Myb_DNA-bind_3 PF12776.2 g43369.t1 - 0.087 13.4 0.1 1.3 9.7 0 2 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:204038-204487 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~204038-204487 SlyX PF04102.7 g42328.t1 - 0.57 10.6 3.4 0.8 10.1 0.7 2.4 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:200848-203149 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~200848-203149 DUF2085 PF09858.4 g3847.t1 - 0.46 10.5 3 0.98 9.5 2 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2085) | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:306446-306769 Augustus predicted protein sequence Tomato scaffold281_contigs=6~306446-306769 Tim44 PF04280.10 g72516.t1 - 0.0027 17.7 0.3 0.0029 17.5 0.2 1 1 0 0 1 1 1 1 Tim44-like domain | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:31675-32065 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~31675-32065 DUF2985 PF11204.3 g30205.t1 - 0.067 12.9 0.9 0.45 10.2 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:20915-21262 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~20915-21262 DUF736 PF05284.7 g65164.t1 - 0.098 12.4 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF736) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:121233-124260 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~121233-124260 NST1 PF13945.1 g47153.t1 - 0.074 13.1 0 0.087 12.8 0 1.2 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:48020-48391 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~48020-48391 FERM_M PF00373.13 g47730.t1 - 0.023 14.8 0.5 0.032 14.3 0.3 1.2 1 0 0 1 1 1 0 FERM central domain | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:289161-289502 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~289161-289502 DUF624 PF04854.9 g78714.t1 - 0.13 12.1 0.2 0.2 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF624 | Ref_seq=scaffold2676_contigs=4, transcript_loc=scaffold2676_contigs=4:13704-14000 Augustus predicted protein sequence Tomato scaffold2676_contigs=4~13704-14000 RFX_DNA_binding PF02257.10 g3423.t1 - 0.081 13 0.7 20 5.4 0 2.5 2 0 0 2 2 2 0 RFX DNA-binding domain | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:1-8237 Augustus predicted protein sequence Tomato scaffold271_contigs=10~1-8237 DUF106 PF01956.11 g79257.t1 - 0.047 13.2 0.1 0.069 12.6 0.1 1.2 1 0 0 1 1 1 0 Integral membrane protein DUF106 | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:67638-72071 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~67638-72071 CRAL_TRIO PF00650.15 g53980.t1 - 0.12 11.8 0.2 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 CRAL/TRIO domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:181449-181802 Augustus predicted protein sequence Tomato scaffold1709_contigs=7~181449-181802 QH-AmDH_gamma PF08992.6 g5194.t1 - 0.066 12.9 0.5 4.3 7.1 0 2.3 1 1 1 2 2 2 0 Quinohemoprotein amine dehydrogenase, gamma subunit | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:16831-19951 Augustus predicted protein sequence Tomato scaffold319_contigs=6~16831-19951 PMD PF10536.4 g32392.t1 - 0.0015 17.5 0 0.0033 16.4 0 1.5 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:22871-25984 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~22871-25984 Ebola_NP PF05505.7 g62510.t1 - 0.0051 14.9 2.2 0.0054 14.8 1.5 1.1 1 0 0 1 1 1 1 Ebola nucleoprotein | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:343219-344546 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~343219-344546 Hpt PF01627.18 g55042.t1 - 0.018 15 0 0.036 14 0 1.5 1 1 0 1 1 1 0 Hpt domain | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:65378-65755 Augustus predicted protein sequence Tomato scaffold1735_contigs=2~65378-65755 DUF4603 PF15376.1 g18454.t1 - 0.32 8.1 2.2 0.32 8.1 1.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4603) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:110299-110625 Augustus predicted protein sequence Tomato scaffold724_contigs=4~110299-110625 RF-1 PF00472.15 g35400.t1 - 0.64 9.8 7.2 1.5 8.6 3 2.4 1 1 1 2 2 2 0 RF-1 domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:304648-305523 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~304648-305523 DUF466 PF04328.8 g56153.t1 - 0.094 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF466) | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:1-1942 Augustus predicted protein sequence Tomato scaffold1792_contigs=8~1-1942 ABC2_membrane_4 PF12730.2 g18208.t1 - 0.0016 17.6 3.4 0.002 17.3 2.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:745925-747797 Augustus predicted protein sequence Tomato scaffold720_contigs=9~745925-747797 DUF4357 PF14267.1 g56005.t1 - 0.016 14.7 0.4 0.026 14 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4357) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:258657-260059 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~258657-260059 LSPR PF06049.7 g14634.t1 - 0.37 10.3 3.8 21 5.1 0.3 3.5 2 0 0 2 2 2 0 Coagulation Factor V LSPD Repeat | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:159757-163232 Augustus predicted protein sequence Tomato scaffold598_contigs=2~159757-163232 PAT1 PF09770.4 g81573.t1 - 6.6 4.8 8.7 6.7 4.8 6 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:128481-129130 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~128481-129130 zf-CCHC_4 PF14392.1 g52465.t1 - 0.026 14.1 2 0.056 13.1 1.4 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:123019-123468 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~123019-123468 DnaI_N PF07319.6 g46944.t1 - 0.042 14 0 0.062 13.5 0 1.3 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:883647-884024 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~883647-884024 HAUS4 PF14735.1 g34792.t1 - 0.072 12.3 0 0.089 12 0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:226615-227028 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~226615-227028 RILP PF11461.3 g85945.t1 - 0.038 14.1 2.5 0.043 13.9 0.5 2 2 0 0 2 2 2 0 Rab interacting lysosomal protein | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:27795-28311 Augustus predicted protein sequence Tomato scaffold2829_contigs=1~27795-28311 Transposase_28 PF04195.7 g36510.t1 - 0.092 12 0 0.16 11.2 0 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1198_contigs=3, transcript_loc=scaffold1198_contigs=3:17450-19736 Augustus predicted protein sequence Tomato scaffold1198_contigs=3~17450-19736 BBE PF08031.7 g42188.t1 - 0.031 14.1 0 1.1 9.2 0 2.4 2 1 0 2 2 2 0 Berberine and berberine like | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:308396-308785 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~308396-308785 DUF943 PF06092.7 g16515.t1 - 0.013 14.8 0.4 0.02 14.2 0.3 1.3 1 0 0 1 1 1 0 Enterobacterial putative membrane protein (DUF943) | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:156279-158968 Augustus predicted protein sequence Tomato scaffold672_contigs=7~156279-158968 DUF1912 PF08930.5 g84961.t1 - 0.11 12.6 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1912) | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:100572-100892 Augustus predicted protein sequence Tomato scaffold2785_contigs=1~100572-100892 RP-C_C PF11800.3 g47004.t1 - 0.036 13.7 0.8 0.036 13.7 0.5 1.4 2 0 0 2 2 2 0 Replication protein C C-terminal region | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:86583-86990 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~86583-86990 zf-CCHC PF00098.18 g74362.t1 - 0.000081 22.3 0.7 0.00016 21.4 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:135070-135957 Augustus predicted protein sequence Tomato scaffold2538_contigs=14~135070-135957 zf-CCHC PF00098.18 g60336.t1 - 0.0039 17 1.6 0.0063 16.3 1.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:1782-4548 Augustus predicted protein sequence Tomato scaffold1949_contigs=5~1782-4548 DUF2229 PF09989.4 g81631.t1 - 0.0024 17.3 0.3 0.0033 16.9 0.2 1.2 1 0 0 1 1 1 1 CoA enzyme activase uncharacterised domain (DUF2229) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:321041-322286 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~321041-322286 MecA_N PF05223.6 g54446.t1 - 0.02 14.9 0.9 1.6 8.8 0.1 2.2 1 1 1 2 2 2 0 NTF2-like N-terminal transpeptidase domain | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:122746-123180 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~122746-123180 GP41 PF00517.12 g80916.t1 - 0.1 12.1 3.6 0.18 11.3 2.5 1.4 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:281496-282236 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~281496-282236 KASH PF10541.4 g54048.t1 - 0.055 13.3 0.1 0.5 10.2 0 2.2 2 0 0 2 2 2 0 Nuclear envelope localisation domain | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:320738-321100 Augustus predicted protein sequence Tomato scaffold1710_contigs=11~320738-321100 KLRAQ PF10205.4 g25491.t1 - 0.13 12.3 2.4 2.4 8.2 0.2 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:46423-46899 Augustus predicted protein sequence Tomato scaffold929_contigs=9~46423-46899 DUF1985 PF09331.6 g78636.t1 - 0.018 14.8 0 0.023 14.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:94560-99175 Augustus predicted protein sequence Tomato scaffold2673_contigs=12~94560-99175 DUF4201 PF13870.1 g80967.t1 - 0.015 14.7 4.5 0.11 11.9 2.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:41876-46950 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~41876-46950 Cytochrom_B558a PF05038.8 g69910.t1 - 0.073 12.6 0.2 1.8 8.1 0.1 2 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:82454-83856 Augustus predicted protein sequence Tomato scaffold2312_contigs=19~82454-83856 CAF-1_p150 PF11600.3 g52944.t1 - 0.0052 16.1 30.6 0.0061 15.9 21.2 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1666_contigs=3, transcript_loc=scaffold1666_contigs=3:33536-33958 Augustus predicted protein sequence Tomato scaffold1666_contigs=3~33536-33958 TFIIA PF03153.8 g31234.t1 - 0.0018 18.2 9.5 0.0018 18.2 6.6 1 1 0 0 1 1 1 1 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:158115-158465 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~158115-158465 Neisseria_TspB PF05616.8 g32117.t1 - 0.067 11.5 5.6 0.09 11.1 3.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:441014-442167 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~441014-442167 NPV_P10 PF05531.7 g2874.t1 - 0.068 13.4 0.1 0.18 12 0.1 1.7 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:55739-55993 Augustus predicted protein sequence Tomato scaffold256_contigs=5~55739-55993 DUF2851 PF11013.3 g50113.t1 - 0.1 11.3 0.1 0.11 11.1 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:267145-267414 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~267145-267414 Tropomyosin PF00261.15 g40616.t1 - 0.054 12.5 5.8 0.094 11.7 4 1.3 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:11882-14046 Augustus predicted protein sequence Tomato scaffold1304_contigs=4~11882-14046 z-alpha PF02295.12 g41557.t1 - 0.009 15.7 0.1 0.017 14.8 0.1 1.4 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:118921-119890 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~118921-119890 DUF2826 PF11442.3 g23415.t1 - 0.061 12.9 0.9 0.082 12.5 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2826) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:145482-146421 Augustus predicted protein sequence Tomato scaffold859_contigs=6~145482-146421 NinF PF05810.7 g16724.t1 - 0.12 12.2 1.8 0.16 11.7 1.2 1.2 1 0 0 1 1 1 0 NinF protein | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:125093-125329 Augustus predicted protein sequence Tomato scaffold677_contigs=5~125093-125329 FH2 PF02181.18 g8168.t1 - 0.034 13 0.5 0.15 10.8 0.1 1.9 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:211836-216920 Augustus predicted protein sequence Tomato scaffold421_contigs=12~211836-216920 VPS28 PF03997.7 g17497.t1 - 0.13 11.8 0.1 0.17 11.5 0.1 1.1 1 0 0 1 1 1 0 VPS28 protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:221258-222109 Augustus predicted protein sequence Tomato scaffold707_contigs=5~221258-222109 DUF1816 PF08846.5 g20039.t1 - 0.15 11.7 0 0.24 11.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1816) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:72707-77024 Augustus predicted protein sequence Tomato scaffold767_contigs=5~72707-77024 DUF4611 PF15387.1 g20123.t1 - 0.1 12.7 0.1 0.16 12.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:370914-371174 Augustus predicted protein sequence Tomato scaffold767_contigs=5~370914-371174 MUG2_C PF08593.5 g10541.t1 - 0.81 9.9 3.7 19 5.5 0 2.7 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:561154-561552 Augustus predicted protein sequence Tomato scaffold498_contigs=12~561154-561552 DUF718 PF05336.8 g69553.t1 - 0.099 12.4 0 0.16 11.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF718) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:104949-109521 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~104949-109521 Oxysterol_BP PF01237.13 g11987.t1 - 0.0095 14.4 3.3 0.0091 14.5 2.3 1 1 0 0 1 1 1 1 Oxysterol-binding protein | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:15284-15592 Augustus predicted protein sequence Tomato scaffold535_contigs=8~15284-15592 ING PF12998.2 g54785.t1 - 0.0053 17 2.3 0.012 15.9 0 2.4 2 1 1 3 3 3 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:44202-45096 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~44202-45096 SHOCT PF09851.4 g36417.t1 - 0.24 10.9 2.7 0.42 10.1 1.9 1.4 1 0 0 1 1 1 0 Short C-terminal domain | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:488764-489075 Augustus predicted protein sequence Tomato scaffold1193_contigs=15~488764-489075 zf-BED PF02892.10 g21271.t1 - 0.02 14.6 2.4 0.06 13.1 1.7 1.8 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold796_contigs=1, transcript_loc=scaffold796_contigs=1:1-487 Augustus predicted protein sequence Tomato scaffold796_contigs=1~1-487 PROL5-SMR PF15621.1 g39230.t1 - 3.6 8 6.2 6.1 7.3 4.2 1.7 1 1 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:409379-409879 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~409379-409879 RVT_3 PF13456.1 g71295.t1 - 0.00000091 28.5 0.1 0.0000014 28 0.1 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:198497-198868 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~198497-198868 UBN2_2 PF14227.1 g3341.t1 - 0.00052 19.5 0 0.00094 18.7 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:34144-41982 Augustus predicted protein sequence Tomato scaffold270_contigs=10~34144-41982 Glutaredoxin2_C PF04399.8 g19579.t1 - 0.12 11.9 1.1 0.25 10.8 0.3 1.7 1 1 1 2 2 2 0 Glutaredoxin 2, C terminal domain | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:97098-97454 Augustus predicted protein sequence Tomato scaffold756_contigs=8~97098-97454 Anophelin PF10731.4 g84491.t1 - 1.8 8.7 5.1 3.4 7.8 3.5 1.4 1 0 0 1 1 1 0 Thrombin inhibitor from mosquito | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:10304-12622 Augustus predicted protein sequence Tomato scaffold2772_contigs=1~10304-12622 TMF_DNA_bd PF12329.3 g64664.t1 - 0.0021 17.8 1.6 0.0034 17.1 1.1 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold2080_contigs=18, transcript_loc=scaffold2080_contigs=18:69991-70317 Augustus predicted protein sequence Tomato scaffold2080_contigs=18~69991-70317 Adaptin_binding PF10199.4 g27363.t1 - 0.00035 20.8 3.9 0.00081 19.6 2.7 1.6 1 0 0 1 1 1 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:6303-8271 Augustus predicted protein sequence Tomato scaffold976_contigs=1~6303-8271 MIP-T3 PF10243.4 g4419.t1 - 0.053 12 2.3 0.061 11.7 1.6 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:63210-63941 Augustus predicted protein sequence Tomato scaffold300_contigs=5~63210-63941 CSD PF00313.17 g9437.t1 - 0.032 14 0.2 0.74 9.6 0.1 2.3 1 1 0 1 1 1 0 'Cold-shock' DNA-binding domain | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:326142-328576 Augustus predicted protein sequence Tomato scaffold455_contigs=9~326142-328576 DUF1470 PF07336.6 g33240.t1 - 0.048 14 1 0.059 13.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1470) | Ref_seq=scaffold1125_contigs=3, transcript_loc=scaffold1125_contigs=3:37981-38283 Augustus predicted protein sequence Tomato scaffold1125_contigs=3~37981-38283 Adaptin_binding PF10199.4 g28573.t1 - 0.00016 21.9 5.9 0.0002 21.6 4.1 1.2 1 0 0 1 1 1 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:23233-23760 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~23233-23760 FrhB_FdhB_C PF04432.8 g6301.t1 - 0.12 11.7 0.5 0.19 11.1 0.4 1.2 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:179227-181852 Augustus predicted protein sequence Tomato scaffold357_contigs=6~179227-181852 HPS3_N PF14761.1 g72058.t1 - 0.021 14.2 0 0.024 14 0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3 | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:99729-100073 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~99729-100073 UBN2 PF14223.1 g25022.t1 - 0.03 14 0.6 0.43 10.3 0 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:87855-88310 Augustus predicted protein sequence Tomato scaffold909_contigs=6~87855-88310 FH2 PF02181.18 g55469.t1 - 0.0046 15.8 0.1 0.0056 15.6 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:303633-304046 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~303633-304046 Chitin_bind_1 PF00187.14 g86978.t1 - 0.084 12.8 2.1 0.21 11.5 1.5 1.6 1 0 0 1 1 1 0 Chitin recognition protein | Ref_seq=scaffold2917_contigs=1, transcript_loc=scaffold2917_contigs=1:18302-19116 Augustus predicted protein sequence Tomato scaffold2917_contigs=1~18302-19116 A2M PF00207.17 g70067.t1 - 0.04 13.4 0.1 8.2 6 0 2.4 2 0 0 2 2 2 0 Alpha-2-macroglobulin family | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:46931-48133 Augustus predicted protein sequence Tomato scaffold2321_contigs=13~46931-48133 CENP-O PF09496.5 g26198.t1 - 0.027 14.6 0.4 0.038 14.2 0.3 1.4 1 1 0 1 1 1 0 Cenp-O kinetochore centromere component | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:95679-95963 Augustus predicted protein sequence Tomato scaffold945_contigs=10~95679-95963 DUF4283 PF14111.1 g6191.t1 - 0.0019 17.2 0.1 0.27 10.3 0 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4283) | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:59451-63678 Augustus predicted protein sequence Tomato scaffold353_contigs=4~59451-63678 rve PF00665.21 g25278.t1 - 0.044 13.8 0 0.051 13.6 0 1.1 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold927_contigs=11, transcript_loc=scaffold927_contigs=11:39463-39855 Augustus predicted protein sequence Tomato scaffold927_contigs=11~39463-39855 FlxA PF14282.1 g23388.t1 - 0.012 15.6 4.2 0.012 15.6 2.9 1.9 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:52965-53455 Augustus predicted protein sequence Tomato scaffold859_contigs=6~52965-53455 DAP10 PF07213.6 g63113.t1 - 0.12 12.1 0 0.16 11.7 0 1.2 1 0 0 1 1 1 0 DAP10 membrane protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:216728-218210 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~216728-218210 DBD_Tnp_Mut PF03108.10 g85012.t1 - 0.0000089 25.1 0.2 0.000012 24.7 0.2 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2787_contigs=1, transcript_loc=scaffold2787_contigs=1:84448-85503 Augustus predicted protein sequence Tomato scaffold2787_contigs=1~84448-85503 PLATZ PF04640.9 g87815.t1 - 0.087 13 0.3 0.22 11.7 0 1.7 2 0 0 2 2 2 0 PLATZ transcription factor | Ref_seq=scaffold4230_contigs=1, transcript_loc=scaffold4230_contigs=1:655-954 Augustus predicted protein sequence Tomato scaffold4230_contigs=1~655-954 DUF1858 PF08984.6 g46651.t1 - 0.1 12.2 0 0.19 11.3 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1858) | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:50070-50988 Augustus predicted protein sequence Tomato scaffold1484_contigs=2~50070-50988 Plant_NMP1 PF06694.6 g26033.t1 - 0.07 12 0 0.11 11.4 0 1.2 1 0 0 1 1 1 0 Plant nuclear matrix protein 1 (NMP1) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:210968-214184 Augustus predicted protein sequence Tomato scaffold942_contigs=10~210968-214184 Levi_coat PF01819.12 g79192.t1 - 0.09 12.3 0 0.12 11.9 0 1.2 1 0 0 1 1 1 0 Levivirus coat protein | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:199159-200360 Augustus predicted protein sequence Tomato scaffold2685_contigs=11~199159-200360 Transposase_24 PF03004.9 g77856.t1 - 0.000063 22.9 0 0.000082 22.5 0 1.3 1 1 0 1 1 1 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:624352-625064 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~624352-625064 MHCassoc_trimer PF08831.5 g43317.t1 - 0.044 13.6 1.5 0.079 12.8 1 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:19793-20377 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~19793-20377 TP53IP5 PF15331.1 g63404.t1 - 0.2 11.5 3.9 0.25 11.2 2.7 1.1 1 0 0 1 1 1 0 Cellular tumour antigen p53-inducible 5 | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:144542-144967 Augustus predicted protein sequence Tomato scaffold2035_contigs=8~144542-144967 CCDC144C PF14915.1 g77979.t1 - 0.098 11.5 11.2 0.14 11 7.7 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:119564-124437 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~119564-124437 Trypan_PARP PF05887.6 g72348.t1 - 3.7 7.3 10.1 6.4 6.5 7 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1182997-1184773 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1182997-1184773 ATHILA PF03078.10 g15299.t1 - 0.00019 20.1 0 0.043 12.4 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:60870-61806 Augustus predicted protein sequence Tomato scaffold624_contigs=9~60870-61806 DUF1985 PF09331.6 g23811.t1 - 0.00056 19.7 0.2 0.0015 18.3 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:2434-8328 Augustus predicted protein sequence Tomato scaffold866_contigs=9~2434-8328 DUF3412 PF11892.3 g65474.t1 - 0.081 12.7 0 0.12 12.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3412) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:155915-156553 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~155915-156553 Rho_RNA_bind PF07497.7 g46013.t1 - 0.12 11.9 0 0.23 11.1 0 1.5 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:108599-110944 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~108599-110944 PriCT_1 PF08708.6 g9646.t1 - 0.0033 17.1 0.3 0.0077 16 0.1 1.6 2 0 0 2 2 2 1 Primase C terminal 1 (PriCT-1) | Ref_seq=scaffold463_contigs=2, transcript_loc=scaffold463_contigs=2:35431-36179 Augustus predicted protein sequence Tomato scaffold463_contigs=2~35431-36179 PAT1 PF09770.4 g5901.t1 - 6.3 4.9 12 6.9 4.7 8.3 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:82619-83158 Augustus predicted protein sequence Tomato scaffold344_contigs=14~82619-83158 Curto_V3 PF07436.6 g57462.t1 - 2.4 8.3 4.5 1 9.5 1 2 1 1 1 2 2 2 0 Curtovirus V3 protein | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:157519-161099 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~157519-161099 HrpJ PF07201.6 g71817.t1 - 0.024 14.6 0.6 0.048 13.6 0.2 1.5 2 0 0 2 2 2 0 HrpJ-like domain | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:81437-82951 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~81437-82951 Leader_Trp PF08255.6 g30798.t1 - 1.3 8.8 5.9 0.33 10.7 0.8 2.6 2 0 0 2 2 2 0 Trp-operon Leader Peptide | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:401004-401417 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~401004-401417 APG6 PF04111.7 g44792.t1 - 0.012 14.7 0.7 0.014 14.5 0.5 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:31724-32085 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~31724-32085 WEMBL PF05701.6 g37734.t1 - 0.02 13.3 6.3 0.028 12.8 4.4 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:122696-127364 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~122696-127364 Peptidase_C93 PF06035.6 g63329.t1 - 0.013 14.9 0 0.02 14.3 0 1.3 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:302362-306481 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~302362-306481 ING PF12998.2 g32292.t1 - 0.011 16 0.1 0.011 16 0.1 2.4 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1102_contigs=2, transcript_loc=scaffold1102_contigs=2:11955-12944 Augustus predicted protein sequence Tomato scaffold1102_contigs=2~11955-12944 DUF2744 PF10910.3 g86414.t1 - 0.083 12.7 0.2 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2744) | Ref_seq=scaffold2860_contigs=1, transcript_loc=scaffold2860_contigs=1:14705-15729 Augustus predicted protein sequence Tomato scaffold2860_contigs=1~14705-15729 DUF515 PF04415.7 g23742.t1 - 0.66 8.1 5.2 0.78 7.9 3.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:177108-177735 Augustus predicted protein sequence Tomato scaffold865_contigs=7~177108-177735 SNase PF00565.12 g22263.t1 - 0.053 13.7 0.3 0.1 12.8 0.1 1.6 1 1 0 1 1 1 0 Staphylococcal nuclease homologue | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:241686-242337 Augustus predicted protein sequence Tomato scaffold825_contigs=10~241686-242337 SPR1 PF15356.1 g30208.t1 - 0.0047 17.2 2.3 0.0056 17 1.6 1.1 1 0 0 1 1 1 1 Psoriasis susceptibility locus 2 | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:26112-26405 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~26112-26405 MYT1 PF08474.6 g50240.t1 - 0.031 13.7 0.2 0.16 11.4 0 1.9 1 1 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:7886-8476 Augustus predicted protein sequence Tomato scaffold1562_contigs=2~7886-8476 DUF3927 PF13064.1 g66088.t1 - 0.034 13.6 0.2 0.085 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3927) | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:119786-120100 Augustus predicted protein sequence Tomato scaffold2148_contigs=3~119786-120100 DUF3323 PF11796.3 g17769.t1 - 0.12 11.7 3.5 0.15 11.3 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:175547-176065 Augustus predicted protein sequence Tomato scaffold714_contigs=9~175547-176065 DUF3893 PF13032.1 g13737.t1 - 0.1 12.7 0 0.19 11.8 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:3533-4282 Augustus predicted protein sequence Tomato scaffold582_contigs=8~3533-4282 DUF2457 PF10446.4 g32837.t1 - 0.03 13 6.3 0.042 12.5 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:144432-149419 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~144432-149419 ATP-synt_D PF01813.12 g69273.t1 - 0.022 14.3 0.7 0.032 13.7 0 1.6 2 0 0 2 2 2 0 ATP synthase subunit D | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:14303-14680 Augustus predicted protein sequence Tomato scaffold2268_contigs=6~14303-14680 NTR2 PF15458.1 g58434.t1 - 0.0074 15.5 2.1 0.015 14.5 1.5 1.5 1 0 0 1 1 1 1 Nineteen complex-related protein 2 | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:50398-51394 Augustus predicted protein sequence Tomato scaffold1862_contigs=6~50398-51394 DUF656 PF04920.7 g19227.t1 - 0.1 12.2 1.5 0.19 11.4 1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF656) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:158866-159532 Augustus predicted protein sequence Tomato scaffold748_contigs=11~158866-159532 Peptidase_S46 PF10459.4 g6226.t1 - 0.0098 14.3 3.6 0.011 14.2 2.5 1.1 1 0 0 1 1 1 1 Peptidase S46 | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:59118-60796 Augustus predicted protein sequence Tomato scaffold355_contigs=5~59118-60796 XhlA PF10779.4 g58462.t1 - 0.00052 19.8 1.4 0.00067 19.5 1 1.1 1 0 0 1 1 1 1 Haemolysin XhlA | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:24717-24941 Augustus predicted protein sequence Tomato scaffold1863_contigs=15~24717-24941 RVT_3 PF13456.1 g36144.t1 - 0.02 14.6 0.2 0.071 12.8 0.2 1.9 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:503148-506478 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~503148-506478 DUF1510 PF07423.6 g4795.t1 - 0.014 14.7 11.9 0.034 13.5 8.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:70960-72032 Augustus predicted protein sequence Tomato scaffold308_contigs=4~70960-72032 DUF4207 PF13904.1 g36205.t1 - 0.012 15 17 0.013 14.8 11.8 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4207) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:191349-191741 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~191349-191741 DUF3453 PF11935.3 g6605.t1 - 0.016 14.5 0 0.022 14.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3453) | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:183701-184204 Augustus predicted protein sequence Tomato scaffold379_contigs=8~183701-184204 Pox_Ag35 PF03286.9 g56135.t1 - 0.049 13.1 5.5 0.051 13 3.8 1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:27245-27559 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~27245-27559 IFT43 PF15305.1 g86603.t1 - 0.043 13.8 0.6 0.055 13.4 0.4 1.3 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:605-1015 Augustus predicted protein sequence Tomato scaffold2876_contigs=1~605-1015 MtlR PF05068.7 g58914.t1 - 0.03 13.7 0.4 0.034 13.5 0.3 1.1 1 0 0 1 1 1 0 Mannitol repressor | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:254584-254967 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~254584-254967 BSP_II PF05432.6 g3225.t1 - 0.027 13.7 5.3 0.035 13.3 3.6 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:95836-96505 Augustus predicted protein sequence Tomato scaffold264_contigs=10~95836-96505 Resistin PF06954.6 g63294.t1 - 0.0095 16.1 0.1 0.01 16.1 0.1 1.1 1 0 0 1 1 1 1 Resistin | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:104040-104300 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~104040-104300 EBV-NA3 PF05009.7 g29643.t1 - 0.14 11.4 1.6 0.15 11.3 1.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:367079-367306 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~367079-367306 T4_Gp59_N PF08993.5 g31033.t1 - 0.018 15 0.2 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 T4 gene Gp59 loader of gp41 DNA helicase | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:387960-388277 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~387960-388277 Delta_lysin PF05372.6 g87630.t1 - 0.025 13.9 0 0.041 13.2 0 1.2 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold3482_contigs=1, transcript_loc=scaffold3482_contigs=1:1-365 Augustus predicted protein sequence Tomato scaffold3482_contigs=1~1-365 SPX PF03105.14 g72265.t1 - 0.1 12.3 4.5 0.4 10.4 2.2 2.1 1 1 1 2 2 2 0 SPX domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:864804-868142 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~864804-868142 ExoD PF06055.7 g71933.t1 - 0.079 12 0 0.18 10.9 0 1.6 1 1 0 1 1 1 0 Exopolysaccharide synthesis, ExoD | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:379550-382637 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~379550-382637 zf-CCHC PF00098.18 g45004.t1 - 0.0059 16.4 0.2 0.0088 15.9 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:498643-499224 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~498643-499224 Bombinin PF05298.6 g72115.t1 - 0.084 12.3 0.1 0.098 12.1 0 1.1 1 0 0 1 1 1 0 Bombinin | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:148533-148841 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~148533-148841 DUF1543 PF07566.7 g19587.t1 - 0.016 14.6 0.1 0.028 13.9 0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1543) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:110129-112647 Augustus predicted protein sequence Tomato scaffold756_contigs=8~110129-112647 bZIP_1 PF00170.16 g81598.t1 - 0.019 14.9 0.9 0.034 14 0.6 1.4 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:230038-230451 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~230038-230451 DUF2919 PF11143.3 g5354.t1 - 0.027 14.3 0.1 0.033 14 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2919) | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:135072-135673 Augustus predicted protein sequence Tomato scaffold325_contigs=5~135072-135673 Complex1_49kDa PF00346.14 g27535.t1 - 0.043 12.8 0 0.052 12.5 0 1.1 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:469135-469386 Augustus predicted protein sequence Tomato scaffold980_contigs=13~469135-469386 SASP PF00269.15 g17237.t1 - 3.7 7.4 6.9 19 5.2 0 2.5 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:72948-73238 Augustus predicted protein sequence Tomato scaffold701_contigs=5~72948-73238 DUF2370 PF10176.4 g68402.t1 - 9.1 5.5 8.5 5.8 6.1 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2370) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:78046-79414 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~78046-79414 UPF0139 PF03669.8 g67328.t1 - 0.1 12.1 0.6 0.17 11.3 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0139) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:235296-235649 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~235296-235649 DUF4521 PF15021.1 g70153.t1 - 0.034 13.7 0.2 0.038 13.5 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:215120-216330 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~215120-216330 BUD22 PF09073.5 g52675.t1 - 0.043 12.8 43.1 0.051 12.6 29.9 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:128452-129500 Augustus predicted protein sequence Tomato scaffold1647_contigs=32~128452-129500 YdjO PF14169.1 g50542.t1 - 0.15 11.5 0.4 0.15 11.5 0.3 2.2 3 0 0 3 3 3 0 Cold-inducible protein YdjO | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:179215-180324 Augustus predicted protein sequence Tomato scaffold1566_contigs=4~179215-180324 Sigma54_AID PF00309.15 g84054.t1 - 0.058 12.8 0.9 0.092 12.2 0.2 1.6 2 0 0 2 2 2 0 Sigma-54 factor, Activator interacting domain (AID) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:229977-230710 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~229977-230710 DUF2526 PF10735.4 g28732.t1 - 0.041 13.8 0.1 0.063 13.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2526) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:117657-118049 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~117657-118049 VID27 PF08553.5 g80698.t1 - 5 5.2 13.2 6.5 4.8 9.2 1.1 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:13564-16359 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~13564-16359 CBP4 PF07960.6 g69820.t1 - 0.0069 16 1.7 0.011 15.4 1.2 1.3 1 0 0 1 1 1 1 CBP4 | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:63120-63851 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~63120-63851 Transformer PF06495.6 g25639.t1 - 0.44 10.4 4.1 0.47 10.3 2.8 1.1 1 0 0 1 1 1 0 Fruit fly transformer protein | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:91500-93090 Augustus predicted protein sequence Tomato scaffold930_contigs=4~91500-93090 Cut8_N PF14482.1 g37523.t1 - 0.19 11.7 4.4 7.5 6.6 0.1 3 2 0 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:67132-68755 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~67132-68755 V_ATPase_I PF01496.14 g26801.t1 - 0.0021 16 5.1 0.0027 15.6 3.6 1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:63133-64262 Augustus predicted protein sequence Tomato scaffold961_contigs=8~63133-64262 PAT1 PF09770.4 g21582.t1 - 7.1 4.7 10.6 7.3 4.6 7.3 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:19202-19573 Augustus predicted protein sequence Tomato scaffold802_contigs=3~19202-19573 OAD_gamma PF04277.8 g33925.t1 - 0.87 10 3.4 0.58 10.5 0.5 2.1 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1138_contigs=6, transcript_loc=scaffold1138_contigs=6:72709-74183 Augustus predicted protein sequence Tomato scaffold1138_contigs=6~72709-74183 UBN2_2 PF14227.1 g40291.t1 - 0.012 15.1 0 0.014 14.9 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:22229-22510 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~22229-22510 DUF4315 PF14193.1 g9411.t1 - 5.7 6.9 6.4 2.1 8.3 2.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:198459-201144 Augustus predicted protein sequence Tomato scaffold455_contigs=9~198459-201144 NAM-associated PF14303.1 g39425.t1 - 0.019 15.3 12.1 0.035 14.4 8.4 1.5 1 1 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:382951-383268 Augustus predicted protein sequence Tomato scaffold1269_contigs=10~382951-383268 Siah-Interact_N PF09032.6 g64427.t1 - 0.41 10.7 11.9 0.64 10.1 8.3 1.3 1 0 0 1 1 1 0 Siah interacting protein, N terminal | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:83083-83774 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~83083-83774 DUF1682 PF07946.9 g79869.t1 - 0.0098 14.7 2.5 0.0098 14.7 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:79750-80136 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~79750-80136 Tim54 PF11711.3 g84406.t1 - 0.0021 16.7 2.5 0.0026 16.4 1.7 1.1 1 0 0 1 1 1 1 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:346-1287 Augustus predicted protein sequence Tomato scaffold2769_contigs=1~346-1287 UBN2_2 PF14227.1 g43224.t1 - 0.054 13 0 0.083 12.4 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:174696-175178 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~174696-175178 RVT_3 PF13456.1 g17455.t1 - 0.000045 23.1 0 0.000065 22.6 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:71823-72128 Augustus predicted protein sequence Tomato scaffold707_contigs=5~71823-72128 zf-CCHC PF00098.18 g37506.t1 - 0.0024 17.7 0.3 0.0035 17.2 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:9513-9857 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~9513-9857 DUF4527 PF15030.1 g6997.t1 - 0.024 13.9 0 0.036 13.3 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4527) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:129697-130035 Augustus predicted protein sequence Tomato scaffold386_contigs=10~129697-130035 DUF1324 PF07038.6 g7157.t1 - 0.028 14.4 0.1 0.043 13.8 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1324) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:301703-301957 Augustus predicted protein sequence Tomato scaffold387_contigs=7~301703-301957 PP2 PF14299.1 g9154.t1 - 0.014 14.8 0.2 0.019 14.3 0.1 1.4 1 0 0 1 1 1 0 Phloem protein 2 | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:109645-110433 Augustus predicted protein sequence Tomato scaffold448_contigs=2~109645-110433 IFP_35_N PF07334.8 g23924.t1 - 0.097 12.6 2.9 0.27 11.2 2 1.8 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:125233-125757 Augustus predicted protein sequence Tomato scaffold874_contigs=5~125233-125757 RnfC_N PF13375.1 g4037.t1 - 0.086 12.5 0.2 0.098 12.3 0.1 1.1 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain | Ref_seq=scaffold287_contigs=2, transcript_loc=scaffold287_contigs=2:29538-29801 Augustus predicted protein sequence Tomato scaffold287_contigs=2~29538-29801 Sigma70_ner PF04546.8 g45517.t1 - 0.055 13 0.1 0.11 12.1 0 1.5 1 1 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:90516-91968 Augustus predicted protein sequence Tomato scaffold1448_contigs=3~90516-91968 Osteopontin PF00865.13 g4561.t1 - 0.017 14.3 0.1 0.03 13.5 0 1.3 1 0 0 1 1 1 0 Osteopontin | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:112530-116815 Augustus predicted protein sequence Tomato scaffold303_contigs=3~112530-116815 DUF2883 PF11097.3 g17740.t1 - 0.072 13.2 0 0.15 12.1 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2883) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:76489-77033 Augustus predicted protein sequence Tomato scaffold714_contigs=9~76489-77033 DUF1524 PF07510.6 g46361.t1 - 0.083 12.7 0 0.089 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) | Ref_seq=scaffold1481_contigs=2, transcript_loc=scaffold1481_contigs=2:5156-5452 Augustus predicted protein sequence Tomato scaffold1481_contigs=2~5156-5452 zf-CCHC PF00098.18 g27701.t1 - 0.0016 18.3 1.9 0.0032 17.3 1.3 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:368508-368852 Augustus predicted protein sequence Tomato scaffold983_contigs=13~368508-368852 DUF2014 PF09427.5 g74303.t1 - 0.02 14 0.1 0.036 13.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2014) | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:59580-59942 Augustus predicted protein sequence Tomato scaffold2530_contigs=9~59580-59942 Bombolitin PF08096.6 g29260.t1 - 0.061 13.4 0.3 0.15 12.1 0.2 1.7 1 0 0 1 1 1 0 Bombolitin family | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:113061-114398 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~113061-114398 HrpB7 PF09486.5 g36112.t1 - 0.084 12.8 0.7 0.14 12.1 0.5 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:384063-385032 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~384063-385032 DUF605 PF04652.11 g337.t1 - 8.5 5.6 17.1 9.3 5.5 11.8 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:25123-25647 Augustus predicted protein sequence Tomato scaffold18_contigs=2~25123-25647 Prominin PF05478.6 g35381.t1 - 0.016 12.8 0.3 0.021 12.3 0.2 1.2 1 0 0 1 1 1 0 Prominin | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:267783-268295 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~267783-268295 UPF0242 PF06785.6 g67771.t1 - 0.081 11.5 0.4 0.12 11 0.3 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:114150-116724 Augustus predicted protein sequence Tomato scaffold2189_contigs=3~114150-116724 DUF241 PF03087.9 g84633.t1 - 0.0065 15.9 3.1 0.0075 15.7 2.1 1.1 1 0 0 1 1 1 1 Arabidopsis protein of unknown function | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:12194-12595 Augustus predicted protein sequence Tomato scaffold2776_contigs=1~12194-12595 DUF2909 PF11137.3 g79300.t1 - 0.064 13 0.3 0.15 11.8 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:205835-206400 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~205835-206400 DUF1985 PF09331.6 g30.t1 - 0.00000026 30.5 0 0.00000028 30.4 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2_contigs=1, transcript_loc=scaffold2_contigs=1:36622-36918 Augustus predicted protein sequence Tomato scaffold2_contigs=1~36622-36918 AcylCoA_dehyd_C PF12186.3 g48805.t1 - 0.068 13 0.2 0.15 11.9 0.2 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase C terminal | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:68362-72244 Augustus predicted protein sequence Tomato scaffold1507_contigs=2~68362-72244 ECH_C PF13766.1 g8163.t1 - 0.00034 20.7 0.3 0.00041 20.4 0.2 1.1 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:203246-203551 Augustus predicted protein sequence Tomato scaffold421_contigs=12~203246-203551 HALZ PF02183.13 g70278.t1 - 0.12 12.1 0.6 0.26 11 0.4 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:318962-319581 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~318962-319581 IncA PF04156.9 g37152.t1 - 0.013 15.1 7 0.015 14.9 4.8 1.1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:489705-490465 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~489705-490465 DUF1848 PF08902.6 g67444.t1 - 0.068 12.7 1.4 0.081 12.4 1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:317908-318995 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~317908-318995 Fzo_mitofusin PF04799.8 g28274.t1 - 0.23 10.8 6.1 0.52 9.6 0.7 2.3 1 1 0 2 2 2 0 fzo-like conserved region | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:124822-125921 Augustus predicted protein sequence Tomato scaffold994_contigs=5~124822-125921 RVT_3 PF13456.1 g54642.t1 - 6.7E-009 35.4 0.8 0.00025 20.7 0 2.2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:13806-14180 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~13806-14180 CobT PF06213.7 g69441.t1 - 0.0054 15.8 15.9 0.0073 15.4 11 1.1 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold2278_contigs=9, transcript_loc=scaffold2278_contigs=9:175918-177826 Augustus predicted protein sequence Tomato scaffold2278_contigs=9~175918-177826 Toxin_20 PF08089.6 g80695.t1 - 0.13 12.2 1 0.27 11.1 0.7 1.5 1 0 0 1 1 1 0 Huwentoxin-II family | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:6480-6869 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~6480-6869 Vir_act_alpha_C PF10400.4 g82140.t1 - 0.12 12.7 0.1 0.13 12.6 0.1 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:431381-431593 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~431381-431593 DUF1777 PF08648.7 g61431.t1 - 1.1 8.9 25.7 1.3 8.7 17.8 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1777) | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:180219-180509 Augustus predicted protein sequence Tomato scaffold1970_contigs=14~180219-180509 Tachykinin PF02202.11 g36786.t1 - 0.29 10.9 0 0.29 10.9 0 2.2 2 0 0 2 2 2 0 Tachykinin family | Ref_seq=scaffold1208_contigs=2, transcript_loc=scaffold1208_contigs=2:49824-50114 Augustus predicted protein sequence Tomato scaffold1208_contigs=2~49824-50114 MraZ PF02381.13 g76004.t1 - 0.048 13.4 0 0.065 13 0 1.2 1 0 0 1 1 1 0 MraZ protein | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:42693-42953 Augustus predicted protein sequence Tomato scaffold2618_contigs=26~42693-42953 ATHILA PF03078.10 g28828.t1 - 0.000011 24.2 0 0.000086 21.2 0 1.9 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:472958-473776 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~472958-473776 Mt_ATP-synt_D PF05873.7 g55301.t1 - 0.021 14.4 0.2 0.03 13.9 0.1 1.4 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:709489-710000 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~709489-710000 Sds3 PF08598.6 g34517.t1 - 0.1 12.1 5 0.15 11.5 3.5 1.3 1 1 0 1 1 1 0 Sds3-like | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:84329-84706 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~84329-84706 Fis1_TPR_C PF14853.1 g71099.t1 - 0.12 12.2 0 0.23 11.3 0 1.4 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:360109-360589 Augustus predicted protein sequence Tomato scaffold2355_contigs=18~360109-360589 gag_pre-integrs PF13976.1 g7582.t1 - 0.000017 24.3 0.2 0.000038 23.2 0.1 1.5 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:265933-269067 Augustus predicted protein sequence Tomato scaffold404_contigs=9~265933-269067 eIF-3c_N PF05470.7 g41085.t1 - 0.0076 14.3 0.2 0.0084 14.2 0.1 1 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit 8 N-terminus | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:519242-519511 Augustus predicted protein sequence Tomato scaffold1320_contigs=26~519242-519511 DUF4319 PF14203.1 g77307.t1 - 0.12 11.8 0 0.2 11.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:17585-17944 Augustus predicted protein sequence Tomato scaffold2654_contigs=6~17585-17944 DUF4276 PF14103.1 g37121.t1 - 0.095 12.5 0 0.12 12.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:345663-348227 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~345663-348227 DDE_Tnp_Tn3 PF01526.12 g9140.t1 - 0.02 13.5 0.1 0.023 13.3 0 1 1 0 0 1 1 1 0 Tn3 transposase DDE domain | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:52379-54249 Augustus predicted protein sequence Tomato scaffold448_contigs=2~52379-54249 MAP65_ASE1 PF03999.7 g81359.t1 - 4.3 5.8 5.7 5.8 5.3 3.9 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:42940-43866 Augustus predicted protein sequence Tomato scaffold2727_contigs=1~42940-43866 DUF4347 PF14252.1 g4879.t1 - 0.045 13.2 0.1 0.42 10.1 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4347) | Ref_seq=scaffold310_contigs=6, transcript_loc=scaffold310_contigs=6:29127-32352 Augustus predicted protein sequence Tomato scaffold310_contigs=6~29127-32352 DBD_Tnp_Mut PF03108.10 g9672.t1 - 0.00000074 28.6 0 0.000001 28.2 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:21547-21915 Augustus predicted protein sequence Tomato scaffold469_contigs=1~21547-21915 P12 PF12669.2 g51686.t1 - 0.04 14.1 0.8 0.056 13.6 0.6 1.3 1 0 0 1 1 1 0 Virus attachment protein p12 family | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:164917-165129 Augustus predicted protein sequence Tomato scaffold1620_contigs=20~164917-165129 Tropomyosin_1 PF12718.2 g24305.t1 - 0.021 14.6 3.5 0.02 14.7 1.9 1.4 1 1 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:63531-63908 Augustus predicted protein sequence Tomato scaffold880_contigs=9~63531-63908 Carla_C4 PF01623.12 g685.t1 - 0.19 11.4 1.9 0.31 10.8 1.3 1.3 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:121091-121375 Augustus predicted protein sequence Tomato scaffold95_contigs=9~121091-121375 DUF1313 PF07011.6 g59292.t1 - 0.000044 23 7.1 0.032 13.9 0.7 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1313) | Ref_seq=scaffold1906_contigs=5, transcript_loc=scaffold1906_contigs=5:8610-9232 Augustus predicted protein sequence Tomato scaffold1906_contigs=5~8610-9232 DUF1631 PF07793.6 g64817.t1 - 0.0099 14 0 0.01 13.9 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1631) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:4652-9638 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~4652-9638 KNOX2 PF03791.8 g79891.t1 - 0.12 11.6 0.1 5.1 6.4 0 2.2 2 0 0 2 2 2 0 KNOX2 domain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:162425-162790 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~162425-162790 Spt4 PF06093.8 g14058.t1 - 0.079 12.8 0.1 0.26 11.1 0 1.8 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:333427-334284 Augustus predicted protein sequence Tomato scaffold583_contigs=2~333427-334284 S-antigen PF05756.6 g49889.t1 - 5.6 7 9 30 4.6 0 2.4 2 0 0 2 2 2 0 S-antigen protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:531355-531924 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~531355-531924 bcl-2I13 PF12201.3 g39202.t1 - 0.095 12.1 0 0.18 11.3 0 1.4 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:312928-314753 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~312928-314753 Herpes_LMP1 PF05297.6 g14329.t1 - 0.045 12.6 0.1 0.05 12.5 0 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:64118-64432 Augustus predicted protein sequence Tomato scaffold588_contigs=2~64118-64432 zf-AN1 PF01428.11 g15789.t1 - 1.1 9.1 3.4 19 5.2 2.3 2.3 1 1 0 1 1 1 0 AN1-like Zinc finger | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:32247-32543 Augustus predicted protein sequence Tomato scaffold644_contigs=2~32247-32543 Internalin_N PF12354.3 g12867.t1 - 0.12 12 0.4 0.22 11.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:159199-159549 Augustus predicted protein sequence Tomato scaffold561_contigs=10~159199-159549 CAF-1_p150 PF11600.3 g77269.t1 - 0.0017 17.7 21 0.0022 17.4 14.6 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:174071-175139 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~174071-175139 RFX5_DNA_bdg PF14621.1 g62679.t1 - 0.028 14 6.4 0.062 12.9 4.4 1.6 1 1 0 1 1 1 0 RFX5 DNA-binding domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:330368-330766 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~330368-330766 Cwf_Cwc_15 PF04889.7 g16086.t1 - 0.0091 15.7 1.3 0.0099 15.6 0.9 1.1 1 0 0 1 1 1 1 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:272297-272518 Augustus predicted protein sequence Tomato scaffold654_contigs=10~272297-272518 IN_DBD_C PF00552.16 g19737.t1 - 0.052 13 0.2 0.08 12.3 0.1 1.3 1 0 0 1 1 1 0 Integrase DNA binding domain | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:265998-266315 Augustus predicted protein sequence Tomato scaffold757_contigs=4~265998-266315 DUF3471 PF11954.3 g19654.t1 - 0.046 13.5 0 0.12 12.2 0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3471) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:7438-7860 Augustus predicted protein sequence Tomato scaffold757_contigs=4~7438-7860 Imm2 PF14426.1 g2439.t1 - 0.16 11.9 0.5 0.57 10.2 0 1.9 2 0 0 2 2 2 0 Immunity protein Imm2 | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:171756-171962 Augustus predicted protein sequence Tomato scaffold237_contigs=4~171756-171962 PriCT_2 PF08707.6 g39196.t1 - 0.0061 16.3 0.2 0.03 14.1 0.1 2 1 1 0 1 1 1 1 Primase C terminal 2 (PriCT-2) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:290136-290486 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~290136-290486 KIF1B PF12423.3 g13585.t1 - 0.18 11.8 1.4 1 9.4 0.1 2.1 2 0 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:52203-52454 Augustus predicted protein sequence Tomato scaffold578_contigs=5~52203-52454 zf-CCHC_3 PF13917.1 g72047.t1 - 0.0034 17 1.7 0.0048 16.5 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:25640-25963 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~25640-25963 CENP-O PF09496.5 g72259.t1 - 0.0045 17.1 0.5 0.0082 16.3 0.3 1.7 1 1 0 1 1 1 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:842950-843378 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~842950-843378 Tyr_Deacylase PF02580.11 g69083.t1 - 0.13 12.2 0.1 7.8 6.4 0 2.2 2 0 0 2 2 2 0 D-Tyr-tRNA(Tyr) deacylase | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:18901-19750 Augustus predicted protein sequence Tomato scaffold2253_contigs=17~18901-19750 Nup54 PF13874.1 g83103.t1 - 0.015 14.9 1.2 0.015 14.9 0.9 2.8 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:187558-188538 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~187558-188538 DUF4511 PF14974.1 g78362.t1 - 0.063 13 0.1 16 5.2 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4511) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:312983-314928 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~312983-314928 GAS PF13851.1 g64836.t1 - 0.16 11.1 13.6 0.082 12 4.9 2 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:100485-101048 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~100485-101048 Sporozoite_P67 PF05642.6 g28507.t1 - 0.00021 19.3 1.7 0.00027 18.9 1.2 1 1 0 0 1 1 1 1 Sporozoite P67 surface antigen | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:189123-189805 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~189123-189805 Peptidase_S46 PF10459.4 g83112.t1 - 0.038 12.4 2.7 0.043 12.2 1.9 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:196800-197660 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~196800-197660 B12D PF06522.6 g80317.t1 - 0.14 11.9 0 0.22 11.2 0 1.4 1 0 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:21901-22287 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~21901-22287 Pkinase PF00069.20 g14368.t1 - 0.059 12.5 0.1 0.085 11.9 0 1.6 1 1 0 1 1 1 0 Protein kinase domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:75125-75520 Augustus predicted protein sequence Tomato scaffold594_contigs=19~75125-75520 Fe_dep_repr_C PF02742.10 g78398.t1 - 0.14 11.8 0.2 3.7 7.2 0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:112726-113085 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~112726-113085 gag_pre-integrs PF13976.1 g49808.t1 - 0.017 14.7 1.1 0.038 13.6 0.3 1.9 1 1 1 2 2 2 0 GAG-pre-integrase domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:292994-295701 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~292994-295701 N_methyl_2 PF13544.1 g25610.t1 - 0.95 9 2.6 12 5.5 1.8 2.6 1 1 0 1 1 1 0 Type IV pilin N-term methylation site GFxxxE | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:392815-399464 Augustus predicted protein sequence Tomato scaffold929_contigs=9~392815-399464 DBD_Tnp_Mut PF03108.10 g74960.t1 - 0.0072 15.8 0 0.011 15.3 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:141819-142223 Augustus predicted protein sequence Tomato scaffold2580_contigs=9~141819-142223 zf-CCHC PF00098.18 g15681.t1 - 0.00043 20 0.3 0.00068 19.4 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:46917-47291 Augustus predicted protein sequence Tomato scaffold640_contigs=3~46917-47291 DUF1985 PF09331.6 g23538.t1 - 0.000028 23.9 0 0.000028 23.9 0 2 1 1 1 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:44764-49361 Augustus predicted protein sequence Tomato scaffold863_contigs=2~44764-49361 ATHILA PF03078.10 g68928.t1 - 0.000000016 33.6 0.3 0.000006 25.1 0.2 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:113998-115019 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~113998-115019 VLPT PF07122.6 g43488.t1 - 0.071 12.7 0.5 18 5.1 0.1 3 2 1 0 2 2 2 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:30480-30861 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~30480-30861 Sensor_TM1 PF13755.1 g14695.t1 - 0.056 12.9 0 0.076 12.5 0 1.2 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:190865-191125 Augustus predicted protein sequence Tomato scaffold599_contigs=8~190865-191125 DUF3893 PF13032.1 g14999.t1 - 0.0085 16.2 0 0.0094 16 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3893) | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:24275-24643 Augustus predicted protein sequence Tomato scaffold616_contigs=8~24275-24643 DUF2015 PF09435.5 g10728.t1 - 0.11 12.2 0.1 0.16 11.7 0 1.2 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:384588-385241 Augustus predicted protein sequence Tomato scaffold503_contigs=7~384588-385241 DEC-1_N PF04625.8 g44947.t1 - 0.074 11.7 2.2 0.078 11.6 1.5 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:300812-301806 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~300812-301806 zf-RVT PF13966.1 g71050.t1 - 1E-011 45 2.9 2E-011 44 0.3 2.1 1 1 1 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:39278-40274 Augustus predicted protein sequence Tomato scaffold2355_contigs=18~39278-40274 DUF1338 PF07063.8 g49168.t1 - 0.051 12.6 0.5 0.056 12.4 0.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:75361-75609 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~75361-75609 Herpes_LMP1 PF05297.6 g23851.t1 - 0.99 8.2 5.6 0.23 10.3 1.8 1.4 1 1 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:32074-35145 Augustus predicted protein sequence Tomato scaffold871_contigs=9~32074-35145 DUF243 PF03103.12 g16685.t1 - 0.12 12.4 0 0.94 9.6 0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF243) | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:68732-69040 Augustus predicted protein sequence Tomato scaffold676_contigs=2~68732-69040 Hemopexin PF00045.14 g35624.t1 - 0.2 11.4 1.7 0.34 10.6 1.2 1.4 1 0 0 1 1 1 0 Hemopexin | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1000783-1002410 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~1000783-1002410 DUF3219 PF11514.3 g86146.t1 - 0.0095 15.8 0.4 4.6 7.1 0 3.1 1 1 2 3 3 3 3 Protein of unknown function (DUF3219) | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:26115-28605 Augustus predicted protein sequence Tomato scaffold2839_contigs=1~26115-28605 AnfG_VnfG PF03139.10 g23957.t1 - 0.065 13 0 0.18 11.6 0 1.6 2 0 0 2 2 2 0 Vanadium/alternative nitrogenase delta subunit | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:257613-259350 Augustus predicted protein sequence Tomato scaffold874_contigs=5~257613-259350 DUF2457 PF10446.4 g58836.t1 - 1.3 7.6 18.7 1.8 7.2 13 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:14407-15440 Augustus predicted protein sequence Tomato scaffold1877_contigs=4~14407-15440 DUF318 PF03773.8 g46209.t1 - 0.008 15.1 0 0.02 13.8 0 1.5 2 0 0 2 2 2 1 Predicted permease | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:531996-534646 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~531996-534646 PMD PF10536.4 g41513.t1 - 0.048 12.6 0 0.053 12.5 0 1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:327282-327608 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~327282-327608 Med12 PF09497.5 g22207.t1 - 0.12 12.3 0.3 0.61 10.1 0.2 2.1 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:35911-36240 Augustus predicted protein sequence Tomato scaffold825_contigs=10~35911-36240 SAPS PF04499.10 g6813.t1 - 0.024 13.2 0.8 0.031 12.9 0.6 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:63098-64337 Augustus predicted protein sequence Tomato scaffold383_contigs=3~63098-64337 CENP-R PF06729.7 g32026.t1 - 0.0026 17.4 4.1 0.0032 17.1 2.8 1.2 1 0 0 1 1 1 1 Kinetochore component, CENP-R | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:156268-156600 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~156268-156600 PWWP PF00855.12 g44694.t1 - 0.023 14.8 0.1 0.027 14.6 0.1 1.1 1 0 0 1 1 1 0 PWWP domain | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:44505-44858 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~44505-44858 DUF2127 PF09900.4 g51074.t1 - 0.09 12.8 0.1 0.12 12.4 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:226662-227048 Augustus predicted protein sequence Tomato scaffold1605_contigs=5~226662-227048 RVT_3 PF13456.1 g68822.t1 - 0.019 14.7 0 0.024 14.4 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:55819-56193 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~55819-56193 Toxin_39 PF15500.1 g28468.t1 - 0.14 12.3 0.2 0.19 11.8 0.1 1.4 1 1 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:169570-169975 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~169570-169975 eIF3g PF12353.3 g60780.t1 - 0.00073 19.4 0.2 0.00073 19.4 0.1 2 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:300829-304424 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~300829-304424 MHCassoc_trimer PF08831.5 g28584.t1 - 0.13 12 0.9 0.27 11.1 0.4 1.7 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:70101-70814 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~70101-70814 S-antigen PF05756.6 g42969.t1 - 0.084 12.8 0.8 0.12 12.3 0.5 1.2 1 0 0 1 1 1 0 S-antigen protein | Ref_seq=scaffold1378_contigs=1, transcript_loc=scaffold1378_contigs=1:13365-15821 Augustus predicted protein sequence Tomato scaffold1378_contigs=1~13365-15821 UBN2 PF14223.1 g5621.t1 - 0.0071 16.1 0 0.013 15.2 0 1.5 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:167334-167777 Augustus predicted protein sequence Tomato scaffold334_contigs=13~167334-167777 TilS PF09179.6 g37135.t1 - 0.0027 17.6 0.2 0.0042 17 0.1 1.3 1 0 0 1 1 1 1 TilS substrate binding domain | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:420586-420999 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~420586-420999 RecX PF02631.11 g87561.t1 - 0.039 14.1 0.9 18 5.5 0 2.9 3 0 0 3 3 3 0 RecX family | Ref_seq=scaffold3317_contigs=1, transcript_loc=scaffold3317_contigs=1:321-833 Augustus predicted protein sequence Tomato scaffold3317_contigs=1~321-833 DUF572 PF04502.8 g56305.t1 - 0.6 9.2 4.8 0.8 8.8 3.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:31524-32135 Augustus predicted protein sequence Tomato scaffold1801_contigs=9~31524-32135 Zip PF02535.17 g62477.t1 - 0.19 10.7 0.6 0.23 10.4 0.4 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:248944-249997 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~248944-249997 MgtE_N PF03448.12 g83584.t1 - 0.042 14.1 0.2 0.06 13.6 0.1 1.1 1 0 0 1 1 1 0 MgtE intracellular N domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1026810-1027312 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1026810-1027312 Snapin_Pallidin PF14712.1 g65896.t1 - 0.032 14.5 2.4 0.048 13.9 1.7 1.2 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:56863-57168 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~56863-57168 Herpes_UL73 PF03554.8 g37583.t1 - 0.028 14.2 0.6 0.041 13.7 0.4 1.3 1 0 0 1 1 1 0 UL73 viral envelope glycoprotein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:253867-254202 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~253867-254202 MHCassoc_trimer PF08831.5 g46383.t1 - 0.08 12.7 0.8 0.2 11.5 0.6 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1482_contigs=3, transcript_loc=scaffold1482_contigs=3:33727-34775 Augustus predicted protein sequence Tomato scaffold1482_contigs=3~33727-34775 Vac_Fusion PF02346.11 g29770.t1 - 0.13 11.7 0 0.35 10.3 0 1.7 2 0 0 2 2 2 0 Chordopoxvirus fusion protein | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:41454-42175 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~41454-42175 UBN2 PF14223.1 g46428.t1 - 0.000042 23.3 0 0.00011 21.9 0 1.6 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:82077-86880 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~82077-86880 PsbP PF01789.11 g9536.t1 - 0.023 14.1 0 0.051 13 0 1.5 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:51838-52728 Augustus predicted protein sequence Tomato scaffold461_contigs=4~51838-52728 CENP-R PF06729.7 g27005.t1 - 0.059 13 2.6 0.078 12.6 1.6 1.4 1 1 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:173961-174371 Augustus predicted protein sequence Tomato scaffold965_contigs=10~173961-174371 CCDC50_N PF15295.1 g18833.t1 - 0.067 13.1 0.6 0.078 12.8 0.4 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:670236-670544 Augustus predicted protein sequence Tomato scaffold731_contigs=13~670236-670544 7tm_6 PF02949.15 g82328.t1 - 0.073 11.9 0.1 0.086 11.6 0 1.1 1 0 0 1 1 1 0 7tm Odorant receptor | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:184032-184597 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~184032-184597 NDUFA12 PF05071.11 g45655.t1 - 0.057 13.8 0 0.094 13.1 0 1.3 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase subunit NDUFA12 | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:255006-255368 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~255006-255368 Cation_ATPase_C PF00689.16 g1778.t1 - 0.093 12.2 0.1 0.12 11.8 0.1 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:1-1929 Augustus predicted protein sequence Tomato scaffold217_contigs=3~1-1929 EBV-NA3 PF05009.7 g29305.t1 - 0.2 10.9 2.2 0.21 10.8 1.5 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:301469-301696 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~301469-301696 Pox_T4_N PF04491.7 g3260.t1 - 0.064 13.1 0.8 0.15 11.9 0 2 3 0 0 3 3 3 0 Poxvirus T4 protein, N terminus | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:85479-87552 Augustus predicted protein sequence Tomato scaffold265_contigs=4~85479-87552 DUF3585 PF12130.3 g27241.t1 - 0.071 12.9 0.9 0.097 12.5 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3585) | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:114281-116089 Augustus predicted protein sequence Tomato scaffold974_contigs=15~114281-116089 YscW PF09619.5 g551.t1 - 0.084 12.5 0 0.14 11.9 0 1.4 1 0 0 1 1 1 0 Type III secretion system lipoprotein chaperone (YscW) | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:25015-26866 Augustus predicted protein sequence Tomato scaffold53_contigs=4~25015-26866 FoP_duplication PF13865.1 g5195.t1 - 0.81 10.1 6.8 1.6 9.2 4.7 1.4 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:20737-21234 Augustus predicted protein sequence Tomato scaffold319_contigs=6~20737-21234 DUF3035 PF11233.3 g20625.t1 - 0.056 13.4 0.3 0.085 12.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:53973-55019 Augustus predicted protein sequence Tomato scaffold777_contigs=4~53973-55019 IFT43 PF15305.1 g78749.t1 - 0.92 9.5 7.3 0.26 11.2 1.5 1.9 1 1 1 2 2 2 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2677_contigs=10, transcript_loc=scaffold2677_contigs=10:5408-5821 Augustus predicted protein sequence Tomato scaffold2677_contigs=10~5408-5821 LRRNT PF01462.13 g2110.t1 - 0.06 12.8 0.3 0.13 11.7 0.2 1.6 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:56929-57369 Augustus predicted protein sequence Tomato scaffold227_contigs=2~56929-57369 RraB PF06877.6 g51816.t1 - 0.13 12.9 0.1 0.17 12.5 0.1 1.1 1 0 0 1 1 1 0 Regulator of ribonuclease activity B | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:45257-46094 Augustus predicted protein sequence Tomato scaffold1624_contigs=2~45257-46094 DUF2284 PF10050.4 g18430.t1 - 0.083 12.4 0.1 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:18082-18588 Augustus predicted protein sequence Tomato scaffold724_contigs=4~18082-18588 Osmo_CC PF08946.5 g30538.t1 - 0.042 13.8 0.3 0.062 13.3 0.2 1.3 1 0 0 1 1 1 0 Osmosensory transporter coiled coil | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:46220-46560 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~46220-46560 CBM_2 PF00553.14 g52517.t1 - 0.012 15.5 0.3 0.018 15 0.2 1.2 1 0 0 1 1 1 0 Cellulose binding domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:288249-289046 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~288249-289046 NUDE_C PF04880.8 g49933.t1 - 0.02 15.2 0.7 0.025 14.9 0.5 1.1 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:659381-660531 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~659381-660531 Fzo_mitofusin PF04799.8 g81476.t1 - 0.057 12.8 3.6 0.096 12 2.5 1.5 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:308171-308887 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~308171-308887 zf-TRM13_CCCH PF11722.3 g59438.t1 - 0.001 18.3 0 0.0033 16.7 0 1.8 2 0 0 2 2 2 1 CCCH zinc finger in TRM13 protein | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:4338-7564 Augustus predicted protein sequence Tomato scaffold1923_contigs=35~4338-7564 DUF4471 PF14740.1 g17227.t1 - 0.087 12 0.6 0.085 12 0.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:46272-46577 Augustus predicted protein sequence Tomato scaffold701_contigs=5~46272-46577 FH2 PF02181.18 g46348.t1 - 0.0071 15.2 0.1 0.0096 14.8 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:103176-106416 Augustus predicted protein sequence Tomato scaffold1480_contigs=4~103176-106416 Pox_A_type_inc PF04508.7 g44756.t1 - 0.021 14.5 0.1 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:273547-274216 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~273547-274216 Cauli_AT PF03233.8 g6821.t1 - 0.12 12.1 1.8 0.32 10.6 0.6 1.9 2 0 0 2 2 2 0 Aphid transmission protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:91121-93046 Augustus predicted protein sequence Tomato scaffold383_contigs=3~91121-93046 Defensin_beta PF00711.14 g69108.t1 - 0.9 9.5 8.9 1.1 9.2 0.8 2.6 2 0 0 2 2 2 0 Beta defensin | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:1837-8393 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~1837-8393 GET2 PF08690.5 g70426.t1 - 0.0037 16.5 0.1 0.0048 16.1 0.1 1.1 1 0 0 1 1 1 1 GET complex subunit GET2 | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:246031-246510 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~246031-246510 PDDEXK_5 PF11645.3 g3085.t1 - 0.58 9.8 7.1 1.7 8.2 0.6 2.3 2 0 0 2 2 2 0 PD-(D/E)XK endonuclease | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:27660-31150 Augustus predicted protein sequence Tomato scaffold259_contigs=7~27660-31150 COPI_C PF06957.6 g52192.t1 - 2.5 6.5 5.6 2.6 6.4 3.9 1 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus | Ref_seq=scaffold1632_contigs=6, transcript_loc=scaffold1632_contigs=6:43946-44301 Augustus predicted protein sequence Tomato scaffold1632_contigs=6~43946-44301 PET122 PF05476.6 g15987.t1 - 0.17 11.1 0 0.22 10.7 0 1.1 1 0 0 1 1 1 0 PET122 | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:490937-491212 Augustus predicted protein sequence Tomato scaffold651_contigs=13~490937-491212 DGF-1_4 PF11024.3 g41359.t1 - 0.13 12.7 5.1 1.3 9.4 0.4 2.4 1 1 1 2 2 2 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:100280-100489 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~100280-100489 BatD PF13584.1 g49898.t1 - 0.038 12.6 0.1 0.041 12.4 0.1 1.1 1 0 0 1 1 1 0 Oxygen tolerance | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:559055-559438 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~559055-559438 CDC37_N PF03234.9 g5570.t1 - 0.044 14.1 1.2 0.064 13.5 0.9 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:33348-35399 Augustus predicted protein sequence Tomato scaffold332_contigs=3~33348-35399 Rep_N PF08724.5 g19124.t1 - 0.079 12.4 0.1 0.19 11.2 0.1 1.8 1 1 0 1 1 1 0 Rep protein catalytic domain like | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:264539-265135 Augustus predicted protein sequence Tomato scaffold744_contigs=4~264539-265135 CDC45 PF02724.9 g1741.t1 - 0.12 10.4 3.1 0.11 10.4 2.2 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold214_contigs=4, transcript_loc=scaffold214_contigs=4:13695-14662 Augustus predicted protein sequence Tomato scaffold214_contigs=4~13695-14662 Gag_p6 PF08705.6 g58970.t1 - 0.0088 16 0.9 0.02 14.9 0.6 1.6 1 0 0 1 1 1 1 Gag protein p6 | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:35997-37459 Augustus predicted protein sequence Tomato scaffold1886_contigs=2~35997-37459 DUF3534 PF12053.3 g17837.t1 - 0.94 9.3 4.2 1.2 8.9 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3534) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:101940-102506 Augustus predicted protein sequence Tomato scaffold715_contigs=2~101940-102506 Sof1 PF04158.9 g27328.t1 - 0.0051 16.8 0 0.0083 16.1 0 1.2 1 0 0 1 1 1 1 Sof1-like domain | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:220938-221989 Augustus predicted protein sequence Tomato scaffold975_contigs=17~220938-221989 DUF3827 PF12877.2 g22218.t1 - 0.073 11.1 0.3 0.092 10.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3827) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:56289-57107 Augustus predicted protein sequence Tomato scaffold825_contigs=10~56289-57107 GAGA_bind PF06217.7 g71818.t1 - 0.091 12.7 3.5 0.11 12.4 2.4 1.1 1 0 0 1 1 1 0 GAGA binding protein-like family | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:83901-87817 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~83901-87817 DUF3678 PF12435.3 g12371.t1 - 0.18 11.4 2.9 0.5 9.9 2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3678) | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:7890-9296 Augustus predicted protein sequence Tomato scaffold549_contigs=4~7890-9296 RVT_2 PF07727.9 g75589.t1 - 0.0064 15.4 0.1 0.0091 14.9 0.1 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:160643-167262 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~160643-167262 DUF1199 PF06712.6 g1787.t1 - 0.062 13.1 0.2 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:30654-30944 Augustus predicted protein sequence Tomato scaffold217_contigs=3~30654-30944 Gyro_capsid PF04162.7 g84489.t1 - 3.6 5.7 6.1 3.8 5.6 4.2 1 1 0 0 1 1 1 0 Gyrovirus capsid protein (VP1) | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:306-1918 Augustus predicted protein sequence Tomato scaffold2772_contigs=1~306-1918 HR1 PF02185.11 g2935.t1 - 0.89 9.3 6.2 4 7.2 3.7 2.5 2 1 0 2 2 2 0 Hr1 repeat | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:149284-150932 Augustus predicted protein sequence Tomato scaffold257_contigs=2~149284-150932 UPF0240 PF06784.6 g72550.t1 - 0.06 13 0.8 0.096 12.3 0.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:149454-150683 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~149454-150683 GRA6 PF05084.8 g75381.t1 - 0.24 10.8 2.8 0.26 10.7 1.9 1.1 1 0 0 1 1 1 0 Granule antigen protein (GRA6) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:194628-194897 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~194628-194897 DUF837 PF05769.6 g84923.t1 - 0.099 12.1 0.1 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF837) | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:111160-111462 Augustus predicted protein sequence Tomato scaffold2784_contigs=1~111160-111462 DUF1880 PF08976.6 g6679.t1 - 0.44 10.6 3 0.64 10.1 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:255780-256196 Augustus predicted protein sequence Tomato scaffold380_contigs=11~255780-256196 DUF2754 PF10953.3 g5483.t1 - 0.0067 16.4 1.6 0.027 14.5 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2754) | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:43642-52521 Augustus predicted protein sequence Tomato scaffold329_contigs=2~43642-52521 Shadoo PF14999.1 g61738.t1 - 0.16 11.8 8.1 0.21 11.4 5.6 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective | Ref_seq=scaffold1974_contigs=1, transcript_loc=scaffold1974_contigs=1:5854-6263 Augustus predicted protein sequence Tomato scaffold1974_contigs=1~5854-6263 Nucleoplasmin PF03066.10 g27254.t1 - 0.033 13.6 1.5 0.033 13.6 1 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:148445-151174 Augustus predicted protein sequence Tomato scaffold974_contigs=15~148445-151174 Phage-scaffold PF09306.5 g78511.t1 - 0.1 11.7 0.1 0.13 11.4 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage, scaffolding protein | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:194930-195268 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~194930-195268 YaaC PF14175.1 g5760.t1 - 0.095 11.6 0.3 0.14 11.1 0.1 1.4 1 1 1 2 2 2 0 YaaC-like Protein | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:89185-89532 Augustus predicted protein sequence Tomato scaffold338_contigs=10~89185-89532 Tropomyosin PF00261.15 g5705.t1 - 0.0017 17.4 1.3 0.0023 17 0.9 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:89598-90883 Augustus predicted protein sequence Tomato scaffold337_contigs=4~89598-90883 Fer4_17 PF13534.1 g46719.t1 - 0.033 14.5 1.4 0.051 13.9 1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:48224-48529 Augustus predicted protein sequence Tomato scaffold1486_contigs=6~48224-48529 Mgm101p PF06420.7 g42004.t1 - 0.0098 15.2 0 0.018 14.3 0 1.3 1 0 0 1 1 1 1 Mitochondrial genome maintenance MGM101 | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:156868-159016 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~156868-159016 eIF3g PF12353.3 g62238.t1 - 0.063 13.1 0.5 3 7.7 0 2.4 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:247202-251093 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~247202-251093 DUF4510 PF14971.1 g34887.t1 - 0.016 15.3 0.5 0.024 14.8 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4510) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:72409-73123 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~72409-73123 SPATIAL PF15256.1 g521.t1 - 0.073 13.1 0 0.084 12.9 0 1.2 1 0 0 1 1 1 0 SPATIAL | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:89313-89852 Augustus predicted protein sequence Tomato scaffold51_contigs=2~89313-89852 MAP65_ASE1 PF03999.7 g30368.t1 - 0.052 12.1 3.9 0.058 11.9 2.7 1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:219568-220224 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~219568-220224 Retrotrans_gag PF03732.12 g17742.t1 - 0.00064 19.7 0.4 0.00099 19.1 0.3 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:78093-78930 Augustus predicted protein sequence Tomato scaffold714_contigs=9~78093-78930 YWFCY PF14293.1 g84570.t1 - 0.0033 17.2 0 1.8 8.4 0 2.2 2 0 0 2 2 2 2 YWFCY protein | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:91758-92132 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~91758-92132 RFX1_trans_act PF04589.8 g63318.t1 - 0.75 9.5 2.8 17 5.1 0.1 2.4 2 1 0 2 2 2 0 RFX1 transcription activation region | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:249201-249941 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~249201-249941 PsbP PF01789.11 g45027.t1 - 0.047 13.1 0 0.077 12.4 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:572841-573662 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~572841-573662 DUF342 PF03961.8 g9168.t1 - 0.029 12.8 2.3 0.031 12.6 1.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:169188-169472 Augustus predicted protein sequence Tomato scaffold448_contigs=2~169188-169472 ATHILA PF03078.10 g78068.t1 - 0.00000012 30.7 0 0.0000039 25.7 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:89812-90198 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~89812-90198 RVT_3 PF13456.1 g42441.t1 - 0.0026 17.5 0 0.0035 17 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:447560-447853 Augustus predicted protein sequence Tomato scaffold1357_contigs=25~447560-447853 Med13_N PF11597.3 g80979.t1 - 0.071 11.7 0 0.087 11.4 0 1.2 1 0 0 1 1 1 0 Mediator complex subunit 13 N-terminal | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:90744-91274 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~90744-91274 Borealin PF10512.4 g37753.t1 - 0.045 13.6 0.1 0.075 12.9 0.1 1.4 1 0 0 1 1 1 0 Cell division cycle-associated protein 8 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:199996-200538 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~199996-200538 DUF4463 PF14703.1 g87204.t1 - 0.0013 19.2 0.1 2.1 8.9 0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4463) | Ref_seq=scaffold2957_contigs=1, transcript_loc=scaffold2957_contigs=1:1-1527 Augustus predicted protein sequence Tomato scaffold2957_contigs=1~1-1527 NAM-associated PF14303.1 g72659.t1 - 0.0032 17.8 0.3 0.004 17.4 0.2 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:157258-161313 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~157258-161313 NQR2_RnfD_RnfE PF03116.10 g43325.t1 - 0.032 13.4 0.1 0.032 13.4 0 1.2 1 0 0 1 1 1 0 NQR2, RnfD, RnfE family | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:49589-49840 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~49589-49840 DUF4286 PF14114.1 g34691.t1 - 0.04 14.1 0.2 0.15 12.3 0.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:9019-9456 Augustus predicted protein sequence Tomato scaffold1155_contigs=5~9019-9456 zf-LITAF-like PF10601.4 g57145.t1 - 0.068 13 1.6 0.1 12.4 0.4 1.8 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:646681-647226 Augustus predicted protein sequence Tomato scaffold1827_contigs=21~646681-647226 DBD_Tnp_Mut PF03108.10 g23054.t1 - 0.000000013 34.3 0 0.000000016 33.9 0 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:212884-213952 Augustus predicted protein sequence Tomato scaffold846_contigs=10~212884-213952 FH2 PF02181.18 g52594.t1 - 0.044 12.6 0 0.047 12.5 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1640_contigs=5, transcript_loc=scaffold1640_contigs=5:150242-150658 Augustus predicted protein sequence Tomato scaffold1640_contigs=5~150242-150658 Treslin_N PF15292.1 g45084.t1 - 0.0077 14.1 0 0.0085 14 0 1.1 1 0 0 1 1 1 1 Treslin N-terminus | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:76705-77282 Augustus predicted protein sequence Tomato scaffold1443_contigs=30~76705-77282 UBN2_2 PF14227.1 g19719.t1 - 0.0089 15.5 0.6 0.022 14.3 0.1 1.7 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:220181-220546 Augustus predicted protein sequence Tomato scaffold757_contigs=4~220181-220546 DUF4070 PF13282.1 g83630.t1 - 0.074 12.5 0.1 0.085 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4070) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1229337-1229621 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1229337-1229621 Dec-1 PF04624.9 g30872.t1 - 0.059 13 0.7 0.059 13 0.5 2.3 2 0 0 2 2 2 0 Dec-1 repeat | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:104700-106342 Augustus predicted protein sequence Tomato scaffold1048_contigs=2~104700-106342 DENN PF02141.16 g14354.t1 - 0.071 12.8 0 0.13 11.9 0 1.4 1 0 0 1 1 1 0 DENN (AEX-3) domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:5930-8586 Augustus predicted protein sequence Tomato scaffold594_contigs=19~5930-8586 EAP30 PF04157.11 g45582.t1 - 0.098 11.7 0.3 0.13 11.4 0.2 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family | Ref_seq=scaffold1453_contigs=3, transcript_loc=scaffold1453_contigs=3:32523-33077 Augustus predicted protein sequence Tomato scaffold1453_contigs=3~32523-33077 AXH PF08517.7 g16378.t1 - 0.031 14.4 0.1 0.059 13.5 0.1 1.5 1 1 0 1 1 1 0 Ataxin-1 and HBP1 module (AXH) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:64619-64909 Augustus predicted protein sequence Tomato scaffold669_contigs=3~64619-64909 HAUS-augmin3 PF14932.1 g11423.t1 - 0.001 18.2 11.6 0.0014 17.8 8.1 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:36611-38270 Augustus predicted protein sequence Tomato scaffold524_contigs=3~36611-38270 End_tail_spike PF12219.3 g18719.t1 - 0.08 12.7 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 Catalytic domain of bacteriophage endosialidase | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:278425-280100 Augustus predicted protein sequence Tomato scaffold731_contigs=13~278425-280100 RES PF08808.6 g18859.t1 - 0.12 12.4 0.2 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 RES domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:736948-737484 Augustus predicted protein sequence Tomato scaffold731_contigs=13~736948-737484 PsbP PF01789.11 g6967.t1 - 0.024 14 0 0.12 11.7 0 1.9 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:10959-11852 Augustus predicted protein sequence Tomato scaffold386_contigs=10~10959-11852 EBV-NA3 PF05009.7 g40721.t1 - 0.32 10.2 1.8 0.34 10.1 1.2 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:205988-206215 Augustus predicted protein sequence Tomato scaffold1308_contigs=16~205988-206215 CAF-1_p150 PF11600.3 g16866.t1 - 0.019 14.3 32.2 0.023 14.1 22.4 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:113918-114289 Augustus predicted protein sequence Tomato scaffold685_contigs=4~113918-114289 Peptidase_C48 PF02902.14 g62863.t1 - 0.083 12.4 0 0.089 12.4 0 1.2 1 0 0 1 1 1 0 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:18676-19014 Augustus predicted protein sequence Tomato scaffold2012_contigs=13~18676-19014 zf-B_box PF00643.19 g49981.t1 - 0.073 12.9 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 B-box zinc finger | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:62222-62835 Augustus predicted protein sequence Tomato scaffold1551_contigs=3~62222-62835 NAM-associated PF14303.1 g75000.t1 - 0.00000029 30.9 6.4 0.0026 18 0.5 2.1 1 1 1 2 2 2 2 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:156191-157008 Augustus predicted protein sequence Tomato scaffold2581_contigs=30~156191-157008 MHCassoc_trimer PF08831.5 g63355.t1 - 0.049 13.4 0.6 0.088 12.6 0.4 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:402906-403355 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~402906-403355 DUF4172 PF13776.1 g81294.t1 - 0.079 13 0.1 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:257212-257460 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~257212-257460 BTB_2 PF02214.17 g29848.t1 - 0.13 12.5 0.3 0.64 10.2 0 2.3 3 0 0 3 3 3 0 BTB/POZ domain | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:62384-63509 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~62384-63509 GP41 PF00517.12 g27334.t1 - 0.42 10.1 3 0.51 9.8 1.8 1.3 1 1 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:253575-254099 Augustus predicted protein sequence Tomato scaffold975_contigs=17~253575-254099 DUF972 PF06156.8 g56385.t1 - 0.024 14.9 12.7 0.024 14.9 8.8 2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:141799-142215 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~141799-142215 DUF2522 PF10747.4 g37733.t1 - 0.072 13.1 0.1 0.13 12.3 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2522) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:119716-121234 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~119716-121234 BRF1 PF07741.8 g12570.t1 - 1.1 9.5 7.4 1.2 9.3 5.1 1.1 1 0 0 1 1 1 0 Brf1-like TBP-binding domain | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:286020-286484 Augustus predicted protein sequence Tomato scaffold556_contigs=11~286020-286484 DUF3643 PF12356.3 g85547.t1 - 0.065 12.5 0 0.095 12 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3643) | Ref_seq=scaffold2808_contigs=1, transcript_loc=scaffold2808_contigs=1:72208-76928 Augustus predicted protein sequence Tomato scaffold2808_contigs=1~72208-76928 HTH_25 PF13413.1 g24181.t1 - 0.0099 15.4 0.2 0.017 14.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:525463-525801 Augustus predicted protein sequence Tomato scaffold876_contigs=13~525463-525801 VARLMGL PF14383.1 g63360.t1 - 0.12 11.5 0.1 0.26 10.4 0.1 1.5 1 0 0 1 1 1 0 DUF761-associated sequence motif | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:414994-415314 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~414994-415314 zf-CCHC_5 PF14787.1 g23275.t1 - 0.015 14.7 1 0.023 14.1 0.7 1.3 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:12064-12550 Augustus predicted protein sequence Tomato scaffold855_contigs=1~12064-12550 ATP-synt_D PF01813.12 g24045.t1 - 0.029 13.9 0 0.034 13.6 0 1.1 1 0 0 1 1 1 0 ATP synthase subunit D | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:212713-213867 Augustus predicted protein sequence Tomato scaffold875_contigs=10~212713-213867 DUF4472 PF14739.1 g17441.t1 - 0.00079 19.8 3.8 0.24 11.8 0.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4472) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:30551-30960 Augustus predicted protein sequence Tomato scaffold707_contigs=5~30551-30960 DUF3836 PF12930.2 g75016.t1 - 0.013 14.9 0.8 0.015 14.8 0.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF3836) | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:40171-40422 Augustus predicted protein sequence Tomato scaffold2582_contigs=20~40171-40422 Ribosomal_L15e PF00827.12 g18504.t1 - 0.013 15 2 0.026 14 1.4 1.5 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:141150-146243 Augustus predicted protein sequence Tomato scaffold725_contigs=8~141150-146243 DUF465 PF04325.8 g51959.t1 - 0.035 13.7 0.1 0.059 13 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF465) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:116819-118041 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~116819-118041 Fb_signal PF08341.6 g76769.t1 - 0.022 14.7 0.1 0.04 13.9 0 1.4 1 0 0 1 1 1 0 Fibronectin-binding protein signal sequence | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:625433-625849 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~625433-625849 Trypan_PARP PF05887.6 g21662.t1 - 6.6 6.5 28.8 0.73 9.6 16.8 1.7 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:61431-64291 Augustus predicted protein sequence Tomato scaffold810_contigs=11~61431-64291 DUF4559 PF15112.1 g16656.t1 - 0.00053 19.2 1.3 0.0006 19 0.9 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:106485-107061 Augustus predicted protein sequence Tomato scaffold675_contigs=2~106485-107061 DUF2185 PF09951.4 g53676.t1 - 0.14 11.9 0.1 0.24 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2185) | Ref_seq=scaffold1700_contigs=3, transcript_loc=scaffold1700_contigs=3:14717-15250 Augustus predicted protein sequence Tomato scaffold1700_contigs=3~14717-15250 Nucleos_tra2_N PF01773.15 g15538.t1 - 0.12 12.6 0 0.21 11.9 0 1.4 1 0 0 1 1 1 0 Na+ dependent nucleoside transporter N-terminus | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:137860-138162 Augustus predicted protein sequence Tomato scaffold631_contigs=3~137860-138162 zf-CCHC PF00098.18 g18842.t1 - 0.000077 22.4 5.2 0.00012 21.8 3.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:692602-692892 Augustus predicted protein sequence Tomato scaffold731_contigs=13~692602-692892 zf-CGNR PF11706.3 g30289.t1 - 0.45 10 3.2 10 5.7 0.1 2.3 1 1 1 2 2 2 0 CGNR zinc finger | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:138601-138882 Augustus predicted protein sequence Tomato scaffold1041_contigs=2~138601-138882 COP23 PF14218.1 g58504.t1 - 0.00023 20.7 0.5 0.00048 19.6 0.2 1.5 1 1 1 2 2 2 1 Circadian oscillating protein COP23 | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:223067-224684 Augustus predicted protein sequence Tomato scaffold1863_contigs=15~223067-224684 DUF745 PF05335.8 g1329.t1 - 0.0054 16.2 4.2 0.0097 15.4 2.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF745) | Ref_seq=scaffold198_contigs=2, transcript_loc=scaffold198_contigs=2:9576-10034 Augustus predicted protein sequence Tomato scaffold198_contigs=2~9576-10034 DUF4172 PF13776.1 g32078.t1 - 0.024 14.7 0.9 0.047 13.7 0.1 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:284614-285102 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~284614-285102 TAP42 PF04177.7 g69292.t1 - 0.11 11.4 0 0.16 10.9 0 1.2 1 0 0 1 1 1 0 TAP42-like family | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:107740-109197 Augustus predicted protein sequence Tomato scaffold2268_contigs=6~107740-109197 Rod_cone_degen PF15201.1 g16181.t1 - 0.0048 16.7 1.2 1.8 8.4 0.1 2.6 2 0 0 2 2 2 2 Progressive rod-cone degeneration | Ref_seq=scaffold657_contigs=4, transcript_loc=scaffold657_contigs=4:35957-37517 Augustus predicted protein sequence Tomato scaffold657_contigs=4~35957-37517 Fzo_mitofusin PF04799.8 g49202.t1 - 0.016 14.5 0.2 0.02 14.2 0.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:178868-179197 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~178868-179197 MHCassoc_trimer PF08831.5 g77971.t1 - 0.017 14.9 4.4 0.031 14.1 1.1 2.3 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:99627-100931 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~99627-100931 DUF4653 PF15546.1 g19196.t1 - 0.0095 15.2 0 0.011 15 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4653) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:22254-22733 Augustus predicted protein sequence Tomato scaffold748_contigs=11~22254-22733 Rb_C PF08934.5 g58531.t1 - 0.064 12.8 0 0.068 12.8 0 1.1 1 0 0 1 1 1 0 Rb C-terminal domain | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:65832-66104 Augustus predicted protein sequence Tomato scaffold1864_contigs=28~65832-66104 DUF3150 PF11348.3 g74843.t1 - 0.024 13.7 0 0.025 13.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:54706-55002 Augustus predicted protein sequence Tomato scaffold2571_contigs=16~54706-55002 GcrA PF07750.6 g55457.t1 - 0.0042 17.3 1.2 0.014 15.6 0.2 1.8 1 1 1 2 2 2 1 GcrA cell cycle regulator | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:275870-276717 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~275870-276717 Tropomyosin PF00261.15 g7517.t1 - 0.04 12.9 0.3 0.04 12.9 0.2 1.5 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:90092-93372 Augustus predicted protein sequence Tomato scaffold403_contigs=6~90092-93372 DASH_Spc34 PF08657.5 g34073.t1 - 0.014 15 0.6 0.014 15 0.4 2.1 2 0 0 2 2 2 0 DASH complex subunit Spc34 | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:309248-316561 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~309248-316561 DUF2200 PF09966.4 g7203.t1 - 0.092 12.6 0.1 24 4.8 0 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2200) | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:17717-19827 Augustus predicted protein sequence Tomato scaffold389_contigs=8~17717-19827 Tup_N PF08581.5 g70506.t1 - 0.096 12.8 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 Tup N-terminal | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:117532-117927 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~117532-117927 OAD_gamma PF04277.8 g35078.t1 - 0.27 11.6 0.2 0.27 11.6 0.1 2.8 3 0 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:151633-153945 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~151633-153945 Neugrin PF06413.6 g67466.t1 - 0.045 13.5 1.5 0.07 12.9 1 1.2 1 0 0 1 1 1 0 Neugrin | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:487691-491756 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~487691-491756 Fer4_17 PF13534.1 g14964.t1 - 0.026 14.8 0.1 0.04 14.2 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:90268-91762 Augustus predicted protein sequence Tomato scaffold614_contigs=10~90268-91762 DUF1676 PF07898.8 g78975.t1 - 0.0076 16.5 1 0.013 15.7 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1676) | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:40665-41237 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~40665-41237 zf-CCHC PF00098.18 g82910.t1 - 0.00015 21.5 0.7 0.00028 20.6 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:261789-263192 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~261789-263192 Glyco_trans_1_2 PF13524.1 g76185.t1 - 0.18 12 1.7 6.7 7 0.2 2.2 2 0 0 2 2 2 0 Glycosyl transferases group 1 | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:93569-94114 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~93569-94114 ENOD40 PF08247.6 g68673.t1 - 0.0075 15.9 0.6 5.8 6.9 0 2.5 2 0 0 2 2 2 2 ENOD40 protein | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:45516-48111 Augustus predicted protein sequence Tomato scaffold2224_contigs=19~45516-48111 DUF3639 PF12341.3 g75704.t1 - 0.011 15.7 1.6 4 7.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:28736-29189 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~28736-29189 Vac_Fusion PF02346.11 g80402.t1 - 3.2 7.2 8.2 12 5.4 0.7 2.3 2 0 0 2 2 2 0 Chordopoxvirus fusion protein | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:281920-282561 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~281920-282561 IBV_3A PF03617.8 g5613.t1 - 0.054 13.2 0.4 0.084 12.6 0.3 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:135726-136121 Augustus predicted protein sequence Tomato scaffold334_contigs=13~135726-136121 ATHILA PF03078.10 g28574.t1 - 1.2 7.6 3.1 1.5 7.3 2.1 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:25144-28221 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~25144-28221 YobH PF13996.1 g28973.t1 - 0.033 14 1.5 8.9 6.3 0.1 2.5 2 0 0 2 2 2 0 YobH-like protein | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:51578-56240 Augustus predicted protein sequence Tomato scaffold1011_contigs=17~51578-56240 DUF3893 PF13032.1 g16734.t1 - 0.0082 16.2 0.2 0.0086 16.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3893) | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:2536-2772 Augustus predicted protein sequence Tomato scaffold679_contigs=3~2536-2772 Plug_translocon PF10559.4 g8910.t1 - 0.089 12.3 0.1 0.16 11.4 0.1 1.5 1 0 0 1 1 1 0 Plug domain of Sec61p | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:269679-270859 Augustus predicted protein sequence Tomato scaffold442_contigs=14~269679-270859 PA-IL PF07828.7 g79080.t1 - 0.084 12.6 0.1 0.4 10.4 0 2 2 0 0 2 2 2 0 PA-IL-like protein | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:99499-100854 Augustus predicted protein sequence Tomato scaffold2684_contigs=8~99499-100854 UBN2 PF14223.1 g86018.t1 - 0.094 12.5 0 0.14 11.9 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:49556-50942 Augustus predicted protein sequence Tomato scaffold2832_contigs=1~49556-50942 H_kinase_N PF12282.3 g81850.t1 - 0.054 13 0 0.083 12.4 0 1.2 1 1 0 1 1 1 0 Signal transduction histidine kinase | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1074836-1075069 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~1074836-1075069 LCE PF14672.1 g67879.t1 - 0.1 13 0.5 0.14 12.6 0.3 1.3 1 1 0 1 1 1 0 Late cornified envelope | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:110177-110787 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~110177-110787 DegS PF05384.6 g61680.t1 - 0.0028 16.8 0.9 0.0028 16.8 0.6 1.6 2 0 0 2 2 2 1 Sensor protein DegS | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:83642-84359 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~83642-84359 FXR1P_C PF12235.3 g53007.t1 - 0.018 15.1 4.6 0.023 14.8 3.2 1.2 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:57705-58593 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~57705-58593 NNMT_PNMT_TEMT PF01234.12 g27388.t1 - 0.11 11.4 0 0.14 11 0 1.1 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:63695-64112 Augustus predicted protein sequence Tomato scaffold976_contigs=1~63695-64112 FH2 PF02181.18 g16790.t1 - 0.037 12.9 0.2 0.043 12.7 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:39220-41166 Augustus predicted protein sequence Tomato scaffold682_contigs=5~39220-41166 HOOK PF05622.7 g66945.t1 - 0.00019 19.3 1.8 0.00026 18.9 1.3 1.1 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:173706-175992 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~173706-175992 Herpes_UL14 PF03580.9 g84706.t1 - 0.12 12.1 0.6 0.16 11.7 0.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL14-like protein | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:110145-110540 Augustus predicted protein sequence Tomato scaffold2777_contigs=1~110145-110540 DUF1690 PF07956.6 g85780.t1 - 1.3 8.9 10.2 2.6 8 7.1 1.7 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:52604-53047 Augustus predicted protein sequence Tomato scaffold2818_contigs=1~52604-53047 DUF3152 PF11350.3 g13799.t1 - 0.005 16.3 0 0.0062 16 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3152) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:220356-220895 Augustus predicted protein sequence Tomato scaffold582_contigs=8~220356-220895 zf-CCHC_4 PF14392.1 g38243.t1 - 0.02 14.5 0.9 0.035 13.7 0.6 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:721592-721855 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~721592-721855 TRL PF13146.1 g14000.t1 - 0.11 12.4 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 TRL-like protein family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:168202-168456 Augustus predicted protein sequence Tomato scaffold583_contigs=2~168202-168456 Exo70 PF03081.10 g64148.t1 - 0.036 12.8 0 0.063 12 0 1.4 1 0 0 1 1 1 0 Exo70 exocyst complex subunit | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:274691-277701 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~274691-277701 Crust_neurohorm PF01147.12 g49343.t1 - 0.48 9.7 2.9 9.5 5.6 0.6 2.6 2 1 1 3 3 3 0 Crustacean CHH/MIH/GIH neurohormone family | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:106753-107070 Augustus predicted protein sequence Tomato scaffold1535_contigs=9~106753-107070 SOCS_box PF07525.11 g77719.t1 - 0.041 13.7 0.7 0.093 12.6 0.1 1.8 2 0 0 2 2 2 0 SOCS box | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:124955-125434 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~124955-125434 Nop14 PF04147.7 g77446.t1 - 0.076 10.9 14.9 0.074 10.9 10.3 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:365405-365788 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~365405-365788 DUF3294 PF07957.6 g72801.t1 - 0.0083 15.6 0.2 0.011 15.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3294) | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:133678-133983 Augustus predicted protein sequence Tomato scaffold2426_contigs=10~133678-133983 CENP-T PF15511.1 g58931.t1 - 0.71 9 13.5 0.83 8.8 9.4 1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:345195-346096 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~345195-346096 DUF3331 PF11811.3 g38311.t1 - 0.048 13.2 0.1 0.059 12.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3331) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:964878-965090 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~964878-965090 Sigma70_ner PF04546.8 g60651.t1 - 0.17 11.4 11 0.014 15 4.4 1.6 2 0 0 2 2 2 0 Sigma-70, non-essential region | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:234572-235910 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~234572-235910 PAH PF02671.16 g85705.t1 - 0.12 12 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 Paired amphipathic helix repeat | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:30603-30845 Augustus predicted protein sequence Tomato scaffold2815_contigs=1~30603-30845 Endotoxin_mid PF09131.5 g20216.t1 - 0.01 15.3 0 0.012 15.1 0 1.1 1 0 0 1 1 1 0 Bacillus thuringiensis delta-Endotoxin, middle domain | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:307534-308941 Augustus predicted protein sequence Tomato scaffold768_contigs=4~307534-308941 CP2 PF04516.10 g27911.t1 - 0.15 11.1 0 0.19 10.7 0 1.1 1 0 0 1 1 1 0 CP2 transcription factor | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:83529-85635 Augustus predicted protein sequence Tomato scaffold987_contigs=6~83529-85635 TrmB PF01978.14 g24300.t1 - 0.12 12 0.1 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:49135-51905 Augustus predicted protein sequence Tomato scaffold880_contigs=9~49135-51905 Polysacc_synt_3 PF13440.1 g85908.t1 - 0.02 14.3 3.6 0.066 12.6 1.3 1.9 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:47903-48265 Augustus predicted protein sequence Tomato scaffold2827_contigs=1~47903-48265 CENP-B_dimeris PF09026.5 g48519.t1 - 0.22 11.7 5.8 0.41 10.9 4 1.4 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:168803-170962 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~168803-170962 DUF1168 PF06658.7 g59738.t1 - 0.39 10.2 32.9 0.025 14 19.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1168) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:148019-149537 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~148019-149537 WEMBL PF05701.6 g12276.t1 - 0.00034 19.2 7.9 0.036 12.5 1.7 2.1 1 1 1 2 2 2 2 Weak chloroplast movement under blue light | Ref_seq=scaffold545_contigs=3, transcript_loc=scaffold545_contigs=3:17858-18574 Augustus predicted protein sequence Tomato scaffold545_contigs=3~17858-18574 DUF4231 PF14015.1 g52924.t1 - 0.084 12.8 0.1 0.1 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) | Ref_seq=scaffold1664_contigs=9, transcript_loc=scaffold1664_contigs=9:103114-105520 Augustus predicted protein sequence Tomato scaffold1664_contigs=9~103114-105520 SFTA2 PF15210.1 g38876.t1 - 0.99 9 4.1 18 4.9 0 2.8 3 0 0 3 3 3 0 Surfactant-associated protein 2 | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:102410-102940 Augustus predicted protein sequence Tomato scaffold1253_contigs=5~102410-102940 DUF605 PF04652.11 g54666.t1 - 3.2 7 5.6 3.6 6.8 3.9 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:100985-102757 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~100985-102757 Adeno_PIX PF03955.9 g27670.t1 - 0.017 15.6 1.5 0.022 15.2 1.1 1.2 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:228013-228419 Augustus predicted protein sequence Tomato scaffold983_contigs=13~228013-228419 ATHILA PF03078.10 g35651.t1 - 0.0000002 29.9 0 0.0000003 29.4 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1151720-1153574 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~1151720-1153574 Transgly PF00912.17 g46663.t1 - 0.16 11.2 0 0.23 10.7 0 1.2 1 0 0 1 1 1 0 Transglycosylase | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:87612-89169 Augustus predicted protein sequence Tomato scaffold1484_contigs=2~87612-89169 VGCC_beta4Aa_N PF12052.3 g17110.t1 - 0.024 14.5 0.4 0.032 14 0.3 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:197213-197632 Augustus predicted protein sequence Tomato scaffold694_contigs=2~197213-197632 Not3 PF04065.10 g75129.t1 - 0.1 11.8 5 0.13 11.5 3.5 1 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:388579-388914 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~388579-388914 MHC_II_beta PF00969.14 g86086.t1 - 0.018 14.9 0.1 8.7 6.4 0 2.3 2 0 0 2 2 2 0 Class II histocompatibility antigen, beta domain | Ref_seq=scaffold2836_contigs=1, transcript_loc=scaffold2836_contigs=1:8751-10416 Augustus predicted protein sequence Tomato scaffold2836_contigs=1~8751-10416 CBF_beta PF02312.12 g76495.t1 - 0.03 13.9 0 0.044 13.3 0 1.2 1 0 0 1 1 1 0 Core binding factor beta subunit | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:28742-33368 Augustus predicted protein sequence Tomato scaffold2632_contigs=8~28742-33368 Glyoxalase_3 PF13468.1 g54234.t1 - 0.014 15.3 0 0.018 14.9 0 1.1 1 0 0 1 1 1 0 Glyoxalase-like domain | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:99134-99573 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~99134-99573 DUF4482 PF14818.1 g31382.t1 - 0.049 14.2 5.5 0.065 13.8 3.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4482) | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:107738-109094 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~107738-109094 PsbX PF06596.6 g72140.t1 - 0.0075 15.9 1.1 0.03 14 0 1.9 2 0 0 2 2 2 1 Photosystem II reaction centre X protein (PsbX) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:332999-333262 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~332999-333262 DUF746 PF05344.6 g457.t1 - 0.041 13.4 0 0.061 12.8 0 1.3 1 1 0 1 1 1 0 Domain of Unknown Function (DUF746) | Ref_seq=scaffold40_contigs=3, transcript_loc=scaffold40_contigs=3:61719-62018 Augustus predicted protein sequence Tomato scaffold40_contigs=3~61719-62018 DUF3763 PF12592.3 g2342.t1 - 0.041 13.5 0 0.052 13.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3763) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:1-248 Augustus predicted protein sequence Tomato scaffold235_contigs=2~1-248 Myb_Cef PF11831.3 g63767.t1 - 0.099 11.8 1.4 0.11 11.7 1 1 1 0 0 1 1 1 0 pre-mRNA splicing factor component | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:127595-131608 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~127595-131608 YdjO PF14169.1 g25798.t1 - 0.12 11.8 0 0.19 11.2 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:119151-119462 Augustus predicted protein sequence Tomato scaffold933_contigs=12~119151-119462 Pentapeptide_3 PF13576.1 g6243.t1 - 0.12 12.2 2.2 3.3 7.6 0.9 3.3 3 1 0 3 3 3 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:116450-118804 Augustus predicted protein sequence Tomato scaffold355_contigs=5~116450-118804 ATHILA PF03078.10 g64561.t1 - 0.0013 17.3 0 0.0016 17.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:345421-345762 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~345421-345762 Sbi-IV PF11621.3 g15229.t1 - 0.0079 16.3 0.1 0.012 15.7 0.1 1.3 1 0 0 1 1 1 1 C3 binding domain 4 of IgG-bind protein SBI | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:55644-56003 Augustus predicted protein sequence Tomato scaffold623_contigs=13~55644-56003 HC2 PF07382.6 g32123.t1 - 0.0045 16.8 8.6 0.0051 16.7 5.9 1.1 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:450827-451174 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~450827-451174 GerPB PF10803.3 g77296.t1 - 0.082 12.6 0.7 0.13 11.9 0.5 1.3 1 0 0 1 1 1 0 Spore germination GerPB | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:242908-243283 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~242908-243283 L31 PF09784.4 g70574.t1 - 0.019 15 0 47 4.1 0 3.2 3 0 0 3 3 3 0 Mitochondrial ribosomal protein L31 | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:13900-20676 Augustus predicted protein sequence Tomato scaffold2343_contigs=14~13900-20676 Retrotrans_gag PF03732.12 g74066.t1 - 0.00016 21.6 0.1 0.00019 21.3 0 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:361458-361748 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~361458-361748 FliG_C PF01706.11 g28360.t1 - 0.01 15.7 0.3 0.013 15.5 0.2 1.3 1 1 0 1 1 1 0 FliG C-terminal domain | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:1733-3023 Augustus predicted protein sequence Tomato scaffold999_contigs=6~1733-3023 I_LWEQ PF01608.12 g85426.t1 - 0.093 12.6 0.7 0.097 12.6 0.5 1.1 1 0 0 1 1 1 0 I/LWEQ domain | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:56453-56752 Augustus predicted protein sequence Tomato scaffold2803_contigs=1~56453-56752 GKAP PF03359.8 g51539.t1 - 0.34 10.4 5 0.43 10.1 3.5 1.1 1 0 0 1 1 1 0 Guanylate-kinase-associated protein (GKAP) protein | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:257266-258086 Augustus predicted protein sequence Tomato scaffold1616_contigs=7~257266-258086 FBD PF08387.5 g15019.t1 - 0.12 11.8 0 0.24 10.8 0 1.5 1 0 0 1 1 1 0 FBD | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:94784-98433 Augustus predicted protein sequence Tomato scaffold616_contigs=8~94784-98433 Baculo_VP39 PF04501.7 g60555.t1 - 0.015 14.3 0.4 0.017 14.1 0.3 1 1 0 0 1 1 1 0 Baculovirus major capsid protein VP39 | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:11365-11622 Augustus predicted protein sequence Tomato scaffold1955_contigs=3~11365-11622 WSN PF02206.13 g64418.t1 - 0.014 15.1 0 5.6 6.7 0 2.3 2 0 0 2 2 2 0 Domain of unknown function | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:36204-37559 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~36204-37559 Inhibitor_I71 PF12628.2 g1627.t1 - 1.1 8.9 0 1.1 8.9 0 2.3 2 1 0 2 2 2 0 Falstatin, cysteine peptidase inhibitor | Ref_seq=scaffold212_contigs=2, transcript_loc=scaffold212_contigs=2:22466-24006 Augustus predicted protein sequence Tomato scaffold212_contigs=2~22466-24006 HXXSHH PF07586.6 g84345.t1 - 0.13 11.1 0.6 0.2 10.5 0.2 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:116024-116467 Augustus predicted protein sequence Tomato scaffold2767_contigs=1~116024-116467 IncA PF04156.9 g82317.t1 - 0.034 13.7 1.8 0.064 12.8 1.3 1.3 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:136754-140455 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~136754-140455 Shisa PF13908.1 g65352.t1 - 0.94 9.6 7.4 1.4 9 5.1 1.3 1 1 0 1 1 1 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:241416-242336 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~241416-242336 DUF4583 PF15190.1 g49665.t1 - 0.2 11.3 2.1 0.22 11.1 0.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4583) | Ref_seq=scaffold1544_contigs=6, transcript_loc=scaffold1544_contigs=6:99103-99810 Augustus predicted protein sequence Tomato scaffold1544_contigs=6~99103-99810 UPF0547 PF10571.4 g3930.t1 - 0.006 16.2 0.7 0.12 12 0 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:62634-63442 Augustus predicted protein sequence Tomato scaffold283_contigs=2~62634-63442 IFP_35_N PF07334.8 g60229.t1 - 0.11 12.4 2.4 0.7 9.8 0.2 2.5 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1944_contigs=2, transcript_loc=scaffold1944_contigs=2:9968-12580 Augustus predicted protein sequence Tomato scaffold1944_contigs=2~9968-12580 DUF334 PF03904.8 g27657.t1 - 0.053 12.8 0.2 0.056 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF334) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:192298-192537 Augustus predicted protein sequence Tomato scaffold983_contigs=13~192298-192537 YqcI_YcgG PF08892.6 g40706.t1 - 0.13 11.8 0.5 0.18 11.3 0.3 1.1 1 0 0 1 1 1 0 YqcI/YcgG family | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:112884-113267 Augustus predicted protein sequence Tomato scaffold1308_contigs=16~112884-113267 GRP PF07172.6 g45994.t1 - 4.9 7.7 76.8 15000 -13.6 53.2 2.9 1 1 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:32169-34923 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~32169-34923 Endonuc_Holl PF10107.4 g68712.t1 - 0.05 13.2 0 0.062 12.9 0 1.3 1 1 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:66686-67669 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~66686-67669 zf-C2H2_6 PF13912.1 g22857.t1 - 0.00043 20 0.7 0.00065 19.5 0.5 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:1202225-1202554 Augustus predicted protein sequence Tomato scaffold834_contigs=26~1202225-1202554 TFIIH_BTF_p62_N PF08567.6 g35840.t1 - 0.081 12.5 1.2 1 9 0.2 2.3 1 1 1 2 2 2 0 TFIIH p62 subunit, N-terminal domain | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:710310-710537 Augustus predicted protein sequence Tomato scaffold1183_contigs=24~710310-710537 DUF2695 PF10905.3 g74614.t1 - 0.032 13.9 0.1 0.05 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2695) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:162388-162663 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~162388-162663 HD_4 PF13328.1 g80330.t1 - 0.21 11.2 3.8 0.26 10.9 2 1.6 1 1 1 2 2 2 0 HD domain | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:91604-93503 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~91604-93503 DUF1510 PF07423.6 g34578.t1 - 0.0061 15.9 4.8 0.0073 15.7 3.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:338523-339205 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~338523-339205 VLPT PF07122.6 g68769.t1 - 1.6 8.4 5.2 43 3.8 0.1 3.9 4 0 0 4 4 4 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:272442-276744 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~272442-276744 zf-CCHC PF00098.18 g31548.t1 - 0.0001 22 2.6 0.0001 22 1.8 2.3 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:162680-162985 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~162680-162985 DUF1395 PF07160.7 g76889.t1 - 0.11 11.9 0.1 0.39 10.1 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:206317-206886 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~206317-206886 DUF4219 PF13961.1 g76350.t1 - 0.089 12.2 0.5 0.14 11.6 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:131044-131496 Augustus predicted protein sequence Tomato scaffold2624_contigs=4~131044-131496 RVT_3 PF13456.1 g15192.t1 - 0.0029 17.3 0 0.0039 16.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:102959-103219 Augustus predicted protein sequence Tomato scaffold621_contigs=9~102959-103219 ATHILA PF03078.10 g40900.t1 - 0.000077 21.4 0.1 0.00015 20.4 0.1 1.4 1 1 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:84080-84406 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~84080-84406 DUF3053 PF11254.3 g5144.t1 - 0.18 11 0.8 0.21 10.8 0.5 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3053) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:499545-499922 Augustus predicted protein sequence Tomato scaffold315_contigs=11~499545-499922 LURAP PF14854.1 g6250.t1 - 0.42 10.3 2.9 8.3 6.1 0.2 2.6 1 1 2 3 3 3 0 Leucine rich adaptor protein | Ref_seq=scaffold356_contigs=12, transcript_loc=scaffold356_contigs=12:29376-29699 Augustus predicted protein sequence Tomato scaffold356_contigs=12~29376-29699 ATHILA PF03078.10 g82613.t1 - 0.0000015 27 0.1 0.0000049 25.3 0 1.6 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:225999-226470 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~225999-226470 ATHILA PF03078.10 g7741.t1 - 0.000032 22.7 0.1 0.000039 22.4 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:177491-177880 Augustus predicted protein sequence Tomato scaffold406_contigs=8~177491-177880 COMP PF11598.3 g7072.t1 - 0.2 11.7 0.9 1.8 8.6 0.1 2.1 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:15101-16966 Augustus predicted protein sequence Tomato scaffold387_contigs=7~15101-16966 Nop14 PF04147.7 g14501.t1 - 0.000097 20.4 6.2 0.000097 20.4 4.3 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:13213-22261 Augustus predicted protein sequence Tomato scaffold595_contigs=2~13213-22261 Glycos_transf_3 PF00591.16 g70059.t1 - 0.0056 16.1 0.1 1.9 7.8 0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family, a/b domain | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:39292-39730 Augustus predicted protein sequence Tomato scaffold2321_contigs=13~39292-39730 ParBc_2 PF08857.6 g30907.t1 - 0.006 16.4 0 0.007 16.1 0 1.1 1 0 0 1 1 1 1 Putative ParB-like nuclease | Ref_seq=scaffold1050_contigs=5, transcript_loc=scaffold1050_contigs=5:84193-84558 Augustus predicted protein sequence Tomato scaffold1050_contigs=5~84193-84558 UvrD_C_2 PF13538.1 g6331.t1 - 0.033 14.3 0 0.062 13.4 0 1.5 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain | Ref_seq=scaffold361_contigs=3, transcript_loc=scaffold361_contigs=3:2092-2598 Augustus predicted protein sequence Tomato scaffold361_contigs=3~2092-2598 EBV-NA3 PF05009.7 g28092.t1 - 0.039 13.2 0.9 0.04 13.1 0.6 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:339626-339853 Augustus predicted protein sequence Tomato scaffold990_contigs=6~339626-339853 Kelch_1 PF01344.20 g67404.t1 - 1.3 8.6 4.3 3.6 7.2 0.4 2.6 2 1 0 2 2 2 0 Kelch motif | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:125899-127102 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~125899-127102 DBD_Tnp_Mut PF03108.10 g55066.t1 - 4.1E-009 35.8 0 8.9E-009 34.8 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:78650-79364 Augustus predicted protein sequence Tomato scaffold1736_contigs=8~78650-79364 Rgp1 PF08737.5 g34178.t1 - 0.11 11.5 0 0.14 11.2 0 1 1 0 0 1 1 1 0 Rgp1 | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:100008-100427 Augustus predicted protein sequence Tomato scaffold1144_contigs=4~100008-100427 Nucleoplasmin PF03066.10 g39552.t1 - 0.11 12 10 0.093 12.2 6.9 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:240398-243296 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~240398-243296 Transposase_24 PF03004.9 g82333.t1 - 0.39 10.5 3 0.28 11 0.4 1.9 1 1 1 2 2 2 0 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:195774-196876 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~195774-196876 Ofd1_CTDD PF10637.4 g82113.t1 - 0.04 13 0.5 0.049 12.7 0.3 1.1 1 0 0 1 1 1 0 Oxoglutarate and iron-dependent oxygenase degradation C-term | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:294003-294362 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~294003-294362 Bac_export_2 PF01312.14 g59223.t1 - 0.36 9.6 3.3 0.4 9.5 2.3 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family | Ref_seq=scaffold1902_contigs=4, transcript_loc=scaffold1902_contigs=4:8126-8635 Augustus predicted protein sequence Tomato scaffold1902_contigs=4~8126-8635 PBP_sp32 PF07222.7 g20188.t1 - 0.64 9.1 4.8 1 8.4 3.3 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:191675-192460 Augustus predicted protein sequence Tomato scaffold768_contigs=4~191675-192460 Streptin-Immun PF11083.3 g26239.t1 - 0.094 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:267324-267785 Augustus predicted protein sequence Tomato scaffold945_contigs=10~267324-267785 CCDC155 PF14662.1 g28680.t1 - 0.022 14.3 3.4 0.029 13.9 2.4 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:13246-14919 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~13246-14919 Paired_CXXCH_1 PF09699.5 g50909.t1 - 0.029 13.8 0.1 0.058 12.9 0 1.5 1 0 0 1 1 1 0 Doubled CXXCH motif (Paired_CXXCH_1) | Ref_seq=scaffold1578_contigs=2, transcript_loc=scaffold1578_contigs=2:52679-55041 Augustus predicted protein sequence Tomato scaffold1578_contigs=2~52679-55041 DUF4283 PF14111.1 g86821.t1 - 0.0011 18 0 0.0015 17.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2898_contigs=1, transcript_loc=scaffold2898_contigs=1:450-1091 Augustus predicted protein sequence Tomato scaffold2898_contigs=1~450-1091 EF-hand_9 PF14658.1 g64863.t1 - 0.079 12.8 0.1 12 5.8 0.1 2.9 1 1 1 2 2 2 0 EF-hand domain | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:208910-209561 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~208910-209561 DUF4423 PF14394.1 g47899.t1 - 0.027 14 0 0.066 12.7 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:28700-31684 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~28700-31684 DUF1153 PF06627.6 g24523.t1 - 0.15 11.9 0.3 0.27 11.1 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1153) | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:24424-25335 Augustus predicted protein sequence Tomato scaffold886_contigs=4~24424-25335 DUF2948 PF11164.3 g61497.t1 - 0.16 11.5 0.5 0.21 11.2 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2948) | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:557940-558484 Augustus predicted protein sequence Tomato scaffold1970_contigs=14~557940-558484 DUF241 PF03087.9 g34670.t1 - 0.028 13.9 0.5 0.049 13.1 0.3 1.4 1 0 0 1 1 1 0 Arabidopsis protein of unknown function | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:247551-248686 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~247551-248686 DUF1626 PF07788.6 g44599.t1 - 0.029 14.1 0 0.065 13 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1626) | Ref_seq=scaffold1433_contigs=7, transcript_loc=scaffold1433_contigs=7:6242-8917 Augustus predicted protein sequence Tomato scaffold1433_contigs=7~6242-8917 Utp11 PF03998.8 g5371.t1 - 0.012 15.4 1.9 0.015 15 1.3 1.3 1 0 0 1 1 1 0 Utp11 protein | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:181685-183642 Augustus predicted protein sequence Tomato scaffold325_contigs=5~181685-183642 NAM-associated PF14303.1 g39938.t1 - 0.00083 19.6 1.1 0.00093 19.5 0.7 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1284_contigs=5, transcript_loc=scaffold1284_contigs=5:13884-14276 Augustus predicted protein sequence Tomato scaffold1284_contigs=5~13884-14276 DUF843 PF05814.6 g77635.t1 - 6.8 6.5 7.5 23 4.8 0.2 2.2 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:283195-283794 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~283195-283794 Daxx PF03344.10 g69960.t1 - 0.012 14 13.4 0.014 13.8 9.3 1.2 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:25222-28593 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~25222-28593 Cylicin_N PF15241.1 g21143.t1 - 0.064 13.1 1.1 0.078 12.8 0.5 1.4 1 1 0 1 1 1 0 Cylicin N-terminus | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:323761-325535 Augustus predicted protein sequence Tomato scaffold793_contigs=9~323761-325535 FlxA PF14282.1 g50779.t1 - 0.079 12.9 5.1 0.1 12.5 3.5 1.1 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:49402-49665 Augustus predicted protein sequence Tomato scaffold1570_contigs=4~49402-49665 HALZ PF02183.13 g56900.t1 - 0.34 10.6 5.8 3.1 7.5 1.2 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:29108-30044 Augustus predicted protein sequence Tomato scaffold1822_contigs=5~29108-30044 MHCassoc_trimer PF08831.5 g72387.t1 - 0.059 13.2 1.1 0.14 11.9 0.7 1.6 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1261951-1263361 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1261951-1263361 RR_TM4-6 PF06459.7 g43192.t1 - 0.29 10.9 3.6 0.36 10.6 2.5 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:35981-36569 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~35981-36569 SCRG1 PF15224.1 g38656.t1 - 0.051 13.3 0 0.072 12.9 0 1.3 1 0 0 1 1 1 0 Scrapie-responsive protein 1 | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:37791-38054 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~37791-38054 RVT_3 PF13456.1 g22811.t1 - 0.014 15.1 0.1 0.02 14.6 0.1 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:861443-863832 Augustus predicted protein sequence Tomato scaffold834_contigs=26~861443-863832 ACPS PF01648.15 g83787.t1 - 0.0037 17 1.6 1.2 9 0 2.5 2 1 0 2 2 2 2 4'-phosphopantetheinyl transferase superfamily | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1807526-1808365 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1807526-1808365 ATHILA PF03078.10 g52164.t1 - 0.00000021 29.9 0 0.00000024 29.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:270942-271283 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~270942-271283 DUF2416 PF10315.4 g27754.t1 - 0.068 13.4 0 0.12 12.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2416) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:624546-625911 Augustus predicted protein sequence Tomato scaffold983_contigs=13~624546-625911 PAT1 PF09770.4 g25122.t1 - 4.4 5.4 13.5 5.1 5.2 9.4 1.2 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold916_contigs=9, transcript_loc=scaffold916_contigs=9:32918-34045 Augustus predicted protein sequence Tomato scaffold916_contigs=9~32918-34045 DUF2786 PF10979.3 g59926.t1 - 0.11 12.2 1.7 0.2 11.3 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2786) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:314494-314787 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~314494-314787 DUF4267 PF14087.1 g61557.t1 - 0.084 12.4 0.5 0.48 10 0.1 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4267) | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:249377-249778 Augustus predicted protein sequence Tomato scaffold1971_contigs=11~249377-249778 ELFV_dehydrog_N PF02812.13 g23380.t1 - 0.12 11.9 0 0.16 11.5 0 1.2 1 0 0 1 1 1 0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:24431-24808 Augustus predicted protein sequence Tomato scaffold859_contigs=6~24431-24808 HR1 PF02185.11 g24424.t1 - 0.03 14 1 0.062 13 0.7 1.6 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:545401-546882 Augustus predicted protein sequence Tomato scaffold880_contigs=9~545401-546882 CENP-F_N PF10481.4 g49638.t1 - 0.012 15 3.3 0.015 14.6 2.3 1.2 1 0 0 1 1 1 0 Cenp-F N-terminal domain | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:247693-250753 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~247693-250753 DUF655 PF04919.7 g51233.t1 - 0.068 12.8 0.1 0.076 12.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF655) | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:119897-121054 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~119897-121054 Pardaxin PF07425.6 g16402.t1 - 0.078 12.3 0.1 0.2 11 0.1 1.7 1 0 0 1 1 1 0 Pardaxin | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:80484-81699 Augustus predicted protein sequence Tomato scaffold670_contigs=7~80484-81699 Ras_bdg_2 PF14847.1 g85178.t1 - 0.049 13.5 0 0.056 13.3 0 1.1 1 0 0 1 1 1 0 Ras-binding domain of Byr2 | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:64667-66110 Augustus predicted protein sequence Tomato scaffold2793_contigs=1~64667-66110 DUF2310 PF10071.4 g87681.t1 - 0.011 14.7 0.2 0.012 14.5 0.1 1 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) | Ref_seq=scaffold3616_contigs=1, transcript_loc=scaffold3616_contigs=1:796-1217 Augustus predicted protein sequence Tomato scaffold3616_contigs=1~796-1217 rve PF00665.21 g56515.t1 - 0.14 12.2 0 0.25 11.4 0 1.4 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:74264-75237 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~74264-75237 YdjO PF14169.1 g29054.t1 - 0.0058 16 0.3 0.0091 15.4 0.2 1.4 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:400814-401212 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~400814-401212 DUF4608 PF15381.1 g430.t1 - 4.4 7.5 8.8 1.4 9.1 2.5 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:33276-33548 Augustus predicted protein sequence Tomato scaffold36_contigs=4~33276-33548 FancD2 PF14631.1 g55667.t1 - 0.057 10.5 0 0.077 10 0 1.1 1 0 0 1 1 1 0 Fanconi anaemia protein FancD2 nuclease | Ref_seq=scaffold1760_contigs=2, transcript_loc=scaffold1760_contigs=2:33830-43926 Augustus predicted protein sequence Tomato scaffold1760_contigs=2~33830-43926 TBPIP PF07106.8 g9992.t1 - 0.036 13.6 0.5 0.051 13.1 0.4 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:125706-126335 Augustus predicted protein sequence Tomato scaffold481_contigs=9~125706-126335 BSP PF04450.7 g18483.t1 - 0.0019 17.7 0 0.0021 17.5 0 1.1 1 0 0 1 1 1 1 Peptidase of plants and bacteria | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:38470-38808 Augustus predicted protein sequence Tomato scaffold725_contigs=8~38470-38808 IFT57 PF10498.4 g20168.t1 - 0.017 13.9 0.8 0.019 13.7 0.5 1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:131834-132364 Augustus predicted protein sequence Tomato scaffold768_contigs=4~131834-132364 Peptidase_C48 PF02902.14 g37897.t1 - 0.000097 22 0 0.00018 21.1 0 1.5 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:176564-179392 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~176564-179392 DUF641 PF04859.7 g21184.t1 - 0.014 15.1 3.2 0.029 14.1 2.2 1.6 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:20352-23441 Augustus predicted protein sequence Tomato scaffold795_contigs=8~20352-23441 Peptidase_S49_N PF08496.5 g48169.t1 - 0.73 9.6 3.4 1.3 8.7 2.4 1.5 1 1 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:95997-99424 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~95997-99424 DUF2116 PF09889.4 g52889.t1 - 0.41 10.4 2.9 0.57 10 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) | Ref_seq=scaffold1652_contigs=9, transcript_loc=scaffold1652_contigs=9:225708-226196 Augustus predicted protein sequence Tomato scaffold1652_contigs=9~225708-226196 PPP4R2 PF09184.6 g36050.t1 - 0.8 9.1 23.3 1.3 8.4 16.2 1.4 1 0 0 1 1 1 0 PPP4R2 | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:190652-191353 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~190652-191353 DNA_Packaging PF11053.3 g60136.t1 - 0.035 13.7 2.1 0.042 13.4 1.4 1.1 1 0 0 1 1 1 0 Terminase DNA packaging enzyme | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:130423-134947 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~130423-134947 PRCC PF10253.4 g40912.t1 - 0.033 14.8 0.2 0.039 14.6 0.1 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:155514-155738 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~155514-155738 Fzo_mitofusin PF04799.8 g38806.t1 - 0.017 14.5 3.3 0.027 13.8 2.3 1.4 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:137997-138518 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~137997-138518 Retrotrans_gag PF03732.12 g9390.t1 - 0.018 15.1 0 0.031 14.3 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:135622-135942 Augustus predicted protein sequence Tomato scaffold455_contigs=9~135622-135942 OAD_gamma PF04277.8 g43043.t1 - 0.049 14 1.1 0.23 11.8 0.7 1.9 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:239248-239559 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~239248-239559 PYST-C1 PF09690.5 g7405.t1 - 0.055 13.1 0.7 0.2 11.3 0.3 1.8 2 0 0 2 2 2 0 Plasmodium yoelii subtelomeric region (PYST-C1) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:195403-196698 Augustus predicted protein sequence Tomato scaffold395_contigs=7~195403-196698 DUF3543 PF12063.3 g64592.t1 - 0.02 14.1 0.1 0.023 13.9 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3543) | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:60561-60815 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~60561-60815 DUF479 PF04336.7 g77980.t1 - 0.011 15.8 0.2 0.013 15.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF479 | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:129403-129774 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~129403-129774 CALCOCO1 PF07888.6 g44820.t1 - 0.022 13 3.6 0.032 12.5 2.5 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:125646-127202 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~125646-127202 Imm6 PF14434.1 g30594.t1 - 0.1 12.3 0.1 0.64 9.7 0.1 2 2 0 0 2 2 2 0 Immunity protein Imm6 | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:290581-294187 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~290581-294187 DUF1654 PF07867.6 g62846.t1 - 0.034 13.5 0 0.057 12.7 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:66407-67519 Augustus predicted protein sequence Tomato scaffold2011_contigs=8~66407-67519 DUF3159 PF11361.3 g50654.t1 - 0.064 12.7 0.1 0.099 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:68865-75641 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~68865-75641 CreD PF06123.7 g39614.t1 - 0.041 12.4 0.1 0.049 12.1 0.1 1.1 1 0 0 1 1 1 0 Inner membrane protein CreD | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:473046-474024 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~473046-474024 zf-CCHC PF00098.18 g14230.t1 - 0.00000095 28.4 0.4 0.0000019 27.4 0.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:444382-444663 Augustus predicted protein sequence Tomato scaffold586_contigs=6~444382-444663 bZIP_1 PF00170.16 g14378.t1 - 0.34 10.8 4 0.42 10.6 1.1 2.1 2 0 0 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:117250-117576 Augustus predicted protein sequence Tomato scaffold594_contigs=19~117250-117576 Levi_coat PF01819.12 g64430.t1 - 0.079 12.5 0.2 0.14 11.7 0.2 1.4 1 0 0 1 1 1 0 Levivirus coat protein | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:93536-96644 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~93536-96644 SpoU_sub_bind PF08032.7 g69399.t1 - 0.06 13.5 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding | Ref_seq=scaffold2275_contigs=2, transcript_loc=scaffold2275_contigs=2:27836-29441 Augustus predicted protein sequence Tomato scaffold2275_contigs=2~27836-29441 Oxidored_q1_N PF00662.15 g73033.t1 - 5.7 6.5 6.4 5.7 6.5 0.4 2 1 1 1 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | Ref_seq=scaffold2443_contigs=3, transcript_loc=scaffold2443_contigs=3:6505-6978 Augustus predicted protein sequence Tomato scaffold2443_contigs=3~6505-6978 Resistin PF06954.6 g73455.t1 - 0.027 14.7 0.2 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 Resistin | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:25911-26267 Augustus predicted protein sequence Tomato scaffold2465_contigs=4~25911-26267 Cuticle_3 PF11018.3 g87262.t1 - 0.023 14.8 6.2 0.029 14.5 4.3 1.2 1 0 0 1 1 1 0 Pupal cuticle protein C1 | Ref_seq=scaffold2976_contigs=1, transcript_loc=scaffold2976_contigs=1:8311-8736 Augustus predicted protein sequence Tomato scaffold2976_contigs=1~8311-8736 ATHILA PF03078.10 g27896.t1 - 2.9E-010 39.3 1.8 4.3E-010 38.7 1.3 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:28638-31476 Augustus predicted protein sequence Tomato scaffold987_contigs=6~28638-31476 BTV_NS2 PF04514.7 g42146.t1 - 0.068 12 2.3 0.079 11.8 1.6 1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:159257-159625 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~159257-159625 V_ATPase_I PF01496.14 g71314.t1 - 0.054 11.3 1 0.056 11.2 0.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:312950-313614 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~312950-313614 Peptidase_S29 PF02907.10 g68351.t1 - 0.041 13.4 0.2 0.06 12.8 0.1 1.3 1 1 0 1 1 1 0 Hepatitis C virus NS3 protease | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:128675-128947 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~128675-128947 Pex24p PF06398.6 g77771.t1 - 0.048 12.4 0 0.049 12.4 0 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:326006-326305 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~326006-326305 DUF2406 PF10295.4 g9164.t1 - 0.042 14.3 0 0.057 13.9 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein (DUF2406) | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:156975-157301 Augustus predicted protein sequence Tomato scaffold448_contigs=2~156975-157301 Nup54 PF13874.1 g81301.t1 - 0.0012 18.5 2.9 0.0013 18.4 2 1 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:265215-265472 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~265215-265472 Retrotrans_gag PF03732.12 g31242.t1 - 1.1E-009 38.2 0.2 0.0013 18.7 0 2.4 2 0 0 2 2 2 2 Retrotransposon gag protein | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:207129-209734 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~207129-209734 DUF2418 PF10332.4 g39799.t1 - 0.39 11 2.6 0.6 10.4 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2418) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:290086-291761 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~290086-291761 DUF1347 PF07079.6 g58829.t1 - 0.061 11.5 0.1 0.099 10.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:427749-429328 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~427749-429328 Daxx PF03344.10 g31769.t1 - 0.0011 17.5 4.5 0.0011 17.5 3.1 1.1 1 0 0 1 1 1 1 Daxx Family | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:50285-50794 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~50285-50794 AvrB_AvrC PF05394.6 g34779.t1 - 0.078 11.9 0 0.079 11.9 0 1 1 0 0 1 1 1 0 Avirulence protein | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:170794-171397 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~170794-171397 Cauli_AT PF03233.8 g8828.t1 - 0.02 14.5 3.9 0.037 13.7 2.7 1.5 1 0 0 1 1 1 0 Aphid transmission protein | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:148629-152426 Augustus predicted protein sequence Tomato scaffold441_contigs=5~148629-152426 BHD_2 PF10404.4 g50841.t1 - 0.047 14 1 52 4.2 0 3.2 3 0 0 3 3 3 0 Rad4 beta-hairpin domain 2 | Ref_seq=scaffold1571_contigs=3, transcript_loc=scaffold1571_contigs=3:11325-12478 Augustus predicted protein sequence Tomato scaffold1571_contigs=3~11325-12478 Minor_tail_Z PF06763.6 g80692.t1 - 0.017 14.8 0 0.02 14.5 0 1.1 1 0 0 1 1 1 0 Prophage minor tail protein Z (GPZ) | Ref_seq=scaffold2717_contigs=3, transcript_loc=scaffold2717_contigs=3:12648-12890 Augustus predicted protein sequence Tomato scaffold2717_contigs=3~12648-12890 DUF4618 PF15397.1 g25863.t1 - 0.06 12.6 1.9 0.067 12.5 1.3 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:62912-63220 Augustus predicted protein sequence Tomato scaffold937_contigs=20~62912-63220 Rox3 PF08633.5 g79525.t1 - 0.013 15.8 0.6 0.015 15.6 0.4 1.2 1 0 0 1 1 1 0 Rox3 mediator complex subunit | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:176026-176606 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~176026-176606 DUF329 PF03884.9 g39648.t1 - 0.11 12 0.3 0.23 11 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold1274_contigs=5, transcript_loc=scaffold1274_contigs=5:9737-10752 Augustus predicted protein sequence Tomato scaffold1274_contigs=5~9737-10752 Glyco_transf_7N PF13733.1 g43243.t1 - 0.082 12.2 0 0.11 11.8 0 1.2 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:232818-234840 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~232818-234840 Nop14 PF04147.7 g54162.t1 - 0.18 9.6 5.1 0.23 9.3 3.6 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:171945-172951 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~171945-172951 Bunya_NS-S PF01104.12 g74129.t1 - 0.037 13.4 2.1 3.7 7.1 0.2 2.1 1 1 1 2 2 2 0 Bunyavirus non-structural protein NS-s | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:37489-37740 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~37489-37740 bZIP_1 PF00170.16 g29280.t1 - 0.086 12.8 0.6 0.14 12.1 0.4 1.3 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:162904-163363 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~162904-163363 DUF2840 PF11000.3 g56957.t1 - 0.099 12.1 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2840) | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:165373-165642 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~165373-165642 DUF4290 PF14123.1 g84159.t1 - 0.14 11.3 0.3 1.7 7.7 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:215325-221659 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~215325-221659 DUF1015 PF06245.6 g8723.t1 - 0.024 13.1 0.1 0.027 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:28132-29062 Augustus predicted protein sequence Tomato scaffold434_contigs=1~28132-29062 GRDA PF04723.9 g53059.t1 - 0.012 15.3 0.2 0.017 14.8 0.1 1.2 1 0 0 1 1 1 0 Glycine reductase complex selenoprotein A | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:22924-24608 Augustus predicted protein sequence Tomato scaffold1674_contigs=9~22924-24608 CtIP_N PF10482.4 g8876.t1 - 0.064 13 2.7 0.093 12.5 1.9 1.3 1 1 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:65177-65663 Augustus predicted protein sequence Tomato scaffold442_contigs=14~65177-65663 Prim-Pol PF09250.6 g238.t1 - 0.024 14.5 0 0.035 14 0 1.2 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal | Ref_seq=scaffold14_contigs=6, transcript_loc=scaffold14_contigs=6:27197-27865 Augustus predicted protein sequence Tomato scaffold14_contigs=6~27197-27865 RVT_3 PF13456.1 g79841.t1 - 0.00079 19.1 0.1 0.001 18.7 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:253936-254217 Augustus predicted protein sequence Tomato scaffold2702_contigs=9~253936-254217 Roughex PF06020.6 g56245.t1 - 0.0084 14.8 0.2 1.5 7.3 0 2.2 1 1 1 2 2 2 2 Drosophila roughex protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:50968-53021 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~50968-53021 DUF4275 PF14101.1 g30852.t1 - 0.084 12.9 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4275) | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:34653-37239 Augustus predicted protein sequence Tomato scaffold1048_contigs=2~34653-37239 Bombolitin PF08096.6 g904.t1 - 0.016 15.2 0 7.7 6.8 0 2.3 2 0 0 2 2 2 0 Bombolitin family | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:41547-42212 Augustus predicted protein sequence Tomato scaffold180_contigs=3~41547-42212 A_amylase_inhib PF01356.14 g36077.t1 - 0.53 10.1 4.2 2.1 8.2 1.7 2.1 2 0 0 2 2 2 0 Alpha amylase inhibitor | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:272878-273320 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~272878-273320 Phage_endo_I PF05367.6 g11045.t1 - 0.17 11.2 0 0.31 10.4 0 1.3 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:62061-68857 Augustus predicted protein sequence Tomato scaffold512_contigs=2~62061-68857 DUF1869 PF08956.5 g47722.t1 - 0.0092 15.5 0 0.016 14.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1869) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:268497-268805 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~268497-268805 Herpes_DNAp_acc PF04929.7 g72656.t1 - 5.1 5.9 9.7 5.4 5.8 6.7 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:149816-150106 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~149816-150106 Blo-t-5 PF11642.3 g36603.t1 - 0.0091 15.7 7 0.065 12.9 1 2.2 1 1 1 2 2 2 2 Mite allergen Blo t 5 | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:73758-75152 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~73758-75152 DUF1344 PF07076.6 g67178.t1 - 0.051 13.1 5 6.5 6.3 0.1 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF1344) | Ref_seq=scaffold2176_contigs=19, transcript_loc=scaffold2176_contigs=19:79244-79459 Augustus predicted protein sequence Tomato scaffold2176_contigs=19~79244-79459 Staph_haemo PF05480.6 g86623.t1 - 0.1 12.3 0.5 0.22 11.2 0.4 1.5 1 0 0 1 1 1 0 Staphylococcus haemolytic protein | Ref_seq=scaffold2877_contigs=1, transcript_loc=scaffold2877_contigs=1:32641-33190 Augustus predicted protein sequence Tomato scaffold2877_contigs=1~32641-33190 DUF2216 PF10226.4 g57498.t1 - 0.15 11.5 0.9 0.23 10.9 0.4 1.4 1 1 0 1 1 1 0 Uncharacterized conserved proteins (DUF2216) | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:296905-297276 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~296905-297276 Ribosomal_L28 PF00830.14 g76666.t1 - 0.049 13.4 0 9 6.2 0 2.2 2 0 0 2 2 2 0 Ribosomal L28 family | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:257119-257948 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~257119-257948 KduI PF04962.7 g3706.t1 - 0.13 11.3 0.1 0.18 10.8 0 1.3 1 0 0 1 1 1 0 KduI/IolB family | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:216191-217081 Augustus predicted protein sequence Tomato scaffold280_contigs=12~216191-217081 ATHILA PF03078.10 g48396.t1 - 0.11 11 0 2.7 6.4 0 2 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:225742-226215 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~225742-226215 Phage_holin_3 PF05106.7 g60001.t1 - 0.02 14.9 0.3 1.5 8.8 0 2.3 2 0 0 2 2 2 0 Phage holin family (Lysis protein S) | Ref_seq=scaffold1938_contigs=9, transcript_loc=scaffold1938_contigs=9:196350-201837 Augustus predicted protein sequence Tomato scaffold1938_contigs=9~196350-201837 zf-CCHC PF00098.18 g22349.t1 - 0.000068 22.5 1.7 0.00011 21.9 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold826_contigs=19, transcript_loc=scaffold826_contigs=19:32134-32811 Augustus predicted protein sequence Tomato scaffold826_contigs=19~32134-32811 DUF1075 PF06388.6 g57658.t1 - 0.1 12.2 2 0.31 10.6 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:180916-181431 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~180916-181431 HrpB7 PF09486.5 g53673.t1 - 0.0011 18.9 0.8 0.0011 18.9 0.6 1.8 2 0 0 2 2 2 1 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1700_contigs=3, transcript_loc=scaffold1700_contigs=3:10494-12179 Augustus predicted protein sequence Tomato scaffold1700_contigs=3~10494-12179 RAI1 PF08652.6 g17511.t1 - 0.021 14.5 2.6 3.3 7.5 0 2.5 2 0 0 2 2 2 0 RAI1 like PD-(D/E)XK nuclease | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:256249-256767 Augustus predicted protein sequence Tomato scaffold707_contigs=5~256249-256767 Spore_coat_CotO PF14153.1 g13484.t1 - 0.0016 17.9 0.9 0.002 17.6 0.6 1.2 1 0 0 1 1 1 1 Spore coat protein CotO | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:54981-62802 Augustus predicted protein sequence Tomato scaffold576_contigs=15~54981-62802 DUF3154 PF11351.3 g21881.t1 - 0.092 12.4 0 0.17 11.6 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:157678-161404 Augustus predicted protein sequence Tomato scaffold817_contigs=11~157678-161404 Rad21_Rec8 PF04824.11 g74277.t1 - 0.63 9.2 0 0.63 9.2 0 2.5 3 0 0 3 3 3 0 Conserved region of Rad21 / Rec8 like protein | Ref_seq=scaffold2527_contigs=1, transcript_loc=scaffold2527_contigs=1:28277-28762 Augustus predicted protein sequence Tomato scaffold2527_contigs=1~28277-28762 DUF2781 PF10914.3 g47935.t1 - 0.02 14.6 0.4 0.024 14.4 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2781) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:113731-114292 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~113731-114292 ADIP PF11559.3 g71770.t1 - 0.018 14.9 2.9 0.018 14.9 2 1.4 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:196952-197413 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~196952-197413 zf-CCHC PF00098.18 g77821.t1 - 0.0012 18.6 0.4 0.0012 18.6 0.2 1.8 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:511116-511469 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~511116-511469 Minor_capsid_3 PF12691.2 g74462.t1 - 0.000000027 33.5 0 3.2 7.4 0 6.5 2 1 5 7 7 7 4 Minor capsid protein from bacteriophage | Ref_seq=scaffold2544_contigs=13, transcript_loc=scaffold2544_contigs=13:1-5049 Augustus predicted protein sequence Tomato scaffold2544_contigs=13~1-5049 DUF1985 PF09331.6 g70313.t1 - 0.000000039 33.2 0 0.000000039 33.2 0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:450715-451841 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~450715-451841 Troponin-I_N PF11636.3 g59722.t1 - 3 7.5 5.6 1.1 9 0.4 2.4 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:106505-107200 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~106505-107200 Ribosomal_L34 PF00468.12 g57818.t1 - 0.2 11.3 3.4 0.39 10.4 2.3 1.5 1 0 0 1 1 1 0 Ribosomal protein L34 | Ref_seq=scaffold1839_contigs=2, transcript_loc=scaffold1839_contigs=2:622-1260 Augustus predicted protein sequence Tomato scaffold1839_contigs=2~622-1260 PAGK PF15284.1 g87607.t1 - 0.051 13.3 0.8 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Phage-encoded virulence factor | Ref_seq=scaffold3412_contigs=1, transcript_loc=scaffold3412_contigs=1:1888-2518 Augustus predicted protein sequence Tomato scaffold3412_contigs=1~1888-2518 Choline_kin_N PF04428.9 g6238.t1 - 0.091 12.2 0.1 4.4 6.8 0 2.5 2 0 0 2 2 2 0 Choline kinase N terminus | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:104384-105675 Augustus predicted protein sequence Tomato scaffold355_contigs=5~104384-105675 RVT_2 PF07727.9 g27857.t1 - 0.14 11 0 0.23 10.4 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:41751-47893 Augustus predicted protein sequence Tomato scaffold985_contigs=1~41751-47893 FYDLN_acid PF09538.5 g87242.t1 - 0.41 11.2 16.8 1.7 9.2 3.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:198-668 Augustus predicted protein sequence Tomato scaffold2972_contigs=1~198-668 2C_adapt PF08793.5 g68311.t1 - 0.076 12.9 1.5 0.15 11.9 1 1.4 1 0 0 1 1 1 0 2-cysteine adaptor domain | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:1-1237 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~1-1237 PI3K_1B_p101 PF10486.4 g10994.t1 - 0.019 12.5 3.9 0.021 12.4 2.7 1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:186729-187034 Augustus predicted protein sequence Tomato scaffold510_contigs=5~186729-187034 DUF148 PF02520.12 g6391.t1 - 0.00067 19.4 3.4 0.0013 18.5 2.4 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF148 | Ref_seq=scaffold366_contigs=3, transcript_loc=scaffold366_contigs=3:79372-79845 Augustus predicted protein sequence Tomato scaffold366_contigs=3~79372-79845 SUKH-4 PF14435.1 g28172.t1 - 0.053 13.2 0.6 0.063 12.9 0.4 1.1 1 0 0 1 1 1 0 SUKH-4 immunity protein | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:209039-209314 Augustus predicted protein sequence Tomato scaffold992_contigs=3~209039-209314 Serglycin PF04360.7 g53859.t1 - 0.3 10.7 2.4 0.27 10.9 1.7 1.2 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold1705_contigs=3, transcript_loc=scaffold1705_contigs=3:1-106 Augustus predicted protein sequence Tomato scaffold1705_contigs=3~1-106 RNA_pol_Rpc4 PF05132.9 g13487.t1 - 1.7 8.6 4.1 1.7 8.6 2.8 1 1 0 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:66808-67011 Augustus predicted protein sequence Tomato scaffold576_contigs=15~66808-67011 Spore_YhaL PF14147.1 g77059.t1 - 0.079 12.4 0.3 0.2 11.1 0.2 1.8 1 0 0 1 1 1 0 Sporulation protein YhaL | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:100658-101178 Augustus predicted protein sequence Tomato scaffold2646_contigs=41~100658-101178 Cwf_Cwc_15 PF04889.7 g76586.t1 - 0.021 14.5 10.8 0.029 14 7.5 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:186427-188270 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~186427-188270 NIF3 PF01784.13 g15701.t1 - 0.086 12.3 0 0.12 11.9 0 1.2 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:87380-88326 Augustus predicted protein sequence Tomato scaffold640_contigs=3~87380-88326 zf-CCHC PF00098.18 g52573.t1 - 0.0015 18.3 0.5 0.0027 17.5 0.3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1640_contigs=5, transcript_loc=scaffold1640_contigs=5:20110-20424 Augustus predicted protein sequence Tomato scaffold1640_contigs=5~20110-20424 DUF2543 PF10820.3 g39959.t1 - 0.077 13 0 0.088 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) | Ref_seq=scaffold1284_contigs=5, transcript_loc=scaffold1284_contigs=5:175717-175959 Augustus predicted protein sequence Tomato scaffold1284_contigs=5~175717-175959 MitMem_reg PF13012.1 g10502.t1 - 0.066 13.2 0 0.09 12.8 0 1.2 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:449700-450092 Augustus predicted protein sequence Tomato scaffold498_contigs=12~449700-450092 DUF3087 PF11286.3 g14552.t1 - 0.01 15 0.1 0.013 14.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:85105-85542 Augustus predicted protein sequence Tomato scaffold597_contigs=5~85105-85542 RVT_3 PF13456.1 g70276.t1 - 0.00002 24.2 0 0.000037 23.4 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:300334-303808 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~300334-303808 RNase_H2-Ydr279 PF09468.5 g59047.t1 - 0.099 11.8 3.3 0.11 11.6 2.3 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:74994-75368 Augustus predicted protein sequence Tomato scaffold1892_contigs=29~74994-75368 Paf1 PF03985.8 g67009.t1 - 1 8 8.4 1.1 7.8 5.8 1.1 1 0 0 1 1 1 0 Paf1 | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:486738-487103 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~486738-487103 Tropomyosin_1 PF12718.2 g78648.t1 - 0.015 15.1 0.2 0.021 14.6 0.2 1.2 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:129303-129626 Augustus predicted protein sequence Tomato scaffold2673_contigs=12~129303-129626 HALZ PF02183.13 g45986.t1 - 0.0071 16 6.4 0.37 10.5 0.9 2.5 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:9309-9752 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~9309-9752 TCR PF03638.10 g75573.t1 - 0.065 13.1 0.7 0.1 12.4 0.5 1.2 1 0 0 1 1 1 0 Tesmin/TSO1-like CXC domain, cysteine-rich domain | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:108638-110054 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~108638-110054 VSG_B PF13206.1 g58982.t1 - 0.013 14.6 0.1 0.013 14.6 0.1 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:84679-84963 Augustus predicted protein sequence Tomato scaffold1886_contigs=2~84679-84963 Herpes_gE PF02480.11 g41304.t1 - 0.00078 17.8 0.1 0.00088 17.6 0.1 1 1 0 0 1 1 1 1 Alphaherpesvirus glycoprotein E | Ref_seq=scaffold1329_contigs=11, transcript_loc=scaffold1329_contigs=11:204825-205121 Augustus predicted protein sequence Tomato scaffold1329_contigs=11~204825-205121 zf-like PF04071.7 g40634.t1 - 0.019 14.6 0.2 0.024 14.3 0.1 1.2 1 0 0 1 1 1 0 Cysteine-rich small domain | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:46550-46792 Augustus predicted protein sequence Tomato scaffold1304_contigs=4~46550-46792 TFR_dimer PF04253.10 g17277.t1 - 0.058 12.9 0 0.067 12.7 0 1.1 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain | Ref_seq=scaffold702_contigs=3, transcript_loc=scaffold702_contigs=3:51042-51263 Augustus predicted protein sequence Tomato scaffold702_contigs=3~51042-51263 IL6Ra-bind PF09240.5 g81309.t1 - 0.066 13.3 0.1 0.092 12.9 0.1 1.2 1 0 0 1 1 1 0 Interleukin-6 receptor alpha chain, binding | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:297739-298104 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~297739-298104 IFP_35_N PF07334.8 g64845.t1 - 0.029 14.3 0.8 0.07 13.1 0.5 1.6 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:114179-114556 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~114179-114556 K_channel_TID PF07941.6 g66099.t1 - 0.082 13.1 0.2 0.082 13.1 0.1 2.4 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain | Ref_seq=scaffold2150_contigs=4, transcript_loc=scaffold2150_contigs=4:4816-5316 Augustus predicted protein sequence Tomato scaffold2150_contigs=4~4816-5316 TFIIA PF03153.8 g48512.t1 - 0.013 15.4 8.7 0.013 15.3 6.1 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:140487-142534 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~140487-142534 PriCT_1 PF08708.6 g16384.t1 - 0.083 12.7 0 0.12 12.1 0 1.2 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:69275-74396 Augustus predicted protein sequence Tomato scaffold669_contigs=3~69275-74396 EXS PF03124.9 g31554.t1 - 0.043 12.8 0.2 0.056 12.4 0.1 1.1 1 0 0 1 1 1 0 EXS family | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:178183-180292 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~178183-180292 HC2 PF07382.6 g12606.t1 - 0.13 12 8.5 0.16 11.8 5.9 1.1 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:381541-381762 Augustus predicted protein sequence Tomato scaffold556_contigs=11~381541-381762 Pox_A_type_inc PF04508.7 g6278.t1 - 0.46 10.4 4.4 9.7 6.2 0.1 3.3 2 1 1 3 3 3 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:122408-125827 Augustus predicted protein sequence Tomato scaffold357_contigs=6~122408-125827 UBN2 PF14223.1 g75471.t1 - 0.00056 19.6 0 0.00097 18.9 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:49235-52156 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~49235-52156 Daxx PF03344.10 g79892.t1 - 0.021 13.3 8.5 0.022 13.2 5.9 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:162935-164652 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~162935-164652 ATHILA PF03078.10 g18003.t1 - 5.8E-012 44.9 0.4 4.8E-010 38.6 0 2 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:159686-160495 Augustus predicted protein sequence Tomato scaffold720_contigs=9~159686-160495 DUF4055 PF13264.1 g25698.t1 - 0.014 15.4 0.1 0.019 15 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:252075-252805 Augustus predicted protein sequence Tomato scaffold930_contigs=4~252075-252805 DUF2256 PF10013.4 g22317.t1 - 0.061 13 0.4 0.089 12.5 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:498126-498332 Augustus predicted protein sequence Tomato scaffold825_contigs=10~498126-498332 B5 PF03484.10 g52088.t1 - 0.089 12.6 0.2 22 4.9 0 2.6 3 0 0 3 3 3 0 tRNA synthetase B5 domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:2701-8140 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~2701-8140 G3P_antiterm PF04309.7 g28696.t1 - 0.0029 16.6 0 0.0047 15.9 0 1.3 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:7481-10669 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~7481-10669 BBIP10 PF14777.1 g51824.t1 - 0.87 9 3.9 15 5 0 2.3 2 0 0 2 2 2 0 Cilia BBSome complex subunit 10 | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:58398-59471 Augustus predicted protein sequence Tomato scaffold1624_contigs=2~58398-59471 Retrotrans_gag PF03732.12 g1838.t1 - 0.053 13.5 0.4 0.25 11.4 0 2 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:219170-223548 Augustus predicted protein sequence Tomato scaffold217_contigs=3~219170-223548 Mating_C PF12737.2 g66582.t1 - 0.074 11.9 0.4 0.39 9.5 0.2 1.8 1 1 1 2 2 2 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:135142-135599 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~135142-135599 GMC_oxred_C PF05199.8 g17643.t1 - 0.0033 17.7 0.6 0.0045 17.2 0.4 1.1 1 0 0 1 1 1 1 GMC oxidoreductase | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:17491-17907 Augustus predicted protein sequence Tomato scaffold713_contigs=10~17491-17907 Toxin_60 PF15607.1 g59645.t1 - 0.18 11.8 3.6 7.8 6.5 0.2 2.3 2 0 0 2 2 2 0 Putative toxin 60 | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:21134-22044 Augustus predicted protein sequence Tomato scaffold1930_contigs=25~21134-22044 BNIP3 PF06553.7 g64040.t1 - 0.4 10 1.9 9.3 5.5 1.3 2.2 1 1 0 1 1 1 0 BNIP3 | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:95896-96240 Augustus predicted protein sequence Tomato scaffold2050_contigs=3~95896-96240 SelR PF01641.13 g34434.t1 - 0.11 12.1 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 SelR domain | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:88234-88729 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~88234-88729 BEX PF04538.7 g51321.t1 - 0.4 10.9 11.7 3.3 7.9 8.1 2.2 1 1 0 1 1 1 0 Brain expressed X-linked like family | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:78959-79770 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~78959-79770 BLOC1_2 PF10046.4 g19507.t1 - 0.053 13.6 0.3 0.053 13.6 0.2 2.3 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:159339-162626 Augustus predicted protein sequence Tomato scaffold752_contigs=5~159339-162626 Selenoprotein_S PF06936.6 g39826.t1 - 0.68 9.4 9 1.2 8.6 0.1 2.3 2 0 0 2 2 2 0 Selenoprotein S (SelS) | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:5598-8032 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~5598-8032 TraV PF09676.5 g56391.t1 - 1.4 9.6 6.8 0.68 10.6 3.1 1.8 1 1 1 2 2 2 0 Type IV conjugative transfer system lipoprotein (TraV) | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:159768-160898 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~159768-160898 DUF4455 PF14643.1 g33614.t1 - 0.0029 16.3 2 0.0035 16 1.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:295173-296895 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~295173-296895 Telomerase_RBD PF12009.3 g45160.t1 - 0.15 11.9 0 0.16 11.8 0 1 1 0 0 1 1 1 0 Telomerase ribonucleoprotein complex - RNA binding domain | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:206634-206876 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~206634-206876 DUF4319 PF14203.1 g13772.t1 - 0.089 12.3 0 0.14 11.7 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:140262-140504 Augustus predicted protein sequence Tomato scaffold582_contigs=8~140262-140504 WEMBL PF05701.6 g14464.t1 - 0.0024 16.4 6 0.0025 16.3 4.2 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:492845-493381 Augustus predicted protein sequence Tomato scaffold594_contigs=19~492845-493381 Rhabdo_glycop PF00974.13 g28925.t1 - 0.031 12.4 0.8 0.04 12.1 0.6 1.1 1 0 0 1 1 1 0 Rhabdovirus spike glycoprotein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:842766-843362 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~842766-843362 UBN2_3 PF14244.1 g84332.t1 - 0.044 13.3 0 0.074 12.5 0 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:83540-86134 Augustus predicted protein sequence Tomato scaffold2767_contigs=1~83540-86134 Toxin_R_bind_C PF07951.7 g38065.t1 - 0.0018 17.9 0.2 0.0021 17.7 0.1 1.1 1 0 0 1 1 1 1 Clostridium neurotoxin, C-terminal receptor binding | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:115435-116040 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~115435-116040 VGCC_beta4Aa_N PF12052.3 g12311.t1 - 0.014 15.2 2.3 0.026 14.3 1.6 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:7403-14626 Augustus predicted protein sequence Tomato scaffold547_contigs=4~7403-14626 OEP PF02321.13 g49609.t1 - 0.091 12.3 1.6 0.11 12.1 1.1 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:149629-149940 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~149629-149940 ATHILA PF03078.10 g45268.t1 - 0.00018 20.2 0 0.00022 19.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:576186-577914 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~576186-577914 PAC2 PF09754.4 g86440.t1 - 0.11 12.2 0 0.15 11.9 0 1.1 1 0 0 1 1 1 0 PAC2 family | Ref_seq=scaffold2862_contigs=1, transcript_loc=scaffold2862_contigs=1:1203-3365 Augustus predicted protein sequence Tomato scaffold2862_contigs=1~1203-3365 TC1 PF15063.1 g34063.t1 - 0.028 13.9 0 0.069 12.6 0 1.6 1 0 0 1 1 1 0 Thyroid cancer protein 1 | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:263735-265265 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~263735-265265 Speriolin_N PF15058.1 g54087.t1 - 0.015 15.1 0.3 0.02 14.7 0.2 1.3 1 0 0 1 1 1 0 Speriolin N terminus | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:26175-26711 Augustus predicted protein sequence Tomato scaffold1715_contigs=5~26175-26711 RNA_pol_Rpb4 PF03874.11 g37579.t1 - 0.046 13.7 0.3 0.066 13.2 0.2 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb4 | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:245148-247194 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~245148-247194 TC1 PF15063.1 g26881.t1 - 0.015 14.8 0 0.035 13.6 0 1.6 1 0 0 1 1 1 0 Thyroid cancer protein 1 | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:291909-292544 Augustus predicted protein sequence Tomato scaffold961_contigs=8~291909-292544 ETS_PEA3_N PF04621.8 g10042.t1 - 0.088 12 0.3 0.11 11.6 0.2 1.2 1 0 0 1 1 1 0 PEA3 subfamily ETS-domain transcription factor N terminal domain | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:285540-286148 Augustus predicted protein sequence Tomato scaffold481_contigs=9~285540-286148 DUF4201 PF13870.1 g68978.t1 - 0.011 15.2 9.7 0.02 14.3 2.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:75514-76197 Augustus predicted protein sequence Tomato scaffold2237_contigs=22~75514-76197 Sulfotransfer_3 PF13469.1 g53302.t1 - 0.07 14 0 9.1 7.2 0 2.3 2 0 0 2 2 2 0 Sulfotransferase family | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:104668-107894 Augustus predicted protein sequence Tomato scaffold1689_contigs=11~104668-107894 Endonuc-BsobI PF09194.5 g23417.t1 - 0.15 10.9 0 0.17 10.8 0 1.1 1 0 0 1 1 1 0 Restriction endonuclease BsobI | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:149448-150262 Augustus predicted protein sequence Tomato scaffold859_contigs=6~149448-150262 DUF2625 PF10946.3 g30705.t1 - 0.039 12.8 0 0.058 12.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF2625 | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:111324-113520 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~111324-113520 Totivirus_coat PF05518.6 g73167.t1 - 5.7 4.6 5.9 5.8 4.6 4.1 1.1 1 0 0 1 1 1 0 Totivirus coat protein | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:795044-795647 Augustus predicted protein sequence Tomato scaffold2444_contigs=49~795044-795647 Mito_fiss_reg PF05308.6 g56446.t1 - 0.25 10.6 1.8 0.34 10.2 1.2 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1805_contigs=6, transcript_loc=scaffold1805_contigs=6:22975-30125 Augustus predicted protein sequence Tomato scaffold1805_contigs=6~22975-30125 CsoS2_M PF12288.3 g67848.t1 - 0.083 12 2.9 0.13 11.4 2 1.3 1 0 0 1 1 1 0 Carboxysome shell peptide mid-region | Ref_seq=scaffold2198_contigs=9, transcript_loc=scaffold2198_contigs=9:82795-83226 Augustus predicted protein sequence Tomato scaffold2198_contigs=9~82795-83226 DUF2615 PF11027.3 g38250.t1 - 0.14 12.1 0 0.16 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:733822-734100 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~733822-734100 Transposase_28 PF04195.7 g66982.t1 - 0.011 14.9 0 0.014 14.6 0 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:360357-360695 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~360357-360695 DUF349 PF03993.7 g63829.t1 - 0.1 12.7 4.9 0.23 11.6 3.5 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF349) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:315763-316724 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~315763-316724 Vfa1 PF08432.5 g38718.t1 - 0.0028 17.7 4.1 0.0033 17.4 2.8 1.2 1 0 0 1 1 1 1 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:116099-119076 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~116099-119076 Baculo_PEP_C PF04513.7 g63869.t1 - 0.087 12.6 0 0.14 12 0 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:44961-47695 Augustus predicted protein sequence Tomato scaffold2046_contigs=5~44961-47695 ATP_bind_1 PF03029.12 g55039.t1 - 0.039 13.4 0.1 0.046 13.2 0.1 1.1 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:59315-60142 Augustus predicted protein sequence Tomato scaffold1735_contigs=2~59315-60142 FRG2 PF15315.1 g61235.t1 - 5.7 6.8 7.3 6.4 6.7 0 2.4 2 1 1 3 3 3 0 Facioscapulohumeral muscular dystrophy candidate 2 | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:1465804-1466241 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~1465804-1466241 RhoGEF PF00621.15 g48947.t1 - 0.0037 17.1 0 0.0053 16.6 0 1.2 1 0 0 1 1 1 1 RhoGEF domain | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:385627-386113 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~385627-386113 GAS PF13851.1 g77641.t1 - 0.029 13.5 0.1 0.033 13.3 0.1 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:304075-304365 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~304075-304365 Carboxyl_trans PF01039.17 g8133.t1 - 0.13 10.5 0.1 0.15 10.3 0.1 1 1 0 0 1 1 1 0 Carboxyl transferase domain | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:123804-124046 Augustus predicted protein sequence Tomato scaffold421_contigs=12~123804-124046 Med1 PF10744.4 g55626.t1 - 0.011 14.5 0.7 0.011 14.5 0.5 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription subunit 1 | Ref_seq=scaffold1758_contigs=1, transcript_loc=scaffold1758_contigs=1:2380-4243 Augustus predicted protein sequence Tomato scaffold1758_contigs=1~2380-4243 eIF-3c_N PF05470.7 g59686.t1 - 0.74 7.8 3.6 0.77 7.7 2.5 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus | Ref_seq=scaffold1932_contigs=3, transcript_loc=scaffold1932_contigs=3:15751-16232 Augustus predicted protein sequence Tomato scaffold1932_contigs=3~15751-16232 COP23 PF14218.1 g31198.t1 - 0.11 12 0 0.43 10.1 0 1.8 2 0 0 2 2 2 0 Circadian oscillating protein COP23 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:13000-13368 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~13000-13368 GP41 PF00517.12 g50227.t1 - 0.0056 16.2 0.5 0.0061 16.1 0.4 1.1 1 0 0 1 1 1 1 Retroviral envelope protein | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:13388-13726 Augustus predicted protein sequence Tomato scaffold1561_contigs=2~13388-13726 RRS1 PF04939.7 g38688.t1 - 0.037 13.4 0.6 0.065 12.7 0.4 1.3 1 0 0 1 1 1 0 Ribosome biogenesis regulatory protein (RRS1) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:35195-39129 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~35195-39129 UTP15_C PF09384.5 g68934.t1 - 0.001 18.7 0.1 0.12 12 0 2.1 2 0 0 2 2 2 2 UTP15 C terminal | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:121901-122531 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~121901-122531 DUF4290 PF14123.1 g30080.t1 - 0.11 11.6 0.3 0.19 10.9 0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:469787-470083 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~469787-470083 DUF3657 PF12394.3 g5157.t1 - 0.00033 20.6 0 0.97 9.5 0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF3657) | Ref_seq=scaffold316_contigs=3, transcript_loc=scaffold316_contigs=3:1321-3553 Augustus predicted protein sequence Tomato scaffold316_contigs=3~1321-3553 DUF1177 PF06675.6 g44473.t1 - 0.022 13.3 1.8 0.83 8.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1177) | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:21743-28207 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~21743-28207 Daxx PF03344.10 g8302.t1 - 0.54 8.6 6.3 0.69 8.3 4.4 1.2 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:318083-319985 Augustus predicted protein sequence Tomato scaffold423_contigs=9~318083-319985 Arch_fla_DE PF04659.8 g78436.t1 - 0.023 14.4 0 0.032 14 0 1.2 1 0 0 1 1 1 0 Archaeal flagella protein | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:245325-245969 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~245325-245969 CaM-KIIN PF15170.1 g54207.t1 - 0.11 12.4 3.1 4.6 7.3 0.1 3.4 1 1 3 4 4 4 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:17013-17291 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~17013-17291 DBD_Tnp_Mut PF03108.10 g29849.t1 - 0.00000055 29 0 0.00000098 28.2 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:64700-65839 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~64700-65839 Aa_trans PF01490.13 g22257.t1 - 0.13 10.7 0 0.16 10.4 0 1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:223573-223863 Augustus predicted protein sequence Tomato scaffold825_contigs=10~223573-223863 DUF1985 PF09331.6 g39368.t1 - 0.000014 24.9 0.1 0.000032 23.7 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:149868-153394 Augustus predicted protein sequence Tomato scaffold1269_contigs=10~149868-153394 NSs PF11073.3 g44471.t1 - 0.065 12.4 0.1 0.11 11.7 0 1.3 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:16325-20608 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~16325-20608 RXT2_N PF08595.6 g72212.t1 - 0.17 11.7 6.5 0.35 10.6 4.5 1.4 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:657919-659003 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~657919-659003 ATHILA PF03078.10 g15026.t1 - 0.0015 17.2 0 0.002 16.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:3263-4408 Augustus predicted protein sequence Tomato scaffold617_contigs=9~3263-4408 HATPase_c_3 PF13589.1 g66983.t1 - 0.086 12.4 0.2 0.23 11.1 0.1 1.7 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:360851-361138 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~360851-361138 Rotamase_2 PF13145.1 g24571.t1 - 0.089 13.4 1 0.17 12.4 0.1 1.8 2 0 0 2 2 2 0 PPIC-type PPIASE domain | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:83623-90823 Augustus predicted protein sequence Tomato scaffold888_contigs=4~83623-90823 RP-C PF03428.8 g51238.t1 - 0.0021 17.5 0.4 0.0052 16.2 0.1 1.7 1 1 1 2 2 2 1 Replication protein C N-terminal domain | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:147599-151218 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~147599-151218 Zip PF02535.17 g45757.t1 - 1.6 7.6 3.6 1.8 7.4 2.5 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold1460_contigs=7, transcript_loc=scaffold1460_contigs=7:108486-109520 Augustus predicted protein sequence Tomato scaffold1460_contigs=7~108486-109520 KLRAQ PF10205.4 g30500.t1 - 0.62 10.1 16.5 0.21 11.6 3.3 2.9 3 0 0 3 3 3 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:77854-78956 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~77854-78956 DUF4387 PF14330.1 g41666.t1 - 0.14 12.4 0 0.18 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:134255-134536 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~134255-134536 Erp_C PF06780.6 g10714.t1 - 0.14 12 0.1 0.18 11.6 0 1.1 1 0 0 1 1 1 0 Erp protein C-terminus | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:339418-339750 Augustus predicted protein sequence Tomato scaffold503_contigs=7~339418-339750 Herpes_US12 PF05363.7 g44475.t1 - 0.044 14.2 0.1 0.17 12.4 0 1.9 1 1 1 2 2 2 0 Herpesvirus US12 family | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:33401-34009 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~33401-34009 Mating_C PF12737.2 g56976.t1 - 0.063 12.1 3.3 0.066 12.1 2.3 1.1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:224138-224491 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~224138-224491 ATHILA PF03078.10 g11417.t1 - 0.0000037 25.8 0 0.0000043 25.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:15826-16191 Augustus predicted protein sequence Tomato scaffold524_contigs=3~15826-16191 YL1 PF05764.8 g85369.t1 - 0.99 8.9 6.5 1.2 8.7 4.5 1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:87341-87706 Augustus predicted protein sequence Tomato scaffold2801_contigs=1~87341-87706 Ribonuc_2-5A PF06479.7 g43205.t1 - 0.011 15.5 0.4 0.52 10.1 0.1 2.3 2 0 0 2 2 2 0 Ribonuclease 2-5A | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:95380-96372 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~95380-96372 RepB-RCR_reg PF10723.4 g45844.t1 - 0.065 12.9 2.5 0.11 12.2 0.2 1.9 2 0 0 2 2 2 0 Replication regulatory protein RepB | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:247300-247629 Augustus predicted protein sequence Tomato scaffold1464_contigs=11~247300-247629 NAM-associated PF14303.1 g81153.t1 - 0.00017 21.9 8.4 0.00019 21.8 5.8 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2723_contigs=6, transcript_loc=scaffold2723_contigs=6:165953-166345 Augustus predicted protein sequence Tomato scaffold2723_contigs=6~165953-166345 CTC1 PF15489.1 g46780.t1 - 0.029 11.7 0.6 0.034 11.5 0.4 1 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:4998-6005 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~4998-6005 DUF972 PF06156.8 g49518.t1 - 3.7 7.9 5.6 13 6.1 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1541_contigs=9, transcript_loc=scaffold1541_contigs=9:28703-29170 Augustus predicted protein sequence Tomato scaffold1541_contigs=9~28703-29170 GlutR_dimer PF00745.15 g34193.t1 - 0.18 11.7 1.6 0.39 10.6 0.1 2.1 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:10150-10655 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~10150-10655 DUF3525 PF12039.3 g65218.t1 - 0.07 11.6 1.1 0.1 11.1 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:356620-357973 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~356620-357973 CaATP_NAI PF12515.3 g3511.t1 - 0.29 10.6 5.8 0.1 12.1 2.2 1.6 2 0 0 2 2 2 0 Ca2+-ATPase N terminal autoinhibitory domain | Ref_seq=scaffold274_contigs=4, transcript_loc=scaffold274_contigs=4:155639-158332 Augustus predicted protein sequence Tomato scaffold274_contigs=4~155639-158332 Auxin_BP PF02041.11 g58292.t1 - 0.008 15.6 0 1.1 8.7 0 2.1 2 0 0 2 2 2 2 Auxin binding protein | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:130999-132369 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~130999-132369 NAD_binding_1 PF00175.16 g7624.t1 - 0.007 16.9 0 0.0096 16.4 0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:387038-387503 Augustus predicted protein sequence Tomato scaffold404_contigs=9~387038-387503 DUF3481 PF11980.3 g4701.t1 - 0.65 9.8 3.3 0.61 9.9 1.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3481) | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:218239-218878 Augustus predicted protein sequence Tomato scaffold306_contigs=7~218239-218878 CCDC-167 PF15188.1 g81354.t1 - 0.1 12.5 1.2 0.18 11.8 0.8 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:36930-37536 Augustus predicted protein sequence Tomato scaffold2727_contigs=1~36930-37536 WRC PF08879.5 g57713.t1 - 0.014 15 1.1 0.026 14.1 0.8 1.4 1 0 0 1 1 1 0 WRC | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:369011-369446 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~369011-369446 FH2 PF02181.18 g78494.t1 - 0.0066 15.3 0.2 0.0084 15 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:124372-124806 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~124372-124806 Xpo1 PF08389.7 g81304.t1 - 0.0003 20.7 0.5 0.00046 20.1 0.3 1.3 1 0 0 1 1 1 1 Exportin 1-like protein | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:277901-278550 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~277901-278550 DUF2742 PF10888.3 g72440.t1 - 0.12 12.2 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:58934-59269 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~58934-59269 Cut8_N PF14482.1 g17878.t1 - 0.075 13 0.1 0.088 12.8 0 1.2 1 0 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:213187-213987 Augustus predicted protein sequence Tomato scaffold715_contigs=2~213187-213987 bcl-2I13 PF12201.3 g66445.t1 - 0.16 11.4 0.2 1.3 8.5 0 2.3 2 1 1 3 3 3 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:132512-133425 Augustus predicted protein sequence Tomato scaffold2162_contigs=10~132512-133425 PIRT PF15099.1 g5639.t1 - 0.077 12.2 0.4 0.23 10.7 0 1.7 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:241710-241943 Augustus predicted protein sequence Tomato scaffold334_contigs=13~241710-241943 DUF4455 PF14643.1 g77657.t1 - 0.0048 15.5 0 0.0059 15.2 0 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:343197-343965 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~343197-343965 EMP70 PF02990.11 g47419.t1 - 0.1 11 0 0.11 10.8 0 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:450301-450921 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~450301-450921 Lsr2 PF11774.3 g21080.t1 - 0.1 12.5 0.4 0.12 12.3 0.3 1.2 1 0 0 1 1 1 0 Lsr2 | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:226924-227181 Augustus predicted protein sequence Tomato scaffold792_contigs=3~226924-227181 Trefoil PF00088.13 g26416.t1 - 0.18 11.4 2.4 0.15 11.7 0.8 1.4 1 1 0 1 1 1 0 Trefoil (P-type) domain | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:480054-480359 Augustus predicted protein sequence Tomato scaffold948_contigs=6~480054-480359 DUF4446 PF14584.1 g52223.t1 - 0.068 12.9 0.2 0.094 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:173260-173571 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~173260-173571 NPDC1 PF06809.6 g28546.t1 - 0.067 11.9 1 0.1 11.4 0.7 1.3 1 0 0 1 1 1 0 Neural proliferation differentiation control-1 protein (NPDC1) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:325246-327306 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~325246-327306 MMS1_N PF10433.4 g45967.t1 - 0.013 13.7 0.1 0.017 13.3 0.1 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:403812-404351 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~403812-404351 DUF3515 PF12028.3 g84483.t1 - 0.02 14.1 0.1 0.03 13.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3515) | Ref_seq=scaffold2771_contigs=1, transcript_loc=scaffold2771_contigs=1:96861-97142 Augustus predicted protein sequence Tomato scaffold2771_contigs=1~96861-97142 NCA2 PF08637.5 g67514.t1 - 0.067 12 0.1 0.076 11.8 0 1.1 1 0 0 1 1 1 0 ATP synthase regulation protein NCA2 | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:142003-142218 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~142003-142218 IFP_35_N PF07334.8 g77872.t1 - 0.042 13.8 0.2 0.13 12.2 0 2 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:667460-668678 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~667460-668678 ATHILA PF03078.10 g72371.t1 - 0.0000016 26.9 0 0.0000018 26.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1227945-1228229 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1227945-1228229 Slu7 PF11708.3 g17884.t1 - 0.0008 19.2 0.7 0.0011 18.8 0.5 1.2 1 0 0 1 1 1 1 Pre-mRNA splicing Prp18-interacting factor | Ref_seq=scaffold716_contigs=3, transcript_loc=scaffold716_contigs=3:9695-10413 Augustus predicted protein sequence Tomato scaffold716_contigs=3~9695-10413 Chon_Sulph_att PF06566.6 g48234.t1 - 0.13 11.8 10.8 0.17 11.4 7.5 1.2 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:66049-66369 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~66049-66369 DUF4242 PF14026.1 g64246.t1 - 0.018 15 0.4 1.9 8.6 0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4242) | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:117183-118845 Augustus predicted protein sequence Tomato scaffold2057_contigs=11~117183-118845 PBP1_TM PF14812.1 g4721.t1 - 7.7 6.8 8.5 38 4.6 5.5 2.2 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:293927-294373 Augustus predicted protein sequence Tomato scaffold306_contigs=7~293927-294373 PLATZ PF04640.9 g27223.t1 - 0.0000042 26.8 0 0.0000069 26.1 0 1.3 1 0 0 1 1 1 1 PLATZ transcription factor | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:62665-64544 Augustus predicted protein sequence Tomato scaffold974_contigs=15~62665-64544 MMtag PF10159.4 g38070.t1 - 0.77 9.8 7.8 1.4 8.9 5.4 1.4 1 0 0 1 1 1 0 Kinase phosphorylation protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:123070-124069 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~123070-124069 DUF4200 PF13863.1 g50311.t1 - 0.19 11.6 3.9 0.27 11.1 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:31628-32323 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~31628-32323 UPF0242 PF06785.6 g65921.t1 - 0.067 11.8 0.2 0.071 11.7 0.1 1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:168844-169137 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~168844-169137 CENP-F_leu_zip PF10473.4 g23842.t1 - 0.14 11.9 0 0.19 11.5 0 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:13895-14353 Augustus predicted protein sequence Tomato scaffold871_contigs=9~13895-14353 DUF4398 PF14346.1 g20952.t1 - 0.017 15.1 0.5 0.025 14.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) | Ref_seq=scaffold785_contigs=8, transcript_loc=scaffold785_contigs=8:60479-60938 Augustus predicted protein sequence Tomato scaffold785_contigs=8~60479-60938 DUF4233 PF14017.1 g21150.t1 - 0.09 12.7 1.4 0.17 11.8 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:34636-35229 Augustus predicted protein sequence Tomato scaffold794_contigs=4~34636-35229 FlxA PF14282.1 g27779.t1 - 0.0058 16.5 5.2 0.0082 16 3.6 1.2 1 0 0 1 1 1 1 FlxA-like protein | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:697639-697890 Augustus predicted protein sequence Tomato scaffold983_contigs=13~697639-697890 DUF4131 PF13567.1 g36533.t1 - 0.4 10 2.9 0.46 9.8 2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold1202_contigs=2, transcript_loc=scaffold1202_contigs=2:15915-16500 Augustus predicted protein sequence Tomato scaffold1202_contigs=2~15915-16500 z-alpha PF02295.12 g56986.t1 - 0.18 11.5 1.2 21 4.9 0 2.4 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:268682-269843 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~268682-269843 SPG48 PF14764.1 g86426.t1 - 0.084 11.3 0 0.1 11.1 0 1 1 0 0 1 1 1 0 AP-5 complex subunit, vesicle trafficking | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:13383-14114 Augustus predicted protein sequence Tomato scaffold2861_contigs=1~13383-14114 ANP PF00212.13 g85171.t1 - 0.33 11 1.9 0.97 9.5 0 2.6 3 0 0 3 3 3 0 Atrial natriuretic peptide | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:48694-49020 Augustus predicted protein sequence Tomato scaffold2793_contigs=1~48694-49020 Transposase_28 PF04195.7 g36455.t1 - 0.097 11.9 0 0.18 11 0 1.4 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:2614-7289 Augustus predicted protein sequence Tomato scaffold1196_contigs=5~2614-7289 SlyX PF04102.7 g62247.t1 - 0.87 9.9 3.6 3 8.2 1.3 2.4 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:270033-272787 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~270033-272787 Amidohydro_2 PF04909.9 g36880.t1 - 0.11 12 0 0.11 12 0 1 1 0 0 1 1 1 0 Amidohydrolase | Ref_seq=scaffold1211_contigs=3, transcript_loc=scaffold1211_contigs=3:20857-21126 Augustus predicted protein sequence Tomato scaffold1211_contigs=3~20857-21126 MGC-24 PF05283.6 g50451.t1 - 0.16 11.7 3.7 0.2 11.4 2.6 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:186564-186965 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~186564-186965 DUF605 PF04652.11 g79759.t1 - 1.5 8.1 13.2 1.7 7.9 9.1 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:522200-522751 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~522200-522751 DUF3596 PF12167.3 g364.t1 - 1.4 8.4 6.9 20 4.7 0.4 3.8 3 2 3 6 6 6 0 Domain of unknown function (DUF3596) | Ref_seq=scaffold25_contigs=1, transcript_loc=scaffold25_contigs=1:449-1228 Augustus predicted protein sequence Tomato scaffold25_contigs=1~449-1228 Retrotrans_gag PF03732.12 g31808.t1 - 0.002 18.1 0.2 0.0045 17 0.1 1.5 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:201287-201820 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~201287-201820 RVT_3 PF13456.1 g60343.t1 - 0.0000012 28.2 0 0.0000019 27.5 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:38266-38646 Augustus predicted protein sequence Tomato scaffold1949_contigs=5~38266-38646 GatB_N PF02934.10 g9096.t1 - 0.1 11.4 0.2 0.18 10.5 0.1 1.4 1 1 0 1 1 1 0 GatB/GatE catalytic domain | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:101708-103423 Augustus predicted protein sequence Tomato scaffold446_contigs=6~101708-103423 Endonuc-BsobI PF09194.5 g74475.t1 - 0.072 12 0.1 6.5 5.5 0 2.1 1 1 1 2 2 2 0 Restriction endonuclease BsobI | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:36576-37229 Augustus predicted protein sequence Tomato scaffold2547_contigs=8~36576-37229 UBN2 PF14223.1 g5592.t1 - 0.0065 16.2 0 0.0081 15.9 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:63609-63869 Augustus predicted protein sequence Tomato scaffold334_contigs=13~63609-63869 DUF1510 PF07423.6 g48005.t1 - 0.031 13.6 1.1 0.038 13.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:332035-332577 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~332035-332577 DUF260 PF03195.9 g40692.t1 - 0.0072 16.5 0.2 0.014 15.6 0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF260 | Ref_seq=scaffold1306_contigs=15, transcript_loc=scaffold1306_contigs=15:52608-53232 Augustus predicted protein sequence Tomato scaffold1306_contigs=15~52608-53232 DUF2481 PF10654.4 g19012.t1 - 0.021 14.5 0 0.053 13.2 0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2481) | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:176939-177397 Augustus predicted protein sequence Tomato scaffold742_contigs=5~176939-177397 DUF2892 PF11127.3 g53689.t1 - 0.0053 16.5 0.5 3.1 7.7 0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2892) | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:44156-44743 Augustus predicted protein sequence Tomato scaffold1701_contigs=25~44156-44743 NYD-SP28_assoc PF14775.1 g8193.t1 - 0.41 10.3 2.8 0.36 10.5 1.1 1.5 2 0 0 2 2 2 0 Sperm tail C-terminal domain | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:332838-333137 Augustus predicted protein sequence Tomato scaffold421_contigs=12~332838-333137 Methyltransf_12 PF08242.7 g5199.t1 - 0.023 15.1 2.9 15 6.1 0.1 4 1 1 1 2 2 2 0 Methyltransferase domain | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:26048-26416 Augustus predicted protein sequence Tomato scaffold319_contigs=6~26048-26416 EBV-NA3 PF05009.7 g26322.t1 - 0.14 11.3 0.7 0.15 11.2 0.5 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:274880-275107 Augustus predicted protein sequence Tomato scaffold947_contigs=9~274880-275107 AsmA_2 PF13502.1 g77308.t1 - 0.00008 22 0 2.2 7.5 0 3.1 3 0 0 3 3 3 3 AsmA-like C-terminal region | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:18140-20870 Augustus predicted protein sequence Tomato scaffold2654_contigs=6~18140-20870 DUF4219 PF13961.1 g3327.t1 - 0.000036 23 0.4 0.000054 22.5 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold269_contigs=8, transcript_loc=scaffold269_contigs=8:40944-41186 Augustus predicted protein sequence Tomato scaffold269_contigs=8~40944-41186 zf-BED PF02892.10 g52617.t1 - 0.0049 16.6 1.6 0.0094 15.6 1.1 1.5 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1641_contigs=4, transcript_loc=scaffold1641_contigs=4:27413-30042 Augustus predicted protein sequence Tomato scaffold1641_contigs=4~27413-30042 DBC1 PF14443.1 g20505.t1 - 0.0048 16.4 0.3 0.023 14.2 0.1 2 1 1 1 2 2 2 1 DBC1 | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:841701-842036 Augustus predicted protein sequence Tomato scaffold774_contigs=20~841701-842036 ATHILA PF03078.10 g75528.t1 - 0.0000011 27.5 0.1 0.0000014 27.2 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:28608-28934 Augustus predicted protein sequence Tomato scaffold2600_contigs=18~28608-28934 UBN2 PF14223.1 g51284.t1 - 0.00011 22 0.1 0.00025 20.7 0 1.7 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:302991-303420 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~302991-303420 RNase_H2-Ydr279 PF09468.5 g53849.t1 - 0.000063 22.3 19.5 0.00007 22.1 13.5 1.1 1 0 0 1 1 1 1 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:321077-324306 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~321077-324306 zf-CCHC_6 PF15288.1 g60171.t1 - 0.049 13.3 0.2 0.093 12.4 0.2 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:226484-227600 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~226484-227600 DUF4582 PF15189.1 g26838.t1 - 0.04 13.1 1 0.081 12.1 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4582) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:160021-160874 Augustus predicted protein sequence Tomato scaffold961_contigs=8~160021-160874 IF2_assoc PF08364.6 g52043.t1 - 3.6 7.6 6.5 2.6 8.1 0.3 2.6 2 0 0 2 2 2 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:347290-348561 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~347290-348561 DUF4025 PF13217.1 g17254.t1 - 0.072 12.9 8.6 2 8.2 0.8 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4025) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:124013-125387 Augustus predicted protein sequence Tomato scaffold701_contigs=5~124013-125387 zf-CCHC PF00098.18 g17591.t1 - 0.00033 20.4 0.7 0.00047 19.9 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:388096-388416 Augustus predicted protein sequence Tomato scaffold708_contigs=18~388096-388416 Antimicrobial10 PF08105.6 g34066.t1 - 0.05 13.2 0 3.8 7.1 0 2.7 3 0 0 3 3 3 0 Metchnikowin family | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:267619-268152 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~267619-268152 DUF1666 PF07891.7 g23974.t1 - 0.026 13.9 0.6 0.043 13.2 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1666) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:296371-297784 Augustus predicted protein sequence Tomato scaffold874_contigs=5~296371-297784 RVP_2 PF08284.6 g10682.t1 - 0.000014 25 0 0.000026 24.1 0 1.4 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:248886-252015 Augustus predicted protein sequence Tomato scaffold503_contigs=7~248886-252015 FliJ PF02050.11 g34788.t1 - 0.017 15.1 4 0.023 14.7 2.8 1.3 1 0 0 1 1 1 0 Flagellar FliJ protein | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:200387-200698 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~200387-200698 ATHILA PF03078.10 g68250.t1 - 0.004 15.8 0.2 0.0076 14.8 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:26550-29838 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~26550-29838 MCLC PF05934.6 g72497.t1 - 0.1 10.8 0.3 0.18 10 0.2 1.3 1 0 0 1 1 1 0 Mid-1-related chloride channel (MCLC) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:335352-338610 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~335352-338610 Phage_CI_repr PF07022.8 g36597.t1 - 0.039 14 0 0.073 13.1 0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:47856-52898 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~47856-52898 CENP-H PF05837.7 g39690.t1 - 0.018 15.2 2.1 0.024 14.7 1.5 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:13478-13873 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~13478-13873 U1snRNP70_N PF12220.3 g28482.t1 - 0.0036 17.5 1.7 0.005 17.1 1.2 1.2 1 0 0 1 1 1 1 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:32497-32784 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~32497-32784 Transposase_28 PF04195.7 g39161.t1 - 0.00025 20.3 0.1 0.00028 20.2 0.1 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:148368-148904 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~148368-148904 bZIP_2 PF07716.10 g39807.t1 - 0.047 13.5 1.6 0.085 12.6 1.1 1.5 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:317328-318280 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~317328-318280 Clusterin PF01093.12 g10012.t1 - 0.0031 16.3 0.3 0.0044 15.8 0.2 1.2 1 0 0 1 1 1 1 Clusterin | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:170521-171223 Augustus predicted protein sequence Tomato scaffold481_contigs=9~170521-171223 DUF605 PF04652.11 g50398.t1 - 2.9 7.2 6.8 5.6 6.2 4.7 1.5 1 1 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:299548-300120 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~299548-300120 UBN2_2 PF14227.1 g48711.t1 - 0.00063 19.2 0 0.00094 18.7 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:819788-820225 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~819788-820225 AvrB_AvrC PF05394.6 g61386.t1 - 0.01 14.8 0.4 0.011 14.7 0.3 1 1 0 0 1 1 1 0 Avirulence protein | Ref_seq=scaffold1969_contigs=2, transcript_loc=scaffold1969_contigs=2:12253-12501 Augustus predicted protein sequence Tomato scaffold1969_contigs=2~12253-12501 CENP-H PF05837.7 g31418.t1 - 0.039 14.1 3.6 0.049 13.8 2.5 1.2 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1072_contigs=9, transcript_loc=scaffold1072_contigs=9:23755-23985 Augustus predicted protein sequence Tomato scaffold1072_contigs=9~23755-23985 DUF3584 PF12128.3 g2279.t1 - 0.0029 15 0.1 0.0039 14.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:1269-2820 Augustus predicted protein sequence Tomato scaffold234_contigs=2~1269-2820 Phage_Coat_A PF05357.8 g82444.t1 - 0.00075 19 0.7 0.0015 18 0.5 1.6 1 1 0 1 1 1 1 Phage Coat Protein A | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:72436-72822 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~72436-72822 Vps5 PF09325.5 g34154.t1 - 0.032 13.4 0.5 0.054 12.7 0.3 1.3 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:19030-21546 Augustus predicted protein sequence Tomato scaffold1143_contigs=1~19030-21546 RVT_2 PF07727.9 g65592.t1 - 0.011 14.7 0 0.012 14.5 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:60113-62040 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~60113-62040 DUF4100 PF13352.1 g13050.t1 - 0.039 13.3 0 0.039 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4100) | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:19981-20268 Augustus predicted protein sequence Tomato scaffold568_contigs=22~19981-20268 SinI PF08671.5 g34717.t1 - 0.085 12.2 1.8 1.8 8 0 2.4 2 0 0 2 2 2 0 Anti-repressor SinI | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:103397-104509 Augustus predicted protein sequence Tomato scaffold1155_contigs=5~103397-104509 CAP_N PF01213.14 g78073.t1 - 0.61 9.3 6.8 0.79 8.9 4.7 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:95346-95741 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~95346-95741 N_NLPC_P60 PF12912.2 g30773.t1 - 0.086 12.9 2.3 0.17 12 1.5 1.6 1 1 1 2 2 2 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:283466-287565 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~283466-287565 Pollen_Ole_e_I PF01190.12 g62104.t1 - 7.3E-011 41.7 0 0.00032 20.4 0 2.3 2 0 0 2 2 2 2 Pollen proteins Ole e I like | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:223417-229669 Augustus predicted protein sequence Tomato scaffold1982_contigs=6~223417-229669 Pollen_allerg_2 PF01620.11 g58094.t1 - 0.026 14.8 0.5 0.042 14.1 0.3 1.2 1 0 0 1 1 1 0 Ribonuclease (pollen allergen) | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:62968-65966 Augustus predicted protein sequence Tomato scaffold1843_contigs=11~62968-65966 PWWP PF00855.12 g527.t1 - 0.057 13.6 0.3 0.064 13.4 0.2 1.2 1 0 0 1 1 1 0 PWWP domain | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:98015-98404 Augustus predicted protein sequence Tomato scaffold51_contigs=2~98015-98404 SSFA2_C PF14723.1 g80295.t1 - 0.0026 17.5 0 0.0034 17.1 0 1.2 1 0 0 1 1 1 1 Sperm-specific antigen 2 C-terminus | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:1014341-1015063 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~1014341-1015063 Tiny_TM_bacill PF09680.5 g59317.t1 - 0.75 9.2 4.9 1.5 8.3 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold1913_contigs=1, transcript_loc=scaffold1913_contigs=1:83959-84315 Augustus predicted protein sequence Tomato scaffold1913_contigs=1~83959-84315 Tachykinin PF02202.11 g14267.t1 - 0.086 12.5 0 0.28 10.9 0 1.9 1 0 0 1 1 1 0 Tachykinin family | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:65666-66175 Augustus predicted protein sequence Tomato scaffold587_contigs=13~65666-66175 Pkinase PF00069.20 g22556.t1 - 0.0017 17.5 1 0.013 14.6 0 2 1 1 1 2 2 2 2 Protein kinase domain | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:359716-360651 Augustus predicted protein sequence Tomato scaffold831_contigs=10~359716-360651 CCDC71L PF15374.1 g84147.t1 - 0.079 12.2 5.7 0.088 12.1 3.9 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 71L | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:189315-190460 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~189315-190460 DUF605 PF04652.11 g5790.t1 - 0.51 9.6 5.4 0.71 9.2 3.7 1.2 1 1 0 1 1 1 0 Vta1 like | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:224482-226413 Augustus predicted protein sequence Tomato scaffold338_contigs=10~224482-226413 DUF336 PF03928.9 g36206.t1 - 0.012 15.4 0 0.023 14.4 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF336) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:191981-192702 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~191981-192702 Kelch_1 PF01344.20 g16148.t1 - 0.12 11.9 1.9 1.4 8.4 0.5 2.6 2 1 1 3 3 3 0 Kelch motif | Ref_seq=scaffold655_contigs=15, transcript_loc=scaffold655_contigs=15:270475-271700 Augustus predicted protein sequence Tomato scaffold655_contigs=15~270475-271700 rve PF00665.21 g33787.t1 - 0.058 13.5 0 0.1 12.7 0 1.4 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:375629-376872 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~375629-376872 ATHILA PF03078.10 g57457.t1 - 0.000000095 31 0.1 0.00000011 30.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:136382-137315 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~136382-137315 P2X_receptor PF00864.14 g46799.t1 - 0.15 10.7 0 0.19 10.3 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:78455-79289 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~78455-79289 DAP PF15228.1 g77586.t1 - 0.3 11.8 3.2 0.71 10.6 0.2 2.1 2 0 0 2 2 2 0 Death-associated protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:85825-86458 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~85825-86458 SBP PF03110.9 g3827.t1 - 0.072 13.3 2.7 5.1 7.3 3.1 2.1 2 0 0 2 2 2 0 SBP domain | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:204153-204697 Augustus predicted protein sequence Tomato scaffold281_contigs=6~204153-204697 DUF3499 PF12005.3 g5525.t1 - 0.095 12.8 0 0.16 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:188783-189339 Augustus predicted protein sequence Tomato scaffold330_contigs=6~188783-189339 PROL5-SMR PF15621.1 g26766.t1 - 0.25 11.8 4.3 0.29 11.5 3 1.2 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold959_contigs=1, transcript_loc=scaffold959_contigs=1:58951-59199 Augustus predicted protein sequence Tomato scaffold959_contigs=1~58951-59199 Mnd1 PF03962.10 g26737.t1 - 0.27 10.8 3.7 0.42 10.2 2.5 1.2 1 0 0 1 1 1 0 Mnd1 family | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:144561-149773 Augustus predicted protein sequence Tomato scaffold958_contigs=5~144561-149773 DUF3137 PF11335.3 g12497.t1 - 0.16 11.5 0 0.25 11 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3137) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:81481-82481 Augustus predicted protein sequence Tomato scaffold556_contigs=11~81481-82481 Yeast_MT PF11403.3 g68904.t1 - 5.3 7.2 5.7 31 4.8 0.4 2.3 2 0 0 2 2 2 0 Yeast metallothionein | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:35817-40334 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~35817-40334 ADK_lid PF05191.9 g68528.t1 - 0.0057 16.2 0.5 0.015 14.9 0.4 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid | Ref_seq=scaffold2216_contigs=4, transcript_loc=scaffold2216_contigs=4:27255-28471 Augustus predicted protein sequence Tomato scaffold2216_contigs=4~27255-28471 FH2 PF02181.18 g48257.t1 - 0.0074 15.2 0 0.01 14.7 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:119666-121821 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~119666-121821 Retrotrans_gag PF03732.12 g14316.t1 - 0.056 13.5 0 0.072 13.1 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:12338-12948 Augustus predicted protein sequence Tomato scaffold588_contigs=2~12338-12948 U-box PF04564.10 g33498.t1 - 0.021 14.7 0.2 0.067 13.1 0 1.9 2 0 0 2 2 2 0 U-box domain | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:31554-36292 Augustus predicted protein sequence Tomato scaffold1132_contigs=4~31554-36292 Tox-URI2 PF15653.1 g62727.t1 - 0.11 12.7 0.1 1.2 9.4 0 2.7 1 1 1 2 2 2 0 URI fold toxin 2 | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:536696-539478 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~536696-539478 rve PF00665.21 g38871.t1 - 0.00064 19.8 0.3 0.0018 18.3 0.1 1.8 2 0 0 2 2 2 1 Integrase core domain | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:73495-74268 Augustus predicted protein sequence Tomato scaffold1253_contigs=5~73495-74268 Ashwin PF15323.1 g14121.t1 - 0.048 13.6 1.4 0.056 13.4 0.9 1.1 1 0 0 1 1 1 0 Developmental protein | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:60756-61252 Augustus predicted protein sequence Tomato scaffold586_contigs=6~60756-61252 FlaF PF07309.6 g67448.t1 - 0.11 12.3 0 0.11 12.3 0 1.1 1 0 0 1 1 1 0 Flagellar protein FlaF | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:359501-359832 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~359501-359832 DBD_Tnp_Mut PF03108.10 g31672.t1 - 0.000000017 33.9 0.7 0.000000023 33.4 0.5 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:97092-97625 Augustus predicted protein sequence Tomato scaffold1083_contigs=11~97092-97625 DUF4164 PF13747.1 g84015.t1 - 0.12 12.4 0 0.23 11.6 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:119517-125676 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~119517-125676 bZIP_2 PF07716.10 g6277.t1 - 0.13 12.1 5.8 0.34 10.7 1.1 2.6 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:119867-121712 Augustus predicted protein sequence Tomato scaffold357_contigs=6~119867-121712 Secretin_N_2 PF07655.8 g3846.t1 - 0.18 12.1 5.7 0.29 11.5 3.9 1.2 1 0 0 1 1 1 0 Secretin N-terminal domain | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:302975-305544 Augustus predicted protein sequence Tomato scaffold281_contigs=6~302975-305544 Ribosomal_S5_C PF03719.10 g39819.t1 - 0.13 11.5 0 0.21 10.8 0 1.3 1 0 0 1 1 1 0 Ribosomal protein S5, C-terminal domain | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:379886-382659 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~379886-382659 DUF3331 PF11811.3 g69567.t1 - 0.092 12.3 0.1 0.1 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3331) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:145760-146026 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~145760-146026 PH_BEACH PF14844.1 g24483.t1 - 0.15 11.9 0.1 0.19 11.6 0.1 1.1 1 0 0 1 1 1 0 PH domain associated with Beige/BEACH | Ref_seq=scaffold883_contigs=3, transcript_loc=scaffold883_contigs=3:129936-130253 Augustus predicted protein sequence Tomato scaffold883_contigs=3~129936-130253 DUF2362 PF10154.4 g3942.t1 - 0.066 11.8 2.7 0.074 11.7 1.9 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:99687-100106 Augustus predicted protein sequence Tomato scaffold283_contigs=2~99687-100106 Adaptin_binding PF10199.4 g21978.t1 - 0.000021 24.8 3.8 0.000036 24 2.6 1.4 1 0 0 1 1 1 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:445172-450739 Augustus predicted protein sequence Tomato scaffold817_contigs=11~445172-450739 zf-C4_ClpX PF06689.8 g10351.t1 - 0.018 14.5 0.2 0.029 13.8 0.1 1.4 1 0 0 1 1 1 0 ClpX C4-type zinc finger | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:25056-25472 Augustus predicted protein sequence Tomato scaffold495_contigs=2~25056-25472 HALZ PF02183.13 g19240.t1 - 0.25 11 8.3 1.6 8.5 1.9 2.9 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:207498-208721 Augustus predicted protein sequence Tomato scaffold748_contigs=11~207498-208721 DUF269 PF03270.8 g85114.t1 - 0.039 13.9 0.1 2.3 8.2 0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF269 | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:84329-87314 Augustus predicted protein sequence Tomato scaffold2790_contigs=1~84329-87314 DUF1160 PF06648.6 g84162.t1 - 0.052 13.3 0 0.084 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:222599-225316 Augustus predicted protein sequence Tomato scaffold2764_contigs=1~222599-225316 Retrotrans_gag PF03732.12 g49858.t1 - 0.0023 17.9 0.1 0.005 16.8 0 1.5 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:447308-450086 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~447308-450086 zf-CCHC PF00098.18 g13658.t1 - 0.00061 19.5 0.9 0.00096 18.9 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:270871-272289 Augustus predicted protein sequence Tomato scaffold578_contigs=5~270871-272289 DUF869 PF05911.6 g43188.t1 - 0.0055 15 5.3 0.0075 14.5 3.7 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:28453-30208 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~28453-30208 DUF2894 PF11445.3 g11190.t1 - 0.7 10.1 8.4 5.5 7.2 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:28086-29635 Augustus predicted protein sequence Tomato scaffold519_contigs=1~28086-29635 Tropomyosin_1 PF12718.2 g40286.t1 - 0.09 12.6 4.2 0.11 12.3 2.9 1.1 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:12979-14746 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~12979-14746 DUF506 PF04720.7 g31654.t1 - 0.0023 17.6 2.2 0.0032 17.1 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF506) | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:1-733 Augustus predicted protein sequence Tomato scaffold1083_contigs=11~1-733 RseC_MucC PF04246.7 g4046.t1 - 0.032 13.8 0 0.041 13.4 0 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC | Ref_seq=scaffold288_contigs=2, transcript_loc=scaffold288_contigs=2:73526-73774 Augustus predicted protein sequence Tomato scaffold288_contigs=2~73526-73774 NDUF_B5 PF09781.4 g38194.t1 - 0.014 14.6 0.1 0.017 14.4 0 1.1 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:559561-559800 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~559561-559800 F-box-like PF12937.2 g41218.t1 - 0.0096 15.6 0.7 0.043 13.5 0.1 2.2 2 0 0 2 2 2 1 F-box-like | Ref_seq=scaffold1327_contigs=1, transcript_loc=scaffold1327_contigs=1:19036-22494 Augustus predicted protein sequence Tomato scaffold1327_contigs=1~19036-22494 Leu_zip PF15294.1 g78360.t1 - 0.077 12 0 0.084 11.9 0 1 1 0 0 1 1 1 0 Leucine zipper | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:310235-310513 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~310235-310513 Gag_p24 PF00607.15 g63814.t1 - 0.086 12.3 0 0.11 12 0 1.1 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:259424-259948 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~259424-259948 ATHILA PF03078.10 g62514.t1 - 0.0067 15 0 0.0071 14.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:348183-348488 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~348183-348488 GBP_C PF02841.9 g12377.t1 - 0.023 13.8 8 0.029 13.5 5.5 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:27648-28788 Augustus predicted protein sequence Tomato scaffold549_contigs=4~27648-28788 DUF755 PF05501.6 g6296.t1 - 0.32 11 8.6 0.46 10.5 6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:170147-170620 Augustus predicted protein sequence Tomato scaffold357_contigs=6~170147-170620 TYA PF01021.14 g28532.t1 - 0.1 12.8 0.1 0.23 11.6 0 1.7 1 0 0 1 1 1 0 TYA transposon protein | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:269528-270545 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~269528-270545 PBP_sp32 PF07222.7 g17363.t1 - 0.25 10.4 4.6 0.049 12.8 0.6 1.7 2 0 0 2 2 2 0 Proacrosin binding protein sp32 | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:52118-53082 Augustus predicted protein sequence Tomato scaffold704_contigs=10~52118-53082 RNA_pol_3_Rpc31 PF11705.3 g63718.t1 - 0.95 9.3 7.4 0.96 9.3 5.1 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:69812-70039 Augustus predicted protein sequence Tomato scaffold2042_contigs=5~69812-70039 UPF0004 PF00919.15 g73813.t1 - 0.079 12.7 0.1 2.3 8 0 2.1 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:67011-68612 Augustus predicted protein sequence Tomato scaffold2510_contigs=23~67011-68612 Tropomyosin PF00261.15 g28244.t1 - 0.011 14.8 4.8 0.021 13.9 3.3 1.4 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:21075-22266 Augustus predicted protein sequence Tomato scaffold994_contigs=5~21075-22266 Med17 PF10156.4 g67980.t1 - 0.065 11.5 0.5 0.077 11.2 0.3 1 1 0 0 1 1 1 0 Subunit 17 of Mediator complex | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:1-333 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~1-333 CAF-1_p150 PF11600.3 g34422.t1 - 6.9 5.9 25.2 8.2 5.7 17.4 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:63402-63686 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~63402-63686 zf-Tim10_DDP PF02953.10 g43441.t1 - 0.026 13.8 0.3 0.046 13 0.2 1.3 1 0 0 1 1 1 0 Tim10/DDP family zinc finger | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:78974-80854 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~78974-80854 YABBY PF04690.8 g57824.t1 - 0.071 13.3 0.3 0.11 12.6 0.2 1.3 1 0 0 1 1 1 0 YABBY protein | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:11444-12837 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~11444-12837 DUF572 PF04502.8 g29634.t1 - 0.041 13.1 15.5 0.054 12.6 10.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:343012-343697 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~343012-343697 Fer2 PF00111.22 g36356.t1 - 1.1 9.1 5.1 1.8 8.3 0.3 2.3 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:54733-57021 Augustus predicted protein sequence Tomato scaffold1193_contigs=15~54733-57021 MscS_porin PF12795.2 g83737.t1 - 0.03 13.6 0 0.03 13.6 0 1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1612320-1612791 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1612320-1612791 Ribosomal_60s PF00428.14 g12901.t1 - 1.1 9.7 8 0.29 11.5 0.3 2.3 2 0 0 2 2 2 0 60s Acidic ribosomal protein | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:297802-299125 Augustus predicted protein sequence Tomato scaffold561_contigs=10~297802-299125 DUF4283 PF14111.1 g2186.t1 - 0.00015 20.9 0 0.00018 20.6 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:138365-138682 Augustus predicted protein sequence Tomato scaffold228_contigs=4~138365-138682 WHIM2 PF15613.1 g28550.t1 - 0.014 15.2 0.1 0.041 13.8 0 1.8 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 2 | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:355680-356108 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~355680-356108 BRCT_assoc PF12820.2 g56430.t1 - 0.0046 16.7 0.1 2.4 7.9 0 2.3 1 1 1 2 2 2 2 Serine-rich domain associated with BRCT | Ref_seq=scaffold1805_contigs=6, transcript_loc=scaffold1805_contigs=6:2478-4107 Augustus predicted protein sequence Tomato scaffold1805_contigs=6~2478-4107 CAF-1_p150 PF11600.3 g34688.t1 - 0.0062 15.9 29.3 0.0085 15.4 20.3 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:6534-7133 Augustus predicted protein sequence Tomato scaffold1155_contigs=5~6534-7133 DBD_Tnp_Mut PF03108.10 g26257.t1 - 0.0000025 26.9 0 0.0000041 26.2 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold946_contigs=4, transcript_loc=scaffold946_contigs=4:2884-3951 Augustus predicted protein sequence Tomato scaffold946_contigs=4~2884-3951 Phage_integrase PF00589.17 g87469.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:3635-3979 Augustus predicted protein sequence Tomato scaffold3123_contigs=1~3635-3979 FlxA PF14282.1 g50183.t1 - 0.0039 17 1.4 0.027 14.4 0.2 2 2 0 0 2 2 2 1 FlxA-like protein | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:136855-137184 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~136855-137184 RLI PF04068.10 g58052.t1 - 0.016 14.7 0.4 0.47 10 0 2.4 2 0 0 2 2 2 0 Possible Fer4-like domain in RNase L inhibitor, RLI | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:282129-285983 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~282129-285983 DUF3290 PF11694.3 g37033.t1 - 0.0051 16.5 0.1 0.0072 16 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3290) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:45872-46267 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~45872-46267 Na_K-ATPase PF00287.13 g21241.t1 - 0.12 11 0 0.22 10.2 0 1.3 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:194683-195686 Augustus predicted protein sequence Tomato scaffold795_contigs=8~194683-195686 Lectin_legB PF00139.14 g61037.t1 - 0.034 13.5 0.1 0.069 12.5 0 1.6 1 1 0 1 1 1 0 Legume lectin domain | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:166286-166597 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~166286-166597 THOC7 PF05615.8 g18836.t1 - 0.012 15.8 1.1 0.017 15.4 0.8 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:673380-673874 Augustus predicted protein sequence Tomato scaffold731_contigs=13~673380-673874 Caps_synth PF05704.7 g10421.t1 - 0.032 13.3 0.1 0.04 13 0.1 1.1 1 0 0 1 1 1 0 Capsular polysaccharide synthesis protein | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:129206-129718 Augustus predicted protein sequence Tomato scaffold498_contigs=12~129206-129718 BacteriocIIc_cy PF12173.3 g20010.t1 - 0.012 15.6 0.1 0.014 15.3 0 1.3 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like | Ref_seq=scaffold766_contigs=4, transcript_loc=scaffold766_contigs=4:1949-2343 Augustus predicted protein sequence Tomato scaffold766_contigs=4~1949-2343 Metal_resist PF13801.1 g81766.t1 - 9.2 6.2 12.7 1 9.3 5.4 1.8 1 1 0 2 2 2 0 Heavy-metal resistance | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:592569-592904 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~592569-592904 MCC-bdg_PDZ PF10506.4 g43704.t1 - 0.032 14 0.2 0.069 12.9 0.1 1.5 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:68027-68587 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~68027-68587 DUF2428 PF10350.4 g73775.t1 - 0.11 11.4 0 0.13 11.2 0 1 1 0 0 1 1 1 0 Putative death-receptor fusion protein (DUF2428) | Ref_seq=scaffold2508_contigs=3, transcript_loc=scaffold2508_contigs=3:20662-20985 Augustus predicted protein sequence Tomato scaffold2508_contigs=3~20662-20985 PEGSRP PF07623.6 g3705.t1 - 0.092 12 0.2 0.17 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:215254-215652 Augustus predicted protein sequence Tomato scaffold280_contigs=12~215254-215652 Sigma70_ner PF04546.8 g33640.t1 - 0.0081 15.7 3.4 0.017 14.7 2.4 1.4 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:343960-346494 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~343960-346494 Mtc PF03820.12 g62906.t1 - 0.24 10 0 0.36 9.4 0 1.1 1 0 0 1 1 1 0 Tricarboxylate carrier | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:227895-229925 Augustus predicted protein sequence Tomato scaffold2012_contigs=13~227895-229925 DUF972 PF06156.8 g16012.t1 - 1.1 9.6 6.5 2.6 8.4 3.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold652_contigs=1, transcript_loc=scaffold652_contigs=1:5005-5361 Augustus predicted protein sequence Tomato scaffold652_contigs=1~5005-5361 Cluap1 PF10234.4 g34168.t1 - 0.14 11.3 10.3 0.2 10.8 7.2 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:51158-51805 Augustus predicted protein sequence Tomato scaffold1144_contigs=4~51158-51805 CDC45 PF02724.9 g30651.t1 - 0.031 12.3 4.9 0.026 12.5 3.4 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:456858-458791 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~456858-458791 zf-RING_2 PF13639.1 g3916.t1 - 0.14 12 0.5 0.26 11.1 0 1.7 2 0 0 2 2 2 0 Ring finger domain | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:36290-38551 Augustus predicted protein sequence Tomato scaffold283_contigs=2~36290-38551 ATHILA PF03078.10 g76596.t1 - 0.0000015 27 0 0.0000016 27 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:199834-200139 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~199834-200139 Borrelia_P83 PF05262.6 g84176.t1 - 0.27 9.4 4.4 0.3 9.2 3.1 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:23123-23455 Augustus predicted protein sequence Tomato scaffold2765_contigs=1~23123-23455 VGCC_beta4Aa_N PF12052.3 g72205.t1 - 0.006 16.4 1.4 0.009 15.8 1 1.4 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:628200-628703 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~628200-628703 DUF347 PF03988.7 g35210.t1 - 0.0077 16 0 0.01 15.6 0 1.2 1 0 0 1 1 1 1 Repeat of Unknown Function (DUF347) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:679494-679787 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~679494-679787 FUSC PF04632.7 g39984.t1 - 0.045 12.2 0.5 0.049 12 0.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:970-1613 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~970-1613 Trypan_PARP PF05887.6 g34095.t1 - 0.0019 18 4.7 0.0019 18 3.3 1.3 1 1 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:9812-10093 Augustus predicted protein sequence Tomato scaffold1142_contigs=5~9812-10093 GvpL_GvpF PF06386.6 g35194.t1 - 0.15 11.6 9.5 0.23 11 6.6 1.2 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:597523-598334 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~597523-598334 DUF4219 PF13961.1 g84080.t1 - 0.000021 23.7 0.3 0.000039 22.9 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:322145-325819 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~322145-325819 Meth_synt_1 PF08267.7 g46424.t1 - 0.03 13.6 0 0.033 13.4 0 1.1 1 0 0 1 1 1 0 Cobalamin-independent synthase, N-terminal domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:77229-77693 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~77229-77693 zf-CCHC PF00098.18 g24983.t1 - 0.18 11.7 6.7 0.28 11.1 4.7 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:187242-187496 Augustus predicted protein sequence Tomato scaffold907_contigs=7~187242-187496 RNA_pol_3_Rpc31 PF11705.3 g20349.t1 - 3.3 7.5 7.9 3.3 7.5 5.5 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:108459-108686 Augustus predicted protein sequence Tomato scaffold773_contigs=6~108459-108686 DUF1725 PF08333.6 g9556.t1 - 0.0024 17.1 0.3 0.0054 15.9 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1725) | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:153855-155378 Augustus predicted protein sequence Tomato scaffold461_contigs=4~153855-155378 DUF1985 PF09331.6 g83982.t1 - 0.026 14.3 0 0.038 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:24592-25708 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~24592-25708 Lipase_bact_N PF12262.3 g48070.t1 - 0.036 13.2 0 0.038 13.1 0 1 1 0 0 1 1 1 0 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:548006-548881 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~548006-548881 O-antigen_lig PF13425.1 g8864.t1 - 0.0023 17.9 4.9 0.003 17.5 3.4 1.1 1 0 0 1 1 1 1 O-antigen ligase like membrane protein | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:28786-29193 Augustus predicted protein sequence Tomato scaffold442_contigs=14~28786-29193 HSBP1 PF06825.7 g87092.t1 - 0.066 12.8 0.3 0.075 12.6 0.2 1.2 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold2936_contigs=1, transcript_loc=scaffold2936_contigs=1:4698-4940 Augustus predicted protein sequence Tomato scaffold2936_contigs=1~4698-4940 Vicilin_N PF04702.7 g53036.t1 - 0.1 12.2 1.3 0.12 11.9 0.9 1.1 1 0 0 1 1 1 0 Vicilin N terminal region | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:123839-124896 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~123839-124896 PsbP PF01789.11 g68504.t1 - 0.013 14.9 0.1 0.73 9.2 0 2.3 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold2213_contigs=11, transcript_loc=scaffold2213_contigs=11:36497-38320 Augustus predicted protein sequence Tomato scaffold2213_contigs=11~36497-38320 RVT_3 PF13456.1 g83844.t1 - 0.07 12.9 0 0.1 12.3 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2042518-2042883 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~2042518-2042883 DUF4047 PF13256.1 g22243.t1 - 0.68 9.9 4.3 27 4.7 2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4047) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:170114-171130 Augustus predicted protein sequence Tomato scaffold825_contigs=10~170114-171130 DUF1515 PF07439.6 g65603.t1 - 0.0011 18.7 0.3 0.0022 17.8 0.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1515) | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:104728-105679 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~104728-105679 PADR1 PF08063.7 g32531.t1 - 0.25 10.7 0.2 0.25 10.7 0.2 1.9 3 0 0 3 3 3 0 PADR1 (NUC008) domain | Ref_seq=scaffold1106_contigs=3, transcript_loc=scaffold1106_contigs=3:32284-32577 Augustus predicted protein sequence Tomato scaffold1106_contigs=3~32284-32577 G6PD_N PF00479.17 g19723.t1 - 0.063 13.5 0.4 0.11 12.6 0.3 1.4 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:228128-228845 Augustus predicted protein sequence Tomato scaffold757_contigs=4~228128-228845 DUF4164 PF13747.1 g43352.t1 - 0.0009 19.3 1.7 0.0011 19 1.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4164) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:138498-139048 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~138498-139048 Humanin PF15040.1 g84223.t1 - 0.18 11 0.8 0.18 11 0.6 2.1 2 0 0 2 2 2 0 Humanin family | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:192823-194683 Augustus predicted protein sequence Tomato scaffold2765_contigs=1~192823-194683 DUF468 PF04318.7 g51323.t1 - 0.11 13.1 0.1 1.6 9.3 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF468) | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:93581-94990 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~93581-94990 CDC45 PF02724.9 g78433.t1 - 0.00064 17.8 11.1 0.00084 17.5 7.7 1.2 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:227005-229112 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~227005-229112 SF-assemblin PF06705.6 g28958.t1 - 0.045 12.8 0.1 0.22 10.6 0 1.8 2 0 0 2 2 2 0 SF-assemblin/beta giardin | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:928035-928322 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~928035-928322 PGC7_Stella PF15549.1 g6985.t1 - 0.0021 18 0.9 0.005 16.8 0.6 1.6 1 0 0 1 1 1 1 PGC7/Stella/Dppa3 domain | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:80955-85612 Augustus predicted protein sequence Tomato scaffold386_contigs=10~80955-85612 Lsm_C PF14894.1 g71212.t1 - 0.31 10.5 1.7 0.59 9.6 1.2 1.4 1 0 0 1 1 1 0 Lsm C-terminal | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:121698-121955 Augustus predicted protein sequence Tomato scaffold2359_contigs=12~121698-121955 DUF3524 PF12038.3 g19221.t1 - 0.11 12 0 0.13 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3524) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:148130-148516 Augustus predicted protein sequence Tomato scaffold748_contigs=11~148130-148516 Retrotrans_gag PF03732.12 g60578.t1 - 0.061 13.4 0 0.093 12.8 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:97656-98108 Augustus predicted protein sequence Tomato scaffold1955_contigs=3~97656-98108 tRNA_int_endo PF01974.12 g54627.t1 - 0.077 12.8 0 0.11 12.3 0 1.2 1 0 0 1 1 1 0 tRNA intron endonuclease, catalytic C-terminal domain | Ref_seq=scaffold1724_contigs=2, transcript_loc=scaffold1724_contigs=2:37643-39091 Augustus predicted protein sequence Tomato scaffold1724_contigs=2~37643-39091 DUF997 PF06196.7 g16362.t1 - 0.16 11.4 1.2 0.39 10.2 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF997) | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:389536-391318 Augustus predicted protein sequence Tomato scaffold668_contigs=10~389536-391318 THOC7 PF05615.8 g37089.t1 - 0.032 14.4 1.1 0.052 13.8 0.4 1.6 1 1 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:225878-226297 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~225878-226297 TGF_beta_GS PF08515.7 g16387.t1 - 0.22 10.8 1.8 0.37 10.1 1.3 1.3 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:1-147 Augustus predicted protein sequence Tomato scaffold670_contigs=7~1-147 IFP_35_N PF07334.8 g50150.t1 - 0.12 12.4 0.6 0.31 11 0.2 2 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:13625-14499 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~13625-14499 Lentiviral_Tat PF02998.9 g78340.t1 - 0.011 15.5 0.3 0.027 14.3 0.1 1.6 2 0 0 2 2 2 0 Lentiviral Tat protein | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:236015-236430 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~236015-236430 DUF2229 PF09989.4 g85247.t1 - 0.0054 16.2 0.2 0.0088 15.5 0.2 1.2 1 0 0 1 1 1 1 CoA enzyme activase uncharacterised domain (DUF2229) | Ref_seq=scaffold2795_contigs=1, transcript_loc=scaffold2795_contigs=1:90101-92036 Augustus predicted protein sequence Tomato scaffold2795_contigs=1~90101-92036 Mito_fiss_reg PF05308.6 g80076.t1 - 0.04 13.2 1.2 0.046 13 0.8 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:164078-166898 Augustus predicted protein sequence Tomato scaffold2706_contigs=4~164078-166898 EzrA PF06160.7 g30737.t1 - 0.0048 15.1 1 0.0065 14.7 0.7 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:190159-190954 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~190159-190954 Na_H_Exchanger PF00999.16 g7389.t1 - 0.087 11.3 0 0.087 11.3 0 1 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:150788-152058 Augustus predicted protein sequence Tomato scaffold395_contigs=7~150788-152058 DUF2630 PF10944.3 g77459.t1 - 0.089 12.9 0 0.14 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2630) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:429137-430368 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~429137-430368 CAF-1_p150 PF11600.3 g80902.t1 - 0.00078 18.8 23.8 0.001 18.5 16.5 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:237194-237793 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~237194-237793 DUF2464 PF10240.4 g5908.t1 - 0.29 10.4 1.8 0.34 10.2 1.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2464) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:103689-104042 Augustus predicted protein sequence Tomato scaffold344_contigs=14~103689-104042 Gene66 PF02053.10 g3153.t1 - 0.099 12 0.3 0.11 11.9 0.2 1.2 1 0 0 1 1 1 0 Gene 66 (IR5) protein | Ref_seq=scaffold260_contigs=3, transcript_loc=scaffold260_contigs=3:16327-20906 Augustus predicted protein sequence Tomato scaffold260_contigs=3~16327-20906 HAUS-augmin3 PF14932.1 g54185.t1 - 0.015 14.4 1.2 0.018 14.2 0.8 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:208789-210088 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~208789-210088 DUF1985 PF09331.6 g43719.t1 - 0.0000014 28.1 0 0.0000021 27.5 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:132067-133525 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~132067-133525 Cep57_CLD_2 PF14197.1 g48275.t1 - 2.6 8 8.8 0.079 12.9 0.8 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:200227-201784 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~200227-201784 DUF2331 PF10093.4 g76659.t1 - 0.026 13.3 0 0.037 12.8 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2331) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:231658-232020 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~231658-232020 DUF899 PF05988.7 g2917.t1 - 0.066 12.6 0 0.082 12.3 0 1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:104531-105347 Augustus predicted protein sequence Tomato scaffold257_contigs=2~104531-105347 UBN2 PF14223.1 g83335.t1 - 0.0037 17 0 0.0068 16.1 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:109550-112406 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~109550-112406 F-box-like PF12937.2 g56049.t1 - 0.000049 22.9 1.1 0.00014 21.4 0.7 1.8 1 0 0 1 1 1 1 F-box-like | Ref_seq=scaffold1781_contigs=3, transcript_loc=scaffold1781_contigs=3:47586-48449 Augustus predicted protein sequence Tomato scaffold1781_contigs=3~47586-48449 Pap_E4 PF02711.9 g15570.t1 - 0.16 12.7 4.4 0.21 12.4 3 1.1 1 0 0 1 1 1 0 E4 protein | Ref_seq=scaffold634_contigs=5, transcript_loc=scaffold634_contigs=5:83034-84577 Augustus predicted protein sequence Tomato scaffold634_contigs=5~83034-84577 DUF2321 PF10083.4 g51080.t1 - 0.09 12.2 0 0.1 12 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:27277-27624 Augustus predicted protein sequence Tomato scaffold1606_contigs=13~27277-27624 Mu-like_Pro PF10123.4 g37750.t1 - 1.2 8.4 13.3 0.45 9.9 7.4 1.5 1 1 1 2 2 2 0 Mu-like prophage I protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:196857-197547 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~196857-197547 DBD_Tnp_Mut PF03108.10 g30193.t1 - 0.0000083 25.2 0.6 0.0000083 25.2 0.4 1.7 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:182451-188947 Augustus predicted protein sequence Tomato scaffold1039_contigs=7~182451-188947 IceA2 PF05862.6 g67787.t1 - 0.089 12.5 0 0.14 11.9 0 1.3 1 0 0 1 1 1 0 Helicobacter pylori IceA2 protein | Ref_seq=scaffold2195_contigs=2, transcript_loc=scaffold2195_contigs=2:3396-3635 Augustus predicted protein sequence Tomato scaffold2195_contigs=2~3396-3635 DUF1071 PF06378.6 g48024.t1 - 0.046 12.8 0 0.054 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1071) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:385445-385708 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~385445-385708 Ebola_NP PF05505.7 g55154.t1 - 0.014 13.4 1.1 0.016 13.3 0.8 1 1 0 0 1 1 1 0 Ebola nucleoprotein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:11047-11352 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~11047-11352 Exonuc_X-T_C PF08411.5 g57573.t1 - 0.0017 17.4 1.1 0.0028 16.7 0.8 1.3 1 0 0 1 1 1 1 Exonuclease C-terminal | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:210845-211429 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~210845-211429 LRR_6 PF13516.1 g65476.t1 - 5.2 7.4 5.8 3 8.1 0.4 3.2 3 1 0 3 3 3 0 Leucine Rich repeat | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:163923-165566 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~163923-165566 Aromatic_hydrox PF11723.3 g45264.t1 - 0.073 12.3 0.1 0.085 12.1 0.1 1.1 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:565000-565418 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~565000-565418 HALZ PF02183.13 g77825.t1 - 0.013 15.2 8.1 0.06 13 0.2 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:520704-521324 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~520704-521324 zf-CCHC PF00098.18 g75584.t1 - 0.000039 23.3 3.3 0.000085 22.2 2.3 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:145149-145556 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~145149-145556 Retrotrans_gag PF03732.12 g59774.t1 - 0.00041 20.3 2.1 0.00066 19.6 1.4 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:23363-24207 Augustus predicted protein sequence Tomato scaffold1935_contigs=2~23363-24207 GRP PF07172.6 g19990.t1 - 3.9 8 41.6 3400 -1.5 28.8 2.4 1 1 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:154608-155039 Augustus predicted protein sequence Tomato scaffold765_contigs=9~154608-155039 NIT PF08376.5 g45703.t1 - 0.067 12.6 0.2 0.089 12.3 0.1 1.1 1 0 0 1 1 1 0 Nitrate and nitrite sensing | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:436560-438380 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~436560-438380 zf-CCHC PF00098.18 g75148.t1 - 0.00000099 28.4 6 0.0000023 27.2 4.2 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:427358-428188 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~427358-428188 MHCassoc_trimer PF08831.5 g1546.t1 - 0.23 11.3 1.8 0.74 9.7 0.5 2.3 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold208_contigs=2, transcript_loc=scaffold208_contigs=2:18971-20160 Augustus predicted protein sequence Tomato scaffold208_contigs=2~18971-20160 Myc_N PF01056.13 g74174.t1 - 0.0094 15.1 1.3 0.011 14.9 0.9 1.1 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:169777-170172 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~169777-170172 P22_AR_N PF10547.4 g16316.t1 - 0.052 13.3 0 0.092 12.5 0 1.4 1 0 0 1 1 1 0 P22_AR N-terminal domain | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:148417-148950 Augustus predicted protein sequence Tomato scaffold668_contigs=10~148417-148950 SYF2 PF08231.7 g68736.t1 - 0.017 15.2 4.6 0.017 15.2 3.2 2 2 0 0 2 2 2 0 SYF2 splicing factor | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:158233-159300 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~158233-159300 DUF2969 PF11184.3 g43358.t1 - 0.097 12.7 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2969) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:152519-152782 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~152519-152782 ATHILA PF03078.10 g77338.t1 - 0.00000044 28.8 0.1 0.0000005 28.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:63389-63724 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~63389-63724 DUF2183 PF09949.4 g66869.t1 - 0.13 12.2 0 0.21 11.5 0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2183) | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:27979-28605 Augustus predicted protein sequence Tomato scaffold2172_contigs=4~27979-28605 Tropomyosin PF00261.15 g919.t1 - 0.0094 15 0.4 0.012 14.7 0.2 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold181_contigs=1, transcript_loc=scaffold181_contigs=1:16486-16794 Augustus predicted protein sequence Tomato scaffold181_contigs=1~16486-16794 zf-CCHC_4 PF14392.1 g17040.t1 - 0.0015 18.1 1.3 0.0029 17.2 0.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold692_contigs=2, transcript_loc=scaffold692_contigs=2:4879-5508 Augustus predicted protein sequence Tomato scaffold692_contigs=2~4879-5508 NAM-associated PF14303.1 g7145.t1 - 0.000016 25.2 7.8 0.000021 24.9 5.4 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:256141-256680 Augustus predicted protein sequence Tomato scaffold387_contigs=7~256141-256680 DUF4293 PF14126.1 g49698.t1 - 0.055 13.3 0.2 0.088 12.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:12819-13291 Augustus predicted protein sequence Tomato scaffold1548_contigs=4~12819-13291 DBD_Tnp_Mut PF03108.10 g16180.t1 - 0.00011 21.7 0 0.0002 20.8 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold657_contigs=4, transcript_loc=scaffold657_contigs=4:31643-35250 Augustus predicted protein sequence Tomato scaffold657_contigs=4~31643-35250 HrpJ PF07201.6 g5634.t1 - 0.051 13.5 0.1 0.072 13.1 0.1 1.2 1 0 0 1 1 1 0 HrpJ-like domain | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:214682-215123 Augustus predicted protein sequence Tomato scaffold334_contigs=13~214682-215123 PqqD PF05402.7 g569.t1 - 0.036 14 0.1 0.058 13.4 0.1 1.3 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold54_contigs=1, transcript_loc=scaffold54_contigs=1:1282-1758 Augustus predicted protein sequence Tomato scaffold54_contigs=1~1282-1758 Opiods_neuropep PF01160.13 g12645.t1 - 0.13 12 1.5 0.24 11.1 1 1.5 1 0 0 1 1 1 0 Vertebrate endogenous opioids neuropeptide | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:592912-594163 Augustus predicted protein sequence Tomato scaffold556_contigs=11~592912-594163 Histone_HNS PF00816.16 g24400.t1 - 0.16 12.4 5.2 0.36 11.3 3.6 1.5 1 1 0 1 1 1 0 H-NS histone family | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:455375-456714 Augustus predicted protein sequence Tomato scaffold880_contigs=9~455375-456714 RNase_H2-Ydr279 PF09468.5 g46905.t1 - 0.076 12.2 3.6 0.094 11.8 1 1.9 2 0 0 2 2 2 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:618837-620064 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~618837-620064 DUF977 PF06163.6 g68491.t1 - 0.021 14.5 0.4 0.031 13.9 0.3 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:370913-371740 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~370913-371740 Pox_P21 PF05313.7 g50333.t1 - 0.33 10.2 5.4 0.48 9.6 3.8 1.2 1 0 0 1 1 1 0 Poxvirus P21 membrane protein | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:77144-81190 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~77144-81190 zf-DNA_Pol PF08996.5 g25651.t1 - 0.012 15 0.8 0.015 14.6 0.5 1.3 1 1 0 1 1 1 0 DNA Polymerase alpha zinc finger | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:110783-111209 Augustus predicted protein sequence Tomato scaffold930_contigs=4~110783-111209 SnoaL_2 PF12680.2 g87513.t1 - 0.015 15.6 0.1 6.1 7.3 0 2.1 2 0 0 2 2 2 0 SnoaL-like domain | Ref_seq=scaffold3205_contigs=1, transcript_loc=scaffold3205_contigs=1:3222-3703 Augustus predicted protein sequence Tomato scaffold3205_contigs=1~3222-3703 UBN2_2 PF14227.1 g60599.t1 - 0.0032 17 0 0.0047 16.4 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:43135-44747 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~43135-44747 CCDC155 PF14662.1 g31017.t1 - 0.0025 17.4 7.4 0.0042 16.7 5.2 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:322838-324226 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~322838-324226 DBD_Tnp_Mut PF03108.10 g75617.t1 - 5.2E-017 61.1 3.2 2.6E-009 36.5 0.4 2.3 2 0 0 2 2 2 2 MuDR family transposase | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:83879-85388 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~83879-85388 Trypan_PARP PF05887.6 g57653.t1 - 1.2 8.9 8.8 1.9 8.2 6.1 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:158420-164025 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~158420-164025 DUF1398 PF07166.6 g60231.t1 - 0.13 12.1 0.2 12 5.8 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:1585-2931 Augustus predicted protein sequence Tomato scaffold1945_contigs=4~1585-2931 DUF694 PF05107.7 g35640.t1 - 0.051 12.8 0 0.064 12.4 0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF694) | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1091315-1095661 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~1091315-1095661 Tail_tube PF10618.4 g48531.t1 - 0.0012 18.5 0.1 0.0017 18 0 1.3 1 0 0 1 1 1 1 Phage tail tube protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:205497-206837 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~205497-206837 IBV_3A PF03617.8 g60425.t1 - 0.068 12.9 1.3 0.13 11.9 0.9 1.5 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:62783-64631 Augustus predicted protein sequence Tomato scaffold1951_contigs=6~62783-64631 UPF0546 PF10639.4 g58118.t1 - 0.098 12.4 10.6 0.11 12.3 1.7 2.2 1 1 0 2 2 2 0 Uncharacterised protein family UPF0546 | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:69890-74342 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~69890-74342 SH3_2 PF07653.12 g34512.t1 - 0.24 10.9 1 0.49 9.9 0.7 1.5 1 0 0 1 1 1 0 Variant SH3 domain | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:54825-62311 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~54825-62311 LcrG PF07216.7 g52206.t1 - 0.0086 16 0.2 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 LcrG protein | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:49359-50733 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~49359-50733 YopX PF09643.5 g56009.t1 - 0.46 10.4 2.2 6.7 6.6 1.5 2 1 1 0 1 1 1 0 YopX protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:279251-285748 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~279251-285748 Beta-APP PF03494.8 g65449.t1 - 0.1 12 0 0.14 11.6 0 1.2 1 0 0 1 1 1 0 Beta-amyloid peptide (beta-APP) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:18466-18708 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~18466-18708 bZIP_2 PF07716.10 g2683.t1 - 0.04 13.7 2 0.11 12.3 1.4 1.7 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:28759-29172 Augustus predicted protein sequence Tomato scaffold249_contigs=5~28759-29172 Helicase_IV_N PF12462.3 g54567.t1 - 0.047 13.3 0.1 0.075 12.6 0.1 1.3 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:48818-51231 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~48818-51231 O-ag_pol_Wzy PF14296.1 g45468.t1 - 0.092 11.3 0.5 0.11 11 0.3 1.1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:333843-337045 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~333843-337045 PBP_sp32 PF07222.7 g62821.t1 - 0.074 12.2 0.8 0.1 11.7 0.5 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2009_contigs=4, transcript_loc=scaffold2009_contigs=4:14863-16103 Augustus predicted protein sequence Tomato scaffold2009_contigs=4~14863-16103 DUF787 PF05619.6 g7101.t1 - 0.13 10.8 0.1 0.16 10.5 0.1 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF787) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:132809-134387 Augustus predicted protein sequence Tomato scaffold387_contigs=7~132809-134387 DUF1625 PF07787.7 g15284.t1 - 1.7 7.8 4 1.9 7.6 2.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:407160-407363 Augustus predicted protein sequence Tomato scaffold623_contigs=13~407160-407363 zf-piccolo PF05715.8 g64415.t1 - 0.046 13.7 0.1 17 5.5 0 2.7 2 1 0 2 2 2 0 Piccolo Zn-finger | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:24715-25707 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~24715-25707 CaKB PF03185.10 g54965.t1 - 0.077 12.3 0 0.094 12 0 1 1 0 0 1 1 1 0 Calcium-activated potassium channel, beta subunit | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:312130-316091 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~312130-316091 TAT_signal PF10518.4 g71298.t1 - 0.05 13.6 0.3 0.05 13.6 0.2 3.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:209332-209817 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~209332-209817 Nup160 PF11715.3 g51834.t1 - 0.047 11.8 0.1 0.052 11.6 0 1.1 1 0 0 1 1 1 0 Nucleoporin Nup120/160 | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:22564-22923 Augustus predicted protein sequence Tomato scaffold1625_contigs=4~22564-22923 Minor_capsid_3 PF12691.2 g56107.t1 - 0.12 12 0 0.13 11.9 0 1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold1785_contigs=3, transcript_loc=scaffold1785_contigs=3:330-566 Augustus predicted protein sequence Tomato scaffold1785_contigs=3~330-566 Nop14 PF04147.7 g6553.t1 - 0.018 12.9 7.6 0.017 13 5.3 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:120166-120507 Augustus predicted protein sequence Tomato scaffold378_contigs=5~120166-120507 G5 PF07501.7 g82208.t1 - 0.3 11 2.3 17 5.4 0.1 2.4 2 0 0 2 2 2 0 G5 domain | Ref_seq=scaffold2738_contigs=2, transcript_loc=scaffold2738_contigs=2:30055-30786 Augustus predicted protein sequence Tomato scaffold2738_contigs=2~30055-30786 DUF4296 PF14129.1 g52548.t1 - 0.015 15.4 1.2 1.3 9.2 0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4296) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:393852-394959 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~393852-394959 DUF4589 PF15252.1 g82602.t1 - 0.0038 17 0.3 0.0051 16.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4589) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:194600-194980 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~194600-194980 TFIID-31kDa PF02291.10 g12525.t1 - 0.054 13.2 0 0.07 12.9 0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:154164-154767 Augustus predicted protein sequence Tomato scaffold556_contigs=11~154164-154767 APC_CDC26 PF10471.4 g17788.t1 - 0.11 13.2 4 2.2 9 0.2 2.1 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:241144-241401 Augustus predicted protein sequence Tomato scaffold714_contigs=9~241144-241401 Fucose_iso_C PF02952.12 g19057.t1 - 0.036 13.5 0 0.053 13 0 1.2 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:115563-116048 Augustus predicted protein sequence Tomato scaffold743_contigs=3~115563-116048 RMF PF04957.7 g72305.t1 - 0.042 13.5 0.2 0.069 12.8 0.1 1.5 1 0 0 1 1 1 0 Ribosome modulation factor | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1027866-1028135 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1027866-1028135 CCDC144C PF14915.1 g79467.t1 - 0.018 14 7.6 0.026 13.4 5.3 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:155976-160759 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~155976-160759 Pneumo_att_G PF05539.6 g7511.t1 - 2.6 7.3 11.6 3.2 7 8 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:76946-77649 Augustus predicted protein sequence Tomato scaffold403_contigs=6~76946-77649 Mcm10 PF09332.6 g29829.t1 - 0.096 12 0.1 0.13 11.6 0.1 1.1 1 0 0 1 1 1 0 Mcm10 replication factor | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:213154-213966 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~213154-213966 Myc_N PF01056.13 g6463.t1 - 0.0074 15.5 2.3 0.0096 15.1 1.6 1.1 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:14263-16623 Augustus predicted protein sequence Tomato scaffold375_contigs=9~14263-16623 DUF1398 PF07166.6 g87134.t1 - 0.044 13.6 0.1 14 5.6 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:8158-9534 Augustus predicted protein sequence Tomato scaffold2942_contigs=1~8158-9534 TOBE PF03459.12 g7067.t1 - 2 8.5 4 36 4.5 0 3.5 3 2 1 4 4 4 0 TOBE domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:4152-7056 Augustus predicted protein sequence Tomato scaffold387_contigs=7~4152-7056 LEAP-2 PF07359.6 g12340.t1 - 0.059 13 1.3 0.39 10.4 0.5 2.1 2 0 0 2 2 2 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:146066-147206 Augustus predicted protein sequence Tomato scaffold547_contigs=4~146066-147206 eIF3_N PF09440.5 g36841.t1 - 0.034 14.2 0.4 0.042 14 0.3 1.1 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:271075-272588 Augustus predicted protein sequence Tomato scaffold1209_contigs=7~271075-272588 ATHILA PF03078.10 g26112.t1 - 0.011 14.4 0 0.012 14.2 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:58416-58931 Augustus predicted protein sequence Tomato scaffold943_contigs=4~58416-58931 DUF3323 PF11796.3 g15840.t1 - 0.0066 15.7 0.4 0.0091 15.3 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function N-terminus (DUF3323) | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:129199-132013 Augustus predicted protein sequence Tomato scaffold645_contigs=7~129199-132013 FH2 PF02181.18 g53955.t1 - 0.0029 16.5 0.2 0.0036 16.2 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:73570-73983 Augustus predicted protein sequence Tomato scaffold1709_contigs=7~73570-73983 Pex14_N PF04695.8 g64003.t1 - 2 8.4 8.6 11 6 6 1.9 1 1 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:46101-46708 Augustus predicted protein sequence Tomato scaffold2049_contigs=3~46101-46708 FGF PF00167.13 g63555.t1 - 0.035 13.8 0 0.45 10.2 0 2.1 2 0 0 2 2 2 0 Fibroblast growth factor | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:478497-478994 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~478497-478994 Tmemb_55A PF09788.4 g73494.t1 - 0.00062 18.9 2.2 1 8.4 0.1 2.8 1 1 2 3 3 3 2 Transmembrane protein 55A | Ref_seq=scaffold2470_contigs=4, transcript_loc=scaffold2470_contigs=4:11985-12485 Augustus predicted protein sequence Tomato scaffold2470_contigs=4~11985-12485 DUF4406 PF14359.1 g50799.t1 - 0.0048 16.9 0 0.0052 16.8 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:106975-107181 Augustus predicted protein sequence Tomato scaffold1570_contigs=4~106975-107181 CASP_C PF08172.7 g76555.t1 - 0.14 11.1 0.1 0.16 10.9 0 1.1 1 0 0 1 1 1 0 CASP C terminal | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:30298-30567 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~30298-30567 CAF-1_p150 PF11600.3 g2711.t1 - 0.00032 20.1 22.8 0.00032 20.1 15.8 2.9 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:172305-174045 Augustus predicted protein sequence Tomato scaffold249_contigs=5~172305-174045 Vac_ImportDeg PF09783.4 g34579.t1 - 0.011 15.2 0.1 0.023 14.2 0 1.5 1 0 0 1 1 1 0 Vacuolar import and degradation protein | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:339434-340891 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~339434-340891 DUF3073 PF11273.3 g55214.t1 - 8.5 6.9 9.8 17 6 0.2 3 2 1 1 3 3 3 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:405261-406088 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~405261-406088 zf-CCHC_4 PF14392.1 g84065.t1 - 0.011 15.4 2.6 0.017 14.7 1.8 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:273023-278333 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~273023-278333 Activator-TraM PF11657.3 g46632.t1 - 0.07 12.6 0.7 0.17 11.3 0.4 1.6 1 1 0 1 1 1 0 Transcriptional activator TraM | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:684934-685428 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~684934-685428 RVT_2 PF07727.9 g47422.t1 - 0.000078 21.7 0.7 0.00014 20.9 0.2 1.6 2 0 0 2 2 2 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:454164-463436 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~454164-463436 WH2 PF02205.15 g84992.t1 - 0.77 9.4 2.9 16 5.2 0.1 2.5 2 0 0 2 2 2 0 WH2 motif | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:98819-99644 Augustus predicted protein sequence Tomato scaffold2786_contigs=1~98819-99644 NIP_1 PF08995.5 g84001.t1 - 0.038 14.1 0.3 0.045 13.9 0.2 1.1 1 0 0 1 1 1 0 Necrosis inducing protein-1 | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:95895-96119 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~95895-96119 DUF607 PF04678.8 g47974.t1 - 0.75 9.7 5.2 0.97 9.3 3.6 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF607 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:237166-237456 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~237166-237456 Hyd_WA PF06462.7 g86360.t1 - 0.0096 15.5 0.1 6.8 6.4 0 3.1 3 0 0 3 3 3 2 Propeller | Ref_seq=scaffold2854_contigs=1, transcript_loc=scaffold2854_contigs=1:1187-1477 Augustus predicted protein sequence Tomato scaffold2854_contigs=1~1187-1477 MitoNEET_N PF10660.4 g36869.t1 - 0.37 10.6 2 18 5.3 0 2.6 2 1 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:390892-391329 Augustus predicted protein sequence Tomato scaffold1209_contigs=7~390892-391329 Red1 PF07964.6 g13015.t1 - 0.051 11.7 0.3 0.053 11.6 0.2 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:115368-115610 Augustus predicted protein sequence Tomato scaffold562_contigs=3~115368-115610 FTCD_C PF04961.7 g24204.t1 - 0.1 11.9 0.1 0.13 11.6 0.1 1.1 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:630778-631661 Augustus predicted protein sequence Tomato scaffold876_contigs=13~630778-631661 DUF4264 PF14084.1 g56028.t1 - 0.014 14.7 0.1 0.022 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:362114-362410 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~362114-362410 RVT_2 PF07727.9 g71223.t1 - 0.00000029 29.7 0 0.00000039 29.3 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:210708-212772 Augustus predicted protein sequence Tomato scaffold2359_contigs=12~210708-212772 DUF2924 PF11149.3 g21235.t1 - 0.067 13.1 0.3 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2924) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:185816-188197 Augustus predicted protein sequence Tomato scaffold795_contigs=8~185816-188197 Packaging_FI PF14000.1 g85337.t1 - 0.035 14.3 3.8 0.042 14 2.6 1.2 1 0 0 1 1 1 0 DNA packaging protein FI | Ref_seq=scaffold2800_contigs=1, transcript_loc=scaffold2800_contigs=1:37558-37917 Augustus predicted protein sequence Tomato scaffold2800_contigs=1~37558-37917 DUF4219 PF13961.1 g83080.t1 - 0.000057 22.4 0.2 0.00012 21.3 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:137845-138090 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~137845-138090 Vir_act_alpha_C PF10400.4 g6291.t1 - 0.0073 16.6 2.2 0.015 15.6 0.2 1.9 2 0 0 2 2 2 1 Virulence activator alpha C-term | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:157062-157451 Augustus predicted protein sequence Tomato scaffold357_contigs=6~157062-157451 Neisseria_TspB PF05616.8 g41424.t1 - 0.046 12.1 6.4 0.054 11.8 4.4 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:99147-99443 Augustus predicted protein sequence Tomato scaffold1332_contigs=3~99147-99443 Phage_HK97_TLTM PF06120.6 g11520.t1 - 0.0011 18.4 1.3 0.0012 18.3 0.9 1.1 1 0 0 1 1 1 1 Tail length tape measure protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:250936-251709 Augustus predicted protein sequence Tomato scaffold525_contigs=12~250936-251709 PGC7_Stella PF15549.1 g78529.t1 - 0.15 12 1.3 0.22 11.5 0.9 1.2 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:271942-272742 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~271942-272742 Ribosomal_L15e PF00827.12 g67975.t1 - 0.0025 17.3 1.2 0.0045 16.5 0.8 1.3 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:156189-157307 Augustus predicted protein sequence Tomato scaffold2204_contigs=7~156189-157307 OrfB_Zn_ribbon PF07282.6 g6114.t1 - 0.22 11.1 3.8 0.22 11.2 0.4 2.4 2 1 1 3 3 3 0 Putative transposase DNA-binding domain | Ref_seq=scaffold351_contigs=2, transcript_loc=scaffold351_contigs=2:6321-7997 Augustus predicted protein sequence Tomato scaffold351_contigs=2~6321-7997 QLQ PF08880.6 g38056.t1 - 0.6 9.5 9.8 22 4.5 5 2.8 2 1 0 2 2 2 0 QLQ | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:95130-95651 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~95130-95651 DUF4164 PF13747.1 g57235.t1 - 0.0034 17.4 1.2 0.0093 16 0.9 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4164) | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:246939-247587 Augustus predicted protein sequence Tomato scaffold1829_contigs=9~246939-247587 UPF0561 PF10573.4 g68017.t1 - 0.1 12.4 0.2 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:153690-154123 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~153690-154123 Adaptin_binding PF10199.4 g47677.t1 - 0.03 14.5 0.6 0.047 13.9 0.4 1.3 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:117131-117762 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~117131-117762 Lar_restr_allev PF14354.1 g25734.t1 - 0.11 12.7 0.1 0.18 12.1 0 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:71665-75109 Augustus predicted protein sequence Tomato scaffold931_contigs=12~71665-75109 HTH_psq PF05225.11 g77470.t1 - 0.092 12.3 0 0.17 11.4 0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:46855-47154 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~46855-47154 DUF2457 PF10446.4 g70194.t1 - 2.1 6.9 6.3 2.1 6.9 4.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2333_contigs=2, transcript_loc=scaffold2333_contigs=2:15535-17112 Augustus predicted protein sequence Tomato scaffold2333_contigs=2~15535-17112 Pox_A_type_inc PF04508.7 g41865.t1 - 0.0071 16 0 0.0071 16 0 2.4 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:166109-166348 Augustus predicted protein sequence Tomato scaffold1344_contigs=2~166109-166348 MSA-2c PF12238.3 g18432.t1 - 0.44 10.1 3.8 0.67 9.5 2.6 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:22034-23214 Augustus predicted protein sequence Tomato scaffold724_contigs=4~22034-23214 zf-MYND PF01753.13 g22495.t1 - 0.082 12.7 8 0.27 11.1 5.6 2 1 0 0 1 1 1 0 MYND finger | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:82434-92679 Augustus predicted protein sequence Tomato scaffold831_contigs=10~82434-92679 PPDK_N PF01326.14 g38716.t1 - 0.12 11.3 0 0.13 11.2 0 1 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:113344-114450 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~113344-114450 Ribosomal_L50 PF10501.4 g10828.t1 - 0.012 15.5 0 0.017 15 0 1.4 1 1 0 1 1 1 0 Ribosomal subunit 39S | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:251678-252541 Augustus predicted protein sequence Tomato scaffold507_contigs=4~251678-252541 GRP PF07172.6 g53236.t1 - 0.002 18.5 0 0.002 18.5 0 4.2 2 1 1 3 3 3 1 Glycine rich protein family | Ref_seq=scaffold1685_contigs=26, transcript_loc=scaffold1685_contigs=26:448580-449828 Augustus predicted protein sequence Tomato scaffold1685_contigs=26~448580-449828 CKAP2_C PF15297.1 g5699.t1 - 0.078 11.7 0 0.09 11.5 0 1.1 1 0 0 1 1 1 0 Cytoskeleton-associated protein 2 C-terminus | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:65777-66663 Augustus predicted protein sequence Tomato scaffold337_contigs=4~65777-66663 PBP_sp32 PF07222.7 g15588.t1 - 0.092 11.9 1.8 0.15 11.1 1.3 1.5 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:33242-34273 Augustus predicted protein sequence Tomato scaffold635_contigs=5~33242-34273 Retrotrans_gag PF03732.12 g8306.t1 - 0.0043 17 0 0.0087 16.1 0 1.5 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:338275-339698 Augustus predicted protein sequence Tomato scaffold423_contigs=9~338275-339698 DUF987 PF06174.6 g51968.t1 - 0.076 12.5 0 0.13 11.7 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF987) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:139269-140084 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~139269-140084 T2SK PF03934.8 g1413.t1 - 0.059 12.5 0 1.3 8.1 0 2 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein K | Ref_seq=scaffold201_contigs=2, transcript_loc=scaffold201_contigs=2:9085-9465 Augustus predicted protein sequence Tomato scaffold201_contigs=2~9085-9465 NPR3 PF03666.8 g24020.t1 - 0.0056 15.2 0.3 0.0065 15 0.2 1 1 0 0 1 1 1 1 Nitrogen Permease regulator of amino acid transport activity 3 | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:131862-132197 Augustus predicted protein sequence Tomato scaffold875_contigs=10~131862-132197 UBN2 PF14223.1 g51942.t1 - 0.07 12.9 2.2 0.36 10.6 0 2.8 2 1 1 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:50254-50887 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~50254-50887 UPF0547 PF10571.4 g72321.t1 - 0.054 13.1 0.1 0.26 11 0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1075585-1079069 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1075585-1079069 Mito_fiss_reg PF05308.6 g63045.t1 - 0.051 12.9 3 0.058 12.7 2.1 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2021_contigs=4, transcript_loc=scaffold2021_contigs=4:54269-54934 Augustus predicted protein sequence Tomato scaffold2021_contigs=4~54269-54934 CNPase PF05881.7 g68401.t1 - 0.083 12.2 0 0.093 12.1 0 1.1 1 0 0 1 1 1 0 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:69898-70303 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~69898-70303 Tymo_45kd_70kd PF03251.8 g69665.t1 - 0.084 11.5 0.2 0.11 11.1 0.1 1.1 1 0 0 1 1 1 0 Tymovirus 45/70Kd protein | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:154414-158348 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~154414-158348 Pox_D3 PF04580.8 g69193.t1 - 0.092 11.9 0.6 0.12 11.5 0.4 1.1 1 0 0 1 1 1 0 Chordopoxvirinae D3 protein | Ref_seq=scaffold2262_contigs=5, transcript_loc=scaffold2262_contigs=5:117-1215 Augustus predicted protein sequence Tomato scaffold2262_contigs=5~117-1215 APG6 PF04111.7 g15991.t1 - 2.3 7.1 8.5 3.1 6.7 5.9 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:501035-503993 Augustus predicted protein sequence Tomato scaffold651_contigs=13~501035-503993 Gly-zipper_Omp PF13488.1 g23160.t1 - 0.8 9.3 15.4 2 8.1 6.2 2.3 1 1 1 2 2 2 0 Glycine zipper | Ref_seq=scaffold852_contigs=5, transcript_loc=scaffold852_contigs=5:420-2873 Augustus predicted protein sequence Tomato scaffold852_contigs=5~420-2873 DUF4094 PF13334.1 g2533.t1 - 0.021 15.1 0.1 0.037 14.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:17461-17778 Augustus predicted protein sequence Tomato scaffold243_contigs=2~17461-17778 DUF2786 PF10979.3 g20250.t1 - 0.65 9.7 0 0.65 9.7 0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2786) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:423278-424060 Augustus predicted protein sequence Tomato scaffold768_contigs=4~423278-424060 Trypan_PARP PF05887.6 g34744.t1 - 0.002 17.9 7.5 0.0022 17.7 5.2 1.2 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:3655-4190 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~3655-4190 Dicer_dimer PF03368.9 g6232.t1 - 0.026 14.2 0.1 2.9 7.7 0 2.2 2 0 0 2 2 2 0 Dicer dimerisation domain | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:67181-67720 Augustus predicted protein sequence Tomato scaffold355_contigs=5~67181-67720 TMPIT PF07851.8 g74072.t1 - 0.067 12.2 0.1 0.084 11.9 0.1 1.1 1 0 0 1 1 1 0 TMPIT-like protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:393400-394526 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~393400-394526 zf-C5HC2 PF02928.11 g8706.t1 - 0.085 12.9 0.1 0.29 11.2 0 2 2 0 0 2 2 2 0 C5HC2 zinc finger | Ref_seq=scaffold433_contigs=4, transcript_loc=scaffold433_contigs=4:8359-14611 Augustus predicted protein sequence Tomato scaffold433_contigs=4~8359-14611 7TM_GPCR_Srab PF10292.4 g20551.t1 - 0.02 13.5 0.1 0.025 13.2 0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR receptor class ab chemoreceptor | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1097687-1098136 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1097687-1098136 DUF4632 PF15451.1 g38181.t1 - 1.9 8.4 4.3 2.2 8.2 2.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4632) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:467445-468918 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~467445-468918 Sigma70_ECF PF07638.6 g9605.t1 - 0.97 9 0 0.97 9 0 2.1 1 1 1 2 2 2 0 ECF sigma factor | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:148451-149616 Augustus predicted protein sequence Tomato scaffold462_contigs=7~148451-149616 NAM-associated PF14303.1 g75445.t1 - 0.27 11.5 11.3 0.33 11.2 7.8 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2596_contigs=6, transcript_loc=scaffold2596_contigs=6:35304-35630 Augustus predicted protein sequence Tomato scaffold2596_contigs=6~35304-35630 ATHILA PF03078.10 g10573.t1 - 0.00014 20.6 0 0.00019 20.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:4172-4948 Augustus predicted protein sequence Tomato scaffold501_contigs=2~4172-4948 IncA PF04156.9 g81414.t1 - 0.0025 17.4 3 0.0035 16.9 2.1 1.2 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:43439-45006 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~43439-45006 DUF581 PF04570.9 g43943.t1 - 0.0000026 26.6 0 0.0000026 26.6 0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF581) | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:42768-55388 Augustus predicted protein sequence Tomato scaffold1397_contigs=9~42768-55388 Peptidase_M74 PF03411.8 g65322.t1 - 0.094 11.9 0.1 0.14 11.3 0 1.2 1 0 0 1 1 1 0 Penicillin-insensitive murein endopeptidase | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:135241-138858 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~135241-138858 IncA PF04156.9 g67803.t1 - 0.083 12.4 1 0.12 11.9 0.7 1.3 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:39326-42005 Augustus predicted protein sequence Tomato scaffold2197_contigs=7~39326-42005 DUF3987 PF13148.1 g65889.t1 - 0.019 13.5 0.1 0.022 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:42684-43162 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~42684-43162 bZIP_1 PF00170.16 g70326.t1 - 0.026 14.4 2.5 0.026 14.4 1.7 2.5 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:500245-501079 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~500245-501079 DUF506 PF04720.7 g75385.t1 - 0.013 15.1 4.4 0.84 9.2 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF506) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:213769-215428 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~213769-215428 Transposase_28 PF04195.7 g57729.t1 - 0.024 13.9 0.2 0.33 10.2 0 2.2 2 0 0 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:429224-430337 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~429224-430337 Tox-ODYAM1 PF15642.1 g3454.t1 - 0.0071 15 0.6 0.0085 14.7 0.4 1.1 1 0 0 1 1 1 1 Toxin in Odyssella and Amoebophilus | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:45309-46427 Augustus predicted protein sequence Tomato scaffold272_contigs=1~45309-46427 Spc7 PF08317.6 g60506.t1 - 0.00029 19.5 4.1 0.00038 19.2 2.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:10607-11940 Augustus predicted protein sequence Tomato scaffold1954_contigs=4~10607-11940 FAM47 PF14642.1 g5184.t1 - 0.014 14.7 2.5 0.015 14.5 1.8 1.1 1 0 0 1 1 1 0 FAM47 family | Ref_seq=scaffold318_contigs=3, transcript_loc=scaffold318_contigs=3:115458-115712 Augustus predicted protein sequence Tomato scaffold318_contigs=3~115458-115712 FdhD-NarQ PF02634.10 g38705.t1 - 0.052 12.9 0 0.06 12.7 0 1.1 1 0 0 1 1 1 0 FdhD/NarQ family | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:76245-77293 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~76245-77293 VEFS-Box PF09733.4 g19706.t1 - 4.5 6.9 4.6 0.82 9.3 0.1 1.9 2 0 0 2 2 2 0 VEFS-Box of polycomb protein | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:164913-165512 Augustus predicted protein sequence Tomato scaffold757_contigs=4~164913-165512 Daxx PF03344.10 g7418.t1 - 0.013 13.9 14 0.017 13.6 9.7 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:277051-277635 Augustus predicted protein sequence Tomato scaffold395_contigs=7~277051-277635 GP41 PF00517.12 g21361.t1 - 0.12 11.9 4.3 0.14 11.6 3 1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:14401-14682 Augustus predicted protein sequence Tomato scaffold798_contigs=6~14401-14682 PGC7_Stella PF15549.1 g82651.t1 - 0.1 12.5 1 0.17 11.8 0.7 1.3 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:382243-383422 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~382243-383422 IFP_35_N PF07334.8 g78307.t1 - 0.0054 16.6 1.5 0.0097 15.8 0.5 1.9 2 0 0 2 2 2 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:94513-94875 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~94513-94875 Nepo_coat_N PF03689.10 g86030.t1 - 0.13 11.9 0 0.2 11.4 0 1.2 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain | Ref_seq=scaffold2833_contigs=1, transcript_loc=scaffold2833_contigs=1:22771-23328 Augustus predicted protein sequence Tomato scaffold2833_contigs=1~22771-23328 FAD-oxidase_C PF02913.14 g21032.t1 - 0.1 11.9 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain | Ref_seq=scaffold786_contigs=8, transcript_loc=scaffold786_contigs=8:191682-191975 Augustus predicted protein sequence Tomato scaffold786_contigs=8~191682-191975 HTH_12 PF08461.5 g29468.t1 - 0.0057 16.3 0.4 0.021 14.5 0.2 1.9 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:414037-415046 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~414037-415046 RVT_3 PF13456.1 g45954.t1 - 0.00000011 31.4 0.3 0.0000075 25.6 0 2.2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:370039-370680 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~370039-370680 RNase_H2-Ydr279 PF09468.5 g52483.t1 - 0.0057 15.8 1.5 0.0061 15.7 1.1 1.1 1 0 0 1 1 1 1 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:182484-182810 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~182484-182810 Peptidase_C24 PF03510.9 g44827.t1 - 0.042 14 0 0.055 13.6 0 1.1 1 0 0 1 1 1 0 2C endopeptidase (C24) cysteine protease family | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:141198-141527 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~141198-141527 Band_7_1 PF13421.1 g48283.t1 - 0.11 11.9 0.2 0.2 11.1 0.1 1.5 1 1 0 1 1 1 0 SPFH domain-Band 7 family | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:214662-215533 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~214662-215533 Hepatitis_core PF00906.15 g67275.t1 - 0.063 12.9 0.5 0.086 12.4 0.4 1.2 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:28235-28693 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~28235-28693 CCDC50_N PF15295.1 g17889.t1 - 0.059 13.2 0.2 0.073 12.9 0.2 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus | Ref_seq=scaffold716_contigs=3, transcript_loc=scaffold716_contigs=3:39131-39457 Augustus predicted protein sequence Tomato scaffold716_contigs=3~39131-39457 zf-RVT PF13966.1 g77117.t1 - 2.1E-010 40.7 0.1 2.8E-010 40.3 0 1.2 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2649_contigs=6, transcript_loc=scaffold2649_contigs=6:152864-153847 Augustus predicted protein sequence Tomato scaffold2649_contigs=6~152864-153847 Jnk-SapK_ap_N PF09744.4 g54665.t1 - 0.012 15.6 8.2 0.015 15.3 5.7 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:100402-100713 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~100402-100713 DUF2217 PF10265.4 g20306.t1 - 0.24 10.1 1.2 0.27 9.9 0.9 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) | Ref_seq=scaffold772_contigs=7, transcript_loc=scaffold772_contigs=7:136781-138405 Augustus predicted protein sequence Tomato scaffold772_contigs=7~136781-138405 N-glycanase_C PF09113.5 g21697.t1 - 0.57 9.8 2.7 0.75 9.4 1.8 1.2 1 0 0 1 1 1 0 Peptide-N-glycosidase F, C terminal | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:205905-206234 Augustus predicted protein sequence Tomato scaffold810_contigs=11~205905-206234 DUF3725 PF12523.3 g52898.t1 - 0.074 13.1 5.5 40 4.3 0 5 4 1 1 5 5 5 0 Protein of unknown function (DUF3725) | Ref_seq=scaffold1658_contigs=5, transcript_loc=scaffold1658_contigs=5:1-12455 Augustus predicted protein sequence Tomato scaffold1658_contigs=5~1-12455 Med3 PF11593.3 g80700.t1 - 9.5 5.3 9.4 12 5 6.5 1.1 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:21947-22826 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~21947-22826 Rib_recp_KP_reg PF05104.7 g7158.t1 - 0.89 10 2.9 1.3 9.5 1.9 1.3 1 1 0 1 1 1 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:302021-302341 Augustus predicted protein sequence Tomato scaffold387_contigs=7~302021-302341 OAD_gamma PF04277.8 g43472.t1 - 0.36 11.2 0.1 0.36 11.2 0.1 2.9 2 1 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:172770-174271 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~172770-174271 DUF442 PF04273.8 g26530.t1 - 0.12 12.2 0 0.22 11.3 0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) | Ref_seq=scaffold951_contigs=4, transcript_loc=scaffold951_contigs=4:29859-30560 Augustus predicted protein sequence Tomato scaffold951_contigs=4~29859-30560 Rio2_N PF09202.6 g64426.t1 - 0.07 13.2 0 17 5.5 0 2.3 2 0 0 2 2 2 0 Rio2, N-terminal | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:68382-76077 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~68382-76077 HOOK PF05622.7 g56190.t1 - 0.002 16 0.9 0.0022 15.9 0.6 1 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:11778-12152 Augustus predicted protein sequence Tomato scaffold1793_contigs=8~11778-12152 DUF2422 PF10337.4 g42593.t1 - 0.056 12.2 0.1 0.064 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) | Ref_seq=scaffold1363_contigs=4, transcript_loc=scaffold1363_contigs=4:25166-27276 Augustus predicted protein sequence Tomato scaffold1363_contigs=4~25166-27276 DUF3436 PF11918.3 g10719.t1 - 0.13 12.4 0.4 1.9 8.7 0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3436) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:345544-346494 Augustus predicted protein sequence Tomato scaffold503_contigs=7~345544-346494 DUF1985 PF09331.6 g1276.t1 - 0.000000072 32.3 0 0.00000012 31.5 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:146313-148631 Augustus predicted protein sequence Tomato scaffold195_contigs=3~146313-148631 WEMBL PF05701.6 g14578.t1 - 0.00048 18.7 0.6 0.00057 18.4 0.4 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:203217-205305 Augustus predicted protein sequence Tomato scaffold597_contigs=5~203217-205305 BatA PF07584.6 g50157.t1 - 0.067 13.3 0.1 0.08 13.1 0 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:39902-40162 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~39902-40162 tRNA-synt_1c PF00749.16 g10712.t1 - 0.034 12.7 1 0.035 12.7 0.7 1 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:338232-338558 Augustus predicted protein sequence Tomato scaffold503_contigs=7~338232-338558 IFP_35_N PF07334.8 g23945.t1 - 0.0097 15.8 2.6 0.019 14.9 1.8 1.5 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:216601-218021 Augustus predicted protein sequence Tomato scaffold874_contigs=5~216601-218021 DUF4131 PF13567.1 g35096.t1 - 0.89 8.9 4.3 1.1 8.7 3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:233358-233804 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~233358-233804 zf-BED PF02892.10 g87666.t1 - 0.00000019 30.6 5.7 0.0058 16.3 0.5 2.8 2 0 0 2 2 2 2 BED zinc finger | Ref_seq=scaffold3588_contigs=1, transcript_loc=scaffold3588_contigs=1:1-1258 Augustus predicted protein sequence Tomato scaffold3588_contigs=1~1-1258 DUF3346 PF11826.3 g45905.t1 - 0.045 13.5 0 0.097 12.4 0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3346) | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:143222-143875 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~143222-143875 U-box PF04564.10 g54248.t1 - 0.12 12.3 0 0.15 12 0 1.2 1 0 0 1 1 1 0 U-box domain | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:159348-159722 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~159348-159722 DUF2785 PF10978.3 g47222.t1 - 0.079 12.4 0 0.1 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:265566-265949 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~265566-265949 zf-CCHC PF00098.18 g77824.t1 - 0.0001 22 0.8 0.00015 21.5 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:520377-520661 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~520377-520661 DUF16 PF01519.11 g87410.t1 - 0.02 15 1.9 0.18 12 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function DUF16 | Ref_seq=scaffold3054_contigs=1, transcript_loc=scaffold3054_contigs=1:2881-3768 Augustus predicted protein sequence Tomato scaffold3054_contigs=1~2881-3768 Imm43 PF15602.1 g12973.t1 - 0.053 13.4 0.1 0.062 13.2 0 1.1 1 0 0 1 1 1 0 Immunity protein 43 | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:595242-595583 Augustus predicted protein sequence Tomato scaffold561_contigs=10~595242-595583 DUF2126 PF09899.4 g13750.t1 - 8.4 4.2 10 9.4 4.1 6.9 1 1 0 0 1 1 1 0 Putative amidoligase enzyme (DUF2126) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:31441-34710 Augustus predicted protein sequence Tomato scaffold582_contigs=8~31441-34710 DUF1985 PF09331.6 g23860.t1 - 0.0000014 28.1 0 0.000002 27.6 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:69613-70292 Augustus predicted protein sequence Tomato scaffold871_contigs=9~69613-70292 HEAT_2 PF13646.1 g78085.t1 - 0.095 12.9 0 0.18 12 0 1.8 1 1 0 1 1 1 0 HEAT repeats | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:161733-163819 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~161733-163819 DUF1541 PF07563.6 g76923.t1 - 0.2 11.3 1.3 17 5.1 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1541) | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:34766-35486 Augustus predicted protein sequence Tomato scaffold2642_contigs=12~34766-35486 Vps5 PF09325.5 g71829.t1 - 0.0029 16.8 2.2 0.0034 16.6 1.5 1 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:102461-102715 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~102461-102715 PADR1 PF08063.7 g9516.t1 - 0.0005 19.4 2 0.63 9.4 0 3.4 3 0 0 3 3 3 3 PADR1 (NUC008) domain | Ref_seq=scaffold459_contigs=2, transcript_loc=scaffold459_contigs=2:1986-4875 Augustus predicted protein sequence Tomato scaffold459_contigs=2~1986-4875 Sushi_2 PF09014.5 g38103.t1 - 0.026 14.2 0 0.044 13.5 0 1.4 1 0 0 1 1 1 0 Beta-2-glycoprotein-1 fifth domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:244620-245510 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~244620-245510 DUF2773 PF10971.3 g76708.t1 - 0.027 14.4 0 0.032 14.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2773) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:404354-404554 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~404354-404554 DUF543 PF04418.7 g30026.t1 - 0.05 13.5 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF543) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:249098-254536 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~249098-254536 DUF4578 PF15147.1 g53120.t1 - 0.00081 19.7 0.7 0.8 10 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4578) | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:18750-19660 Augustus predicted protein sequence Tomato scaffold1675_contigs=9~18750-19660 FlxA PF14282.1 g57306.t1 - 0.055 13.4 0.2 0.073 13 0.2 1.1 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:119235-119576 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~119235-119576 DUF4355 PF14265.1 g16382.t1 - 0.022 14.7 9.4 0.034 14 6.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:67616-67987 Augustus predicted protein sequence Tomato scaffold669_contigs=3~67616-67987 bZIP_2 PF07716.10 g8088.t1 - 1.7 8.5 4.9 0.32 10.8 0.6 1.8 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold417_contigs=2, transcript_loc=scaffold417_contigs=2:47976-48305 Augustus predicted protein sequence Tomato scaffold417_contigs=2~47976-48305 DUF3441 PF11923.3 g25967.t1 - 0.038 13.5 0.2 3.3 7.3 0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF3441) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:111202-111932 Augustus predicted protein sequence Tomato scaffold941_contigs=6~111202-111932 Nop16 PF09420.5 g46179.t1 - 0.021 14.9 2.2 0.023 14.8 1.5 1.1 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:334122-334545 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~334122-334545 G0-G1_switch_2 PF15103.1 g16304.t1 - 0.21 11.8 1.1 0.79 9.9 0 2.2 2 0 0 2 2 2 0 G0/G1 switch protein 2 | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:114526-116375 Augustus predicted protein sequence Tomato scaffold668_contigs=10~114526-116375 FNIP_C PF14638.1 g57719.t1 - 0.13 11.5 0.1 0.15 11.4 0.1 1.1 1 0 0 1 1 1 0 Folliculin-interacting protein C-terminus | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:382940-384947 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~382940-384947 Mito_fiss_reg PF05308.6 g29271.t1 - 0.03 13.7 0.2 0.032 13.6 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:146174-146578 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~146174-146578 DUF4164 PF13747.1 g33840.t1 - 0.018 15.1 4.5 0.051 13.6 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:173696-174224 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~173696-174224 Herpes_V23 PF01802.12 g42886.t1 - 0.13 11.2 1.6 0.14 11.1 1.1 1.1 1 0 0 1 1 1 0 Herpesvirus VP23 like capsid protein | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:44430-45067 Augustus predicted protein sequence Tomato scaffold1375_contigs=5~44430-45067 PepSY_TM_3 PF13706.1 g68466.t1 - 0.0063 15.8 1 0.0063 15.8 0.7 1.8 2 0 0 2 2 2 1 PepSY-associated TM helix | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:316075-316377 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~316075-316377 AraC_N PF06719.8 g10940.t1 - 0.022 14 0.1 0.66 9.2 0 2.1 1 1 1 2 2 2 0 AraC-type transcriptional regulator N-terminus | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:2478-3993 Augustus predicted protein sequence Tomato scaffold510_contigs=5~2478-3993 Peptidase_S49_N PF08496.5 g62169.t1 - 2.6 7.8 5.7 4 7.2 3.9 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:190376-191191 Augustus predicted protein sequence Tomato scaffold1984_contigs=7~190376-191191 DUF1399 PF07173.7 g999.t1 - 0.017 15.3 1.7 0.029 14.6 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1399) | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:141412-142189 Augustus predicted protein sequence Tomato scaffold184_contigs=2~141412-142189 Dimer_Tnp_hAT PF05699.9 g72213.t1 - 2.3E-010 39.9 0.1 4.7E-010 38.9 0 1.5 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:661363-662093 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~661363-662093 UBN2 PF14223.1 g14382.t1 - 0.0019 17.9 0.1 0.057 13.2 0 2 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:139134-139634 Augustus predicted protein sequence Tomato scaffold594_contigs=19~139134-139634 DUF913 PF06025.7 g7378.t1 - 0.1 11.2 0.3 0.13 11 0.2 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:99924-101276 Augustus predicted protein sequence Tomato scaffold395_contigs=7~99924-101276 CENP-O PF09496.5 g69131.t1 - 0.009 16.2 0.4 0.023 14.9 0.1 1.6 1 1 0 2 2 2 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:117422-117712 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~117422-117712 Pax2_C PF12403.3 g72574.t1 - 0.0016 18.1 2.3 0.16 11.6 0.2 2.2 2 0 0 2 2 2 2 Paired-box protein 2 C terminal | Ref_seq=scaffold2405_contigs=11, transcript_loc=scaffold2405_contigs=11:12969-14176 Augustus predicted protein sequence Tomato scaffold2405_contigs=11~12969-14176 Myb_DNA-bind_2 PF08914.6 g73364.t1 - 0.0097 15.6 0 0.019 14.7 0 1.5 1 0 0 1 1 1 1 Rap1 Myb domain | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:310452-316657 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~310452-316657 SH3BGR PF04908.10 g62691.t1 - 0.0051 16.7 0.2 0.0059 16.5 0.1 1.1 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:397555-397938 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~397555-397938 TPD52 PF04201.10 g20588.t1 - 0.11 12.2 4.8 0.13 11.9 0.8 2.3 2 1 0 2 2 2 0 Tumour protein D52 family | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1195817-1196359 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1195817-1196359 Orexin_rec2 PF03827.8 g11441.t1 - 1 9.4 5.3 9.4 6.3 0.5 3.4 2 1 1 3 3 3 0 Orexin receptor type 2 | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:100780-101695 Augustus predicted protein sequence Tomato scaffold524_contigs=3~100780-101695 DUF648 PF04890.8 g65297.t1 - 0.0034 16.6 1.1 0.0042 16.3 0.8 1 1 0 0 1 1 1 1 Family of unknown function (DUF648) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:54876-55232 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~54876-55232 FlxA PF14282.1 g34611.t1 - 0.098 12.6 4.8 0.051 13.5 1.6 1.7 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:44394-45083 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~44394-45083 Bap31 PF05529.7 g57089.t1 - 2.2 7.6 5.1 3.1 7.2 3.6 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:271115-272218 Augustus predicted protein sequence Tomato scaffold1827_contigs=21~271115-272218 Peptidase_M20 PF01546.23 g63472.t1 - 0.13 11.7 0 0.16 11.4 0 1.2 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:79453-80871 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~79453-80871 DUF977 PF06163.6 g37631.t1 - 0.052 13.2 0.1 0.062 13 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:22614-22937 Augustus predicted protein sequence Tomato scaffold1225_contigs=7~22614-22937 Asp_protease_2 PF13650.1 g77735.t1 - 0.026 14.9 0 0.031 14.7 0 1.3 1 1 0 1 1 1 0 Aspartyl protease | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:183104-183613 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~183104-183613 Seryl_tRNA_N PF02403.17 g35333.t1 - 0.038 14 3.3 0.065 13.2 2.3 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:99040-99468 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~99040-99468 Pou PF00157.12 g76870.t1 - 0.13 11.9 0 0.24 11 0 1.4 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:155882-157770 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~155882-157770 RAP1 PF07218.6 g14835.t1 - 0.043 11.9 0.2 0.037 12.1 0.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:44738-45905 Augustus predicted protein sequence Tomato scaffold607_contigs=8~44738-45905 Adaptin_binding PF10199.4 g59354.t1 - 0.0044 17.2 11 0.012 15.9 7.6 1.7 1 0 0 1 1 1 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:164340-166962 Augustus predicted protein sequence Tomato scaffold1915_contigs=10~164340-166962 Minor_capsid_3 PF12691.2 g87769.t1 - 0.026 14.2 0 0.028 14.1 0 1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold4012_contigs=1, transcript_loc=scaffold4012_contigs=1:447-683 Augustus predicted protein sequence Tomato scaffold4012_contigs=1~447-683 DUF3297 PF11730.3 g23113.t1 - 0.13 11.9 0 0.26 10.9 0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3297) | Ref_seq=scaffold849_contigs=5, transcript_loc=scaffold849_contigs=5:31909-32240 Augustus predicted protein sequence Tomato scaffold849_contigs=5~31909-32240 Diphtheria_C PF02763.9 g77841.t1 - 0.11 11.9 0 0.11 11.8 0 1.1 1 0 0 1 1 1 0 Diphtheria toxin, C domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:575506-576294 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~575506-576294 YdjO PF14169.1 g17667.t1 - 0.09 12.2 0.3 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:92768-93028 Augustus predicted protein sequence Tomato scaffold713_contigs=10~92768-93028 SulA PF03846.9 g28126.t1 - 0.07 12.8 0.1 9.3 5.9 0 2.4 1 1 2 3 3 3 0 Cell division inhibitor SulA | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:48066-48362 Augustus predicted protein sequence Tomato scaffold992_contigs=3~48066-48362 DUF479 PF04336.7 g86048.t1 - 0.1 12.6 0.1 0.16 12 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF479 | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:21551-22237 Augustus predicted protein sequence Tomato scaffold2834_contigs=1~21551-22237 Put_Phosphatase PF06888.7 g2391.t1 - 0.0097 15.1 0 0.013 14.6 0 1.1 1 0 0 1 1 1 1 Putative Phosphatase | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:27743-30277 Augustus predicted protein sequence Tomato scaffold236_contigs=3~27743-30277 DUF4290 PF14123.1 g4778.t1 - 0.013 14.6 0.1 0.018 14.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:8978-9262 Augustus predicted protein sequence Tomato scaffold308_contigs=4~8978-9262 RUN PF02759.14 g38917.t1 - 0.07 12.8 0 0.07 12.8 0 1.1 1 0 0 1 1 1 0 RUN domain | Ref_seq=scaffold1257_contigs=2, transcript_loc=scaffold1257_contigs=2:38912-40795 Augustus predicted protein sequence Tomato scaffold1257_contigs=2~38912-40795 DUF2744 PF10910.3 g42219.t1 - 0.013 15.3 0.1 0.027 14.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2744) | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:138211-140189 Augustus predicted protein sequence Tomato scaffold1349_contigs=8~138211-140189 TOBE PF03459.12 g52293.t1 - 0.12 12.4 0.1 0.91 9.6 0 2 1 1 1 2 2 2 0 TOBE domain | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:242495-243358 Augustus predicted protein sequence Tomato scaffold1637_contigs=18~242495-243358 AA_permease PF00324.16 g59755.t1 - 0.13 10.5 0.2 0.17 10.2 0.1 1.1 1 0 0 1 1 1 0 Amino acid permease | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:211212-212286 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~211212-212286 zf-RVT PF13966.1 g72504.t1 - 0.0002 21.5 0 0.00034 20.8 0 1.4 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:9909-12018 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~9909-12018 Lebercilin PF15619.1 g2776.t1 - 0.018 14.5 0.2 0.018 14.4 0.1 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:36452-36718 Augustus predicted protein sequence Tomato scaffold254_contigs=6~36452-36718 AstE_AspA PF04952.9 g28442.t1 - 0.0052 15.7 0 0.0059 15.5 0 1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:52758-53036 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~52758-53036 Rrf2 PF02082.15 g72721.t1 - 0.15 12.1 0 0.31 11.1 0 1.5 2 0 0 2 2 2 0 Transcriptional regulator | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:526053-526328 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~526053-526328 DUF2367 PF10164.4 g87139.t1 - 0.04 13.7 3.2 0.046 13.5 2.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2367) | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:14070-14342 Augustus predicted protein sequence Tomato scaffold2942_contigs=1~14070-14342 HHV6-IE PF03753.8 g22138.t1 - 0.016 12.6 2.5 0.017 12.6 1.7 1 1 0 0 1 1 1 0 Human herpesvirus 6 immediate early protein | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:17043-17381 Augustus predicted protein sequence Tomato scaffold823_contigs=8~17043-17381 DUF3070 PF11270.3 g79503.t1 - 1.7 8.5 9.7 3.9 7.3 0.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:60716-63505 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~60716-63505 Arena_glycoprot PF00798.13 g36441.t1 - 0.053 11.9 3.3 0.061 11.7 2.3 1 1 0 0 1 1 1 0 Arenavirus glycoprotein | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:575049-575537 Augustus predicted protein sequence Tomato scaffold1193_contigs=15~575049-575537 Retrotrans_gag PF03732.12 g27907.t1 - 0.0003 20.8 0.1 0.00039 20.4 0 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:73811-77723 Augustus predicted protein sequence Tomato scaffold987_contigs=6~73811-77723 TMA7 PF09072.5 g58798.t1 - 6 7.4 7.4 0.26 11.7 0.9 1.9 2 0 0 2 2 2 0 Translation machinery associated TMA7 | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:288712-290686 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~288712-290686 MCPVI PF02993.9 g17765.t1 - 0.29 11.2 5.3 1 9.4 0.4 2.2 1 1 1 2 2 2 0 Minor capsid protein VI | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:167520-170920 Augustus predicted protein sequence Tomato scaffold714_contigs=9~167520-170920 PPC PF04151.10 g23702.t1 - 0.071 14 1.2 0.089 13.7 0.8 1.2 1 0 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:88588-88860 Augustus predicted protein sequence Tomato scaffold865_contigs=7~88588-88860 FAD_binding_9 PF08021.6 g4757.t1 - 0.089 12.7 0 0.098 12.6 0 1.2 1 0 0 1 1 1 0 Siderophore-interacting FAD-binding domain | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:100831-101091 Augustus predicted protein sequence Tomato scaffold307_contigs=2~100831-101091 CDC45 PF02724.9 g38095.t1 - 0.014 13.4 13.5 0.02 12.9 9.3 1.3 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:227141-227962 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~227141-227962 Lzipper-MIP1 PF14389.1 g58850.t1 - 0.057 13.5 0.1 0.097 12.7 0 1.3 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:60294-60794 Augustus predicted protein sequence Tomato scaffold1877_contigs=4~60294-60794 DBD_Tnp_Mut PF03108.10 g15421.t1 - 0.000000076 31.8 0.1 0.000000076 31.8 0 1.5 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:472871-473590 Augustus predicted protein sequence Tomato scaffold624_contigs=9~472871-473590 CENP-F_leu_zip PF10473.4 g18786.t1 - 0.0026 17.6 4.2 0.003 17.4 2.9 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:476854-477114 Augustus predicted protein sequence Tomato scaffold731_contigs=13~476854-477114 DUF1860 PF08949.5 g37854.t1 - 0.086 12.4 0 0.11 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1860) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:70766-71203 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~70766-71203 TrkA_C PF02080.16 g52436.t1 - 0.028 13.9 0 0.083 12.4 0 1.7 2 0 0 2 2 2 0 TrkA-C domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:39247-42108 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~39247-42108 Bac_globin PF01152.16 g42024.t1 - 0.03 14.3 0.8 0.11 12.5 0 1.9 2 0 0 2 2 2 0 Bacterial-like globin | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:236956-237603 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~236956-237603 BRE1 PF08647.6 g12597.t1 - 0.033 14.1 6.7 0.028 14.3 3.5 1.7 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:363038-363556 Augustus predicted protein sequence Tomato scaffold556_contigs=11~363038-363556 CENP-R PF06729.7 g43214.t1 - 0.029 14 2.2 0.055 13.1 1.5 1.6 1 0 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:146729-147800 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~146729-147800 DUF2215 PF10225.4 g870.t1 - 0.072 12.5 1.4 0.092 12.1 1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold170_contigs=1, transcript_loc=scaffold170_contigs=1:7562-7993 Augustus predicted protein sequence Tomato scaffold170_contigs=1~7562-7993 zf-CCHC PF00098.18 g78236.t1 - 0.00025 20.8 0.8 0.00047 19.9 0.6 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:612618-615739 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~612618-615739 zf-BED PF02892.10 g19998.t1 - 0.009 15.7 2.1 0.022 14.4 1.4 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:192301-192918 Augustus predicted protein sequence Tomato scaffold765_contigs=9~192301-192918 SidE PF12252.3 g11339.t1 - 0.012 12.9 0.7 0.013 12.8 0.5 1 1 0 0 1 1 1 0 Dot/Icm substrate protein | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:285982-286353 Augustus predicted protein sequence Tomato scaffold523_contigs=15~285982-286353 Nup_retrotrp_bd PF10599.4 g26070.t1 - 0.065 13.8 0.6 0.065 13.8 0.4 1.9 2 0 0 2 2 2 0 Retro-transposon transporting motif | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:352300-352869 Augustus predicted protein sequence Tomato scaffold942_contigs=10~352300-352869 DUF2544 PF11245.3 g59765.t1 - 0.1 11.8 0.1 0.1 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2544) | Ref_seq=scaffold1934_contigs=9, transcript_loc=scaffold1934_contigs=9:11196-11474 Augustus predicted protein sequence Tomato scaffold1934_contigs=9~11196-11474 DUF4219 PF13961.1 g31065.t1 - 0.016 14.5 0 0.03 13.7 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:72791-75288 Augustus predicted protein sequence Tomato scaffold1055_contigs=9~72791-75288 EIAV_Rev PF11129.3 g53152.t1 - 0.0024 17.8 1.8 1.6 8.6 0.1 2.2 2 0 0 2 2 2 2 Rev protein of equine infectious anaemia virus | Ref_seq=scaffold1679_contigs=9, transcript_loc=scaffold1679_contigs=9:18876-24751 Augustus predicted protein sequence Tomato scaffold1679_contigs=9~18876-24751 DUF2264 PF10022.4 g42708.t1 - 0.016 13.9 0.5 0.021 13.4 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:121027-121710 Augustus predicted protein sequence Tomato scaffold1370_contigs=2~121027-121710 Orthopox_F8 PF05886.6 g32434.t1 - 0.12 12.2 0.6 0.12 12.2 0.4 1.9 2 0 0 2 2 2 0 Orthopoxvirus F8 protein | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:234846-235130 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~234846-235130 Herpes_US12 PF05363.7 g52010.t1 - 0.0091 16.4 0.1 0.015 15.8 0.1 1.4 1 0 0 1 1 1 1 Herpesvirus US12 family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:247033-247437 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~247033-247437 TT_ORF1 PF02956.9 g54208.t1 - 4.6 5.5 5.9 5.5 5.3 4.1 1.2 1 0 0 1 1 1 0 TT viral orf 1 | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:19834-21077 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~19834-21077 CDC45 PF02724.9 g28968.t1 - 0.098 10.6 17.1 0.16 9.9 11.8 1.3 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:26828-31512 Augustus predicted protein sequence Tomato scaffold1011_contigs=17~26828-31512 RnaseA PF00074.15 g63821.t1 - 0.068 13.4 0.2 0.094 13 0.1 1.1 1 0 0 1 1 1 0 Pancreatic ribonuclease | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:278214-278901 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~278214-278901 BA14K PF07886.6 g84192.t1 - 0.056 13.1 0.1 0.12 12 0.1 1.6 1 0 0 1 1 1 0 BA14K-like protein | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:114409-114864 Augustus predicted protein sequence Tomato scaffold2765_contigs=1~114409-114864 MRP-S28 PF10213.4 g6824.t1 - 0.014 15.4 5.6 0.026 14.6 3.8 1.5 1 1 0 1 1 1 0 Mitochondrial ribosomal subunit protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:102909-103718 Augustus predicted protein sequence Tomato scaffold383_contigs=3~102909-103718 QLQ PF08880.6 g3455.t1 - 0.88 9 4.2 9.2 5.7 0.7 2.5 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:48915-49292 Augustus predicted protein sequence Tomato scaffold272_contigs=1~48915-49292 IFP_35_N PF07334.8 g35205.t1 - 0.048 13.6 1.6 0.1 12.5 1 1.8 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:663867-664673 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~663867-664673 DUF466 PF04328.8 g47486.t1 - 0.000042 23.2 1.3 0.26 11.1 0.1 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF466) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:116156-117100 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~116156-117100 GRP PF07172.6 g73566.t1 - 0.000002 28.2 147.2 0.000026 24.6 0.3 4.2 1 1 1 2 2 2 1 Glycine rich protein family | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:80453-81722 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~80453-81722 Fib_succ_major PF09603.5 g44697.t1 - 0.1 13 0 0.19 12.2 0 1.3 1 0 0 1 1 1 0 Fibrobacter succinogenes major domain (Fib_succ_major) | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:53660-54187 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~53660-54187 Bap31 PF05529.7 g19873.t1 - 2.8 7.3 5.5 3.7 6.9 3.8 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:156614-157399 Augustus predicted protein sequence Tomato scaffold760_contigs=13~156614-157399 DUF572 PF04502.8 g38810.t1 - 6.1 5.9 8.7 10 5.2 5.8 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:146729-147361 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~146729-147361 Retrotrans_gag PF03732.12 g48307.t1 - 0.00003 24 0.3 0.000067 22.8 0.2 1.5 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:281938-288758 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~281938-288758 VID27 PF08553.5 g55520.t1 - 0.82 7.8 11.1 0.85 7.7 7.7 1 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:510201-510437 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~510201-510437 ATHILA PF03078.10 g75740.t1 - 0.16 10.5 0 0.19 10.3 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:139283-139729 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~139283-139729 DUF1725 PF08333.6 g712.t1 - 0.078 12.3 0.2 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:216849-218255 Augustus predicted protein sequence Tomato scaffold95_contigs=9~216849-218255 Borrelia_orfA PF02414.10 g72435.t1 - 0.0091 15.1 6.5 0.01 14.9 4.5 1.1 1 0 0 1 1 1 1 Borrelia ORF-A | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:49613-50044 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~49613-50044 DUF3188 PF11384.3 g4796.t1 - 0.034 13.7 0.4 0.058 12.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:74403-74730 Augustus predicted protein sequence Tomato scaffold308_contigs=4~74403-74730 Stirrup PF09061.1 g75178.t1 - 0.026 14.4 0 0.038 13.8 0 1.3 1 0 0 1 1 1 0 Stirrup | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:603664-604303 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~603664-604303 MRP-L46 PF11788.3 g4767.t1 - 0.011 16.3 2.9 0.013 16.1 2 1 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:115698-115931 Augustus predicted protein sequence Tomato scaffold307_contigs=2~115698-115931 OEP PF02321.13 g46414.t1 - 1.4 8.5 7.2 2 7.9 5 1.2 1 0 0 1 1 1 0 Outer membrane efflux protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:43093-43731 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~43093-43731 SinI PF08671.5 g35208.t1 - 0.43 10 1.8 3.2 7.2 0 2.4 2 0 0 2 2 2 0 Anti-repressor SinI | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:667593-668129 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~667593-668129 PBP1_TM PF14812.1 g15470.t1 - 0.0067 16.7 1.9 0.0085 16.3 1.3 1.2 1 0 0 1 1 1 1 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold627_contigs=2, transcript_loc=scaffold627_contigs=2:199126-199516 Augustus predicted protein sequence Tomato scaffold627_contigs=2~199126-199516 NESP55 PF06390.7 g69957.t1 - 0.59 9.4 4.9 0.57 9.5 2.7 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:12836-16418 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~12836-16418 zinc_ribbon_2 PF13240.1 g35412.t1 - 0.1 12.1 0.9 0.17 11.3 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:329425-332833 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~329425-332833 Cast PF10174.4 g70636.t1 - 0.047 11.7 0.6 0.061 11.3 0.4 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold2344_contigs=6, transcript_loc=scaffold2344_contigs=6:9404-9700 Augustus predicted protein sequence Tomato scaffold2344_contigs=6~9404-9700 HALZ PF02183.13 g37569.t1 - 0.0000037 26.5 6.1 0.00011 21.8 1.1 2.5 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:224806-225673 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~224806-225673 UBN2_2 PF14227.1 g10228.t1 - 0.00054 19.4 0 0.00098 18.6 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:201386-203801 Augustus predicted protein sequence Tomato scaffold486_contigs=3~201386-203801 HR1 PF02185.11 g19522.t1 - 0.14 11.8 1.8 0.25 11.1 1.2 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold753_contigs=1, transcript_loc=scaffold753_contigs=1:1153-2985 Augustus predicted protein sequence Tomato scaffold753_contigs=1~1153-2985 DUF1569 PF07606.6 g52031.t1 - 0.14 12 0 0.23 11.3 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1569) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:307626-307945 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~307626-307945 Hemopexin PF00045.14 g23174.t1 - 0.0079 15.9 0.5 0.0079 15.9 0.4 1.8 2 0 0 2 2 2 1 Hemopexin | Ref_seq=scaffold853_contigs=13, transcript_loc=scaffold853_contigs=13:59350-59745 Augustus predicted protein sequence Tomato scaffold853_contigs=13~59350-59745 ATP-synt_B PF00430.13 g84442.t1 - 0.73 9.6 15.6 0.84 9.4 10.8 1.1 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:132067-132315 Augustus predicted protein sequence Tomato scaffold2769_contigs=1~132067-132315 MAD PF05557.8 g17951.t1 - 0.019 13 0.5 0.025 12.6 0.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:21911-26233 Augustus predicted protein sequence Tomato scaffold720_contigs=9~21911-26233 UPF0561 PF10573.4 g41355.t1 - 0.013 15.3 4.7 0.038 13.8 3.2 1.8 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:90682-94389 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~90682-94389 EF_assoc_2 PF08356.7 g21698.t1 - 0.0038 16.9 0.1 0.0061 16.2 0.1 1.4 1 0 0 1 1 1 1 EF hand associated | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:211185-211625 Augustus predicted protein sequence Tomato scaffold810_contigs=11~211185-211625 Toprim_4 PF13662.1 g77674.t1 - 0.052 13.5 0 0.057 13.4 0 1 1 0 0 1 1 1 0 Toprim domain | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:397016-397693 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~397016-397693 DUF599 PF04654.7 g21144.t1 - 0.0012 18 1.6 0.0017 17.5 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF599 | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:3165-3476 Augustus predicted protein sequence Tomato scaffold794_contigs=4~3165-3476 DNA_pol_viral_N PF00242.12 g8217.t1 - 0.093 11.7 0.1 0.1 11.5 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:17923-18297 Augustus predicted protein sequence Tomato scaffold422_contigs=2~17923-18297 Exc PF07825.6 g79337.t1 - 0.046 13.4 0.3 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 Excisionase-like protein | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:1-1362 Augustus predicted protein sequence Tomato scaffold2693_contigs=8~1-1362 Vir_act_alpha_C PF10400.4 g60817.t1 - 0.052 13.9 0.1 0.073 13.4 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:449466-449771 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~449466-449771 DUF4543 PF15076.1 g18182.t1 - 0.053 13.5 0 0.12 12.3 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4543) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:645888-650210 Augustus predicted protein sequence Tomato scaffold720_contigs=9~645888-650210 PMP1_2 PF08114.6 g56555.t1 - 0.071 12.6 0.3 0.18 11.3 0.2 1.6 1 0 0 1 1 1 0 ATPase proteolipid family | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:198200-199720 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~198200-199720 Toprim_C_rpt PF13368.1 g19245.t1 - 9.9 6.7 9 16 6 6.2 1.4 1 0 0 1 1 1 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:214651-215255 Augustus predicted protein sequence Tomato scaffold748_contigs=11~214651-215255 DivIC PF04977.10 g25439.t1 - 0.002 17.5 4 0.0031 16.9 1 2.2 2 0 0 2 2 2 1 Septum formation initiator | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:270005-271091 Augustus predicted protein sequence Tomato scaffold928_contigs=4~270005-271091 Imm_superinfect PF14373.1 g17437.t1 - 0.096 12.3 0 0.26 10.9 0 1.7 2 0 0 2 2 2 0 Superinfection immunity protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:26826-27572 Augustus predicted protein sequence Tomato scaffold707_contigs=5~26826-27572 DUF1635 PF07795.6 g42752.t1 - 0.047 13 0 0.075 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:167952-168932 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~167952-168932 Herpes_BLRF2 PF05812.7 g2605.t1 - 0.069 12.9 0.9 0.098 12.4 0.7 1.2 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:57729-60896 Augustus predicted protein sequence Tomato scaffold247_contigs=8~57729-60896 RseA_C PF03873.8 g81128.t1 - 0.063 13.1 0.5 3.6 7.5 0.1 2.4 2 0 0 2 2 2 0 Anti sigma-E protein RseA, C-terminal domain | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:296831-298271 Augustus predicted protein sequence Tomato scaffold2722_contigs=6~296831-298271 DUF2763 PF10961.3 g29357.t1 - 0.33 11.3 11.5 0.49 10.8 8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2763) | Ref_seq=scaffold1021_contigs=20, transcript_loc=scaffold1021_contigs=20:325175-326146 Augustus predicted protein sequence Tomato scaffold1021_contigs=20~325175-326146 DUF3908 PF13048.1 g85571.t1 - 0.093 12.6 0.4 0.098 12.6 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3908) | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:67523-67768 Augustus predicted protein sequence Tomato scaffold2809_contigs=1~67523-67768 Bunya_RdRp PF04196.7 g73795.t1 - 0.015 13.3 0.5 0.018 13 0.4 1 1 0 0 1 1 1 0 Bunyavirus RNA dependent RNA polymerase | Ref_seq=scaffold2508_contigs=3, transcript_loc=scaffold2508_contigs=3:104509-108233 Augustus predicted protein sequence Tomato scaffold2508_contigs=3~104509-108233 DUF1510 PF07423.6 g33827.t1 - 0.19 11 11.6 0.23 10.7 8.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:134622-137283 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~134622-137283 Myc_N PF01056.13 g23371.t1 - 0.46 9.5 6.1 0.52 9.4 4.2 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:1-4685 Augustus predicted protein sequence Tomato scaffold859_contigs=6~1-4685 Med15 PF09606.5 g50031.t1 - 0.16 10 0.3 0.21 9.7 0.2 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal | Ref_seq=scaffold1553_contigs=6, transcript_loc=scaffold1553_contigs=6:4739-8532 Augustus predicted protein sequence Tomato scaffold1553_contigs=6~4739-8532 DUF4628 PF15429.1 g23144.t1 - 0.0036 16.7 1.4 0.0043 16.5 0.9 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4628) | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:9518-9784 Augustus predicted protein sequence Tomato scaffold850_contigs=10~9518-9784 Syntaxin_2 PF14523.1 g74057.t1 - 0.023 14.7 0.2 0.031 14.3 0.1 1.1 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:343106-343426 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~343106-343426 CENP-F_leu_zip PF10473.4 g40208.t1 - 0.023 14.5 5.7 0.026 14.3 3.3 1.5 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:69654-71721 Augustus predicted protein sequence Tomato scaffold1294_contigs=7~69654-71721 Csm1 PF12539.3 g38782.t1 - 0.077 13.4 0 21 5.6 0 2.3 2 0 0 2 2 2 0 Chromosome segregation protein Csm1/Pcs1 | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:704-11309 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~704-11309 NTNH_C PF08470.5 g31855.t1 - 0.0074 15.9 0 0.01 15.5 0 1.1 1 0 0 1 1 1 1 Nontoxic nonhaemagglutinin C-terminal | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:20331-20931 Augustus predicted protein sequence Tomato scaffold1091_contigs=17~20331-20931 GlutR_dimer PF00745.15 g28502.t1 - 0.019 14.8 0.3 0.019 14.8 0.2 1.6 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:181441-181767 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~181441-181767 DNAP_B_exo_N PF08452.5 g40096.t1 - 0.11 11.7 9.1 3 7.1 0 3.2 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:100884-102490 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~100884-102490 DUF1985 PF09331.6 g75019.t1 - 0.00019 21.2 0 0.00029 20.6 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2583_contigs=9, transcript_loc=scaffold2583_contigs=9:5184-6291 Augustus predicted protein sequence Tomato scaffold2583_contigs=9~5184-6291 RVP_2 PF08284.6 g9396.t1 - 0.000000034 33.5 0 0.000000047 33 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:153691-155382 Augustus predicted protein sequence Tomato scaffold455_contigs=9~153691-155382 HD-ZIP_N PF04618.7 g31947.t1 - 0.056 13.9 0.1 0.061 13.8 0.1 1.3 1 0 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:41026-41675 Augustus predicted protein sequence Tomato scaffold1097_contigs=2~41026-41675 TGT_C1 PF14809.1 g70551.t1 - 0.044 13.5 0 0.076 12.8 0 1.4 1 1 0 1 1 1 0 C1 domain of tRNA-guanine transglycosylase dimerisation | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:339891-340211 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~339891-340211 BTK PF00779.14 g65008.t1 - 0.73 9.4 4.4 1.4 8.6 3.1 1.4 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:42941-43759 Augustus predicted protein sequence Tomato scaffold2109_contigs=23~42941-43759 DBD_Tnp_Mut PF03108.10 g76732.t1 - 6.5E-011 41.6 0.1 8.2E-011 41.3 0.1 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:540076-540378 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~540076-540378 DUF4571 PF15137.1 g27558.t1 - 0.039 13.3 0 0.049 13 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4571) | Ref_seq=scaffold981_contigs=14, transcript_loc=scaffold981_contigs=14:99958-100473 Augustus predicted protein sequence Tomato scaffold981_contigs=14~99958-100473 TLP-20 PF06088.6 g87254.t1 - 0.017 14.7 0.2 0.019 14.6 0.2 1 1 0 0 1 1 1 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) | Ref_seq=scaffold2975_contigs=1, transcript_loc=scaffold2975_contigs=1:5994-6311 Augustus predicted protein sequence Tomato scaffold2975_contigs=1~5994-6311 NESP55 PF06390.7 g55280.t1 - 0.014 14.7 1.6 0.014 14.7 1.1 1.5 2 0 0 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:638862-639848 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~638862-639848 MVL PF12151.3 g29322.t1 - 0.018 14.6 0.4 0.026 14.1 0.3 1.2 1 0 0 1 1 1 0 Mannan-binding protein | Ref_seq=scaffold1021_contigs=20, transcript_loc=scaffold1021_contigs=20:65751-66087 Augustus predicted protein sequence Tomato scaffold1021_contigs=20~65751-66087 zf-CCHC_4 PF14392.1 g58390.t1 - 0.053 13.1 0.5 0.12 12.1 0.4 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:2736-3987 Augustus predicted protein sequence Tomato scaffold1861_contigs=7~2736-3987 UBN2 PF14223.1 g52211.t1 - 0.000086 22.3 2.5 0.14 11.9 0.1 2.3 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:76736-77935 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~76736-77935 HrpB1_HrpK PF09613.5 g54217.t1 - 0.047 13.1 0 0.053 13 0 1.1 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:49907-50158 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~49907-50158 UBN2 PF14223.1 g85041.t1 - 0.00000086 28.7 0 0.0000017 27.8 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:82088-85656 Augustus predicted protein sequence Tomato scaffold2788_contigs=1~82088-85656 RALF PF05498.6 g77915.t1 - 0.00096 19.9 1.4 0.013 16.3 1 2 1 1 0 1 1 1 1 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:840725-840976 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~840725-840976 DUF1011 PF06237.7 g52554.t1 - 0.099 12.5 0.7 0.13 12.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1011) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:414826-415092 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~414826-415092 Seryl_tRNA_N PF02403.17 g67523.t1 - 0.0041 17.1 3.6 0.0062 16.5 2.5 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:160514-160945 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~160514-160945 UBN2 PF14223.1 g79324.t1 - 0.038 13.7 0.1 0.052 13.3 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2691_contigs=13, transcript_loc=scaffold2691_contigs=13:3398-4046 Augustus predicted protein sequence Tomato scaffold2691_contigs=13~3398-4046 BRF1 PF07741.8 g83540.t1 - 0.026 14.7 4.9 0.041 14 3.4 1.4 1 0 0 1 1 1 0 Brf1-like TBP-binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:890256-891212 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~890256-891212 DUF4580 PF15162.1 g57508.t1 - 0.092 12.1 0 0.17 11.2 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4580) | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:329690-333866 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~329690-333866 DUF1140 PF06600.6 g77304.t1 - 0.00076 19.5 0 0.71 10 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1140) | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:10604-11128 Augustus predicted protein sequence Tomato scaffold2654_contigs=6~10604-11128 PI-PLC-X PF00388.14 g23035.t1 - 0.074 12.4 0.1 0.53 9.6 0.1 1.9 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:141451-142376 Augustus predicted protein sequence Tomato scaffold846_contigs=10~141451-142376 NAM-associated PF14303.1 g38645.t1 - 0.000056 23.5 1.7 0.000065 23.2 1.2 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:4755-5219 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~4755-5219 DUF3188 PF11384.3 g74977.t1 - 0.031 13.8 9.1 0.73 9.4 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:20060-20941 Augustus predicted protein sequence Tomato scaffold2581_contigs=30~20060-20941 UBN2 PF14223.1 g1120.t1 - 0.022 14.5 0 0.024 14.4 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:148544-148786 Augustus predicted protein sequence Tomato scaffold191_contigs=2~148544-148786 DBD_Tnp_Mut PF03108.10 g19431.t1 - 0.000029 23.5 0.3 0.00004 23.1 0.2 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:510529-510969 Augustus predicted protein sequence Tomato scaffold751_contigs=13~510529-510969 Tropomyosin PF00261.15 g10353.t1 - 0.16 11 1.7 6.3 5.8 0.2 2.1 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:29733-37643 Augustus predicted protein sequence Tomato scaffold495_contigs=2~29733-37643 Vir_act_alpha_C PF10400.4 g52476.t1 - 0.073 13.4 0 0.13 12.6 0 1.4 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:145571-146253 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~145571-146253 BRF1 PF07741.8 g78251.t1 - 0.0055 16.8 0.5 0.0097 16.1 0.4 1.4 1 1 0 1 1 1 1 Brf1-like TBP-binding domain | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:659599-660066 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~659599-660066 Cupin_2 PF07883.6 g48795.t1 - 0.077 12.5 0 0.18 11.3 0 1.6 1 0 0 1 1 1 0 Cupin domain | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:35495-36768 Augustus predicted protein sequence Tomato scaffold1507_contigs=2~35495-36768 rve PF00665.21 g56002.t1 - 0.047 13.8 0 0.084 12.9 0 1.4 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:254929-255943 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~254929-255943 FH2 PF02181.18 g47232.t1 - 0.058 12.2 0.4 0.21 10.4 0.1 1.8 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:290630-291415 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~290630-291415 Daxx PF03344.10 g83277.t1 - 0.071 11.5 11.3 0.079 11.4 7.9 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:105174-108230 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~105174-108230 DBD_Tnp_Mut PF03108.10 g36293.t1 - 0.000084 22 0.2 0.00016 21.1 0.1 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:8742-10731 Augustus predicted protein sequence Tomato scaffold1190_contigs=29~8742-10731 DEC-1_N PF04625.8 g87357.t1 - 1.3 7.6 4.5 1.3 7.5 3.1 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold3015_contigs=1, transcript_loc=scaffold3015_contigs=1:6048-6431 Augustus predicted protein sequence Tomato scaffold3015_contigs=1~6048-6431 DUF1347 PF07079.6 g69354.t1 - 0.012 13.8 0.4 0.02 13.1 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:117705-118439 Augustus predicted protein sequence Tomato scaffold2271_contigs=9~117705-118439 ABC2_membrane_3 PF12698.2 g71052.t1 - 0.0025 16.9 19.6 0.035 13.1 3 2 2 0 0 2 2 2 2 ABC-2 family transporter protein | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:53902-54381 Augustus predicted protein sequence Tomato scaffold2355_contigs=18~53902-54381 MRFAP1 PF15155.1 g71847.t1 - 0.067 13.5 0.2 0.084 13.2 0.1 1.1 1 0 0 1 1 1 0 MORF4 family-associated protein1 | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:54505-54798 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~54505-54798 Vps4_C PF09336.5 g46766.t1 - 0.15 11.9 0.9 0.35 10.7 0.1 1.9 2 1 0 2 2 2 0 Vps4 C terminal oligomerisation domain | Ref_seq=scaffold1488_contigs=1, transcript_loc=scaffold1488_contigs=1:25047-25283 Augustus predicted protein sequence Tomato scaffold1488_contigs=1~25047-25283 Hyd_WA PF06462.7 g47141.t1 - 0.063 12.9 0.4 0.12 12 0.3 1.5 1 0 0 1 1 1 0 Propeller | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:5658-6703 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~5658-6703 DUF4248 PF14053.1 g7915.t1 - 0.11 12 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold410_contigs=1, transcript_loc=scaffold410_contigs=1:2141-2380 Augustus predicted protein sequence Tomato scaffold410_contigs=1~2141-2380 HTH_1 PF00126.22 g78361.t1 - 0.033 13.9 3.5 4 7.2 0.2 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:310572-311994 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~310572-311994 DUF2090 PF09863.4 g39699.t1 - 0.025 13.4 0.5 0.028 13.2 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2090) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:29673-30035 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~29673-30035 DUF4519 PF15012.1 g54729.t1 - 0.0038 17.1 0.2 0.005 16.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4519) | Ref_seq=scaffold1727_contigs=4, transcript_loc=scaffold1727_contigs=4:135478-135747 Augustus predicted protein sequence Tomato scaffold1727_contigs=4~135478-135747 ATG16 PF08614.6 g1290.t1 - 0.00039 20.2 1.8 0.00048 19.9 1.2 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) | Ref_seq=scaffold196_contigs=2, transcript_loc=scaffold196_contigs=2:33632-36254 Augustus predicted protein sequence Tomato scaffold196_contigs=2~33632-36254 DMPK_coil PF08826.5 g12561.t1 - 0.018 14.9 1.3 0.035 13.9 0.9 1.4 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:265239-268821 Augustus predicted protein sequence Tomato scaffold556_contigs=11~265239-268821 zf-CCHC PF00098.18 g75801.t1 - 0.0022 17.8 7.2 0.0044 16.8 5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:56056-57102 Augustus predicted protein sequence Tomato scaffold2611_contigs=18~56056-57102 Retrotrans_gag PF03732.12 g33823.t1 - 0.063 13.3 0.2 0.14 12.2 0.2 1.6 1 1 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:119361-121723 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~119361-121723 Tropomyosin PF00261.15 g77649.t1 - 0.098 11.7 0 0.11 11.5 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:324043-324459 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~324043-324459 DUF1075 PF06388.6 g32866.t1 - 0.017 14.7 3.5 0.12 11.9 2.4 2 1 1 0 1 1 1 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:230308-230649 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~230308-230649 DUF972 PF06156.8 g86575.t1 - 0.0088 16.3 2.4 0.015 15.6 1.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF972) | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:38841-42688 Augustus predicted protein sequence Tomato scaffold2873_contigs=1~38841-42688 DUF1373 PF07117.6 g23457.t1 - 0.13 11.9 0.5 0.16 11.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1373) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:264075-266882 Augustus predicted protein sequence Tomato scaffold859_contigs=6~264075-266882 Cep57_CLD_2 PF14197.1 g35441.t1 - 0.19 11.7 1.6 1.2 9.1 0.2 2.2 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold1180_contigs=1, transcript_loc=scaffold1180_contigs=1:18543-19003 Augustus predicted protein sequence Tomato scaffold1180_contigs=1~18543-19003 DUF3279 PF11682.3 g57286.t1 - 0.057 12.9 0.2 0.08 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:44565-45354 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~44565-45354 DUF2894 PF11445.3 g24922.t1 - 0.026 14.7 5.8 0.55 10.4 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold905_contigs=2, transcript_loc=scaffold905_contigs=2:21677-22913 Augustus predicted protein sequence Tomato scaffold905_contigs=2~21677-22913 zf-BED PF02892.10 g43578.t1 - 0.018 14.7 2 0.035 13.8 1.4 1.5 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:462240-462821 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~462240-462821 ATHILA PF03078.10 g13759.t1 - 0.000011 24.1 0.2 0.000013 24 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:70009-70494 Augustus predicted protein sequence Tomato scaffold582_contigs=8~70009-70494 RVT_3 PF13456.1 g7467.t1 - 0.095 12.4 0 0.13 12 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold400_contigs=4, transcript_loc=scaffold400_contigs=4:46383-46830 Augustus predicted protein sequence Tomato scaffold400_contigs=4~46383-46830 Abdominal-A PF12407.3 g45088.t1 - 0.72 9.4 3.5 0.36 10.4 0.3 2 2 0 0 2 2 2 0 Homeobox protein | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:100539-101318 Augustus predicted protein sequence Tomato scaffold1443_contigs=30~100539-101318 Pox_Ag35 PF03286.9 g15555.t1 - 0.043 13.3 4.2 0.053 13 2.9 1.2 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold633_contigs=1, transcript_loc=scaffold633_contigs=1:3601-4326 Augustus predicted protein sequence Tomato scaffold633_contigs=1~3601-4326 Rad60-SLD PF11976.3 g32905.t1 - 0.11 12.2 0.2 2.9 7.6 0 2.8 3 0 0 3 3 3 0 Ubiquitin-2 like Rad60 SUMO-like | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:343915-344810 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~343915-344810 HALZ PF02183.13 g32867.t1 - 0.074 12.7 0.6 0.2 11.3 0.4 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:230706-231701 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~230706-231701 DpnD-PcfM PF14207.1 g57984.t1 - 0.45 10.2 3.5 0.97 9.2 2.4 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:233673-234128 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~233673-234128 MGAT2 PF05060.9 g67913.t1 - 0.0067 15.3 0 0.0071 15.3 0 1.1 1 0 0 1 1 1 1 N-acetylglucosaminyltransferase II (MGAT2) | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:236069-236425 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~236069-236425 H-kinase_dim PF02895.9 g77331.t1 - 0.025 14.8 0.1 0.031 14.6 0.1 1.2 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:53424-53810 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~53424-53810 Disaggr_repeat PF06848.6 g56403.t1 - 0.023 14.1 0 6.7 6.1 0 2.3 2 0 0 2 2 2 0 Disaggregatase related repeat | Ref_seq=scaffold1803_contigs=8, transcript_loc=scaffold1803_contigs=8:14696-15968 Augustus predicted protein sequence Tomato scaffold1803_contigs=8~14696-15968 HALZ PF02183.13 g77244.t1 - 0.5 10.1 5.7 0.47 10.1 0.8 3 3 0 0 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:111323-112230 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~111323-112230 YvrJ PF12841.2 g48959.t1 - 0.17 11.2 0.3 0.35 10.2 0.2 1.5 1 0 0 1 1 1 0 YvrJ protein family | Ref_seq=scaffold1518_contigs=7, transcript_loc=scaffold1518_contigs=7:12631-14546 Augustus predicted protein sequence Tomato scaffold1518_contigs=7~12631-14546 DUF533 PF04391.7 g19496.t1 - 0.098 12 0.9 0.1 11.9 0.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF533) | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:122836-123117 Augustus predicted protein sequence Tomato scaffold752_contigs=5~122836-123117 Autophagy_Cterm PF10381.4 g75273.t1 - 0.36 9.9 4.2 0.13 11.3 1.2 1.5 2 0 0 2 2 2 0 Autophagocytosis associated protein C-terminal | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:40611-40910 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~40611-40910 Pacifastin_I PF05375.8 g30000.t1 - 0.11 12 0.7 0.24 10.9 0.5 1.5 1 0 0 1 1 1 0 Pacifastin inhibitor (LCMII) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:141043-144294 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~141043-144294 Fiji_64_capsid PF05880.6 g62244.t1 - 0.1 10.9 0 0.11 10.7 0 1 1 0 0 1 1 1 0 Fijivirus 64 kDa capsid protein | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:258465-258725 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~258465-258725 UBN2_3 PF14244.1 g42213.t1 - 0.014 14.9 0 0.016 14.7 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:108261-109640 Augustus predicted protein sequence Tomato scaffold1349_contigs=8~108261-109640 YdjO PF14169.1 g1373.t1 - 0.012 15 0.1 0.024 14 0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:34340-36259 Augustus predicted protein sequence Tomato scaffold200_contigs=3~34340-36259 KAAG1 PF15354.1 g83228.t1 - 0.11 12.8 0 3.5 8 0 2.3 2 0 0 2 2 2 0 Kidney-associated antigen 1 | Ref_seq=scaffold2758_contigs=5, transcript_loc=scaffold2758_contigs=5:186912-190431 Augustus predicted protein sequence Tomato scaffold2758_contigs=5~186912-190431 GNAT_acetyltr_2 PF13718.1 g76569.t1 - 0.0052 16.1 0 0.0058 15.9 0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase 2 | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:95989-97497 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~95989-97497 DUF2722 PF10846.3 g52403.t1 - 0.015 14.3 2 0.015 14.3 1.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2722) | Ref_seq=scaffold1638_contigs=15, transcript_loc=scaffold1638_contigs=15:398261-398719 Augustus predicted protein sequence Tomato scaffold1638_contigs=15~398261-398719 IncA PF04156.9 g40980.t1 - 0.000023 24 5.6 0.000035 23.5 3.9 1.3 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:102263-104743 Augustus predicted protein sequence Tomato scaffold1317_contigs=17~102263-104743 DUF1938 PF09153.5 g26960.t1 - 0.13 12.1 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:14533-14922 Augustus predicted protein sequence Tomato scaffold965_contigs=10~14533-14922 zf-CCHC PF00098.18 g66871.t1 - 0.000024 24 0.6 0.000024 24 0.4 2.2 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:32931-33254 Augustus predicted protein sequence Tomato scaffold2172_contigs=4~32931-33254 DUF2884 PF11101.3 g1107.t1 - 0.045 13.1 0.3 0.07 12.4 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:63805-66380 Augustus predicted protein sequence Tomato scaffold191_contigs=2~63805-66380 Imm13 PF15564.1 g9397.t1 - 0.056 13.1 0 0.078 12.6 0 1.1 1 0 0 1 1 1 0 Immunity protein 13 | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:156033-157243 Augustus predicted protein sequence Tomato scaffold455_contigs=9~156033-157243 SplA PF11132.3 g51308.t1 - 0.11 12.2 0.1 0.19 11.4 0 1.4 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:17794-22150 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~17794-22150 Tropomyosin PF00261.15 g7071.t1 - 0.0007 18.7 1.2 0.00079 18.5 0.8 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:14317-14983 Augustus predicted protein sequence Tomato scaffold387_contigs=7~14317-14983 RNase_H2-Ydr279 PF09468.5 g85445.t1 - 0.26 10.4 8 0.33 10.1 5.6 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2804_contigs=1, transcript_loc=scaffold2804_contigs=1:10611-11439 Augustus predicted protein sequence Tomato scaffold2804_contigs=1~10611-11439 HOOK PF05622.7 g77583.t1 - 0.0075 14.1 0.4 0.01 13.6 0.3 1.2 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:81520-81795 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~81520-81795 EVI2A PF05399.6 g75474.t1 - 2.5 7.2 6.8 9.5 5.4 0.6 2.3 2 0 0 2 2 2 0 Ectropic viral integration site 2A protein (EVI2A) | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:66253-68678 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~66253-68678 Adenyl_cycl_N PF12633.2 g9837.t1 - 0.11 11.9 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:38223-38638 Augustus predicted protein sequence Tomato scaffold476_contigs=10~38223-38638 NODP PF07684.7 g28682.t1 - 0.0082 15.7 0.6 4.3 7 0 2.4 2 0 0 2 2 2 2 NOTCH protein | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:22689-25268 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~22689-25268 VLPT PF07122.6 g32332.t1 - 0.012 15.3 0.8 1.2 8.9 0 2.9 3 0 0 3 3 3 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:206044-206313 Augustus predicted protein sequence Tomato scaffold1103_contigs=14~206044-206313 DUF2320 PF10082.4 g87717.t1 - 0.1 11.3 0.1 0.14 10.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2320) | Ref_seq=scaffold3741_contigs=1, transcript_loc=scaffold3741_contigs=1:1-837 Augustus predicted protein sequence Tomato scaffold3741_contigs=1~1-837 ig PF00047.20 g32179.t1 - 0.043 13.9 0.1 0.069 13.2 0.1 1.5 1 1 0 1 1 1 0 Immunoglobulin domain | Ref_seq=scaffold1100_contigs=3, transcript_loc=scaffold1100_contigs=3:3662-3961 Augustus predicted protein sequence Tomato scaffold1100_contigs=3~3662-3961 DUF771 PF05595.6 g70716.t1 - 0.13 12.1 0.1 10 6 0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF771) | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:95095-97797 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~95095-97797 Imm42 PF15601.1 g1074.t1 - 0.0033 16.8 0 0.0053 16.1 0 1.3 1 0 0 1 1 1 1 Immunity protein 42 | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:7407-8149 Augustus predicted protein sequence Tomato scaffold189_contigs=2~7407-8149 FH2 PF02181.18 g48372.t1 - 0.014 14.3 0.1 0.016 14.1 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:146014-146418 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~146014-146418 DUF2114 PF09887.4 g9323.t1 - 0.067 11.5 0 0.071 11.4 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:14572-15534 Augustus predicted protein sequence Tomato scaffold453_contigs=2~14572-15534 Trypan_PARP PF05887.6 g13223.t1 - 3.7 7.3 18.6 5.3 6.8 12.9 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:38445-39281 Augustus predicted protein sequence Tomato scaffold570_contigs=9~38445-39281 SHS2_Rpb7-N PF03876.12 g19130.t1 - 0.087 12.9 0 21 5.3 0 2.3 2 0 0 2 2 2 0 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | Ref_seq=scaffold745_contigs=9, transcript_loc=scaffold745_contigs=9:23730-28216 Augustus predicted protein sequence Tomato scaffold745_contigs=9~23730-28216 Serglycin PF04360.7 g35735.t1 - 0.27 10.9 1.2 0.25 11 0.9 1.2 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:1-114 Augustus predicted protein sequence Tomato scaffold1183_contigs=24~1-114 DUF2205 PF10224.4 g9610.t1 - 0.033 13.7 0.7 0.17 11.4 0.1 2 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:194674-195006 Augustus predicted protein sequence Tomato scaffold462_contigs=7~194674-195006 DUF3546 PF12066.3 g72684.t1 - 0.061 13.3 3.8 0.097 12.6 2.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3546) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:325719-326804 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~325719-326804 F-box PF00646.28 g20681.t1 - 0.15 11.7 1.2 0.4 10.3 0 2.2 2 1 1 3 3 3 0 F-box domain | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:140175-140751 Augustus predicted protein sequence Tomato scaffold778_contigs=11~140175-140751 TMEM151 PF14857.1 g54117.t1 - 0.16 10.5 0 0.16 10.5 0 1.1 1 0 0 1 1 1 0 TMEM151 family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:13211-13708 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~13211-13708 XhlA PF10779.4 g46093.t1 - 0.59 10 6.5 0.3 11 3.3 1.5 1 1 1 2 2 2 0 Haemolysin XhlA | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:47131-47406 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~47131-47406 Viral_NABP PF05515.6 g17919.t1 - 0.04 14.1 0 0.042 14.1 0 1.1 1 0 0 1 1 1 0 Viral nucleic acid binding | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:144451-144675 Augustus predicted protein sequence Tomato scaffold717_contigs=7~144451-144675 EPO_TPO PF00758.13 g83325.t1 - 0.052 13.1 0.2 0.12 11.9 0 1.6 2 0 0 2 2 2 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:75043-77059 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~75043-77059 RR_TM4-6 PF06459.7 g61322.t1 - 0.35 10.7 15 0.38 10.5 10.4 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:220144-221468 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~220144-221468 UreF PF01730.11 g4770.t1 - 0.057 13.5 0 0.066 13.3 0 1.1 1 0 0 1 1 1 0 UreF | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:143654-146431 Augustus predicted protein sequence Tomato scaffold307_contigs=2~143654-146431 YARHG PF13308.1 g15331.t1 - 0.023 14.2 0.1 0.066 12.7 0.1 1.7 1 1 0 1 1 1 0 YARHG domain | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:133008-138128 Augustus predicted protein sequence Tomato scaffold624_contigs=9~133008-138128 MCD PF05292.6 g78772.t1 - 0.096 11.3 0 0.1 11.2 0 1.1 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:9685-9960 Augustus predicted protein sequence Tomato scaffold2678_contigs=5~9685-9960 Pedibin PF08182.6 g40457.t1 - 0.087 12.3 5 0.12 11.8 0.9 2.7 2 2 0 2 2 2 0 Pedibin/Hym-346 family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:305875-306132 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~305875-306132 K_oxygenase PF13434.1 g35163.t1 - 0.031 13.2 1.3 0.044 12.7 0.9 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:479441-479920 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~479441-479920 MgtE_N PF03448.12 g58629.t1 - 0.081 13.2 2.3 0.14 12.4 1.5 1.3 1 1 0 1 1 1 0 MgtE intracellular N domain | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:26177-26591 Augustus predicted protein sequence Tomato scaffold1866_contigs=5~26177-26591 Clusterin PF01093.12 g28236.t1 - 0.0041 16 0.7 0.0045 15.8 0.5 1 1 0 0 1 1 1 1 Clusterin | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:3675-4016 Augustus predicted protein sequence Tomato scaffold994_contigs=5~3675-4016 zf-RVT PF13966.1 g49082.t1 - 0.00000092 29 0.9 0.0000076 26.1 0 2.2 2 1 0 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:51372-51906 Augustus predicted protein sequence Tomato scaffold1525_contigs=4~51372-51906 UBN2_3 PF14244.1 g77812.t1 - 0.000021 24.1 0.1 0.000023 23.9 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:464790-465374 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~464790-465374 B5 PF03484.10 g27011.t1 - 0.021 14.6 0 5.5 6.8 0 2.5 1 1 1 2 2 2 0 tRNA synthetase B5 domain | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:181796-183608 Augustus predicted protein sequence Tomato scaffold965_contigs=10~181796-183608 DUF3993 PF13158.1 g64897.t1 - 0.021 14.6 0.4 0.032 14 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3993) | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:7497-11011 Augustus predicted protein sequence Tomato scaffold2100_contigs=9~7497-11011 DUF2610 PF11020.3 g85086.t1 - 0.05 13.3 0 0.082 12.7 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:90458-90811 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~90458-90811 SLT_L PF14718.1 g64432.t1 - 0.13 12 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Soluble lytic murein transglycosylase L domain | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:98291-98647 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~98291-98647 Tektin PF03148.9 g85388.t1 - 0.0033 16 0.1 0.0045 15.6 0.1 1.2 1 0 0 1 1 1 1 Tektin family | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:37706-39713 Augustus predicted protein sequence Tomato scaffold2802_contigs=1~37706-39713 DUF1985 PF09331.6 g35492.t1 - 0.00000037 30 0 0.00000081 28.9 0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:229864-234751 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~229864-234751 DUF3951 PF13131.1 g56904.t1 - 0.6 9.9 2.6 1.5 8.6 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3951) | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:35603-35986 Augustus predicted protein sequence Tomato scaffold1822_contigs=5~35603-35986 Joubert PF15392.1 g70018.t1 - 0.15 11.2 1.6 0.16 11.1 1.1 1 1 0 0 1 1 1 0 Joubert syndrome-associated | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:249742-250029 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~249742-250029 PAGK PF15284.1 g73877.t1 - 1.8 8.3 5.3 0.76 9.5 0.6 2.3 1 1 1 2 2 2 0 Phage-encoded virulence factor | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:74021-74368 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~74021-74368 DUF2383 PF09537.5 g68438.t1 - 0.12 12.6 0 0.21 11.8 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:194753-195466 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~194753-195466 DAZAP2 PF11029.3 g82674.t1 - 0.024 15 0.9 0.033 14.6 0.3 1.5 1 1 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:42690-43450 Augustus predicted protein sequence Tomato scaffold2747_contigs=3~42690-43450 Vir_act_alpha_C PF10400.4 g30276.t1 - 0.015 15.6 0 0.018 15.4 0 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:79558-79821 Augustus predicted protein sequence Tomato scaffold1041_contigs=2~79558-79821 IFP_35_N PF07334.8 g74655.t1 - 0.016 15.1 0.3 0.022 14.7 0.2 1.3 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:293759-294237 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~293759-294237 Tropomyosin PF00261.15 g22905.t1 - 0.014 14.4 2 0.018 14.1 1.4 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold837_contigs=1, transcript_loc=scaffold837_contigs=1:87322-87645 Augustus predicted protein sequence Tomato scaffold837_contigs=1~87322-87645 DUF1985 PF09331.6 g69060.t1 - 0.11 12.3 0 0.19 11.5 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:27922-31365 Augustus predicted protein sequence Tomato scaffold2251_contigs=17~27922-31365 Nop14 PF04147.7 g69868.t1 - 0.23 9.3 33.7 0.28 9 23.4 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2311_contigs=3, transcript_loc=scaffold2311_contigs=3:12621-14670 Augustus predicted protein sequence Tomato scaffold2311_contigs=3~12621-14670 NAM-associated PF14303.1 g15210.t1 - 0.00094 19.5 1 0.0011 19.2 0.7 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:206528-206872 Augustus predicted protein sequence Tomato scaffold621_contigs=9~206528-206872 TBCA PF02970.11 g2202.t1 - 0.34 11 7.2 0.67 10 5 1.5 1 0 0 1 1 1 0 Tubulin binding cofactor A | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:182453-182869 Augustus predicted protein sequence Tomato scaffold228_contigs=4~182453-182869 Eclosion PF04736.7 g68918.t1 - 0.056 12.8 0 0.45 9.9 0 2 1 1 1 2 2 2 0 Eclosion hormone | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:91595-91912 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~91595-91912 DUF1347 PF07079.6 g59044.t1 - 0.046 11.9 0.1 0.074 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:72544-73257 Augustus predicted protein sequence Tomato scaffold1892_contigs=29~72544-73257 zf-CCHC PF00098.18 g78559.t1 - 0.000084 22.3 0.8 0.00014 21.5 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:383339-383788 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~383339-383788 Trypan_PARP PF05887.6 g21855.t1 - 0.99 9.2 17.9 1.3 8.8 12.4 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:77153-77428 Augustus predicted protein sequence Tomato scaffold817_contigs=11~77153-77428 ox_reductase_C PF08635.5 g2309.t1 - 0.013 14.9 0 0.024 14.1 0 1.4 1 0 0 1 1 1 0 Putative oxidoreductase C terminal | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:84083-86036 Augustus predicted protein sequence Tomato scaffold234_contigs=2~84083-86036 DBD_Tnp_Mut PF03108.10 g3640.t1 - 1.5E-009 37.2 0.5 2.1E-009 36.7 0.3 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:83536-84198 Augustus predicted protein sequence Tomato scaffold279_contigs=4~83536-84198 CDC45 PF02724.9 g74916.t1 - 0.052 11.5 15.9 0.074 11 11 1.3 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:25948-33595 Augustus predicted protein sequence Tomato scaffold2578_contigs=10~25948-33595 PEGSRP PF07623.6 g50688.t1 - 0.0063 15.7 0.1 0.0063 15.7 0.1 2 2 0 0 2 2 2 1 Protein of unknown function (DUF1584) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:182955-184163 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~182955-184163 Tropomyosin PF00261.15 g27768.t1 - 0.019 14 3.6 0.026 13.6 2.5 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:677550-677948 Augustus predicted protein sequence Tomato scaffold983_contigs=13~677550-677948 Big_2 PF02368.13 g17160.t1 - 0.0059 16.4 0.6 0.0082 16 0.4 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 2) | Ref_seq=scaffold697_contigs=1, transcript_loc=scaffold697_contigs=1:14741-15073 Augustus predicted protein sequence Tomato scaffold697_contigs=1~14741-15073 RFX1_trans_act PF04589.8 g75599.t1 - 0.051 13.3 0 0.051 13.2 0 1.1 1 0 0 1 1 1 0 RFX1 transcription activation region | Ref_seq=scaffold2603_contigs=7, transcript_loc=scaffold2603_contigs=7:40031-40401 Augustus predicted protein sequence Tomato scaffold2603_contigs=7~40031-40401 Med9 PF07544.8 g24030.t1 - 0.074 12.7 0.9 5.2 6.8 0 2.9 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:169528-170569 Augustus predicted protein sequence Tomato scaffold875_contigs=10~169528-170569 zf-CCHC PF00098.18 g28020.t1 - 0.00008 22.3 0.7 0.00021 21 0.5 1.8 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:3379-4506 Augustus predicted protein sequence Tomato scaffold990_contigs=6~3379-4506 PDDEXK_4 PF14281.1 g9341.t1 - 0.039 13.7 0.4 0.055 13.3 0.3 1.3 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:11597-12079 Augustus predicted protein sequence Tomato scaffold455_contigs=9~11597-12079 DUF1985 PF09331.6 g59888.t1 - 0.0008 19.2 0.3 0.018 14.8 0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:130955-131849 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~130955-131849 SH3_9 PF14604.1 g49927.t1 - 0.016 14.8 0 0.048 13.2 0 1.8 2 0 0 2 2 2 0 Variant SH3 domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:639818-641246 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~639818-641246 Birna_VP5 PF03042.9 g26463.t1 - 0.08 12.4 0.4 0.4 10.1 0.1 2 2 0 0 2 2 2 0 Birnavirus VP5 protein | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:104678-105181 Augustus predicted protein sequence Tomato scaffold949_contigs=2~104678-105181 TMEM237 PF15383.1 g48292.t1 - 0.032 13.3 0 0.049 12.7 0 1.2 1 0 0 1 1 1 0 Transmembrane protein 237 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:236606-240588 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~236606-240588 Herpes_UL87 PF03043.9 g39354.t1 - 0.59 8.4 2.6 0.68 8.2 1.8 1 1 0 0 1 1 1 0 Herpesvirus UL87 family | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:33387-34038 Augustus predicted protein sequence Tomato scaffold1269_contigs=10~33387-34038 Troponin-I_N PF11636.3 g69232.t1 - 1.1 9 6.2 3.7 7.3 4.3 1.9 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:116119-116529 Augustus predicted protein sequence Tomato scaffold2263_contigs=12~116119-116529 NAM-associated PF14303.1 g26460.t1 - 0.024 14.9 1 0.029 14.7 0.7 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:95874-96146 Augustus predicted protein sequence Tomato scaffold949_contigs=2~95874-96146 Toxin_32 PF08120.6 g71170.t1 - 0.023 14.2 0 0.069 12.7 0 1.8 1 0 0 1 1 1 0 Tamulustoxin family | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:78803-81256 Augustus predicted protein sequence Tomato scaffold2357_contigs=7~78803-81256 AKAP2_C PF15304.1 g80917.t1 - 1.3 8.5 15.5 1.7 8.2 10.8 1.2 1 0 0 1 1 1 0 A-kinase anchor protein 2 C-terminus | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:282269-282493 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~282269-282493 DUF3391 PF11871.3 g57190.t1 - 0.0044 17.2 0.1 0.0052 16.9 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3391) | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:110645-110908 Augustus predicted protein sequence Tomato scaffold1828_contigs=4~110645-110908 TrbE PF11100.3 g85847.t1 - 0.13 12.1 0 0.22 11.4 0 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold2824_contigs=1, transcript_loc=scaffold2824_contigs=1:13341-15466 Augustus predicted protein sequence Tomato scaffold2824_contigs=1~13341-15466 TraO PF10626.4 g64405.t1 - 0.05 13 0.1 0.078 12.3 0 1.2 1 0 0 1 1 1 0 Conjugative transposon protein TraO | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:447988-448785 Augustus predicted protein sequence Tomato scaffold2060_contigs=14~447988-448785 ATHILA PF03078.10 g21911.t1 - 0.014 14 0 0.7 8.4 0 2 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:256067-257186 Augustus predicted protein sequence Tomato scaffold817_contigs=11~256067-257186 Vitellogenin_N PF01347.17 g40715.t1 - 0.0031 15.8 0.3 0.0036 15.6 0.2 1.2 1 0 0 1 1 1 1 Lipoprotein amino terminal region | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:178921-180021 Augustus predicted protein sequence Tomato scaffold1308_contigs=16~178921-180021 Vir_act_alpha_C PF10400.4 g39309.t1 - 0.094 13 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:385613-385900 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~385613-385900 RuvB_C PF05491.8 g13357.t1 - 0.1 12.2 0 2.6 7.7 0 2.3 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:302180-305750 Augustus predicted protein sequence Tomato scaffold572_contigs=22~302180-305750 EF-hand_6 PF13405.1 g61844.t1 - 0.097 12.6 0 0.17 11.8 0 1.4 1 0 0 1 1 1 0 EF-hand domain | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:47343-47645 Augustus predicted protein sequence Tomato scaffold1978_contigs=4~47343-47645 DUF4219 PF13961.1 g5471.t1 - 0.18 11.2 1.1 0.4 10.1 0.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:18480-18788 Augustus predicted protein sequence Tomato scaffold329_contigs=2~18480-18788 Birna_VP5 PF03042.9 g36542.t1 - 0.15 11.5 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Birnavirus VP5 protein | Ref_seq=scaffold1203_contigs=3, transcript_loc=scaffold1203_contigs=3:28155-28442 Augustus predicted protein sequence Tomato scaffold1203_contigs=3~28155-28442 Spc24 PF08286.6 g29928.t1 - 0.0028 17.3 0.5 2.3 7.9 0 2.2 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:303599-307893 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~303599-307893 DUF4219 PF13961.1 g34672.t1 - 0.017 14.4 0.1 0.038 13.4 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:252389-253249 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~252389-253249 HC2 PF07382.6 g39797.t1 - 0.017 14.9 2.5 0.034 14 1.7 1.5 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:287851-288885 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~287851-288885 Erp_C PF06780.6 g29747.t1 - 0.00051 19.9 1 0.00076 19.3 0.7 1.2 1 0 0 1 1 1 1 Erp protein C-terminus | Ref_seq=scaffold1033_contigs=1, transcript_loc=scaffold1033_contigs=1:47460-48494 Augustus predicted protein sequence Tomato scaffold1033_contigs=1~47460-48494 COLFI PF01410.13 g51145.t1 - 0.064 12.6 0.7 0.091 12.1 0.5 1.2 1 0 0 1 1 1 0 Fibrillar collagen C-terminal domain | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:57105-58654 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~57105-58654 DUF1985 PF09331.6 g11874.t1 - 0.00000063 29.2 0 0.00000078 28.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:141465-145447 Augustus predicted protein sequence Tomato scaffold530_contigs=12~141465-145447 Cloacin_immun PF03513.9 g2682.t1 - 0.13 12.2 0 0.23 11.5 0 1.3 1 0 0 1 1 1 0 Cloacin immunity protein | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:26955-28737 Augustus predicted protein sequence Tomato scaffold249_contigs=5~26955-28737 DUF641 PF04859.7 g9916.t1 - 0.015 15 1.7 0.02 14.6 1.2 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:154639-155222 Augustus predicted protein sequence Tomato scaffold478_contigs=9~154639-155222 NDUF_B8 PF05821.6 g77708.t1 - 0.078 12.6 2.2 0.13 11.9 1.5 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:100457-100951 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~100457-100951 Upf2 PF04050.9 g19556.t1 - 0.02 14.6 2.9 0.02 14.6 2 1.5 2 0 0 2 2 2 0 Up-frameshift suppressor 2 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:1-1460 Augustus predicted protein sequence Tomato scaffold756_contigs=8~1-1460 TP_methylase PF00590.15 g18117.t1 - 0.0061 16.2 0.1 0.01 15.5 0.1 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:471846-472903 Augustus predicted protein sequence Tomato scaffold720_contigs=9~471846-472903 DNA_pol_phi PF04931.8 g10726.t1 - 0.9 7.2 4.4 1.1 6.9 3 1.1 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:377326-379758 Augustus predicted protein sequence Tomato scaffold503_contigs=7~377326-379758 Sec2p PF06428.6 g74967.t1 - 0.00065 19.5 0.5 0.00081 19.1 0.4 1.1 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:180453-180764 Augustus predicted protein sequence Tomato scaffold2580_contigs=9~180453-180764 DUF3763 PF12592.3 g62328.t1 - 0.25 11 1.7 0.59 9.8 0.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3763) | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:43178-43636 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~43178-43636 DUF2219 PF09982.4 g87583.t1 - 0.00000042 29 7.3 1.1 8 0.1 5 4 1 1 5 5 5 5 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold3349_contigs=1, transcript_loc=scaffold3349_contigs=1:1-3374 Augustus predicted protein sequence Tomato scaffold3349_contigs=1~1-3374 GP41 PF00517.12 g6622.t1 - 0.12 11.9 1.3 0.14 11.6 0.9 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:7530-7799 Augustus predicted protein sequence Tomato scaffold380_contigs=11~7530-7799 zf-CCHC PF00098.18 g76682.t1 - 0.054 13.4 5.2 0.054 13.4 3.6 1.8 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:322916-323170 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~322916-323170 ATHILA PF03078.10 g54900.t1 - 0.00000022 29.8 0 0.00000025 29.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:126577-126867 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~126577-126867 HAUS2 PF15003.1 g53307.t1 - 0.15 11 0 0.19 10.7 0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:129918-130442 Augustus predicted protein sequence Tomato scaffold1689_contigs=11~129918-130442 DMPK_coil PF08826.5 g39803.t1 - 0.019 14.8 0.1 0.034 14 0.1 1.4 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:298539-300597 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~298539-300597 DUF1682 PF07946.9 g24037.t1 - 0.031 13.1 5.8 0.03 13.1 4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:178001-178504 Augustus predicted protein sequence Tomato scaffold875_contigs=10~178001-178504 TOBE_3 PF12857.2 g80083.t1 - 0.057 13.2 0 0.094 12.5 0 1.3 1 0 0 1 1 1 0 TOBE-like domain | Ref_seq=scaffold2708_contigs=2, transcript_loc=scaffold2708_contigs=2:24554-24904 Augustus predicted protein sequence Tomato scaffold2708_contigs=2~24554-24904 KRTAP PF11759.3 g72268.t1 - 0.015 15.5 6.9 0.022 14.9 4.8 1.3 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:880774-885534 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~880774-885534 NODP PF07684.7 g1171.t1 - 0.17 11.5 0.8 0.22 11.1 0.5 1.2 1 0 0 1 1 1 0 NOTCH protein | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:49366-49587 Augustus predicted protein sequence Tomato scaffold193_contigs=2~49366-49587 ETF_QO PF05187.8 g50448.t1 - 0.06 13.3 0.5 0.066 13.2 0.3 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:178461-178673 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~178461-178673 DUF4611 PF15387.1 g69056.t1 - 0.036 14.2 2.5 2.5 8.3 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold2247_contigs=2, transcript_loc=scaffold2247_contigs=2:7863-8691 Augustus predicted protein sequence Tomato scaffold2247_contigs=2~7863-8691 DUF1416 PF07210.7 g24061.t1 - 0.036 13.6 0 0.067 12.8 0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1416) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:262369-263433 Augustus predicted protein sequence Tomato scaffold875_contigs=10~262369-263433 Galanin PF01296.13 g25861.t1 - 1.2 9 4.5 6.3 6.7 0.4 2.6 2 1 0 2 2 2 0 Galanin | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:61880-62098 Augustus predicted protein sequence Tomato scaffold937_contigs=20~61880-62098 Plant_tran PF04827.9 g25377.t1 - 0.0012 18.2 0 0.0029 17 0 1.6 1 1 1 2 2 2 1 Plant transposon protein | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:48255-52142 Augustus predicted protein sequence Tomato scaffold928_contigs=4~48255-52142 ATHILA PF03078.10 g39336.t1 - 0.00017 20.3 0 0.00018 20.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:506406-506723 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~506406-506723 Ribosomal_L6e PF01159.14 g73505.t1 - 0.13 12.5 1.3 0.12 12.5 0.4 1.4 1 1 0 1 1 1 0 Ribosomal protein L6e | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:24258-26581 Augustus predicted protein sequence Tomato scaffold2473_contigs=16~24258-26581 DUF3295 PF11702.3 g46642.t1 - 0.19 10.6 3.9 1 8.2 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3295) | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:19393-19941 Augustus predicted protein sequence Tomato scaffold1484_contigs=2~19393-19941 DUF1560 PF07597.6 g72473.t1 - 0.88 9.6 3.2 0.98 9.4 0.1 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1560) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:242680-246163 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~242680-246163 Dimer_Tnp_hAT PF05699.9 g60524.t1 - 0.017 14.7 0 0.031 13.8 0 1.5 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:50882-54830 Augustus predicted protein sequence Tomato scaffold1954_contigs=4~50882-54830 IFP_35_N PF07334.8 g77886.t1 - 0.39 10.7 5.9 0.79 9.7 1.6 2.9 2 1 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:705761-706972 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~705761-706972 Daxx PF03344.10 g44731.t1 - 0.26 9.7 18.8 0.27 9.6 13.1 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:149846-150271 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~149846-150271 RVT_3 PF13456.1 g21313.t1 - 0.06 13.1 0 0.22 11.3 0 2 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:188849-192680 Augustus predicted protein sequence Tomato scaffold797_contigs=11~188849-192680 MscS_porin PF12795.2 g27872.t1 - 0.0062 15.8 0.7 0.0073 15.6 0.5 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain | Ref_seq=scaffold986_contigs=2, transcript_loc=scaffold986_contigs=2:5017-5568 Augustus predicted protein sequence Tomato scaffold986_contigs=2~5017-5568 HALZ PF02183.13 g1067.t1 - 0.00091 18.8 9 0.034 13.8 2.4 2.4 2 0 0 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold187_contigs=1, transcript_loc=scaffold187_contigs=1:13998-14523 Augustus predicted protein sequence Tomato scaffold187_contigs=1~13998-14523 DUF1510 PF07423.6 g16377.t1 - 0.67 9.2 8.4 0.81 9 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:63860-64231 Augustus predicted protein sequence Tomato scaffold669_contigs=3~63860-64231 TPR_20 PF14561.1 g7038.t1 - 0.44 10.6 4.5 0.34 11 1.9 1.7 2 0 0 2 2 2 0 Tetratricopeptide repeat | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:300885-303615 Augustus predicted protein sequence Tomato scaffold386_contigs=10~300885-303615 PBP1_TM PF14812.1 g67401.t1 - 0.04 14.2 1.9 0.051 13.8 1.3 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:106086-106567 Augustus predicted protein sequence Tomato scaffold2183_contigs=22~106086-106567 Peptidase_S76 PF13611.1 g16206.t1 - 0.087 12.9 0.5 0.12 12.5 0.4 1.1 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 | Ref_seq=scaffold660_contigs=2, transcript_loc=scaffold660_contigs=2:342-3350 Augustus predicted protein sequence Tomato scaffold660_contigs=2~342-3350 DUF1265 PF06887.9 g22043.t1 - 0.12 12 0.1 0.21 11.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1265) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:722185-723765 Augustus predicted protein sequence Tomato scaffold817_contigs=11~722185-723765 Nop14 PF04147.7 g74308.t1 - 9.6 3.9 26.3 11 3.8 18.2 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:74572-74949 Augustus predicted protein sequence Tomato scaffold2530_contigs=9~74572-74949 Nucleoplasmin PF03066.10 g32711.t1 - 0.19 11.2 3.4 0.18 11.3 0.4 2.1 2 0 0 2 2 2 0 Nucleoplasmin | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:723361-723792 Augustus predicted protein sequence Tomato scaffold1108_contigs=23~723361-723792 ATHILA PF03078.10 g18149.t1 - 0.000000004 35.5 0.2 0.0000004 28.9 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:556036-556669 Augustus predicted protein sequence Tomato scaffold720_contigs=9~556036-556669 DUF2267 PF10025.4 g43378.t1 - 0.026 14.5 0 0.036 14.1 0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:276846-277277 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~276846-277277 Exo5 PF09810.4 g20206.t1 - 0.0038 16.4 0.1 0.0096 15.1 0 1.7 1 1 0 1 1 1 1 Exonuclease V - a 5' deoxyribonuclease | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:273902-277324 Augustus predicted protein sequence Tomato scaffold768_contigs=4~273902-277324 ATHILA PF03078.10 g2861.t1 - 0.000000063 31.6 0 0.00047 18.8 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:37512-38030 Augustus predicted protein sequence Tomato scaffold256_contigs=5~37512-38030 ATHILA PF03078.10 g19175.t1 - 1.2E-009 37.2 0.5 1.6E-009 36.9 0.3 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:174704-175689 Augustus predicted protein sequence Tomato scaffold746_contigs=6~174704-175689 DUF3020 PF11223.3 g74586.t1 - 0.0031 17.8 0.7 0.0048 17.2 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3020) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:80189-80416 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~80189-80416 DUF2361 PF10153.4 g26250.t1 - 0.032 14.3 0 0.047 13.8 0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2361) | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:300172-301888 Augustus predicted protein sequence Tomato scaffold945_contigs=10~300172-301888 CDI PF02234.14 g71296.t1 - 0.0019 17.9 0.6 0.0019 17.9 0.4 2 2 1 0 2 2 2 1 Cyclin-dependent kinase inhibitor | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:200802-201520 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~200802-201520 Bap31 PF05529.7 g44339.t1 - 0.53 9.7 3.4 0.68 9.3 2.3 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:134619-134999 Augustus predicted protein sequence Tomato scaffold1426_contigs=9~134619-134999 zf-BED PF02892.10 g78957.t1 - 0.12 12.1 0.3 0.25 11.1 0.2 1.6 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2680_contigs=8, transcript_loc=scaffold2680_contigs=8:236306-244106 Augustus predicted protein sequence Tomato scaffold2680_contigs=8~236306-244106 CENP-F_leu_zip PF10473.4 g56003.t1 - 1.2 8.9 12.9 0.22 11.3 1.7 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:257090-257782 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~257090-257782 UPF0547 PF10571.4 g57983.t1 - 0.056 13.1 0.5 0.17 11.5 0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:231075-233585 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~231075-233585 DUF2360 PF10152.4 g71369.t1 - 0.18 12 3.9 0.24 11.6 2.7 1.3 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:710407-710739 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~710407-710739 DUF1117 PF06547.7 g85682.t1 - 0.011 15.8 0.1 0.018 15.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1117) | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:43667-44650 Augustus predicted protein sequence Tomato scaffold2814_contigs=1~43667-44650 PACT_coil_coil PF10495.4 g51309.t1 - 0.05 13.5 0.5 0.14 12 0.4 1.9 1 1 0 1 1 1 0 Pericentrin-AKAP-450 domain of centrosomal targeting protein | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:25094-25701 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~25094-25701 DUF4440 PF14534.1 g1900.t1 - 0.14 12.3 0 0.19 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:47533-47955 Augustus predicted protein sequence Tomato scaffold219_contigs=6~47533-47955 PsbJ PF01788.12 g39708.t1 - 0.00069 19 0.1 0.0015 18 0.1 1.5 1 0 0 1 1 1 1 PsbJ | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:54441-55350 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~54441-55350 Tropomyosin PF00261.15 g20072.t1 - 0.054 12.5 0 0.072 12.1 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:195707-200880 Augustus predicted protein sequence Tomato scaffold767_contigs=5~195707-200880 zf-C4H2 PF10146.4 g5580.t1 - 4.7 7.1 8.3 5.1 7 1.3 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:9139-9804 Augustus predicted protein sequence Tomato scaffold334_contigs=13~9139-9804 Peroxin-22 PF12827.2 g25645.t1 - 0.0098 15.5 2.1 0.55 9.9 0 2.5 2 1 0 2 2 2 2 Peroxisomal biogenesis protein family | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:104077-104757 Augustus predicted protein sequence Tomato scaffold930_contigs=4~104077-104757 DUF2694 PF10904.3 g87258.t1 - 0.00093 19.1 0.1 0.002 18.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2694) | Ref_seq=scaffold2976_contigs=1, transcript_loc=scaffold2976_contigs=1:2208-2933 Augustus predicted protein sequence Tomato scaffold2976_contigs=1~2208-2933 ImmE5 PF11480.3 g19032.t1 - 0.068 12.9 0 0.086 12.6 0 1.3 1 0 0 1 1 1 0 Colicin-E5 Imm protein | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:31928-32182 Augustus predicted protein sequence Tomato scaffold743_contigs=3~31928-32182 IncA PF04156.9 g59740.t1 - 0.025 14.1 3 0.037 13.6 2.1 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:162791-163512 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~162791-163512 PNRC PF15365.1 g11868.t1 - 0.11 12.5 0 0.19 11.7 0 1.3 1 0 0 1 1 1 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:95779-96421 Augustus predicted protein sequence Tomato scaffold530_contigs=12~95779-96421 DIT1_PvcA PF05141.7 g33566.t1 - 0.062 12.5 0.3 0.072 12.3 0.2 1.1 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:139747-140220 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~139747-140220 NCD2 PF04905.8 g28171.t1 - 0.14 11.9 2.8 2.1 8.1 0 2.2 2 0 0 2 2 2 0 NAB conserved region 2 (NCD2) | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:207657-208972 Augustus predicted protein sequence Tomato scaffold992_contigs=3~207657-208972 DUF2894 PF11445.3 g33998.t1 - 0.056 13.7 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold1140_contigs=2, transcript_loc=scaffold1140_contigs=2:12362-13600 Augustus predicted protein sequence Tomato scaffold1140_contigs=2~12362-13600 DUF904 PF06005.7 g25101.t1 - 0.15 12.4 0 0.23 11.7 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:74601-76776 Augustus predicted protein sequence Tomato scaffold914_contigs=7~74601-76776 DUF3049 PF11250.3 g18691.t1 - 0.097 12.4 0.7 0.71 9.6 0.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3049) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:199594-199797 Augustus predicted protein sequence Tomato scaffold731_contigs=13~199594-199797 CFTR_R PF14396.1 g46683.t1 - 0.075 12.3 0.7 0.1 11.9 0.5 1.2 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:23992-24647 Augustus predicted protein sequence Tomato scaffold1485_contigs=2~23992-24647 Avl9 PF09794.4 g19639.t1 - 0.022 13.2 0.2 0.048 12.1 0 1.6 1 1 1 2 2 2 0 Transport protein Avl9 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:260555-262824 Augustus predicted protein sequence Tomato scaffold756_contigs=8~260555-262824 TUDOR PF00567.19 g77739.t1 - 0.061 13.1 0 0.071 12.9 0 1.1 1 0 0 1 1 1 0 Tudor domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:191615-191961 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~191615-191961 CDRT4 PF15213.1 g16470.t1 - 0.11 12.6 1.4 0.16 12 1 1.3 1 0 0 1 1 1 0 CMT1A duplicated region transcript 4 protein | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:203244-210204 Augustus predicted protein sequence Tomato scaffold671_contigs=7~203244-210204 Apolipoprotein PF01442.13 g25464.t1 - 0.018 14.5 6.4 0.021 14.3 4.5 1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:338559-338801 Augustus predicted protein sequence Tomato scaffold928_contigs=4~338559-338801 ATHILA PF03078.10 g61854.t1 - 0.0000017 26.9 0 0.000002 26.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:67296-67580 Augustus predicted protein sequence Tomato scaffold1978_contigs=4~67296-67580 FH2 PF02181.18 g25511.t1 - 0.021 13.7 0.1 0.056 12.3 0 1.6 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:104012-104797 Augustus predicted protein sequence Tomato scaffold929_contigs=9~104012-104797 Filament PF00038.16 g46504.t1 - 0.0023 17.4 8.8 0.33 10.3 0.2 2.2 2 0 0 2 2 2 2 Intermediate filament protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:296714-299350 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~296714-299350 ERM PF00769.14 g68279.t1 - 0.0056 16.2 2.2 0.0079 15.7 1.6 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:115664-116014 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~115664-116014 UBN2 PF14223.1 g6698.t1 - 0.0062 16.3 0.5 0.03 14.1 0 2.2 2 1 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:310153-311269 Augustus predicted protein sequence Tomato scaffold380_contigs=11~310153-311269 DUF2894 PF11445.3 g50528.t1 - 0.0094 16.2 0.4 0.017 15.3 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2894) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:112535-113590 Augustus predicted protein sequence Tomato scaffold1566_contigs=4~112535-113590 LAT PF15234.1 g18941.t1 - 0.018 14.4 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 Linker for activation of T-cells | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:119481-122191 Augustus predicted protein sequence Tomato scaffold738_contigs=9~119481-122191 UPF0004 PF00919.15 g2141.t1 - 0.097 12.5 0 0.32 10.8 0 1.8 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:198640-199245 Augustus predicted protein sequence Tomato scaffold227_contigs=2~198640-199245 DUF4164 PF13747.1 g17813.t1 - 0.0036 17.3 4.7 0.24 11.5 0.7 3.1 2 1 0 3 3 3 2 Domain of unknown function (DUF4164) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:36230-37882 Augustus predicted protein sequence Tomato scaffold715_contigs=2~36230-37882 DUF3285 PF11688.3 g32088.t1 - 0.23 11.1 1.2 0.45 10.1 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:315816-316616 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~315816-316616 Cellulose_synt PF03552.9 g25023.t1 - 0.45 8.7 5.4 0.67 8.1 3.8 1.2 1 0 0 1 1 1 0 Cellulose synthase | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:88440-89297 Augustus predicted protein sequence Tomato scaffold909_contigs=6~88440-89297 2Fe-2S_Ferredox PF11591.3 g54570.t1 - 0.091 12.4 0.4 0.23 11.1 0.3 1.6 1 0 0 1 1 1 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:66629-66991 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~66629-66991 DUF4296 PF14129.1 g26810.t1 - 0.043 13.9 0.3 0.053 13.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:86830-87102 Augustus predicted protein sequence Tomato scaffold961_contigs=8~86830-87102 ATHILA PF03078.10 g8416.t1 - 2.6E-011 42.7 0 2.9E-011 42.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:149506-151011 Augustus predicted protein sequence Tomato scaffold426_contigs=7~149506-151011 Dsh_C PF12316.3 g12671.t1 - 0.75 9.8 4.6 1 9.4 3.2 1.2 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:703141-707177 Augustus predicted protein sequence Tomato scaffold556_contigs=11~703141-707177 UBN2 PF14223.1 g35050.t1 - 0.0038 17 0 0.054 13.2 0 2 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:53587-54297 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~53587-54297 Phage_GPO PF05929.6 g68716.t1 - 0.12 11.5 0 0.12 11.5 0 1.1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:74635-76357 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~74635-76357 UBN2 PF14223.1 g28213.t1 - 0.12 12.1 0.1 0.12 12.1 0 2.7 3 0 0 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:155597-158220 Augustus predicted protein sequence Tomato scaffold993_contigs=5~155597-158220 DBD_Tnp_Mut PF03108.10 g12066.t1 - 1.5E-010 40.4 1.7 3.4E-010 39.3 1.1 1.5 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:322821-323081 Augustus predicted protein sequence Tomato scaffold535_contigs=8~322821-323081 RCSD PF05177.7 g45904.t1 - 7.8 7 14.3 3.9 8 5.7 2.3 1 1 1 2 2 2 0 RCSD region | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:142397-143200 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~142397-143200 DUF4201 PF13870.1 g6564.t1 - 0.089 12.2 4.7 0.13 11.7 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:188932-189351 Augustus predicted protein sequence Tomato scaffold378_contigs=5~188932-189351 BSP_II PF05432.6 g49776.t1 - 0.037 13.3 2.6 0.056 12.7 1.8 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:190680-195423 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~190680-195423 SMN PF06003.7 g8817.t1 - 9.3 5.2 8.6 6.7 5.7 4.8 1.4 1 1 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:77375-78354 Augustus predicted protein sequence Tomato scaffold441_contigs=5~77375-78354 DUF2214 PF09980.4 g47916.t1 - 0.035 13.8 0.2 1.7 8.3 0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2214) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:58600-59022 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~58600-59022 Cytochrome_CBB3 PF13442.1 g37437.t1 - 0.13 12.4 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:250358-250899 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~250358-250899 ATHILA PF03078.10 g42361.t1 - 0.055 12 0 0.074 11.6 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1355_contigs=6, transcript_loc=scaffold1355_contigs=6:33-785 Augustus predicted protein sequence Tomato scaffold1355_contigs=6~33-785 TLP-20 PF06088.6 g23701.t1 - 0.4 10.3 3.2 0.5 10 2.2 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:80103-80426 Augustus predicted protein sequence Tomato scaffold865_contigs=7~80103-80426 DMPK_coil PF08826.5 g62339.t1 - 2.4 8.1 7.2 1.2 9 1 3 4 0 0 4 4 4 0 DMPK coiled coil domain like | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:74566-75462 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~74566-75462 PBP_sp32 PF07222.7 g72837.t1 - 0.43 9.7 4.2 0.64 9.1 2.9 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:247961-248743 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~247961-248743 DUF2914 PF11141.3 g24680.t1 - 0.12 11.9 0.4 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2914) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:80929-81288 Augustus predicted protein sequence Tomato scaffold893_contigs=2~80929-81288 Vir_act_alpha_C PF10400.4 g72430.t1 - 0.11 12.9 0.2 0.11 12.9 0.1 2.5 1 1 1 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:3497-4117 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~3497-4117 NgoMIV_restric PF09015.5 g65206.t1 - 0.025 13.6 0 0.034 13.1 0 1.1 1 0 0 1 1 1 0 NgoMIV restriction enzyme | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:332568-332942 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~332568-332942 Dynactin_p22 PF07426.6 g49545.t1 - 0.1 11.9 0 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Dynactin subunit p22 | Ref_seq=scaffold1541_contigs=9, transcript_loc=scaffold1541_contigs=9:157325-163035 Augustus predicted protein sequence Tomato scaffold1541_contigs=9~157325-163035 DUF3772 PF12607.3 g25059.t1 - 0.035 13.7 0.1 0.088 12.4 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3772) | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:259087-266524 Augustus predicted protein sequence Tomato scaffold909_contigs=6~259087-266524 OAD_gamma PF04277.8 g81436.t1 - 0.037 14.4 3.1 0.22 11.9 0.7 2.4 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:142296-143534 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~142296-143534 DUF724 PF05266.9 g77783.t1 - 8.9 5.8 9.6 14 5.2 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:359208-360866 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~359208-360866 DUF3987 PF13148.1 g7016.t1 - 0.01 14.4 0.8 0.011 14.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:206543-206839 Augustus predicted protein sequence Tomato scaffold386_contigs=10~206543-206839 Ribosomal_L15e PF00827.12 g32848.t1 - 0.00077 19 1.6 0.00077 19 1.1 1.7 2 0 0 2 2 2 1 Ribosomal L15 | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:175197-176672 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~175197-176672 P2X_receptor PF00864.14 g48659.t1 - 0.034 12.8 0 0.045 12.4 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:638440-639099 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~638440-639099 BatA PF07584.6 g65451.t1 - 0.053 13.7 0 0.064 13.4 0 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:23470-24448 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~23470-24448 GRP PF07172.6 g18558.t1 - 1.6 9.2 16.7 1.8 9.1 11.6 1.1 1 0 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold727_contigs=8, transcript_loc=scaffold727_contigs=8:250134-250340 Augustus predicted protein sequence Tomato scaffold727_contigs=8~250134-250340 Herpes_UL7 PF01677.11 g38108.t1 - 0.061 12.6 0 0.079 12.2 0 1.1 1 0 0 1 1 1 0 Herpesvirus UL7 like | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:254651-256802 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~254651-256802 DUF1517 PF07466.6 g38781.t1 - 1.4 7.8 3.4 1.6 7.6 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) | Ref_seq=scaffold1251_contigs=2, transcript_loc=scaffold1251_contigs=2:14254-14541 Augustus predicted protein sequence Tomato scaffold1251_contigs=2~14254-14541 RCSD PF05177.7 g34898.t1 - 0.03 14.8 5.7 0.039 14.4 3.9 1.2 1 0 0 1 1 1 0 RCSD region | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:127039-127395 Augustus predicted protein sequence Tomato scaffold1165_contigs=35~127039-127395 BCAS2 PF05700.6 g50323.t1 - 0.0015 18 5.2 0.0021 17.5 3.6 1.2 1 0 0 1 1 1 1 Breast carcinoma amplified sequence 2 (BCAS2) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:59717-60163 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~59717-60163 zf-CCHC PF00098.18 g27315.t1 - 0.0011 18.8 0.6 0.0017 18.1 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:155866-156507 Augustus predicted protein sequence Tomato scaffold975_contigs=17~155866-156507 ZipA_C PF04354.8 g23411.t1 - 0.021 14.3 0.1 4.5 6.7 0 2.7 1 1 2 3 3 3 0 ZipA, C-terminal FtsZ-binding domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:122676-123079 Augustus predicted protein sequence Tomato scaffold859_contigs=6~122676-123079 ATHILA PF03078.10 g30089.t1 - 0.0000028 26.1 0 0.00097 17.8 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:477125-478312 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~477125-478312 Cast PF10174.4 g26876.t1 - 0.0097 14 0.7 0.012 13.6 0.5 1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:286025-286700 Augustus predicted protein sequence Tomato scaffold961_contigs=8~286025-286700 TGF_beta_GS PF08515.7 g544.t1 - 0.016 14.4 0.1 0.023 14 0.1 1.3 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:1-109 Augustus predicted protein sequence Tomato scaffold53_contigs=4~1-109 THOC7 PF05615.8 g19390.t1 - 0.015 15.6 2.2 0.053 13.7 1.5 1.9 1 1 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:336982-339415 Augustus predicted protein sequence Tomato scaffold751_contigs=13~336982-339415 UBN2 PF14223.1 g67987.t1 - 0.005 16.6 1.1 0.0064 16.2 0.2 1.5 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:22504-22956 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~22504-22956 INCA1 PF15142.1 g42954.t1 - 0.19 11.4 3 0.3 10.8 2 1.2 1 0 0 1 1 1 0 INCA1 | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:82376-84114 Augustus predicted protein sequence Tomato scaffold1377_contigs=3~82376-84114 Neural_ProG_Cyt PF06567.6 g49289.t1 - 0.1 12.7 0.4 0.15 12.2 0.3 1.3 1 1 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:25173-25436 Augustus predicted protein sequence Tomato scaffold1532_contigs=5~25173-25436 TFIIA PF03153.8 g34118.t1 - 0.85 9.4 8.9 0.71 9.7 6.2 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:80636-80998 Augustus predicted protein sequence Tomato scaffold1142_contigs=5~80636-80998 Trehalase PF01204.13 g56482.t1 - 0.0089 14.7 2.9 0.0096 14.5 2 1 1 0 0 1 1 1 1 Trehalase | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:83421-83822 Augustus predicted protein sequence Tomato scaffold1809_contigs=8~83421-83822 Mto2_bdg PF12808.2 g2031.t1 - 0.03 14.4 2.1 0.12 12.5 0.5 2.3 1 1 1 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:176449-176883 Augustus predicted protein sequence Tomato scaffold223_contigs=4~176449-176883 Trehalase PF01204.13 g24054.t1 - 0.094 11.3 6.2 0.12 10.9 4.3 1.1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:249040-249671 Augustus predicted protein sequence Tomato scaffold875_contigs=10~249040-249671 RVT_3 PF13456.1 g42232.t1 - 6E-011 41.9 0 1E-010 41.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:177768-178656 Augustus predicted protein sequence Tomato scaffold1349_contigs=8~177768-178656 DUF2543 PF10820.3 g13690.t1 - 0.073 13 0.1 0.37 10.8 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2543) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:387166-387782 Augustus predicted protein sequence Tomato scaffold578_contigs=5~387166-387782 UBN2_2 PF14227.1 g77842.t1 - 0.02 14.4 1 0.046 13.2 0.1 1.9 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:577624-578146 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~577624-578146 XhlA PF10779.4 g77008.t1 - 0.026 14.4 0.1 0.037 13.9 0 1.2 1 0 0 1 1 1 0 Haemolysin XhlA | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:1144-1470 Augustus predicted protein sequence Tomato scaffold2644_contigs=21~1144-1470 DUF2793 PF10983.3 g40553.t1 - 0.078 12.7 0.2 0.078 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2793) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:60553-60838 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~60553-60838 UBN2 PF14223.1 g40929.t1 - 0.023 14.5 0 0.028 14.1 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:236763-237041 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~236763-237041 Cut12 PF11500.3 g54686.t1 - 0.03 13.9 0.2 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Spindle pole body formation-associated protein | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:147065-147421 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~147065-147421 zf-RVT PF13966.1 g13081.t1 - 0.000033 24 3.3 0.0001 22.5 2.2 2 1 1 1 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:193175-194809 Augustus predicted protein sequence Tomato scaffold568_contigs=22~193175-194809 FAR1 PF03101.10 g34457.t1 - 0.0053 17.2 0.1 0.0073 16.8 0 1.2 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:2029-2916 Augustus predicted protein sequence Tomato scaffold1151_contigs=2~2029-2916 DUF1071 PF06378.6 g74163.t1 - 0.017 14.3 0.5 0.021 13.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1071) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:139627-140465 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~139627-140465 DNA_Packaging_2 PF11123.3 g27364.t1 - 0.0013 18.5 0 0.0022 17.8 0 1.4 1 1 0 1 1 1 1 DNA packaging protein | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:12488-13655 Augustus predicted protein sequence Tomato scaffold976_contigs=1~12488-13655 ATHILA PF03078.10 g25716.t1 - 0.00019 20.1 0 0.00019 20.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:304430-304750 Augustus predicted protein sequence Tomato scaffold930_contigs=4~304430-304750 zf-CCHC PF00098.18 g84696.t1 - 0.000021 24.2 0.7 0.000031 23.6 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:92135-92413 Augustus predicted protein sequence Tomato scaffold2777_contigs=1~92135-92413 zf-Sec23_Sec24 PF04810.10 g12058.t1 - 0.083 12.4 0.5 0.16 11.5 0.3 1.4 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:291196-292411 Augustus predicted protein sequence Tomato scaffold535_contigs=8~291196-292411 Pox_Ag35 PF03286.9 g71017.t1 - 0.44 10 8.7 0.46 9.9 6 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:461632-461874 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~461632-461874 NARP1 PF12569.3 g10352.t1 - 0.48 9.1 5.4 0.65 8.6 3.7 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:25812-28643 Augustus predicted protein sequence Tomato scaffold495_contigs=2~25812-28643 Gal_Lectin PF02140.13 g32142.t1 - 0.25 11.7 1.7 0.38 11 0.6 1.8 2 1 0 2 2 2 0 Galactose binding lectin domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:548492-548863 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~548492-548863 DUF2315 PF10231.4 g82635.t1 - 0.078 12.8 0.1 0.18 11.7 0.1 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2315) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:313982-314825 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~313982-314825 YdjO PF14169.1 g3294.t1 - 0.053 12.9 0 0.11 12 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:85950-87746 Augustus predicted protein sequence Tomato scaffold266_contigs=2~85950-87746 Endonuc_Holl PF10107.4 g77158.t1 - 0.0024 17.5 0.2 0.0025 17.4 0.1 1.1 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:214577-215034 Augustus predicted protein sequence Tomato scaffold2650_contigs=9~214577-215034 VGCC_beta4Aa_N PF12052.3 g11407.t1 - 0.12 12.3 0.6 1 9.2 0.1 2.5 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:585112-585471 Augustus predicted protein sequence Tomato scaffold523_contigs=15~585112-585471 DUF4404 PF14357.1 g50220.t1 - 0.81 10.1 4.3 8.2 6.9 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:4838-5619 Augustus predicted protein sequence Tomato scaffold1561_contigs=2~4838-5619 DUF3018 PF11455.3 g52136.t1 - 0.000076 22.5 0.1 9.7 6.2 0 3.4 3 0 0 3 3 3 3 Protein of unknown function (DUF3018) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:143039-148977 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~143039-148977 DUF553 PF04473.7 g38146.t1 - 0.021 14.1 0 0.024 13.9 0 1.1 1 0 0 1 1 1 0 Transglutaminase-like domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:379111-379443 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~379111-379443 p25-alpha PF05517.7 g52532.t1 - 0.004 17.4 0 0.0054 17 0 1.1 1 0 0 1 1 1 1 p25-alpha | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:330738-332786 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~330738-332786 APG6 PF04111.7 g47721.t1 - 0.05 12.6 1.3 0.061 12.3 0.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:267738-268373 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~267738-268373 DUF2852 PF11014.3 g62162.t1 - 0.063 13.2 0.1 0.39 10.6 0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2852) | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:175756-179520 Augustus predicted protein sequence Tomato scaffold1984_contigs=7~175756-179520 DUF2627 PF11118.3 g23146.t1 - 0.026 14.5 0 14 5.9 0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:11231-13494 Augustus predicted protein sequence Tomato scaffold850_contigs=10~11231-13494 Nodulin_late PF07127.6 g58668.t1 - 0.0061 16.6 3.9 0.0083 16.2 2.7 1.3 1 1 0 1 1 1 1 Late nodulin protein | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:81779-82160 Augustus predicted protein sequence Tomato scaffold1870_contigs=16~81779-82160 SRI PF08236.6 g9506.t1 - 0.035 14 1.7 9.2 6.2 0.1 2.6 2 0 0 2 2 2 0 SRI (Set2 Rpb1 interacting) domain | Ref_seq=scaffold457_contigs=12, transcript_loc=scaffold457_contigs=12:33752-36293 Augustus predicted protein sequence Tomato scaffold457_contigs=12~33752-36293 RNase_H2-Ydr279 PF09468.5 g27322.t1 - 0.044 12.9 2.1 0.044 12.9 1.5 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:191727-192268 Augustus predicted protein sequence Tomato scaffold975_contigs=17~191727-192268 HrpJ PF07201.6 g69873.t1 - 0.027 14.4 1.2 0.033 14.1 0.8 1.1 1 0 0 1 1 1 0 HrpJ-like domain | Ref_seq=scaffold2311_contigs=3, transcript_loc=scaffold2311_contigs=3:31364-32742 Augustus predicted protein sequence Tomato scaffold2311_contigs=3~31364-32742 Telomere_Sde2 PF13019.1 g37924.t1 - 0.021 14.5 0 0.025 14.2 0 1.1 1 0 0 1 1 1 0 Telomere stability and silencing | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:240828-241094 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~240828-241094 Apq12 PF12716.2 g746.t1 - 0.08 12.6 0.2 0.55 9.9 0 2.2 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:399855-402225 Augustus predicted protein sequence Tomato scaffold95_contigs=9~399855-402225 SLT_L PF14718.1 g69389.t1 - 0.12 12.1 1.4 0.3 10.8 1 1.7 1 1 0 1 1 1 0 Soluble lytic murein transglycosylase L domain | Ref_seq=scaffold2275_contigs=2, transcript_loc=scaffold2275_contigs=2:4366-4698 Augustus predicted protein sequence Tomato scaffold2275_contigs=2~4366-4698 Tmemb_cc2 PF10267.4 g27611.t1 - 0.11 11.1 0 0.11 11 0 1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:73461-73787 Augustus predicted protein sequence Tomato scaffold982_contigs=2~73461-73787 APG6 PF04111.7 g27617.t1 - 0.05 12.6 1.1 0.06 12.3 0.8 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:22982-24258 Augustus predicted protein sequence Tomato scaffold983_contigs=13~22982-24258 S_locus_glycop PF00954.15 g77785.t1 - 0.089 13 0 0.18 12.1 0 1.5 1 0 0 1 1 1 0 S-locus glycoprotein family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:369287-372661 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~369287-372661 DUF2795 PF11387.3 g53837.t1 - 0.0044 16.8 1.3 8.4 6.3 0 3.9 1 1 3 4 4 4 4 Protein of unknown function (DUF2795) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:226336-226821 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~226336-226821 Chromo PF00385.19 g2379.t1 - 0.042 13.5 0 0.085 12.5 0 1.6 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:130822-132436 Augustus predicted protein sequence Tomato scaffold235_contigs=2~130822-132436 DUF2215 PF10225.4 g72460.t1 - 0.035 13.5 2.6 0.055 12.9 1.8 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:166048-167455 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~166048-167455 Cnl2_NKP2 PF09447.5 g59352.t1 - 0.072 12.7 3.5 0.13 11.9 2.5 1.4 1 0 0 1 1 1 0 Cnl2/NKP2 family protein | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:154577-157121 Augustus predicted protein sequence Tomato scaffold1915_contigs=10~154577-157121 AvrPphF-ORF-2 PF09143.5 g4582.t1 - 0.067 12.9 0 0.081 12.6 0 1.1 1 0 0 1 1 1 0 AvrPphF-ORF-2 | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:9639-10121 Augustus predicted protein sequence Tomato scaffold304_contigs=1~9639-10121 MIP-T3 PF10243.4 g46680.t1 - 0.00043 18.9 7.2 0.00046 18.7 5 1 1 0 0 1 1 1 1 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:16184-17432 Augustus predicted protein sequence Tomato scaffold1485_contigs=2~16184-17432 CAF-1_p150 PF11600.3 g70815.t1 - 0.29 10.4 32.8 0.54 9.5 22.7 1.4 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:181867-182629 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~181867-182629 ATHILA PF03078.10 g76219.t1 - 0.00000012 30.6 0.2 0.00016 20.3 0 3 1 1 2 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:228752-230820 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~228752-230820 Sin3_corepress PF08295.7 g78519.t1 - 0.22 11.2 3.2 29 4.5 0.1 3.3 1 1 2 3 3 3 0 Sin3 family co-repressor | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:223000-224161 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~223000-224161 Lzipper-MIP1 PF14389.1 g18975.t1 - 0.0031 17.5 0.8 0.51 10.4 0 2.2 1 1 1 2 2 2 2 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold741_contigs=2, transcript_loc=scaffold741_contigs=2:10354-11173 Augustus predicted protein sequence Tomato scaffold741_contigs=2~10354-11173 RhoGEF PF00621.15 g50395.t1 - 0.013 15.3 0.6 0.023 14.5 0.4 1.5 1 1 0 1 1 1 0 RhoGEF domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:297602-297886 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~297602-297886 PH_3 PF14593.1 g47329.t1 - 0.043 13.6 0 0.062 13.1 0 1.3 1 0 0 1 1 1 0 PH domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:184223-184519 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~184223-184519 DUF1347 PF07079.6 g37342.t1 - 0.0031 15.7 0.1 0.0036 15.5 0.1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:139308-139694 Augustus predicted protein sequence Tomato scaffold1217_contigs=8~139308-139694 DUF641 PF04859.7 g19707.t1 - 0.0097 15.6 1.3 0.0097 15.6 0.9 1.6 2 0 0 2 2 2 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:169481-175102 Augustus predicted protein sequence Tomato scaffold757_contigs=4~169481-175102 UPF0561 PF10573.4 g22581.t1 - 2 8.2 4.7 0.71 9.7 1.3 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:14318-15465 Augustus predicted protein sequence Tomato scaffold832_contigs=9~14318-15465 Herpes_UL33 PF03581.8 g62156.t1 - 0.11 12.3 0 0.18 11.6 0 1.3 1 0 0 1 1 1 0 Herpesvirus UL33-like protein | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:153011-153580 Augustus predicted protein sequence Tomato scaffold1984_contigs=7~153011-153580 ThylakoidFormat PF11264.3 g81608.t1 - 0.061 12.9 0 0.063 12.8 0 1.2 1 0 0 1 1 1 0 Thylakoid formation protein | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:266712-267062 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~266712-267062 TAF1D PF15333.1 g36456.t1 - 0.19 11.5 14 0.21 11.3 9.7 1 1 0 0 1 1 1 0 TATA box-binding protein-associated factor 1D | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:8407-9272 Augustus predicted protein sequence Tomato scaffold1196_contigs=5~8407-9272 NAF PF03822.9 g64665.t1 - 0.029 14 0.6 0.3 10.8 0.2 2 1 1 1 2 2 2 0 NAF domain | Ref_seq=scaffold2080_contigs=18, transcript_loc=scaffold2080_contigs=18:73501-74264 Augustus predicted protein sequence Tomato scaffold2080_contigs=18~73501-74264 Casc1 PF12366.3 g19863.t1 - 0.0044 16.5 2.4 0.0056 16.2 1.7 1.1 1 0 0 1 1 1 1 Cancer susceptibility candidate 1 | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:121929-122548 Augustus predicted protein sequence Tomato scaffold760_contigs=13~121929-122548 SPATA19 PF15212.1 g77634.t1 - 0.077 13 0.1 0.096 12.7 0.1 1.2 1 0 0 1 1 1 0 Spermatogenesis-associated protein 19, mitochondrial | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:279703-280297 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~279703-280297 Dimer_Tnp_hAT PF05699.9 g54738.t1 - 0.083 12.5 0 0.12 12 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:30731-34354 Augustus predicted protein sequence Tomato scaffold1728_contigs=6~30731-34354 IFP_35_N PF07334.8 g6637.t1 - 0.034 14 0.9 0.089 12.7 0.6 1.8 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:97278-98231 Augustus predicted protein sequence Tomato scaffold380_contigs=11~97278-98231 DUF1985 PF09331.6 g18959.t1 - 0.0000016 27.9 0 0.0000028 27.1 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:207175-209450 Augustus predicted protein sequence Tomato scaffold738_contigs=9~207175-209450 SicP-binding PF09119.5 g36035.t1 - 0.087 12.5 0 0.13 11.9 0 1.3 1 0 0 1 1 1 0 SicP binding | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:154849-155184 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~154849-155184 zf-CCHC PF00098.18 g77888.t1 - 0.00017 21.3 0.6 0.00033 20.4 0.4 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:708996-710839 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~708996-710839 RVT_3 PF13456.1 g86256.t1 - 0.0056 16.4 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:55195-55763 Augustus predicted protein sequence Tomato scaffold2846_contigs=1~55195-55763 DUF4201 PF13870.1 g40892.t1 - 0.075 12.4 5.7 0.12 11.7 4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:53104-54435 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~53104-54435 DUF3079 PF11278.3 g13405.t1 - 0.048 13.2 1.1 0.1 12.1 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3079) | Ref_seq=scaffold574_contigs=11, transcript_loc=scaffold574_contigs=11:81225-81710 Augustus predicted protein sequence Tomato scaffold574_contigs=11~81225-81710 GRP PF07172.6 g65087.t1 - 0.00008 23 7.5 0.0001 22.6 5.2 1.2 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold2113_contigs=6, transcript_loc=scaffold2113_contigs=6:124741-125021 Augustus predicted protein sequence Tomato scaffold2113_contigs=6~124741-125021 Aa_trans PF01490.13 g16882.t1 - 0.18 10.2 0.6 0.23 9.9 0.4 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:48199-53793 Augustus predicted protein sequence Tomato scaffold686_contigs=3~48199-53793 YdjO PF14169.1 g43004.t1 - 0.055 12.9 0.1 0.092 12.2 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:61409-61936 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~61409-61936 FH2 PF02181.18 g56898.t1 - 0.024 13.5 0.1 0.033 13 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:14192-14884 Augustus predicted protein sequence Tomato scaffold1822_contigs=5~14192-14884 zf-CCHC PF00098.18 g69523.t1 - 0.031 14.1 0.1 0.049 13.5 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2302_contigs=9, transcript_loc=scaffold2302_contigs=9:3544-4077 Augustus predicted protein sequence Tomato scaffold2302_contigs=9~3544-4077 DUF2681 PF10883.3 g16049.t1 - 0.12 12.5 2.4 0.16 12.2 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:106500-106802 Augustus predicted protein sequence Tomato scaffold654_contigs=10~106500-106802 IDO PF01231.13 g56359.t1 - 0.008 14.6 0.3 0.0093 14.4 0.2 1 1 0 0 1 1 1 1 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:65144-65599 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~65144-65599 DUF1830 PF08865.6 g87570.t1 - 0.00027 20.4 0.2 24 4.6 0 4.2 4 0 0 4 4 4 3 Domain of unknown function (DUF1830) | Ref_seq=scaffold3328_contigs=1, transcript_loc=scaffold3328_contigs=1:1-1976 Augustus predicted protein sequence Tomato scaffold3328_contigs=1~1-1976 INCA1 PF15142.1 g53690.t1 - 0.00096 18.9 0 0.41 10.4 0 2.1 2 0 0 2 2 2 2 INCA1 | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:45738-46627 Augustus predicted protein sequence Tomato scaffold1701_contigs=25~45738-46627 Med19 PF10278.4 g82653.t1 - 0.031 13.9 4.8 0.03 13.9 3.3 1.1 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:384758-385102 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~384758-385102 Baculo_8kDa PF06096.6 g52528.t1 - 0.14 12 0 0.25 11.2 0 1.5 1 0 0 1 1 1 0 Baculoviridae 8.2 KDa protein | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:320679-322039 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~320679-322039 Effector_1 PF04518.7 g40713.t1 - 0.15 10.9 0 0.21 10.5 0 1.1 1 0 0 1 1 1 0 Effector from type III secretion system | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:172282-174405 Augustus predicted protein sequence Tomato scaffold1308_contigs=16~172282-174405 RBP_receptor PF14752.1 g59628.t1 - 0.1 10.9 0 0.1 10.9 0 1 1 0 0 1 1 1 0 Retinol binding protein receptor | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:15992-16333 Augustus predicted protein sequence Tomato scaffold1928_contigs=20~15992-16333 ATHILA PF03078.10 g35956.t1 - 0.00031 19.4 0 0.0037 15.9 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:41278-41655 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~41278-41655 zf-RVT PF13966.1 g40231.t1 - 0.0047 17.2 11.8 0.022 15 1.6 2.3 1 1 1 2 2 2 2 zinc-binding in reverse transcriptase | Ref_seq=scaffold1296_contigs=2, transcript_loc=scaffold1296_contigs=2:6148-7252 Augustus predicted protein sequence Tomato scaffold1296_contigs=2~6148-7252 Phage_G PF02306.10 g26482.t1 - 0.082 12.5 0 0.13 11.8 0 1.3 1 0 0 1 1 1 0 Major spike protein (G protein) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:180852-181583 Augustus predicted protein sequence Tomato scaffold949_contigs=2~180852-181583 Lipase_bact_N PF12262.3 g40015.t1 - 0.0074 15.5 0.1 0.18 10.9 0 2.1 1 1 1 2 2 2 2 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:141294-142178 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~141294-142178 Statherin PF03875.8 g13806.t1 - 3.4 7.6 5.9 8.8 6.2 4.1 1.7 1 0 0 1 1 1 0 Statherin | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:247198-248142 Augustus predicted protein sequence Tomato scaffold582_contigs=8~247198-248142 DUF4219 PF13961.1 g78328.t1 - 0.000086 21.8 0.9 0.00035 19.9 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:187052-188485 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~187052-188485 CENP-B_dimeris PF09026.5 g45551.t1 - 0.013 15.7 7.3 0.035 14.3 5.1 1.8 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1451_contigs=1, transcript_loc=scaffold1451_contigs=1:20304-21170 Augustus predicted protein sequence Tomato scaffold1451_contigs=1~20304-21170 CENP-Q PF13094.1 g47327.t1 - 0.014 15.4 1.3 0.019 15 0.9 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:181781-182224 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~181781-182224 Peptidase_M75 PF09375.5 g49807.t1 - 0.19 10.9 2.9 0.19 10.9 2 1.2 1 0 0 1 1 1 0 Imelysin | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:287440-287664 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~287440-287664 Vac14_Fig4_bd PF11916.3 g49095.t1 - 0.13 11.3 0.1 0.15 11.1 0 1.1 1 0 0 1 1 1 0 Vacuolar protein 14 C-terminal Fig4p binding | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:113380-113761 Augustus predicted protein sequence Tomato scaffold1525_contigs=4~113380-113761 Adaptin_binding PF10199.4 g77507.t1 - 0.14 12.4 2.1 0.16 12.2 1.5 1.1 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:230151-230779 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~230151-230779 DUF1682 PF07946.9 g5557.t1 - 0.039 12.8 7.8 0.053 12.3 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:5707-11645 Augustus predicted protein sequence Tomato scaffold332_contigs=3~5707-11645 RNA_pol_Rpb2_1 PF04563.10 g24194.t1 - 0.055 12.3 0 0.064 12.1 0 1.1 1 0 0 1 1 1 0 RNA polymerase beta subunit | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:577117-577470 Augustus predicted protein sequence Tomato scaffold876_contigs=13~577117-577470 Phostensin_N PF13916.1 g16795.t1 - 0.92 9.5 4.7 17 5.5 1.1 2.5 1 1 1 2 2 2 0 PP1-regulatory protein, Phostensin N-terminal | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:50479-50757 Augustus predicted protein sequence Tomato scaffold682_contigs=5~50479-50757 RVT_3 PF13456.1 g70428.t1 - 0.00023 20.8 0.5 0.00055 19.6 0.1 1.8 2 1 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:249123-249500 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~249123-249500 ATHILA PF03078.10 g11637.t1 - 0.0000081 24.6 0 0.000017 23.6 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:165276-166335 Augustus predicted protein sequence Tomato scaffold528_contigs=4~165276-166335 zf-ribbon_3 PF13248.1 g60413.t1 - 0.063 12.5 0.1 12 5.3 0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:18933-19621 Augustus predicted protein sequence Tomato scaffold1951_contigs=6~18933-19621 Uds1 PF15456.1 g55372.t1 - 0.0025 17.7 0.4 0.0025 17.7 0.3 1.5 2 0 0 2 2 2 1 Up-regulated During Septation | Ref_seq=scaffold1742_contigs=1, transcript_loc=scaffold1742_contigs=1:8487-8777 Augustus predicted protein sequence Tomato scaffold1742_contigs=1~8487-8777 Citrate_ly_lig PF08218.6 g58368.t1 - 0.018 14.5 0 0.024 14.1 0 1.1 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:218081-218948 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~218081-218948 DUF1863 PF08937.6 g28751.t1 - 0.12 12.4 0.2 0.3 11.1 0 1.7 2 0 0 2 2 2 0 MTH538 TIR-like domain (DUF1863) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:171249-171629 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~171249-171629 IL6Ra-bind PF09240.5 g84553.t1 - 0.27 11.4 2 0.32 11.1 0.2 1.9 2 0 0 2 2 2 0 Interleukin-6 receptor alpha chain, binding | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:42265-42627 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~42265-42627 VID27 PF08553.5 g17991.t1 - 5.7 5 13.9 7.9 4.5 9.7 1.2 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:131094-134417 Augustus predicted protein sequence Tomato scaffold720_contigs=9~131094-134417 Spb1_C PF07780.7 g37968.t1 - 0.0078 15.7 0.8 0.011 15.2 0.6 1.1 1 0 0 1 1 1 1 Spb1 C-terminal domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:377269-379765 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~377269-379765 DUF3814 PF12769.2 g13226.t1 - 0.1 12.7 0.4 0.13 12.3 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3814) | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:50747-52738 Augustus predicted protein sequence Tomato scaffold570_contigs=9~50747-52738 DUF3347 PF11827.3 g55784.t1 - 0.32 10.9 4.3 0.43 10.5 3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:73269-73830 Augustus predicted protein sequence Tomato scaffold1773_contigs=11~73269-73830 Mito_fiss_reg PF05308.6 g62584.t1 - 1 8.6 7.9 1.1 8.6 5.5 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:302284-302610 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~302284-302610 DUF556 PF04476.8 g56023.t1 - 0.69 9 3.2 6.6 5.8 0.1 2 1 1 1 2 2 2 0 Protein of unknown function (DUF556) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:357672-358108 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~357672-358108 Nup160 PF11715.3 g20202.t1 - 0.023 12.8 0 0.023 12.8 0 1 1 0 0 1 1 1 0 Nucleoporin Nup120/160 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:269426-269659 Augustus predicted protein sequence Tomato scaffold768_contigs=4~269426-269659 Nucleoplasmin PF03066.10 g47639.t1 - 0.065 12.7 5 0.068 12.6 3.4 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:6336-6791 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~6336-6791 Pox_RNA_Pol_19 PF05320.7 g4142.t1 - 0.29 10.8 1.7 0.34 10.6 1.2 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:115402-115727 Augustus predicted protein sequence Tomato scaffold293_contigs=5~115402-115727 DUF4283 PF14111.1 g3112.t1 - 0.00013 21 0.4 0.0002 20.4 0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:144274-144717 Augustus predicted protein sequence Tomato scaffold259_contigs=7~144274-144717 zf-BED PF02892.10 g35976.t1 - 0.093 12.5 1.5 0.21 11.3 1 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:130379-131014 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~130379-131014 Rtf2 PF04641.7 g53796.t1 - 0.4 9.8 16.3 0.67 9.1 11.3 1.3 1 0 0 1 1 1 0 Rtf2 RING-finger | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:58171-59001 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~58171-59001 AflR PF08493.5 g9694.t1 - 2.9 6.8 4.9 3.6 6.5 3.4 1.2 1 0 0 1 1 1 0 Aflatoxin regulatory protein | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:106142-106507 Augustus predicted protein sequence Tomato scaffold469_contigs=1~106142-106507 DUF2706 PF10913.3 g44236.t1 - 0.11 12.1 0.1 0.22 11.1 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2706) | Ref_seq=scaffold1419_contigs=9, transcript_loc=scaffold1419_contigs=9:150136-150591 Augustus predicted protein sequence Tomato scaffold1419_contigs=9~150136-150591 Med27 PF11571.3 g76692.t1 - 0.14 12.2 1.1 0.19 11.8 0.8 1.1 1 0 0 1 1 1 0 Mediator complex subunit 27 | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:359991-360251 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~359991-360251 Fer4_17 PF13534.1 g5709.t1 - 0.034 14.4 0.2 0.058 13.7 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:95095-96693 Augustus predicted protein sequence Tomato scaffold337_contigs=4~95095-96693 Exo_endo_phos PF03372.18 g70854.t1 - 0.0021 18 0 1.9 8.3 0 2.3 1 1 1 2 2 2 2 Endonuclease/Exonuclease/phosphatase family | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:339550-340648 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~339550-340648 G6B PF15096.1 g29961.t1 - 0.0029 17.1 0.4 0.0035 16.8 0.3 1.1 1 0 0 1 1 1 1 G6B family | Ref_seq=scaffold1036_contigs=2, transcript_loc=scaffold1036_contigs=2:1-2498 Augustus predicted protein sequence Tomato scaffold1036_contigs=2~1-2498 TerD PF02342.13 g18250.t1 - 0.052 12.8 0.3 0.061 12.6 0.2 1.1 1 0 0 1 1 1 0 TerD domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:879495-880156 Augustus predicted protein sequence Tomato scaffold720_contigs=9~879495-880156 Phage_lambd_GpG PF06894.6 g71848.t1 - 0.11 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda minor tail protein (GpG) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:54910-55423 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~54910-55423 Tim54 PF11711.3 g59958.t1 - 1.3 7.5 4.2 1.1 7.7 2.1 1.3 1 1 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:424067-424561 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~424067-424561 Syntaxin_2 PF14523.1 g7397.t1 - 0.12 12.4 1.1 0.13 12.3 0.1 1.5 2 0 0 2 2 2 0 Syntaxin-like protein | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:183963-184367 Augustus predicted protein sequence Tomato scaffold395_contigs=7~183963-184367 DUF2580 PF10824.3 g80292.t1 - 0.14 12.5 0 6.6 7.1 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2580) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:1003491-1005371 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~1003491-1005371 DUF977 PF06163.6 g74823.t1 - 0.06 13.1 0 0.1 12.3 0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold2570_contigs=11, transcript_loc=scaffold2570_contigs=11:7783-8106 Augustus predicted protein sequence Tomato scaffold2570_contigs=11~7783-8106 JmjN PF02375.12 g2554.t1 - 0.027 13.9 0 0.047 13.2 0 1.4 1 0 0 1 1 1 0 jmjN domain | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:95876-96283 Augustus predicted protein sequence Tomato scaffold243_contigs=2~95876-96283 Bd3614_N PF14442.1 g7066.t1 - 0.042 13.8 2.3 0.044 13.7 1.6 1.1 1 0 0 1 1 1 0 Bd3614-like deaminase N-terminal | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:1431-1716 Augustus predicted protein sequence Tomato scaffold387_contigs=7~1431-1716 RIO1 PF01163.17 g74641.t1 - 0.14 11.5 0 0.18 11.1 0 1.1 1 0 0 1 1 1 0 RIO1 family | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:251412-253308 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~251412-253308 DUF2694 PF10904.3 g13915.t1 - 0.0081 16.1 0 0.012 15.5 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2694) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:548533-549006 Augustus predicted protein sequence Tomato scaffold582_contigs=8~548533-549006 Enkurin PF13864.1 g65448.t1 - 0.012 15.8 1.2 0.018 15.2 0.8 1.3 1 0 0 1 1 1 0 Calmodulin-binding | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:17364-17744 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~17364-17744 Nnf1 PF03980.9 g3591.t1 - 0.0012 18.8 6.2 0.083 12.8 0.1 3.3 2 1 1 3 3 3 1 Nnf1 | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:137894-138385 Augustus predicted protein sequence Tomato scaffold278_contigs=5~137894-138385 NOA36 PF06524.7 g57287.t1 - 1.3 8.2 5.2 2.9 7 3.6 1.6 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:54633-64534 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~54633-64534 Dmrt1 PF12374.3 g61655.t1 - 0.53 10.6 10.7 2.6 8.4 1.3 2.2 1 1 1 2 2 2 0 Double-sex mab3 related transcription factor 1 | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:160853-161357 Augustus predicted protein sequence Tomato scaffold1972_contigs=6~160853-161357 RICTOR_phospho PF14665.1 g83143.t1 - 0.02 14.9 2.6 0.062 13.3 0.3 2 1 1 1 2 2 2 0 Rapamycin-insensitive companion of mTOR, phosphorylation-site | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:136650-137653 Augustus predicted protein sequence Tomato scaffold2756_contigs=5~136650-137653 YlbE PF14003.1 g51485.t1 - 0.044 13.8 0.3 0.069 13.2 0.2 1.4 1 1 0 1 1 1 0 YlbE-like protein | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:9149-9624 Augustus predicted protein sequence Tomato scaffold1615_contigs=2~9149-9624 ATHILA PF03078.10 g75592.t1 - 0.000000025 32.9 0 0.0000003 29.3 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2603_contigs=7, transcript_loc=scaffold2603_contigs=7:11964-12617 Augustus predicted protein sequence Tomato scaffold2603_contigs=7~11964-12617 Tropomyosin PF00261.15 g36629.t1 - 0.0011 18.1 7.1 0.0011 18.1 4.9 1.6 2 0 0 2 2 2 1 Tropomyosin | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:149548-156333 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~149548-156333 Rrf2 PF02082.15 g84365.t1 - 0.13 12.4 0 0.28 11.3 0 1.6 1 0 0 1 1 1 0 Transcriptional regulator | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:177432-178651 Augustus predicted protein sequence Tomato scaffold2767_contigs=1~177432-178651 Malectin_like PF12819.2 g63580.t1 - 0.082 11.9 0 0.088 11.8 0 1 1 0 0 1 1 1 0 Carbohydrate-binding protein of the ER | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:571897-572228 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~571897-572228 UBN2 PF14223.1 g47116.t1 - 0.022 14.5 1 0.35 10.6 0 2.5 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:584632-588225 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~584632-588225 Retrotrans_gag PF03732.12 g81285.t1 - 0.0022 18 0.1 0.0033 17.4 0.1 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:221910-224012 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~221910-224012 IP_trans PF02121.13 g43736.t1 - 0.003 16.7 0.4 0.0046 16.1 0.3 1.3 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:189266-190112 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~189266-190112 UBN2_2 PF14227.1 g51079.t1 - 0.1 12.1 0 0.15 11.6 0 1.5 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:24885-27024 Augustus predicted protein sequence Tomato scaffold1606_contigs=13~24885-27024 YdjO PF14169.1 g70121.t1 - 0.0048 16.3 0.1 0.011 15.1 0 1.7 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:112114-114384 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~112114-114384 Inhibitor_I29 PF08246.7 g87291.t1 - 0.14 12.4 0 30 4.9 0 3 3 0 0 3 3 3 0 Cathepsin propeptide inhibitor domain (I29) | Ref_seq=scaffold2988_contigs=1, transcript_loc=scaffold2988_contigs=1:3440-3937 Augustus predicted protein sequence Tomato scaffold2988_contigs=1~3440-3937 VGCC_beta4Aa_N PF12052.3 g55676.t1 - 0.45 10.4 3.8 0.94 9.3 2.6 1.6 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1761_contigs=4, transcript_loc=scaffold1761_contigs=4:1057-5588 Augustus predicted protein sequence Tomato scaffold1761_contigs=4~1057-5588 B3 PF02362.16 g73220.t1 - 0.049 13.2 0 0.061 12.9 0 1.2 1 0 0 1 1 1 0 B3 DNA binding domain | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:1105600-1105857 Augustus predicted protein sequence Tomato scaffold2444_contigs=49~1105600-1105857 V_ATPase_I PF01496.14 g34313.t1 - 0.22 9.3 4 0.23 9.2 2.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:52827-53234 Augustus predicted protein sequence Tomato scaffold1147_contigs=3~52827-53234 UBN2 PF14223.1 g40008.t1 - 0.0052 16.5 1.1 2.8 7.7 0.1 2.9 3 0 0 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:107599-108244 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~107599-108244 RALF PF05498.6 g77913.t1 - 0.00028 21.6 0 0.00039 21.1 0 1.3 1 0 0 1 1 1 1 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:834352-834573 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~834352-834573 Cortex-I_coil PF09304.5 g26490.t1 - 0.025 14.6 0.6 0.044 13.8 0.4 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:198145-199081 Augustus predicted protein sequence Tomato scaffold949_contigs=2~198145-199081 Metal_resist PF13801.1 g48724.t1 - 0.083 12.8 1.5 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 Heavy-metal resistance | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:879991-880305 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~879991-880305 DUF982 PF06169.7 g51058.t1 - 0.11 12.2 0 0.16 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF982) | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:149702-150193 Augustus predicted protein sequence Tomato scaffold1605_contigs=5~149702-150193 MscS_porin PF12795.2 g1417.t1 - 0.1 11.9 2.8 0.081 12.2 0.6 1.7 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:15049-17796 Augustus predicted protein sequence Tomato scaffold202_contigs=3~15049-17796 Mpp10 PF04006.7 g54400.t1 - 3.8 5.7 18.8 4.7 5.4 13 1.1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:232546-232938 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~232546-232938 FlxA PF14282.1 g40550.t1 - 0.028 14.3 0.1 0.034 14 0 1.1 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:57422-57652 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~57422-57652 HOOK PF05622.7 g10817.t1 - 0.11 10.2 7.2 0.13 10 5 1.1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:211802-212098 Augustus predicted protein sequence Tomato scaffold507_contigs=4~211802-212098 P4Ha_N PF08336.6 g75998.t1 - 0.05 13.4 0.3 0.18 11.6 0.2 1.7 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:14612-14857 Augustus predicted protein sequence Tomato scaffold2618_contigs=26~14612-14857 Erythro-docking PF09277.6 g65629.t1 - 0.14 11.9 0.5 12 5.6 0 2.3 2 0 0 2 2 2 0 Erythronolide synthase, docking | Ref_seq=scaffold2135_contigs=3, transcript_loc=scaffold2135_contigs=3:22743-23972 Augustus predicted protein sequence Tomato scaffold2135_contigs=3~22743-23972 NeA_P2 PF12312.3 g48951.t1 - 0.0021 17.3 0.1 0.0023 17.2 0.1 1.1 1 0 0 1 1 1 1 Nepovirus subgroup A polyprotein | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:396441-396731 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~396441-396731 DUF2219 PF09982.4 g87559.t1 - 0.0035 16.2 4.7 24 3.6 0.1 4.7 4 1 1 5 5 5 4 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold3310_contigs=1, transcript_loc=scaffold3310_contigs=1:1-3370 Augustus predicted protein sequence Tomato scaffold3310_contigs=1~1-3370 DUF904 PF06005.7 g19391.t1 - 0.031 14.5 4.6 0.059 13.6 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:340442-342445 Augustus predicted protein sequence Tomato scaffold751_contigs=13~340442-342445 DUF2894 PF11445.3 g34629.t1 - 6 7 9.2 0.27 11.4 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:89720-91035 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~89720-91035 MCPVI PF02993.9 g14455.t1 - 2 8.5 7 2.3 8.2 4.8 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:459012-459491 Augustus predicted protein sequence Tomato scaffold594_contigs=19~459012-459491 Eno-Rase_NADH_b PF12242.3 g16948.t1 - 0.048 13.4 0.1 0.078 12.7 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:165476-166105 Augustus predicted protein sequence Tomato scaffold687_contigs=8~165476-166105 Axin_b-cat_bind PF08833.5 g77066.t1 - 0.11 12.2 0.2 0.11 12.2 0.1 1.7 2 0 0 2 2 2 0 Axin beta-catenin binding domain | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:20142-20396 Augustus predicted protein sequence Tomato scaffold2647_contigs=26~20142-20396 ATHILA PF03078.10 g33683.t1 - 0.000046 22.1 0 0.000058 21.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:479546-480070 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~479546-480070 TLD PF07534.11 g72807.t1 - 0.021 14.8 0 0.023 14.7 0 1.1 1 0 0 1 1 1 0 TLD | Ref_seq=scaffold2430_contigs=3, transcript_loc=scaffold2430_contigs=3:1-749 Augustus predicted protein sequence Tomato scaffold2430_contigs=3~1-749 Metallothio PF00131.15 g44075.t1 - 0.38 10.6 9.6 0.45 10.4 6.7 1.1 1 0 0 1 1 1 0 Metallothionein | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:539-742 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~539-742 PMD PF10536.4 g40135.t1 - 0.0051 15.8 0.1 0.0067 15.4 0.1 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:141677-142853 Augustus predicted protein sequence Tomato scaffold1292_contigs=11~141677-142853 BNIP3 PF06553.7 g6073.t1 - 0.11 11.8 0 0.15 11.4 0 1.1 1 0 0 1 1 1 0 BNIP3 | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:9569-9859 Augustus predicted protein sequence Tomato scaffold350_contigs=4~9569-9859 MYT1 PF08474.6 g51212.t1 - 0.11 11.9 0.1 1.3 8.4 0 2 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:15798-16259 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~15798-16259 T2SN PF01203.14 g45801.t1 - 0.00037 20.1 0.2 0.00047 19.8 0.1 1.2 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein N | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:71137-71667 Augustus predicted protein sequence Tomato scaffold1464_contigs=11~71137-71667 gag-asp_proteas PF13975.1 g5857.t1 - 0.026 14.3 0 0.064 13 0 1.7 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold342_contigs=3, transcript_loc=scaffold342_contigs=3:3010-4097 Augustus predicted protein sequence Tomato scaffold342_contigs=3~3010-4097 Aldolase_II PF00596.16 g87646.t1 - 0.057 13 0 0.076 12.6 0 1.1 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain | Ref_seq=scaffold3534_contigs=1, transcript_loc=scaffold3534_contigs=1:1-1224 Augustus predicted protein sequence Tomato scaffold3534_contigs=1~1-1224 PMD PF10536.4 g84673.t1 - 0.0081 15.1 0 0.012 14.6 0 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:25010-28415 Augustus predicted protein sequence Tomato scaffold2777_contigs=1~25010-28415 HMA PF00403.21 g84619.t1 - 0.031 14.4 0.1 0.064 13.4 0.1 1.4 1 0 0 1 1 1 0 Heavy-metal-associated domain | Ref_seq=scaffold2775_contigs=1, transcript_loc=scaffold2775_contigs=1:82606-84319 Augustus predicted protein sequence Tomato scaffold2775_contigs=1~82606-84319 UCR_6-4kD PF08997.5 g53961.t1 - 0.24 11.1 0.8 5.5 6.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:99498-99923 Augustus predicted protein sequence Tomato scaffold1709_contigs=7~99498-99923 ATG16 PF08614.6 g40235.t1 - 0.0075 16.1 8.5 0.014 15.2 5.9 1.4 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1296_contigs=2, transcript_loc=scaffold1296_contigs=2:26304-27038 Augustus predicted protein sequence Tomato scaffold1296_contigs=2~26304-27038 M PF02370.11 g18436.t1 - 2.7 8.6 5.9 25 5.7 2.4 2.5 2 0 0 2 2 2 0 M protein repeat | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:29569-30066 Augustus predicted protein sequence Tomato scaffold724_contigs=4~29569-30066 MarR PF01047.17 g47110.t1 - 0.016 14.9 0 0.053 13.2 0 1.9 1 1 1 2 2 2 0 MarR family | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:573791-574123 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~573791-574123 SPC25 PF06703.6 g16400.t1 - 0.042 13.4 0 0.073 12.6 0 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:77869-79891 Augustus predicted protein sequence Tomato scaffold670_contigs=7~77869-79891 DUF4201 PF13870.1 g87455.t1 - 0.019 14.4 1.4 0.081 12.3 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold3100_contigs=1, transcript_loc=scaffold3100_contigs=1:3244-3708 Augustus predicted protein sequence Tomato scaffold3100_contigs=1~3244-3708 RVT_3 PF13456.1 g81842.t1 - 0.00039 20.1 0.1 0.00051 19.7 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1035676-1035939 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~1035676-1035939 MRL1 PF13003.2 g26097.t1 - 0.12 12.1 0 0.13 12 0 1.2 1 0 0 1 1 1 0 Ribosomal protein L1 | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:23174-23864 Augustus predicted protein sequence Tomato scaffold943_contigs=4~23174-23864 Cytadhesin_P30 PF07271.6 g49304.t1 - 0.083 12.1 7.2 0.13 11.5 5 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:71086-73585 Augustus predicted protein sequence Tomato scaffold1532_contigs=5~71086-73585 UPF0547 PF10571.4 g7199.t1 - 0.0000012 28 1 0.044 13.4 0 2.5 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:5694-6262 Augustus predicted protein sequence Tomato scaffold389_contigs=8~5694-6262 MIB_HERC2 PF06701.8 g17038.t1 - 0.1 12.5 9.4 0.93 9.5 1.7 2.6 2 1 0 2 2 2 0 Mib_herc2 | Ref_seq=scaffold692_contigs=2, transcript_loc=scaffold692_contigs=2:2060-2831 Augustus predicted protein sequence Tomato scaffold692_contigs=2~2060-2831 DUF1985 PF09331.6 g3638.t1 - 1.8E-009 37.5 0 6.4E-009 35.7 0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:79400-80426 Augustus predicted protein sequence Tomato scaffold279_contigs=4~79400-80426 zf-CCHC_5 PF14787.1 g39217.t1 - 0.01 15.3 3.6 0.019 14.4 2.5 1.5 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:353773-354063 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~353773-354063 SR-25 PF10500.4 g41025.t1 - 5.4 6.4 12.7 6.1 6.2 8.8 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:100852-101136 Augustus predicted protein sequence Tomato scaffold1320_contigs=26~100852-101136 TP2 PF01254.13 g20117.t1 - 0.069 13.4 7.7 0.034 14.4 3.5 1.7 2 0 0 2 2 2 0 Nuclear transition protein 2 | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:353028-353709 Augustus predicted protein sequence Tomato scaffold767_contigs=5~353028-353709 RVT_3 PF13456.1 g39928.t1 - 0.0000016 27.7 0.1 0.054 13.2 0 2.3 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:38320-39109 Augustus predicted protein sequence Tomato scaffold1283_contigs=15~38320-39109 Herpes_IE68 PF02479.11 g28538.t1 - 0.036 13.2 0.1 0.11 11.6 0 1.8 2 0 0 2 2 2 0 Herpesvirus immediate early protein | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:292932-293492 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~292932-293492 GRA6 PF05084.8 g18505.t1 - 0.014 14.9 1.3 0.025 14.1 0.9 1.4 1 0 0 1 1 1 0 Granule antigen protein (GRA6) | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:148605-148937 Augustus predicted protein sequence Tomato scaffold725_contigs=8~148605-148937 zf-CCHC_3 PF13917.1 g56250.t1 - 0.0049 16.5 0.5 0.0091 15.7 0.3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:70659-70952 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~70659-70952 Ribosomal_60s PF00428.14 g72794.t1 - 0.083 13.2 0.7 0.092 13.1 0.5 1.1 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:121235-121583 Augustus predicted protein sequence Tomato scaffold2426_contigs=10~121235-121583 YdjO PF14169.1 g2338.t1 - 0.0011 18.3 0.9 0.0024 17.2 0.6 1.5 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:150481-153251 Augustus predicted protein sequence Tomato scaffold234_contigs=2~150481-153251 DUF4237 PF14021.1 g25086.t1 - 0.063 13.5 0 1.9 8.7 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4237) | Ref_seq=scaffold912_contigs=2, transcript_loc=scaffold912_contigs=2:348-1314 Augustus predicted protein sequence Tomato scaffold912_contigs=2~348-1314 Cnl2_NKP2 PF09447.5 g46493.t1 - 0.14 11.8 0 0.22 11.1 0 1.4 1 0 0 1 1 1 0 Cnl2/NKP2 family protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:274799-275217 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~274799-275217 DUF1985 PF09331.6 g1375.t1 - 0.00000099 28.6 0 0.0000013 28.2 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:37148-38202 Augustus predicted protein sequence Tomato scaffold200_contigs=3~37148-38202 CholecysA-Rec_N PF09193.5 g50359.t1 - 0.11 12.3 0.3 0.41 10.5 0 2 2 0 0 2 2 2 0 Cholecystokinin A receptor, N-terminal | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:162414-163272 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~162414-163272 HAP1_N PF04849.8 g62248.t1 - 0.012 14.5 3.8 0.016 14.1 2.6 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:272840-274914 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~272840-274914 DUF2910 PF11139.3 g69758.t1 - 0.049 12.7 0.6 0.062 12.4 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:758937-759311 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~758937-759311 DUF1347 PF07079.6 g65664.t1 - 0.012 13.8 0.1 0.015 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:82641-83093 Augustus predicted protein sequence Tomato scaffold2136_contigs=4~82641-83093 DUF4631 PF15450.1 g52101.t1 - 0.0000057 24.8 3.1 0.0000065 24.7 2.1 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4631) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:47052-47537 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~47052-47537 Spike_rec_bind PF09408.5 g15666.t1 - 0.044 13.2 0.6 0.052 13 0.4 1 1 0 0 1 1 1 0 Spike receptor binding domain | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:2498-2800 Augustus predicted protein sequence Tomato scaffold640_contigs=3~2498-2800 Protocadherin PF08374.6 g79351.t1 - 0.012 15.2 0.8 0.015 14.9 0.5 1.1 1 0 0 1 1 1 0 Protocadherin | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:65559-67578 Augustus predicted protein sequence Tomato scaffold2693_contigs=8~65559-67578 GRP PF07172.6 g14897.t1 - 0.00039 20.8 6 0.068 13.6 0.5 2.2 1 1 1 2 2 2 2 Glycine rich protein family | Ref_seq=scaffold609_contigs=4, transcript_loc=scaffold609_contigs=4:66192-68999 Augustus predicted protein sequence Tomato scaffold609_contigs=4~66192-68999 PhaP_Bmeg PF09602.5 g46102.t1 - 0.027 14.2 0.6 0.031 14 0.4 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:64281-64568 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~64281-64568 RNase_H2-Ydr279 PF09468.5 g79754.t1 - 0.095 11.8 4 0.098 11.8 2.8 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:511022-511426 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~511022-511426 DUF3511 PF12023.3 g31126.t1 - 0.0000002 30.1 0 0.014 14.6 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3511) | Ref_seq=scaffold1057_contigs=2, transcript_loc=scaffold1057_contigs=2:1-1467 Augustus predicted protein sequence Tomato scaffold1057_contigs=2~1-1467 UBN2 PF14223.1 g45756.t1 - 0.011 15.5 0.2 0.13 12 0 2 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1460_contigs=7, transcript_loc=scaffold1460_contigs=7:107852-108353 Augustus predicted protein sequence Tomato scaffold1460_contigs=7~107852-108353 DUF374 PF04028.8 g67519.t1 - 0.027 13.7 0.5 0.053 12.7 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF374) | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:154720-155280 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~154720-155280 DUF4479 PF14794.1 g1235.t1 - 0.062 12.8 0.7 4.9 6.7 0.1 3 3 0 0 3 3 3 0 Domain of unknown function (DUF4479) | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:84664-85011 Augustus predicted protein sequence Tomato scaffold194_contigs=2~84664-85011 Glycohydro_20b2 PF14845.1 g72273.t1 - 0.16 12.6 1.8 3 8.5 0.1 2.1 1 1 1 2 2 2 0 beta-acetyl hexosaminidase like | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:894916-897401 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~894916-897401 CAP_N PF01213.14 g40337.t1 - 1.3 8.2 6.5 2.3 7.4 4.5 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:185591-187065 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~185591-187065 UBN2_3 PF14244.1 g43398.t1 - 0.095 12.2 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:370651-371947 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~370651-371947 Retrotrans_gag PF03732.12 g72068.t1 - 0.13 12.3 0.1 0.16 12 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:146305-146556 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~146305-146556 PsbT PF01405.12 g11627.t1 - 0.12 11.9 0.1 0.26 10.8 0 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre T protein | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:122044-122448 Augustus predicted protein sequence Tomato scaffold528_contigs=4~122044-122448 DEC-1_N PF04625.8 g67383.t1 - 8.1 5 7.6 11 4.5 5.3 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:168096-173250 Augustus predicted protein sequence Tomato scaffold2182_contigs=7~168096-173250 Sigma54_AID PF00309.15 g20885.t1 - 0.0077 15.6 0.5 14 5.2 0 3.1 3 0 0 3 3 3 2 Sigma-54 factor, Activator interacting domain (AID) | Ref_seq=scaffold782_contigs=17, transcript_loc=scaffold782_contigs=17:393865-395333 Augustus predicted protein sequence Tomato scaffold782_contigs=17~393865-395333 Matrilin_ccoil PF10393.4 g12073.t1 - 0.014 14.7 0 0.024 14 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold536_contigs=1, transcript_loc=scaffold536_contigs=1:650-1053 Augustus predicted protein sequence Tomato scaffold536_contigs=1~650-1053 ATHILA PF03078.10 g37227.t1 - 0.00051 18.7 0.2 0.19 10.3 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:57666-58271 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~57666-58271 ATHILA PF03078.10 g55318.t1 - 0.1 11.1 0 0.12 10.8 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:821592-822026 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~821592-822026 Cytadhesin_P30 PF07271.6 g21896.t1 - 8.2 5.6 12.3 8.3 5.5 8.5 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:198713-199659 Augustus predicted protein sequence Tomato scaffold817_contigs=11~198713-199659 DUF4170 PF13773.1 g36156.t1 - 0.016 15 0.1 8.2 6.4 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4170) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:537665-538390 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~537665-538390 IL5 PF02025.10 g77016.t1 - 0.08 12.9 0 0.1 12.6 0 1.1 1 0 0 1 1 1 0 Interleukin 5 | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:44951-45226 Augustus predicted protein sequence Tomato scaffold2644_contigs=21~44951-45226 LRRNT PF01462.13 g5905.t1 - 0.78 9.2 2.6 1 8.8 0.3 2.1 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:87525-88237 Augustus predicted protein sequence Tomato scaffold344_contigs=14~87525-88237 TRH PF05438.7 g20322.t1 - 0.066 12.6 0.2 0.082 12.2 0.1 1.2 1 0 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:37262-37798 Augustus predicted protein sequence Tomato scaffold773_contigs=6~37262-37798 Tropomyosin PF00261.15 g37235.t1 - 0.13 11.2 0.1 0.19 10.7 0.1 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:80076-85283 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~80076-85283 DUF730 PF05325.6 g87735.t1 - 0.12 12.2 0.4 23 4.7 0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF730) | Ref_seq=scaffold3820_contigs=1, transcript_loc=scaffold3820_contigs=1:210-1970 Augustus predicted protein sequence Tomato scaffold3820_contigs=1~210-1970 U6-snRNA_bdg PF10596.4 g32922.t1 - 0.086 12.2 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 U6-snRNA interacting domain of PrP8 | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:420448-421068 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~420448-421068 Cnd1_N PF12922.2 g22088.t1 - 0.7 9.5 5.4 0.49 10 2.6 1.5 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1, N-term | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:4299-5457 Augustus predicted protein sequence Tomato scaffold819_contigs=1~4299-5457 MarC PF01914.12 g41093.t1 - 0.0085 15.2 0.5 0.62 9.1 0 2 1 1 1 2 2 2 2 MarC family integral membrane protein | Ref_seq=scaffold1321_contigs=4, transcript_loc=scaffold1321_contigs=4:13938-16852 Augustus predicted protein sequence Tomato scaffold1321_contigs=4~13938-16852 DUF1795 PF08786.6 g1008.t1 - 0.014 15.2 0 0.016 15 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1795) | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:191695-192346 Augustus predicted protein sequence Tomato scaffold184_contigs=2~191695-192346 Ctf8 PF09696.5 g64993.t1 - 0.011 15.4 0.1 2.2 8.1 0 2.1 2 0 0 2 2 2 0 Ctf8 | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:1154-1850 Augustus predicted protein sequence Tomato scaffold2109_contigs=23~1154-1850 Casc1 PF12366.3 g6026.t1 - 0.12 11.8 0.5 0.11 11.9 0.4 1.1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:66322-66564 Augustus predicted protein sequence Tomato scaffold346_contigs=1~66322-66564 Anticodon_1 PF08264.8 g66320.t1 - 0.038 13.7 0.1 0.043 13.5 0.1 1.1 1 0 0 1 1 1 0 Anticodon-binding domain of tRNA | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:24788-25117 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~24788-25117 DUF1985 PF09331.6 g37538.t1 - 0.11 12.3 1.2 1.1 9.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:126714-129073 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~126714-129073 Omega-toxin PF06357.6 g7537.t1 - 0.034 13.7 4.7 0.11 12.1 3.3 1.8 1 0 0 1 1 1 0 Omega-atracotoxin | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:97751-98488 Augustus predicted protein sequence Tomato scaffold404_contigs=9~97751-98488 Shisa PF13908.1 g63225.t1 - 0.13 12.4 3.5 0.16 12.1 2.4 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:75234-75563 Augustus predicted protein sequence Tomato scaffold2032_contigs=5~75234-75563 DUF128 PF01995.11 g79501.t1 - 0.0065 15.4 1.1 9.3 5.1 0 3.1 3 0 0 3 3 3 3 Domain of unknown function DUF128 | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:55069-58853 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~55069-58853 YjeF_N PF03853.10 g29766.t1 - 0.14 11.7 0 0.18 11.3 0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:31702-32028 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~31702-32028 Med15 PF09606.5 g2925.t1 - 0.76 7.9 10.4 0.88 7.6 7.2 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:122294-122635 Augustus predicted protein sequence Tomato scaffold257_contigs=2~122294-122635 Mito_fiss_reg PF05308.6 g64161.t1 - 0.19 11 0.6 0.22 10.8 0.4 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:322286-322624 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~322286-322624 Amidase PF01425.16 g85382.t1 - 4.2 6.1 5.5 4.8 5.9 3.8 1.1 1 0 0 1 1 1 0 Amidase | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:29234-30067 Augustus predicted protein sequence Tomato scaffold2802_contigs=1~29234-30067 Cytadhesin_P30 PF07271.6 g68957.t1 - 0.1 11.8 0.6 0.16 11.1 0.4 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:211378-216913 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~211378-216913 ATHILA PF03078.10 g63254.t1 - 0.000003 26.1 0 0.0000033 25.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:36901-37116 Augustus predicted protein sequence Tomato scaffold2033_contigs=2~36901-37116 Cytadhesin_P30 PF07271.6 g12687.t1 - 6.3 5.9 8.3 7.5 5.7 5.8 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:777580-781924 Augustus predicted protein sequence Tomato scaffold556_contigs=11~777580-781924 CorA PF01544.13 g51140.t1 - 0.0015 17.6 0.8 0.0016 17.5 0.5 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:32831-35031 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~32831-35031 Gag_spuma PF03276.9 g60819.t1 - 0.0046 15.3 2.1 0.0051 15.2 1.5 1 1 0 0 1 1 1 1 Spumavirus gag protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:453883-454182 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~453883-454182 Tropomyosin PF00261.15 g16099.t1 - 0.015 14.4 1.1 0.019 14 0.8 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:315120-315407 Augustus predicted protein sequence Tomato scaffold654_contigs=10~315120-315407 DUF3396 PF11876.3 g28692.t1 - 0.11 11.5 3.2 5.6 6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3396) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:52590-56949 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~52590-56949 PSD2 PF07624.6 g17922.t1 - 0.16 11.6 0.8 0.33 10.6 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:156307-157830 Augustus predicted protein sequence Tomato scaffold717_contigs=7~156307-157830 HXXSHH PF07586.6 g27527.t1 - 0.039 12.8 0.1 0.051 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:430288-433429 Augustus predicted protein sequence Tomato scaffold980_contigs=13~430288-433429 Adeno_E1A PF02703.9 g41447.t1 - 0.13 11.6 1.1 0.15 11.4 0.8 1.1 1 0 0 1 1 1 0 Early E1A protein | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:31758-32111 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~31758-32111 CRAL_TRIO_N PF03765.10 g50353.t1 - 0.17 12 0.3 0.34 11 0.2 1.5 1 0 0 1 1 1 0 CRAL/TRIO, N-terminal domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:140369-140711 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~140369-140711 DUF3123 PF11321.3 g66862.t1 - 0.029 14.6 1 0.034 14.4 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3123) | Ref_seq=scaffold2171_contigs=2, transcript_loc=scaffold2171_contigs=2:108372-108717 Augustus predicted protein sequence Tomato scaffold2171_contigs=2~108372-108717 DUF3317 PF11779.3 g35560.t1 - 3.5 7.1 6.8 1.4 8.3 0.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3317) | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:600593-601015 Augustus predicted protein sequence Tomato scaffold1181_contigs=35~600593-601015 Cnd2 PF05786.9 g47675.t1 - 0.12 10.8 0 0.13 10.7 0 1 1 0 0 1 1 1 0 Condensin complex subunit 2 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:114606-114845 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~114606-114845 DUF1985 PF09331.6 g18997.t1 - 0.00019 21.2 0 0.0004 20.2 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:76837-77712 Augustus predicted protein sequence Tomato scaffold742_contigs=5~76837-77712 Neur_chan_memb PF02932.11 g49703.t1 - 0.15 11.9 1.2 0.19 11.5 0.8 1.2 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:38861-40274 Augustus predicted protein sequence Tomato scaffold1548_contigs=4~38861-40274 DASH_Spc19 PF08287.6 g24560.t1 - 0.36 10.4 2.1 0.49 9.9 1.4 1.3 1 1 0 1 1 1 0 Spc19 | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:59373-59966 Augustus predicted protein sequence Tomato scaffold888_contigs=4~59373-59966 DUF3022 PF11226.3 g78497.t1 - 0.091 12.6 0 0.12 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3022) | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:133925-134755 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~133925-134755 UBN2 PF14223.1 g72382.t1 - 0.023 14.4 0.1 0.054 13.2 0 1.6 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1253690-1254094 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1253690-1254094 PP2 PF14299.1 g26936.t1 - 0.00069 19 0 0.0013 18.1 0 1.3 1 1 0 1 1 1 1 Phloem protein 2 | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:109878-112130 Augustus predicted protein sequence Tomato scaffold962_contigs=5~109878-112130 DUF3663 PF12404.3 g68304.t1 - 1.5 8.6 4.7 5.4 6.8 0.6 2.3 2 1 0 2 2 2 0 Peptidase | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:219625-222111 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~219625-222111 CUE PF02845.11 g608.t1 - 0.1 12 0 0.16 11.4 0 1.3 1 0 0 1 1 1 0 CUE domain | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:66402-66728 Augustus predicted protein sequence Tomato scaffold66_contigs=5~66402-66728 DUF4430 PF14478.1 g29627.t1 - 0.067 13.2 0 0.091 12.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:315332-315601 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~315332-315601 RALF PF05498.6 g38969.t1 - 0.03 15.1 1.8 0.032 15 0.6 1.6 1 1 0 1 1 1 0 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold1260_contigs=17, transcript_loc=scaffold1260_contigs=17:43172-43516 Augustus predicted protein sequence Tomato scaffold1260_contigs=17~43172-43516 COPI_C PF06957.6 g43295.t1 - 3.3 6.1 5.4 3.4 6 3.7 1 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:381435-381830 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~381435-381830 CTD PF12815.2 g41422.t1 - 0.16 12.3 0.2 0.25 11.7 0.1 1.4 1 0 0 1 1 1 0 Spt5 C-terminal nonapeptide repeat binding Spt4 | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:91654-97540 Augustus predicted protein sequence Tomato scaffold1332_contigs=3~91654-97540 FoP_duplication PF13865.1 g58772.t1 - 0.0029 18 1.8 0.0035 17.7 1.2 1.1 1 0 0 1 1 1 1 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:163296-163502 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~163296-163502 Seryl_tRNA_N PF02403.17 g65625.t1 - 0.08 12.9 6 0.17 11.8 4.2 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2135_contigs=3, transcript_loc=scaffold2135_contigs=3:15883-16757 Augustus predicted protein sequence Tomato scaffold2135_contigs=3~15883-16757 DUF3845 PF12956.2 g12055.t1 - 0.11 11.9 0.5 0.18 11.1 0.3 1.4 1 1 0 1 1 1 0 Domain of Unknown Function with PDB structure | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:279946-280332 Augustus predicted protein sequence Tomato scaffold535_contigs=8~279946-280332 DZR PF12773.2 g62539.t1 - 0.037 13.8 1.7 0.066 13 1.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:95889-97022 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~95889-97022 TGS PF02824.16 g40049.t1 - 0.022 14.5 0 0.035 13.9 0 1.3 1 0 0 1 1 1 0 TGS domain | Ref_seq=scaffold1290_contigs=9, transcript_loc=scaffold1290_contigs=9:95990-100005 Augustus predicted protein sequence Tomato scaffold1290_contigs=9~95990-100005 DUF2264 PF10022.4 g8580.t1 - 0.074 11.6 0.8 0.093 11.3 0.5 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:71355-72545 Augustus predicted protein sequence Tomato scaffold429_contigs=9~71355-72545 HTH_37 PF13744.1 g44438.t1 - 0.094 12.5 0 5.6 6.8 0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:206494-206809 Augustus predicted protein sequence Tomato scaffold1429_contigs=14~206494-206809 TPR_MLP1_2 PF07926.7 g23085.t1 - 0.021 14.5 5.1 0.037 13.7 3.5 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:92833-98975 Augustus predicted protein sequence Tomato scaffold848_contigs=10~92833-98975 Fer2_BFD PF04324.10 g63539.t1 - 0.00042 20.2 0.1 0.00057 19.8 0 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:405252-405854 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~405252-405854 TSC22 PF01166.13 g51927.t1 - 0.083 12.8 3.7 0.35 10.8 1 2.8 2 1 1 3 3 3 0 TSC-22/dip/bun family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:19597-25136 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~19597-25136 zf-CCHC PF00098.18 g60684.t1 - 0.22 11.5 3.3 0.47 10.4 2.3 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1957_contigs=3, transcript_loc=scaffold1957_contigs=3:68396-68766 Augustus predicted protein sequence Tomato scaffold1957_contigs=3~68396-68766 Tropomyosin PF00261.15 g48380.t1 - 0.02 13.9 0.2 0.024 13.7 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:168556-169038 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~168556-169038 RVP_2 PF08284.6 g9696.t1 - 0.0002 21.3 0 0.00027 20.8 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:107829-108495 Augustus predicted protein sequence Tomato scaffold469_contigs=1~107829-108495 DUF3338 PF11819.3 g12797.t1 - 0.072 12.5 0.1 0.081 12.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3338) | Ref_seq=scaffold560_contigs=4, transcript_loc=scaffold560_contigs=4:46417-46749 Augustus predicted protein sequence Tomato scaffold560_contigs=4~46417-46749 IBV_3A PF03617.8 g38890.t1 - 0.051 13.3 0.6 0.092 12.5 0.4 1.5 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1254_contigs=5, transcript_loc=scaffold1254_contigs=5:24024-24431 Augustus predicted protein sequence Tomato scaffold1254_contigs=5~24024-24431 LEAP-2 PF07359.6 g25581.t1 - 0.012 15.2 0.2 0.018 14.6 0.2 1.2 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:312278-315919 Augustus predicted protein sequence Tomato scaffold929_contigs=9~312278-315919 DUF2103 PF09876.4 g82183.t1 - 0.12 12 0 0.18 11.5 0 1.4 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2103) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:622796-623098 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~622796-623098 DUF939 PF06081.6 g47281.t1 - 0.18 11.6 1.7 0.18 11.6 0.2 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF939) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:55827-56510 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~55827-56510 NOA36 PF06524.7 g59190.t1 - 0.25 10.5 6.7 0.29 10.3 4.6 1.1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1901_contigs=10, transcript_loc=scaffold1901_contigs=10:82030-82383 Augustus predicted protein sequence Tomato scaffold1901_contigs=10~82030-82383 Sigma_reg_C PF13791.1 g25635.t1 - 0.029 14.4 0 0.036 14.1 0 1.1 1 0 0 1 1 1 0 Sigma factor regulator C-terminal | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:72028-73149 Augustus predicted protein sequence Tomato scaffold930_contigs=4~72028-73149 DUF2360 PF10152.4 g58835.t1 - 5 7.4 6.5 5.8 7.1 0.5 2.6 2 1 1 3 3 3 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:7754-14253 Augustus predicted protein sequence Tomato scaffold1877_contigs=4~7754-14253 MelC1 PF06236.6 g73660.t1 - 0.094 12.7 0 8.6 6.3 0 2.2 2 0 0 2 2 2 0 Tyrosinase co-factor MelC1 | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:15782-18411 Augustus predicted protein sequence Tomato scaffold2491_contigs=9~15782-18411 zf-CCHC_5 PF14787.1 g68986.t1 - 0.0003 20.2 1.7 0.00048 19.5 1.2 1.4 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2244_contigs=2, transcript_loc=scaffold2244_contigs=2:1-325 Augustus predicted protein sequence Tomato scaffold2244_contigs=2~1-325 zf-CCHC PF00098.18 g62837.t1 - 0.00013 21.7 0.8 0.00022 20.9 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:32707-33330 Augustus predicted protein sequence Tomato scaffold2011_contigs=8~32707-33330 V_ATPase_I PF01496.14 g65601.t1 - 0.025 12.4 5.9 0.03 12.1 4.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:101429-102937 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~101429-102937 NESP55 PF06390.7 g82560.t1 - 0.019 14.3 3.1 0.019 14.3 2.1 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:82699-83172 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~82699-83172 DUF4248 PF14053.1 g49735.t1 - 0.015 14.8 0 0.032 13.7 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:53216-54316 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~53216-54316 MHCassoc_trimer PF08831.5 g22470.t1 - 0.069 13 1 0.13 12 0.7 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:130112-130989 Augustus predicted protein sequence Tomato scaffold830_contigs=3~130112-130989 TIMELESS_C PF05029.8 g43388.t1 - 2.9 6.7 6.5 3.2 6.5 4.5 1 1 0 0 1 1 1 0 Timeless protein C terminal region | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:316967-318877 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~316967-318877 2Fe-2S_Ferredox PF11591.3 g71257.t1 - 0.38 10.4 2.9 1.2 8.8 2 1.9 1 1 0 1 1 1 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold2364_contigs=4, transcript_loc=scaffold2364_contigs=4:62881-69087 Augustus predicted protein sequence Tomato scaffold2364_contigs=4~62881-69087 THOC7 PF05615.8 g43466.t1 - 0.0089 16.2 1.2 0.01 16.1 0.9 1.1 1 0 0 1 1 1 1 Tho complex subunit 7 | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:158872-164314 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~158872-164314 TT_ORF2 PF02957.10 g40587.t1 - 0.0095 16.6 0.5 0.013 16.2 0.3 1.3 1 0 0 1 1 1 1 TT viral ORF2 | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:169433-169810 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~169433-169810 DUF4172 PF13776.1 g406.t1 - 0.081 13 2.6 0.67 10 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:22546-23127 Augustus predicted protein sequence Tomato scaffold31_contigs=1~22546-23127 PPK2 PF03976.9 g36696.t1 - 0.042 13.1 0.1 0.06 12.6 0.1 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:213613-213987 Augustus predicted protein sequence Tomato scaffold1207_contigs=28~213613-213987 Rep_fac-A_C PF08646.5 g67836.t1 - 0.043 13.5 0.2 0.061 13 0.1 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:180552-181763 Augustus predicted protein sequence Tomato scaffold2197_contigs=7~180552-181763 WEMBL PF05701.6 g33454.t1 - 0.0000013 27.1 3.1 0.0000018 26.7 2.2 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1130_contigs=3, transcript_loc=scaffold1130_contigs=3:19995-21321 Augustus predicted protein sequence Tomato scaffold1130_contigs=3~19995-21321 ComK PF06338.6 g48649.t1 - 0.0078 15.6 0 0.009 15.4 0 1.1 1 0 0 1 1 1 1 ComK protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:617236-617565 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~617236-617565 CI-B14_5a PF07347.7 g38148.t1 - 0.11 12.3 0 0.2 11.4 0 1.4 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:385055-389156 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~385055-389156 SBDS PF01172.13 g38679.t1 - 0.11 12.2 0.1 0.17 11.7 0 1.3 1 1 0 1 1 1 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:88697-91717 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~88697-91717 RNA_pol_3_Rpc31 PF11705.3 g65612.t1 - 0.49 10.3 6.3 0.47 10.3 4.4 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:120640-120867 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~120640-120867 FH2 PF02181.18 g65791.t1 - 0.0092 14.8 0 0.011 14.6 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2140_contigs=3, transcript_loc=scaffold2140_contigs=3:5137-5550 Augustus predicted protein sequence Tomato scaffold2140_contigs=3~5137-5550 MerR-DNA-bind PF09278.6 g36932.t1 - 0.1 13 0.1 0.17 12.2 0 1.4 1 0 0 1 1 1 0 MerR, DNA binding | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:172604-173617 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~172604-173617 Clusterin PF01093.12 g10841.t1 - 0.047 12.5 0.9 0.066 12 0.6 1.1 1 0 0 1 1 1 0 Clusterin | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:40493-41840 Augustus predicted protein sequence Tomato scaffold508_contigs=9~40493-41840 TT_ORF1 PF02956.9 g64774.t1 - 2.9 6.2 6.6 3 6.2 4.6 1.1 1 0 0 1 1 1 0 TT viral orf 1 | Ref_seq=scaffold2096_contigs=7, transcript_loc=scaffold2096_contigs=7:23895-24299 Augustus predicted protein sequence Tomato scaffold2096_contigs=7~23895-24299 Leader_Trp PF08255.6 g23404.t1 - 0.039 13.6 0.8 0.13 11.9 0.5 1.9 1 0 0 1 1 1 0 Trp-operon Leader Peptide | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:93493-94344 Augustus predicted protein sequence Tomato scaffold859_contigs=6~93493-94344 DUF1510 PF07423.6 g29820.t1 - 0.68 9.2 22 1 8.6 15.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:189323-192162 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~189323-192162 DUF4228 PF14009.1 g32783.t1 - 0.00000016 31.6 0.5 0.000089 22.7 0.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4228) | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1184312-1184635 Augustus predicted protein sequence Tomato scaffold1108_contigs=23~1184312-1184635 FH2 PF02181.18 g73342.t1 - 0.099 11.5 0 0.14 11 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:230559-232615 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~230559-232615 IMS_HHH PF11798.3 g52827.t1 - 0.072 13.1 0.4 11 6.2 0 2.4 2 0 0 2 2 2 0 IMS family HHH motif | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:99135-100058 Augustus predicted protein sequence Tomato scaffold1648_contigs=6~99135-100058 G6PD_bact PF10786.4 g61710.t1 - 0.017 14.5 0 0.019 14.4 0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:199311-199667 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~199311-199667 Baculo_ME53 PF06061.6 g62182.t1 - 0.0018 17.3 1.4 0.3 10 0.1 2.2 2 0 0 2 2 2 2 Baculoviridae ME53 | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:1-2829 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~1-2829 RNase_P_pop3 PF08228.6 g46866.t1 - 0.078 12.8 0.2 0.12 12.1 0.2 1.2 1 0 0 1 1 1 0 RNase P subunit Pop3 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:440035-442506 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~440035-442506 Dimer_Tnp_hAT PF05699.9 g17752.t1 - 0.00000018 30.6 0.1 0.00000042 29.5 0 1.6 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:128676-131756 Augustus predicted protein sequence Tomato scaffold714_contigs=9~128676-131756 TMEM247 PF15444.1 g31372.t1 - 0.18 11.6 5 0.18 11.6 3.4 1 1 0 0 1 1 1 0 Transmembrane protein 247 | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:51214-52093 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~51214-52093 Nucleoplasmin PF03066.10 g46.t1 - 0.033 13.7 0.2 0.045 13.2 0.2 1.3 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:25946-30253 Augustus predicted protein sequence Tomato scaffold3_contigs=2~25946-30253 TSGP1 PF07771.6 g39335.t1 - 0.048 13.5 0.5 0.082 12.7 0.3 1.4 1 0 0 1 1 1 0 Tick salivary peptide group 1 | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:505711-505974 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~505711-505974 RhaT PF06379.7 g7728.t1 - 0.05 12.5 0.4 0.057 12.3 0.3 1.1 1 0 0 1 1 1 0 L-rhamnose-proton symport protein (RhaT) | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:115655-115987 Augustus predicted protein sequence Tomato scaffold406_contigs=8~115655-115987 DUF2710 PF10921.3 g48192.t1 - 0.0053 16.8 0 0.0091 16.1 0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2710) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:183055-183642 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~183055-183642 FH2 PF02181.18 g41099.t1 - 0.062 12.1 0.3 0.12 11.2 0 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1323_contigs=1, transcript_loc=scaffold1323_contigs=1:6407-7234 Augustus predicted protein sequence Tomato scaffold1323_contigs=1~6407-7234 DUF3812 PF12757.2 g20602.t1 - 0.014 15.3 0.5 6.2 6.8 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3812) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:7871-8848 Augustus predicted protein sequence Tomato scaffold777_contigs=4~7871-8848 SLR1-BP PF07333.7 g81854.t1 - 0.021 15 4.9 0.044 14 3.4 1.5 1 1 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1091195-1094937 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~1091195-1094937 zf-CCHC PF00098.18 g34398.t1 - 0.068 13.1 0 0.11 12.5 0 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:248555-249498 Augustus predicted protein sequence Tomato scaffold1149_contigs=12~248555-249498 CENP-F_N PF10481.4 g70235.t1 - 0.15 11.3 0.5 0.18 11.1 0.3 1.1 1 0 0 1 1 1 0 Cenp-F N-terminal domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:18254-18691 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~18254-18691 IBV_3A PF03617.8 g44094.t1 - 0.039 13.7 1.2 0.063 13 0.8 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:62051-63999 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~62051-63999 Secretogranin_V PF05281.6 g68184.t1 - 0.045 13.1 0.1 0.083 12.2 0.1 1.5 1 1 0 1 1 1 0 Neuroendocrine protein 7B2 precursor (Secretogranin V) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:77682-80247 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~77682-80247 bZIP_2 PF07716.10 g76679.t1 - 0.085 12.6 2.4 0.23 11.3 1.7 1.7 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:312762-313157 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~312762-313157 DUF2647 PF10839.3 g62110.t1 - 0.13 12.3 1.9 0.21 11.6 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:7524-7862 Augustus predicted protein sequence Tomato scaffold1983_contigs=2~7524-7862 ROKNT PF08067.6 g39855.t1 - 7.2 6.5 7.4 16 5.4 0.6 2.2 2 0 0 2 2 2 0 ROKNT (NUC014) domain | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:102526-103036 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~102526-103036 Glyco_hydro_7 PF00840.15 g43658.t1 - 0.18 10.1 0.2 0.24 9.7 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 7 | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:274388-275749 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~274388-275749 Abhydrolase_2 PF02230.11 g65487.t1 - 0.012 15 1.6 8.5 5.7 0 3.1 1 1 2 3 3 3 0 Phospholipase/Carboxylesterase | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:221685-222176 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~221685-222176 ATHILA PF03078.10 g80255.t1 - 0.0016 17 0 0.2 10.1 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:899348-899722 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~899348-899722 EBV-NA3 PF05009.7 g7948.t1 - 0.35 10 1.6 0.37 9.9 1.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:115306-115533 Augustus predicted protein sequence Tomato scaffold411_contigs=3~115306-115533 Nitr_red_assoc PF09655.5 g19260.t1 - 0.083 13.2 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Conserved nitrate reductase-associated protein (Nitr_red_assoc) | Ref_seq=scaffold749_contigs=4, transcript_loc=scaffold749_contigs=4:500-1397 Augustus predicted protein sequence Tomato scaffold749_contigs=4~500-1397 DUF508 PF04370.7 g83976.t1 - 0.089 12.4 0.3 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF508) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:9594-9836 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~9594-9836 PMD PF10536.4 g53331.t1 - 0.000014 24.2 0.1 0.000014 24.2 0.1 2.8 1 1 3 4 4 4 1 Plant mobile domain | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:257882-260300 Augustus predicted protein sequence Tomato scaffold1689_contigs=11~257882-260300 DUF4435 PF14491.1 g75770.t1 - 0.02 14.7 0 6 6.6 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4435) | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:61766-62367 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~61766-62367 DUF1748 PF08520.5 g69073.t1 - 0.1 12.2 0 19 5 0 2.2 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1748) | Ref_seq=scaffold2252_contigs=4, transcript_loc=scaffold2252_contigs=4:1-787 Augustus predicted protein sequence Tomato scaffold2252_contigs=4~1-787 Tup_N PF08581.5 g24899.t1 - 0.0031 17.6 2.4 0.0031 17.6 1.6 1.8 2 0 0 2 2 2 1 Tup N-terminal | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:24606-25295 Augustus predicted protein sequence Tomato scaffold904_contigs=3~24606-25295 DUF4658 PF15555.1 g23076.t1 - 0.053 13.4 0.3 0.099 12.5 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4658) | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:62829-63802 Augustus predicted protein sequence Tomato scaffold848_contigs=10~62829-63802 Apolipoprotein PF01442.13 g28831.t1 - 0.0039 16.7 3.2 0.0039 16.7 2.2 1.5 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:482794-484361 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~482794-484361 DUF972 PF06156.8 g42239.t1 - 0.024 14.9 2.3 0.024 14.9 1.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:204768-205151 Augustus predicted protein sequence Tomato scaffold1349_contigs=8~204768-205151 Retrotrans_gag PF03732.12 g84353.t1 - 0.0015 18.5 0.3 0.0026 17.7 0.2 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:140383-141471 Augustus predicted protein sequence Tomato scaffold2767_contigs=1~140383-141471 HALZ PF02183.13 g83357.t1 - 0.069 12.8 0.7 0.069 12.8 0.5 3.3 2 2 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:194227-195455 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~194227-195455 CCDC92 PF14916.1 g62981.t1 - 0.2 11.2 2 0.39 10.3 1.4 1.4 1 0 0 1 1 1 0 Coiled-coil domain of unknown function | Ref_seq=scaffold2016_contigs=10, transcript_loc=scaffold2016_contigs=10:123934-124407 Augustus predicted protein sequence Tomato scaffold2016_contigs=10~123934-124407 Cortex-I_coil PF09304.5 g39236.t1 - 0.00011 22.2 11.2 0.00018 21.4 7.7 1.4 1 0 0 1 1 1 1 Cortexillin I, coiled coil | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:438712-439357 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~438712-439357 Y_phosphatase2 PF03162.8 g76571.t1 - 0.042 13.1 0 0.048 13 0 1.1 1 0 0 1 1 1 0 Tyrosine phosphatase family | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:113789-114186 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~113789-114186 ATHILA PF03078.10 g57946.t1 - 0.0012 17.4 0 0.0013 17.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:92673-92927 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~92673-92927 Snapin_Pallidin PF14712.1 g78065.t1 - 0.084 13.1 0 0.1 12.9 0 1.2 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:79092-79788 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~79092-79788 Borrelia_orfD PF02999.9 g75398.t1 - 0.043 13.9 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 Borrelia orf-D family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:240645-241052 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~240645-241052 RGS-like PF09128.6 g4595.t1 - 0.0056 16.2 0 1.5 8.3 0 2.2 2 0 0 2 2 2 2 Regulator of G protein signalling-like domain | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:44188-44902 Augustus predicted protein sequence Tomato scaffold304_contigs=1~44188-44902 APG17 PF04108.7 g50190.t1 - 0.001 17.9 0.3 0.0013 17.6 0.2 1 1 0 0 1 1 1 1 Autophagy protein Apg17 | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:175061-175501 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~175061-175501 Glyco_hydro_59 PF02057.10 g87753.t1 - 0.014 13.4 1.2 1.8 6.4 0.1 2 2 0 0 2 2 2 0 Glycosyl hydrolase family 59 | Ref_seq=scaffold3953_contigs=1, transcript_loc=scaffold3953_contigs=1:579-1322 Augustus predicted protein sequence Tomato scaffold3953_contigs=1~579-1322 HpaP PF09483.5 g61675.t1 - 0.38 10.6 4.3 0.47 10.3 3 1.1 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:53575-54035 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~53575-54035 DUF1003 PF06210.6 g56454.t1 - 0.0048 16.8 0.5 0.0066 16.3 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1003) | Ref_seq=scaffold1806_contigs=1, transcript_loc=scaffold1806_contigs=1:12134-12517 Augustus predicted protein sequence Tomato scaffold1806_contigs=1~12134-12517 TnpB_IS66 PF05717.8 g11549.t1 - 0.12 11.8 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 IS66 Orf2 like protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:384273-384557 Augustus predicted protein sequence Tomato scaffold525_contigs=12~384273-384557 Tat PF00539.13 g79456.t1 - 0.071 12.7 1.8 0.18 11.4 1.2 1.8 1 0 0 1 1 1 0 Transactivating regulatory protein (Tat) | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:129311-129715 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~129311-129715 DUF1032 PF06278.6 g49923.t1 - 0.94 7.8 17.4 1.2 7.4 12.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:626542-626877 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~626542-626877 IucA_IucC PF04183.7 g55736.t1 - 0.027 13.7 0 0.031 13.5 0 1.1 1 0 0 1 1 1 0 IucA / IucC family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:58313-58615 Augustus predicted protein sequence Tomato scaffold1765_contigs=2~58313-58615 RNA_capsid PF03035.9 g83878.t1 - 0.083 12.6 0.6 0.12 12.2 0.4 1.2 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2168845-2170292 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~2168845-2170292 DUF2724 PF10893.3 g74167.t1 - 0.043 13.6 0.1 0.079 12.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:146999-147328 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~146999-147328 Serglycin PF04360.7 g9249.t1 - 0.083 12.6 1.1 0.081 12.6 0.8 1.1 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:1-146 Augustus predicted protein sequence Tomato scaffold451_contigs=13~1-146 DNA_III_psi PF03603.8 g76645.t1 - 0.013 15.3 0.1 0.018 14.8 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase III psi subunit | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:156798-157127 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~156798-157127 Orthopox_F7 PF05813.7 g17588.t1 - 0.1 12.4 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Orthopoxvirus F7 protein | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:377358-378947 Augustus predicted protein sequence Tomato scaffold708_contigs=18~377358-378947 zf-BED PF02892.10 g22894.t1 - 0.0062 16.2 3 0.013 15.1 2.1 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold836_contigs=5, transcript_loc=scaffold836_contigs=5:103506-104020 Augustus predicted protein sequence Tomato scaffold836_contigs=5~103506-104020 AKNA PF12443.3 g85077.t1 - 0.067 13.2 1 0.12 12.3 0.7 1.4 1 0 0 1 1 1 0 AT-hook-containing transcription factor | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:69440-72967 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~69440-72967 DUF2872 PF11071.3 g61300.t1 - 0.11 12.3 0 0.13 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2872) | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:129986-130447 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~129986-130447 DUF2215 PF10225.4 g58054.t1 - 0.00064 19.2 1 0.00086 18.8 0.7 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:293418-293900 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~293418-293900 Myotub-related PF06602.9 g1977.t1 - 0.072 11.8 0 0.083 11.6 0 1.1 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:86993-88223 Augustus predicted protein sequence Tomato scaffold221_contigs=3~86993-88223 DUF755 PF05501.6 g69157.t1 - 0.017 15.1 6 0.029 14.4 4.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold2259_contigs=5, transcript_loc=scaffold2259_contigs=5:18868-19398 Augustus predicted protein sequence Tomato scaffold2259_contigs=5~18868-19398 EVE PF01878.13 g78673.t1 - 0.1 12.5 0.2 0.12 12.4 0.2 1.1 1 0 0 1 1 1 0 EVE domain | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:35889-36158 Augustus predicted protein sequence Tomato scaffold2674_contigs=11~35889-36158 zf-CCHC_3 PF13917.1 g54471.t1 - 0.0033 17.1 0.4 0.0098 15.6 0.3 1.9 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:187989-188501 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~187989-188501 ATP-synt_D PF01813.12 g32969.t1 - 0.0077 15.8 0.2 0.0088 15.6 0.2 1 1 0 0 1 1 1 1 ATP synthase subunit D | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:574322-574573 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~574322-574573 Phage_GP20 PF06810.6 g48459.t1 - 0.0058 16 5.9 0.0058 16 4.1 2.2 2 0 0 2 2 2 1 Phage minor structural protein GP20 | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:206540-210257 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~206540-210257 YicC_N PF03755.8 g37870.t1 - 0.11 12.3 4 0.24 11.3 2.8 1.6 1 1 0 1 1 1 0 YicC-like family, N-terminal region | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:107532-107819 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~107532-107819 BSP_II PF05432.6 g34858.t1 - 0.0022 17.3 5.1 0.0026 17 3.5 1.1 1 0 0 1 1 1 1 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1163_contigs=2, transcript_loc=scaffold1163_contigs=2:346-759 Augustus predicted protein sequence Tomato scaffold1163_contigs=2~346-759 Fimbrial_CS1 PF04449.7 g41994.t1 - 0.0015 18.6 0.9 0.0023 17.9 0.3 1.5 2 0 0 2 2 2 1 CS1 type fimbrial major subunit | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:115294-115749 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~115294-115749 TGF_beta_GS PF08515.7 g83971.t1 - 0.31 10.4 1.8 0.55 9.6 1.3 1.4 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:1-1045 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~1-1045 DUF3662 PF12401.3 g37236.t1 - 0.0049 17 0 0.0066 16.6 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2662) | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:85345-85575 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~85345-85575 DUF2216 PF10226.4 g44431.t1 - 0.024 14.1 0.2 0.03 13.8 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved proteins (DUF2216) | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:180856-181248 Augustus predicted protein sequence Tomato scaffold1429_contigs=14~180856-181248 ELFV_dehydrog_N PF02812.13 g62318.t1 - 0.11 12 0 0.17 11.4 0 1.3 1 0 0 1 1 1 0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:22966-23304 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~22966-23304 zf-CCHC PF00098.18 g19949.t1 - 0.031 14.1 3.7 0.058 13.3 2.6 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold764_contigs=3, transcript_loc=scaffold764_contigs=3:15228-15899 Augustus predicted protein sequence Tomato scaffold764_contigs=3~15228-15899 ATHILA PF03078.10 g18813.t1 - 0.0000079 24.7 0.7 0.00001 24.3 0.5 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:587067-589476 Augustus predicted protein sequence Tomato scaffold731_contigs=13~587067-589476 DUF2576 PF10845.3 g58878.t1 - 0.0076 15.3 4.1 12 5.1 0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF2576) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:59386-60519 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~59386-60519 DUF2408 PF10303.4 g35920.t1 - 0.0019 18.2 1.4 0.0034 17.4 1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:105415-107240 Augustus predicted protein sequence Tomato scaffold1185_contigs=5~105415-107240 CCDC144C PF14915.1 g30570.t1 - 0.052 12.4 2.8 0.061 12.2 1.9 1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:176898-177134 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~176898-177134 PBP1_TM PF14812.1 g87722.t1 - 0.25 11.6 1.4 0.29 11.4 0.9 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold3781_contigs=1, transcript_loc=scaffold3781_contigs=1:1-259 Augustus predicted protein sequence Tomato scaffold3781_contigs=1~1-259 Peptidase_M9 PF01752.12 g31051.t1 - 0.032 13.1 0.2 2.3 7 0 2.1 2 0 0 2 2 2 0 Collagenase | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:26129-38062 Augustus predicted protein sequence Tomato scaffold1054_contigs=13~26129-38062 DUF1556 PF07590.6 g80052.t1 - 0.014 15.5 3.2 0.018 15.2 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1556) | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:69173-69902 Augustus predicted protein sequence Tomato scaffold2706_contigs=4~69173-69902 DUF1878 PF08963.5 g32158.t1 - 0.023 14.9 3.7 0.036 14.2 1.5 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1878) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:614237-615617 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~614237-615617 Pro-kuma_activ PF09286.6 g21486.t1 - 0.12 12.4 0.1 0.16 12 0.1 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:48022-48297 Augustus predicted protein sequence Tomato scaffold800_contigs=2~48022-48297 DUF4170 PF13773.1 g18099.t1 - 0.024 14.4 0 0.045 13.6 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:421817-422311 Augustus predicted protein sequence Tomato scaffold720_contigs=9~421817-422311 Oxidored_q4 PF00507.14 g43332.t1 - 0.032 14 0.3 0.08 12.7 0.1 1.8 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:63900-65755 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~63900-65755 Pro-kuma_activ PF09286.6 g52942.t1 - 0.028 14.4 0.4 0.042 13.9 0.2 1.4 1 1 0 1 1 1 0 Pro-kumamolisin, activation domain | Ref_seq=scaffold1666_contigs=3, transcript_loc=scaffold1666_contigs=3:32100-32405 Augustus predicted protein sequence Tomato scaffold1666_contigs=3~32100-32405 Apolipoprotein PF01442.13 g37782.t1 - 0.0014 18.2 8.1 0.0014 18.2 5.6 2.3 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:308688-309981 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~308688-309981 ATHILA PF03078.10 g64162.t1 - 0.0015 17.2 0 0.0016 17.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:322682-322945 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~322682-322945 DUF4240 PF14024.1 g62697.t1 - 0.015 15.1 0.9 0.023 14.5 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4240) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:413666-414137 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~413666-414137 UBN2 PF14223.1 g65679.t1 - 0.071 12.8 1.4 2.9 7.7 0.1 2.5 1 1 2 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:37912-38373 Augustus predicted protein sequence Tomato scaffold2137_contigs=9~37912-38373 HdeA PF06411.6 g52523.t1 - 0.055 13.4 0.7 0.09 12.7 0.5 1.3 1 0 0 1 1 1 0 HdeA/HdeB family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:298183-303991 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~298183-303991 eIF-4B PF06273.6 g59697.t1 - 0.034 12.8 1.4 0.042 12.6 1 1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:44513-44821 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~44513-44821 DUF4611 PF15387.1 g79757.t1 - 0.031 14.4 0 0.054 13.6 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:516520-518626 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~516520-518626 FAP PF07174.6 g68718.t1 - 2.9 7.1 10.2 3.1 7 7.1 1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:86906-87208 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~86906-87208 Atg14 PF10186.4 g46172.t1 - 0.0042 16 7.4 0.0044 15.9 5.1 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:324545-325270 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~324545-325270 Rep_fac-A_C PF08646.5 g34241.t1 - 0.000000074 32.2 0.1 0.000000091 31.9 0.1 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:209251-211414 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~209251-211414 DUF1682 PF07946.9 g64841.t1 - 0.0009 18.1 0.5 0.0011 17.9 0.3 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:105948-106340 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~105948-106340 HALZ PF02183.13 g64509.t1 - 0.0033 17 0.5 0.0033 17 0.3 2.9 2 1 1 3 3 3 1 Homeobox associated leucine zipper | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:154370-154822 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~154370-154822 DUF2115 PF09888.4 g37354.t1 - 0.11 12.6 0 0.17 11.9 0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:181864-186057 Augustus predicted protein sequence Tomato scaffold1217_contigs=8~181864-186057 DUF4219 PF13961.1 g28178.t1 - 0.000093 21.7 0.4 0.00014 21.1 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:226815-227425 Augustus predicted protein sequence Tomato scaffold992_contigs=3~226815-227425 Herpes_alk_exo PF01771.12 g42541.t1 - 0.1 11 0 0.13 10.7 0 1.1 1 0 0 1 1 1 0 Herpesvirus alkaline exonuclease | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:144236-146561 Augustus predicted protein sequence Tomato scaffold1361_contigs=6~144236-146561 DNA_pol_lambd_f PF10391.4 g45547.t1 - 0.00056 19.3 0.5 1.1 8.8 0 2.3 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:20798-21414 Augustus predicted protein sequence Tomato scaffold1450_contigs=4~20798-21414 DUF2215 PF10225.4 g2351.t1 - 0.0091 15.4 0.2 0.012 15 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:20541-21266 Augustus predicted protein sequence Tomato scaffold235_contigs=2~20541-21266 Pinin_SDK_N PF04697.8 g33784.t1 - 0.11 12.5 2.1 0.13 12.2 1.5 1.1 1 0 0 1 1 1 0 pinin/SDK conserved region | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:368940-369155 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~368940-369155 HALZ PF02183.13 g74285.t1 - 0.0058 16.3 4.1 0.0096 15.6 0.4 2.8 1 1 1 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold2528_contigs=2, transcript_loc=scaffold2528_contigs=2:8329-9000 Augustus predicted protein sequence Tomato scaffold2528_contigs=2~8329-9000 AgrD PF05931.6 g56022.t1 - 0.0045 16.5 0 0.07 12.7 0 2.3 2 0 0 2 2 2 1 Staphylococcal AgrD protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:356275-356745 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~356275-356745 FAR1 PF03101.10 g21513.t1 - 0.000000031 34 0.6 0.000000063 33 0.4 1.5 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:130806-135979 Augustus predicted protein sequence Tomato scaffold800_contigs=2~130806-135979 NAM-associated PF14303.1 g4751.t1 - 0.000027 24.5 0.4 0.000044 23.8 0.3 1.3 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:80452-81111 Augustus predicted protein sequence Tomato scaffold307_contigs=2~80452-81111 ATHILA PF03078.10 g55752.t1 - 0.00000014 30.4 0 0.00000017 30.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:94158-94418 Augustus predicted protein sequence Tomato scaffold1765_contigs=2~94158-94418 CorA PF01544.13 g37389.t1 - 0.16 11 0 0.19 10.7 0 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:36186-39905 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~36186-39905 Imm37 PF15598.1 g10806.t1 - 0.077 12.8 0.2 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Immunity protein 37 | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:162382-163108 Augustus predicted protein sequence Tomato scaffold507_contigs=4~162382-163108 IFP_35_N PF07334.8 g19841.t1 - 0.04 13.8 2 0.14 12.1 1.4 2 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:46454-47077 Augustus predicted protein sequence Tomato scaffold760_contigs=13~46454-47077 Nop14 PF04147.7 g7597.t1 - 0.091 10.6 19.3 0.15 9.9 13.4 1.3 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:312650-313807 Augustus predicted protein sequence Tomato scaffold404_contigs=9~312650-313807 Plant_tran PF04827.9 g30925.t1 - 0.00031 20.1 2.2 0.029 13.7 0.1 2.2 1 1 1 2 2 2 2 Plant transposon protein | Ref_seq=scaffold1051_contigs=2, transcript_loc=scaffold1051_contigs=2:24526-26202 Augustus predicted protein sequence Tomato scaffold1051_contigs=2~24526-26202 Spo0A_C PF08769.6 g48616.t1 - 0.11 12.3 0.4 0.38 10.6 0 1.9 1 1 1 2 2 2 0 Sporulation initiation factor Spo0A C terminal | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:494265-496641 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~494265-496641 Dala_Dala_lig_N PF01820.16 g5372.t1 - 0.027 14.7 1.8 0.042 14.1 0.2 1.9 2 0 0 2 2 2 0 D-ala D-ala ligase N-terminus | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:188027-189946 Augustus predicted protein sequence Tomato scaffold325_contigs=5~188027-189946 Peptidase_S46 PF10459.4 g48040.t1 - 0.026 12.9 0.5 0.03 12.7 0.3 1.1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:459804-461030 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~459804-461030 zf-CCHC PF00098.18 g50047.t1 - 0.0000032 26.7 2.7 0.0000079 25.5 1.8 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:15081-15579 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~15081-15579 DUF4041 PF13250.1 g36662.t1 - 0.021 14.3 0.1 0.042 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4041) | Ref_seq=scaffold1206_contigs=3, transcript_loc=scaffold1206_contigs=3:46697-47062 Augustus predicted protein sequence Tomato scaffold1206_contigs=3~46697-47062 Drf_FH1 PF06346.7 g7414.t1 - 0.0081 15.6 0 0.0097 15.4 0 1.1 1 0 0 1 1 1 1 Formin Homology Region 1 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:270335-270655 Augustus predicted protein sequence Tomato scaffold395_contigs=7~270335-270655 K_channel_TID PF07941.6 g577.t1 - 2.8 8.2 9.6 6 7.1 6.7 1.8 1 1 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain | Ref_seq=scaffold65_contigs=1, transcript_loc=scaffold65_contigs=1:28358-28603 Augustus predicted protein sequence Tomato scaffold65_contigs=1~28358-28603 DUF4611 PF15387.1 g57971.t1 - 0.039 14 0.2 0.053 13.6 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:171604-171840 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~171604-171840 CAP_N PF01213.14 g69926.t1 - 0.099 11.9 2.8 0.15 11.3 1.9 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:16680-17294 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~16680-17294 Plug PF07715.10 g57688.t1 - 0.12 12.6 0.3 0.28 11.5 0.2 1.5 1 1 0 1 1 1 0 TonB-dependent Receptor Plug Domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:296476-297111 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~296476-297111 CRT10 PF08728.5 g58308.t1 - 0.55 8.1 4.6 0.66 7.8 3.2 1 1 0 0 1 1 1 0 CRT10 | Ref_seq=scaffold1852_contigs=2, transcript_loc=scaffold1852_contigs=2:73602-73976 Augustus predicted protein sequence Tomato scaffold1852_contigs=2~73602-73976 Peptidase_A4 PF01828.12 g75386.t1 - 0.21 10.6 6.5 12 4.9 0.5 3.1 2 1 1 3 3 3 0 Peptidase A4 family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:217763-219528 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~217763-219528 TFIIH_BTF_p62_N PF08567.6 g37091.t1 - 0.033 13.8 0.1 3.7 7.2 0 2.3 2 0 0 2 2 2 0 TFIIH p62 subunit, N-terminal domain | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:228570-229334 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~228570-229334 YfzA PF14118.1 g1213.t1 - 0.11 12.6 0.1 0.21 11.7 0.1 1.4 1 0 0 1 1 1 0 YfzA-like protein | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:34058-36214 Augustus predicted protein sequence Tomato scaffold194_contigs=2~34058-36214 BC10 PF06726.7 g50820.t1 - 0.18 11.8 1.6 0.25 11.3 0.3 1.9 2 0 0 2 2 2 0 Bladder cancer-related protein BC10 | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:168969-170358 Augustus predicted protein sequence Tomato scaffold1570_contigs=4~168969-170358 zf-BED PF02892.10 g212.t1 - 0.000029 23.7 0.3 0.000057 22.7 0.2 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold9_contigs=2, transcript_loc=scaffold9_contigs=2:12455-17121 Augustus predicted protein sequence Tomato scaffold9_contigs=2~12455-17121 PMD PF10536.4 g26905.t1 - 0.0016 17.5 0.4 0.0046 15.9 0.1 1.8 1 1 1 2 2 2 1 Plant mobile domain | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:409290-411833 Augustus predicted protein sequence Tomato scaffold961_contigs=8~409290-411833 PP2 PF14299.1 g2257.t1 - 0.000037 23.1 0 0.000044 22.9 0 1.2 1 0 0 1 1 1 1 Phloem protein 2 | Ref_seq=scaffold231_contigs=3, transcript_loc=scaffold231_contigs=3:85110-85436 Augustus predicted protein sequence Tomato scaffold231_contigs=3~85110-85436 KAR PF15222.1 g60807.t1 - 0.081 13 0 0.15 12.2 0 1.4 1 0 0 1 1 1 0 Kidney androgen-regulated | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:428469-428744 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~428469-428744 DUF1682 PF07946.9 g79524.t1 - 1.3 7.7 8.5 1.7 7.4 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:174428-175126 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~174428-175126 Sbi-IV PF11621.3 g58143.t1 - 0.12 12.5 0.1 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 C3 binding domain 4 of IgG-bind protein SBI | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:273-671 Augustus predicted protein sequence Tomato scaffold1848_contigs=19~273-671 APG6 PF04111.7 g38608.t1 - 0.61 9 9.6 0.8 8.6 6.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:48477-49949 Augustus predicted protein sequence Tomato scaffold1248_contigs=3~48477-49949 Chordopox_A13L PF05961.6 g84023.t1 - 0.13 12.2 0.4 0.2 11.6 0.3 1.2 1 0 0 1 1 1 0 Chordopoxvirus A13L protein | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:149715-150289 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~149715-150289 ECH_C PF13766.1 g50787.t1 - 0.028 14.5 0.4 0.055 13.6 0.3 1.4 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:67324-75014 Augustus predicted protein sequence Tomato scaffold1570_contigs=4~67324-75014 DUF1985 PF09331.6 g5143.t1 - 0.04 13.7 0 0.063 13 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:487622-488875 Augustus predicted protein sequence Tomato scaffold315_contigs=11~487622-488875 DBD_Tnp_Mut PF03108.10 g87184.t1 - 0.00089 18.7 1.2 0.0016 17.9 0.8 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2952_contigs=1, transcript_loc=scaffold2952_contigs=1:6689-7015 Augustus predicted protein sequence Tomato scaffold2952_contigs=1~6689-7015 Phasin PF05597.6 g45445.t1 - 0.037 13.7 0.3 0.18 11.5 0 2 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:277385-283807 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~277385-283807 DIT1_PvcA PF05141.7 g32952.t1 - 0.046 13 0.6 0.047 13 0.4 1.1 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:513904-514266 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~513904-514266 MHCassoc_trimer PF08831.5 g15002.t1 - 0.03 14.1 0.8 0.053 13.3 0.5 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:25865-26266 Augustus predicted protein sequence Tomato scaffold616_contigs=8~25865-26266 Sgf11 PF08209.6 g7174.t1 - 0.11 11.8 1.7 0.18 11.1 1.2 1.4 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:324257-324490 Augustus predicted protein sequence Tomato scaffold387_contigs=7~324257-324490 Chromo PF00385.19 g648.t1 - 0.006 16.2 0.7 0.006 16.2 0.5 1.7 2 0 0 2 2 2 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold88_contigs=5, transcript_loc=scaffold88_contigs=5:1-311 Augustus predicted protein sequence Tomato scaffold88_contigs=5~1-311 DUF2098 PF09871.4 g51016.t1 - 0.053 13.4 0.6 0.083 12.8 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2098) | Ref_seq=scaffold1604_contigs=5, transcript_loc=scaffold1604_contigs=5:60339-64562 Augustus predicted protein sequence Tomato scaffold1604_contigs=5~60339-64562 Retrotrans_gag PF03732.12 g57326.t1 - 0.013 15.6 1.5 0.037 14.1 1 1.6 1 1 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:197417-200642 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~197417-200642 Motilin_assoc PF04643.7 g11532.t1 - 0.033 13.6 0 0.041 13.3 0 1.2 1 0 0 1 1 1 0 Motilin/ghrelin-associated peptide | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:322178-322396 Augustus predicted protein sequence Tomato scaffold525_contigs=12~322178-322396 zf-CCHC_4 PF14392.1 g64904.t1 - 0.00033 20.2 0.1 0.00058 19.4 0.1 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:56060-56341 Augustus predicted protein sequence Tomato scaffold2100_contigs=9~56060-56341 NYD-SP28_assoc PF14775.1 g64907.t1 - 0.016 14.9 0 0.036 13.7 0 1.5 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:62859-63591 Augustus predicted protein sequence Tomato scaffold2100_contigs=9~62859-63591 Neurochondrin PF05536.6 g47415.t1 - 0.038 12.3 0 1 7.5 0 2.1 2 0 0 2 2 2 0 Neurochondrin | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:440596-447885 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~440596-447885 ARHGEF5_35 PF15441.1 g54077.t1 - 0.13 11 0.3 0.16 10.7 0.2 1 1 0 0 1 1 1 0 Rho guanine nucleotide exchange factor 5/35 | Ref_seq=scaffold1714_contigs=1, transcript_loc=scaffold1714_contigs=1:13583-13927 Augustus predicted protein sequence Tomato scaffold1714_contigs=1~13583-13927 UPF0547 PF10571.4 g25453.t1 - 0.11 12.1 0 0.18 11.5 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:304055-307551 Augustus predicted protein sequence Tomato scaffold928_contigs=4~304055-307551 RRF PF01765.14 g45153.t1 - 0.0012 18.3 0.2 0.0018 17.7 0 1.3 1 1 0 1 1 1 1 Ribosome recycling factor | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:182366-182701 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~182366-182701 Acetyltransf_13 PF13880.1 g51614.t1 - 0.11 12.2 0 6.3 6.6 0 2.1 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:59723-62847 Augustus predicted protein sequence Tomato scaffold1619_contigs=7~59723-62847 AKNA PF12443.3 g13562.t1 - 0.095 12.7 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 AT-hook-containing transcription factor | Ref_seq=scaffold577_contigs=2, transcript_loc=scaffold577_contigs=2:67738-74297 Augustus predicted protein sequence Tomato scaffold577_contigs=2~67738-74297 PBP1_TM PF14812.1 g57288.t1 - 0.006 16.8 3.2 0.0093 16.2 2.2 1.2 1 0 0 1 1 1 1 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:68431-68852 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~68431-68852 Gag_p12 PF01141.13 g65702.t1 - 0.029 14.4 0.3 0.055 13.6 0.1 1.5 1 1 1 2 2 2 0 Gag polyprotein, inner coat protein p12 | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:154732-155034 Augustus predicted protein sequence Tomato scaffold2137_contigs=9~154732-155034 Metallophos_C PF14008.1 g70424.t1 - 0.096 12.7 0.2 0.75 9.9 0 2.4 3 0 0 3 3 3 0 Iron/zinc purple acid phosphatase-like protein C | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:240053-242066 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~240053-242066 DHFR_1 PF00186.14 g5952.t1 - 0.038 13.5 0 0.053 13 0 1.1 1 0 0 1 1 1 0 Dihydrofolate reductase | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:247041-248165 Augustus predicted protein sequence Tomato scaffold344_contigs=14~247041-248165 DUF2457 PF10446.4 g18942.t1 - 0.02 13.6 7 0.019 13.7 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:123363-123698 Augustus predicted protein sequence Tomato scaffold738_contigs=9~123363-123698 ATHILA PF03078.10 g68218.t1 - 0.0017 17 0 0.0017 17 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:179617-179925 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~179617-179925 DUF3563 PF12086.3 g40204.t1 - 0.031 14 0 0.078 12.7 0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3563) | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:60930-61589 Augustus predicted protein sequence Tomato scaffold1294_contigs=7~60930-61589 Gly-rich_Ago1 PF12764.2 g25985.t1 - 0.57 10.8 2.3 0.67 10.6 1.6 1.3 1 1 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:158634-158870 Augustus predicted protein sequence Tomato scaffold941_contigs=6~158634-158870 Phage_F PF02305.12 g33456.t1 - 0.045 12.2 0 0.051 12.1 0 1.1 1 0 0 1 1 1 0 Capsid protein (F protein) | Ref_seq=scaffold1130_contigs=3, transcript_loc=scaffold1130_contigs=3:25052-25789 Augustus predicted protein sequence Tomato scaffold1130_contigs=3~25052-25789 ATHILA PF03078.10 g19619.t1 - 5.2E-012 45 0 0.0000026 26.3 0 2.2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:208235-212963 Augustus predicted protein sequence Tomato scaffold756_contigs=8~208235-212963 Trypan_PARP PF05887.6 g50867.t1 - 1.7 8.4 18.5 2.8 7.7 12.8 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:69589-69993 Augustus predicted protein sequence Tomato scaffold1576_contigs=4~69589-69993 SPARC_Ca_bdg PF10591.4 g30375.t1 - 0.033 14.1 0 0.035 14.1 0 1.2 1 0 0 1 1 1 0 Secreted protein acidic and rich in cysteine Ca binding region | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:245504-246128 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~245504-246128 Minor_capsid_3 PF12691.2 g87552.t1 - 0.00012 21.7 0 1.1 8.9 0 2.8 1 1 2 3 3 3 2 Minor capsid protein from bacteriophage | Ref_seq=scaffold3296_contigs=1, transcript_loc=scaffold3296_contigs=1:1-3053 Augustus predicted protein sequence Tomato scaffold3296_contigs=1~1-3053 Hpt PF01627.18 g53011.t1 - 0.012 15.6 0 0.019 14.9 0 1.5 1 1 0 1 1 1 0 Hpt domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:71118-71450 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~71118-71450 Avl9 PF09794.4 g25759.t1 - 0.088 11.2 0 0.088 11.2 0 1.1 1 0 0 1 1 1 0 Transport protein Avl9 | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:176883-177140 Augustus predicted protein sequence Tomato scaffold931_contigs=12~176883-177140 VBS PF08913.5 g2989.t1 - 0.0045 17.2 0.2 0.0059 16.8 0.1 1.3 1 1 0 1 1 1 1 Vinculin Binding Site | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:279662-280116 Augustus predicted protein sequence Tomato scaffold257_contigs=2~279662-280116 DUF349 PF03993.7 g14517.t1 - 0.14 12.3 0 0.19 11.9 0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:54230-54784 Augustus predicted protein sequence Tomato scaffold595_contigs=2~54230-54784 NESP55 PF06390.7 g53940.t1 - 0.044 13.1 2.5 0.075 12.4 1.7 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:27652-33365 Augustus predicted protein sequence Tomato scaffold1709_contigs=7~27652-33365 AA_permease PF00324.16 g78211.t1 - 0.0087 14.4 0.1 0.0096 14.2 0 1.3 1 1 0 1 1 1 1 Amino acid permease | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:543888-544193 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~543888-544193 DUF2968 PF11180.3 g71630.t1 - 0.026 13.9 3.1 0.042 13.2 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:99320-104792 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~99320-104792 Transglut_i_TM PF14400.1 g67501.t1 - 0.068 12.6 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:88686-91776 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~88686-91776 Ribosomal_S28e PF01200.13 g75531.t1 - 0.0041 16.8 0.9 0.62 9.8 0.1 2.3 2 0 0 2 2 2 2 Ribosomal protein S28e | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:68399-69529 Augustus predicted protein sequence Tomato scaffold2600_contigs=18~68399-69529 RRN3 PF05327.6 g2263.t1 - 0.35 8.9 2.7 5.2 5 0.1 2 1 1 1 2 2 2 0 RNA polymerase I specific transcription initiation factor RRN3 | Ref_seq=scaffold232_contigs=4, transcript_loc=scaffold232_contigs=4:4849-5408 Augustus predicted protein sequence Tomato scaffold232_contigs=4~4849-5408 bcl-2I13 PF12201.3 g48414.t1 - 0.011 15.2 0.1 0.2 11.1 0 2 1 1 1 2 2 2 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:12353-12903 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~12353-12903 Tna_leader PF08053.6 g11050.t1 - 0.35 10.3 7.3 2.6 7.5 0 3.9 4 0 0 4 4 4 0 Tryptophanese operon leader peptide | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:83797-84231 Augustus predicted protein sequence Tomato scaffold512_contigs=2~83797-84231 MetRS-N PF09635.5 g865.t1 - 0.024 15 3 0.74 10.2 0.1 2 1 1 1 2 2 2 0 MetRS-N binding domain | Ref_seq=scaffold166_contigs=1, transcript_loc=scaffold166_contigs=1:1-807 Augustus predicted protein sequence Tomato scaffold166_contigs=1~1-807 Chromo PF00385.19 g66259.t1 - 0.000022 24 0.1 0.000046 23 0 1.5 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2157_contigs=5, transcript_loc=scaffold2157_contigs=5:5896-10983 Augustus predicted protein sequence Tomato scaffold2157_contigs=5~5896-10983 YdjO PF14169.1 g45896.t1 - 1.3 8.5 4 0.31 10.5 0.5 1.7 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:102083-102607 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~102083-102607 Linocin_M18 PF04454.7 g47886.t1 - 0.08 11.8 0 0.13 11.1 0 1.2 1 0 0 1 1 1 0 Encapsulating protein for peroxidase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:6153-7145 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~6153-7145 Chromo PF00385.19 g49828.t1 - 0.0037 16.8 2.3 0.0063 16.1 0.1 2.1 2 0 0 2 2 2 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:349681-349971 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~349681-349971 PEP-utilisers_N PF05524.8 g30988.t1 - 0.034 13.9 0 0.068 12.9 0 1.5 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:196166-197316 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~196166-197316 TT_ORF2 PF02957.10 g21092.t1 - 0.15 12.7 0.8 0.22 12.2 0.5 1.2 1 0 0 1 1 1 0 TT viral ORF2 | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:297398-297784 Augustus predicted protein sequence Tomato scaffold792_contigs=3~297398-297784 NST1 PF13945.1 g20936.t1 - 0.12 12.3 3.2 0.12 12.4 2.2 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold784_contigs=2, transcript_loc=scaffold784_contigs=2:59489-59692 Augustus predicted protein sequence Tomato scaffold784_contigs=2~59489-59692 CDRT4 PF15213.1 g80759.t1 - 0.063 13.3 0.8 0.099 12.7 0.2 1.6 2 0 0 2 2 2 0 CMT1A duplicated region transcript 4 protein | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:240007-241000 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~240007-241000 Lactococcin_972 PF09683.5 g38142.t1 - 0.12 12.7 1.1 0.2 12 0.7 1.4 1 0 0 1 1 1 0 Bacteriocin (Lactococcin_972) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:369323-371966 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~369323-371966 COX5A PF02284.11 g74626.t1 - 0.027 14.4 0.2 0.059 13.3 0.1 1.6 2 0 0 2 2 2 0 Cytochrome c oxidase subunit Va | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:208032-209439 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~208032-209439 zf-RVT PF13966.1 g30939.t1 - 0.0009 19.5 0.1 0.00097 19.4 0.1 1.2 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1051_contigs=2, transcript_loc=scaffold1051_contigs=2:137606-137899 Augustus predicted protein sequence Tomato scaffold1051_contigs=2~137606-137899 Bap31 PF05529.7 g45159.t1 - 0.098 12.1 5.2 0.11 11.9 3.6 1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:206132-206338 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~206132-206338 DUF466 PF04328.8 g18956.t1 - 0.00037 20.2 0.1 0.37 10.6 0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF466) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:195471-196902 Augustus predicted protein sequence Tomato scaffold738_contigs=9~195471-196902 Mito_fiss_reg PF05308.6 g85930.t1 - 0.34 10.2 4.3 0.42 9.9 3 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2828_contigs=1, transcript_loc=scaffold2828_contigs=1:52992-55193 Augustus predicted protein sequence Tomato scaffold2828_contigs=1~52992-55193 TMF_DNA_bd PF12329.3 g13881.t1 - 0.23 11.2 12.3 0.16 11.7 7.1 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:462649-464045 Augustus predicted protein sequence Tomato scaffold582_contigs=8~462649-464045 zf-CCHC PF00098.18 g51137.t1 - 0.014 15.3 1.2 0.034 14.1 0.8 1.7 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:25712-26308 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~25712-26308 Dimer_Tnp_hAT PF05699.9 g76612.t1 - 0.000000048 32.5 0.1 0.00000011 31.3 0 1.6 1 1 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:243572-249746 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~243572-249746 AAA_30 PF13604.1 g24322.t1 - 0.1 12.1 2.6 0.12 11.9 1.8 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:136859-137177 Augustus predicted protein sequence Tomato scaffold880_contigs=9~136859-137177 PLDc PF00614.17 g74639.t1 - 0.02 14.7 0.2 7.4 6.5 0 2.9 2 0 0 2 2 2 0 Phospholipase D Active site motif | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:234805-246300 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~234805-246300 ApbE PF02424.10 g85929.t1 - 0.025 13.8 0.4 0.036 13.3 0.3 1.2 1 0 0 1 1 1 0 ApbE family | Ref_seq=scaffold2828_contigs=1, transcript_loc=scaffold2828_contigs=1:52294-52806 Augustus predicted protein sequence Tomato scaffold2828_contigs=1~52294-52806 Mrr_cat PF04471.7 g68155.t1 - 0.095 12.5 0.2 0.66 9.7 0 1.8 1 1 1 2 2 2 0 Restriction endonuclease | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:193441-193704 Augustus predicted protein sequence Tomato scaffold2207_contigs=13~193441-193704 UBN2_3 PF14244.1 g69472.t1 - 0.067 12.7 0 0.069 12.7 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:84657-84896 Augustus predicted protein sequence Tomato scaffold2287_contigs=19~84657-84896 ATHILA PF03078.10 g5142.t1 - 0.005 15.4 0 0.0068 15 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:483021-487126 Augustus predicted protein sequence Tomato scaffold315_contigs=11~483021-487126 ATP-synt_8 PF00895.15 g18520.t1 - 0.044 13.9 5 2.8 8.2 0 2.3 2 0 0 2 2 2 0 ATP synthase protein 8 | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:196771-198034 Augustus predicted protein sequence Tomato scaffold725_contigs=8~196771-198034 DUF4201 PF13870.1 g28624.t1 - 0.0057 16.1 5.1 0.013 14.8 3.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:203510-203986 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~203510-203986 FNIP PF05725.7 g86160.t1 - 0.095 12.6 0.1 0.46 10.4 0 2 2 0 0 2 2 2 0 FNIP Repeat | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:29921-30522 Augustus predicted protein sequence Tomato scaffold2840_contigs=1~29921-30522 UPF0004 PF00919.15 g17105.t1 - 0.1 12.4 1 1.7 8.5 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:187726-190847 Augustus predicted protein sequence Tomato scaffold694_contigs=2~187726-190847 DUF4372 PF14294.1 g6619.t1 - 0.014 15.2 0.1 0.033 14 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4372) | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:234969-236007 Augustus predicted protein sequence Tomato scaffold379_contigs=8~234969-236007 VLPT PF07122.6 g49298.t1 - 0.06 13 1.1 4 7.1 0 2.9 3 0 0 3 3 3 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:41930-43022 Augustus predicted protein sequence Tomato scaffold1532_contigs=5~41930-43022 DUF3122 PF11320.3 g70021.t1 - 0.067 13.1 0 0.099 12.5 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:255268-255933 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~255268-255933 Jnk-SapK_ap_N PF09744.4 g48831.t1 - 0.0024 17.8 5.5 0.0026 17.7 3.8 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:18822-19160 Augustus predicted protein sequence Tomato scaffold1509_contigs=13~18822-19160 bZIP_1 PF00170.16 g70886.t1 - 0.017 15.1 5.5 0.035 14 3.8 1.5 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:458485-459294 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~458485-459294 UBN2_3 PF14244.1 g81374.t1 - 0.1 12.1 0 0.14 11.6 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:84832-85778 Augustus predicted protein sequence Tomato scaffold2727_contigs=1~84832-85778 RCR PF12273.3 g30412.t1 - 0.054 14 0.9 0.06 13.9 0.6 1.1 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:362114-362437 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~362114-362437 IMS PF00817.15 g70810.t1 - 0.062 13 0 0.064 13 0 1.2 1 0 0 1 1 1 0 impB/mucB/samB family | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:176608-176982 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~176608-176982 DUF4462 PF14692.1 g7688.t1 - 0.15 11.3 9.6 1.6 8 0 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4462) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:187177-187551 Augustus predicted protein sequence Tomato scaffold405_contigs=10~187177-187551 DUF761 PF05553.6 g1059.t1 - 0.1 11.9 0.3 0.16 11.3 0.2 1.2 1 0 0 1 1 1 0 Cotton fibre expressed protein | Ref_seq=scaffold187_contigs=1, transcript_loc=scaffold187_contigs=1:1511-2318 Augustus predicted protein sequence Tomato scaffold187_contigs=1~1511-2318 SpoV PF08183.6 g68905.t1 - 0.002 17.7 0.3 2.8 7.7 0 2.5 2 0 0 2 2 2 2 Stage V sporulation protein family | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:46676-51815 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~46676-51815 DUF2877 PF11392.3 g9942.t1 - 0.1 12.8 0.1 6.1 7.1 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) | Ref_seq=scaffold480_contigs=8, transcript_loc=scaffold480_contigs=8:77947-79461 Augustus predicted protein sequence Tomato scaffold480_contigs=8~77947-79461 DUF641 PF04859.7 g35983.t1 - 0.0001 22 2.3 0.00014 21.6 1.6 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:144793-145254 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~144793-145254 Ribosomal_L15e PF00827.12 g29102.t1 - 0.17 11.3 3.3 3.2 7.2 3 2 2 0 0 2 2 2 0 Ribosomal L15 | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:124-1257 Augustus predicted protein sequence Tomato scaffold1013_contigs=9~124-1257 DUF1682 PF07946.9 g47044.t1 - 0.0041 16 7 0.0041 16 4.8 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:248004-248297 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~248004-248297 OSTbeta PF15048.1 g17299.t1 - 0.024 14.7 0.7 0.031 14.3 0.5 1.1 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:69610-69939 Augustus predicted protein sequence Tomato scaffold703_contigs=10~69610-69939 DUF4071 PF13281.1 g73460.t1 - 0.018 13.8 0.1 0.023 13.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:30754-32490 Augustus predicted protein sequence Tomato scaffold2465_contigs=4~30754-32490 DUF4131 PF13567.1 g81544.t1 - 5.8 6.2 6.6 31 3.8 0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:47647-53213 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~47647-53213 Actino_peptide PF14408.1 g85828.t1 - 0.023 14.6 0 0.044 13.6 0 1.4 1 0 0 1 1 1 0 Ribosomally synthesized peptide in actinomycetes | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:33921-40418 Augustus predicted protein sequence Tomato scaffold2823_contigs=1~33921-40418 QLQ PF08880.6 g44556.t1 - 0.55 9.6 0.2 0.55 9.6 0.1 2.2 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:174499-174711 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~174499-174711 DUF4380 PF14315.1 g49104.t1 - 0.017 14.3 0.1 0.025 13.7 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:14430-15886 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~14430-15886 Peptidase_C3G PF12381.3 g31674.t1 - 0.1 11.8 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Tungro spherical virus-type peptidase | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:110951-111211 Augustus predicted protein sequence Tomato scaffold1083_contigs=11~110951-111211 DUF1189 PF06691.6 g51008.t1 - 0.00099 18.4 0.8 0.0013 18.1 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1189) | Ref_seq=scaffold1604_contigs=5, transcript_loc=scaffold1604_contigs=5:1461-1970 Augustus predicted protein sequence Tomato scaffold1604_contigs=5~1461-1970 Sec16_N PF12935.2 g56929.t1 - 0.074 12.9 1.1 0.16 11.8 0.3 1.8 1 1 1 2 2 2 0 Vesicle coat trafficking protein Sec16 N-terminus | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:6774-7280 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~6774-7280 UPF0004 PF00919.15 g81367.t1 - 0.09 12.6 0.5 0.38 10.6 0.1 2 1 1 1 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:61357-62139 Augustus predicted protein sequence Tomato scaffold2727_contigs=1~61357-62139 FHA PF00498.21 g13499.t1 - 0.039 14 0 0.047 13.8 0 1.2 1 0 0 1 1 1 0 FHA domain | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:111340-111579 Augustus predicted protein sequence Tomato scaffold576_contigs=15~111340-111579 APG6 PF04111.7 g38083.t1 - 0.057 12.4 3.6 0.077 12 2.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:164227-168202 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~164227-168202 DUF2892 PF11127.3 g24664.t1 - 0.16 11.7 2.5 0.25 11.2 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:40981-42670 Augustus predicted protein sequence Tomato scaffold893_contigs=2~40981-42670 DUF4540 PF15073.1 g20099.t1 - 0.028 14.9 0.1 0.034 14.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4540) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:294903-295226 Augustus predicted protein sequence Tomato scaffold767_contigs=5~294903-295226 Filament PF00038.16 g60843.t1 - 0.16 11.4 2.5 0.32 10.4 1.8 1.4 1 1 0 1 1 1 0 Intermediate filament protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:522758-523375 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~522758-523375 Ldh_1_C PF02866.13 g699.t1 - 0.089 12.5 0 0.13 11.9 0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:177409-178374 Augustus predicted protein sequence Tomato scaffold95_contigs=9~177409-178374 Snurportin1 PF11538.3 g48525.t1 - 0.68 9.7 2.6 18 5.1 0.1 2.6 3 0 0 3 3 3 0 Snurportin1 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:185828-186199 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~185828-186199 DUF3008 PF11450.3 g20582.t1 - 0.042 13.9 3 0.067 13.3 2.1 1.4 1 0 0 1 1 1 0 Protein of unknwon function (DUF3008) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1178434-1178643 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1178434-1178643 NESP55 PF06390.7 g59674.t1 - 0.65 9.3 6.3 1.1 8.6 4.3 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1931_contigs=8, transcript_loc=scaffold1931_contigs=8:12590-12964 Augustus predicted protein sequence Tomato scaffold1931_contigs=8~12590-12964 CCDC-167 PF15188.1 g84731.t1 - 0.011 15.7 2.7 0.011 15.7 1.9 1.7 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:67339-67955 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~67339-67955 DUF2186 PF09952.4 g69935.t1 - 0.0063 16.7 0 0.0072 16.5 0 1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2186) | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:45367-45603 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~45367-45603 DUF1342 PF07072.6 g10628.t1 - 0.033 13.8 3.2 0.032 13.8 1.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1342) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:58798-60923 Augustus predicted protein sequence Tomato scaffold503_contigs=7~58798-60923 MRAP PF15183.1 g83859.t1 - 0.14 11.7 0 0.38 10.4 0 1.6 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2111039-2111299 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~2111039-2111299 Jnk-SapK_ap_N PF09744.4 g77201.t1 - 0.22 11.5 2.3 0.27 11.2 1.6 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:40577-40879 Augustus predicted protein sequence Tomato scaffold2651_contigs=23~40577-40879 NT-C2 PF10358.4 g36129.t1 - 0.071 12.6 0.6 0.11 11.9 0.4 1.2 1 0 0 1 1 1 0 N-terminal C2 in EEIG1 and EHBP1 proteins | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:424488-429959 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~424488-429959 DUF4653 PF15546.1 g35718.t1 - 0.14 11.4 0.1 0.15 11.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4653) | Ref_seq=scaffold1182_contigs=8, transcript_loc=scaffold1182_contigs=8:373663-374004 Augustus predicted protein sequence Tomato scaffold1182_contigs=8~373663-374004 Gag_spuma PF03276.9 g56253.t1 - 0.082 11.2 0.6 0.091 11 0.4 1.1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:73198-73694 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~73198-73694 DBD_Tnp_Mut PF03108.10 g5773.t1 - 0.0017 17.8 0.1 0.0031 17 0.1 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:182967-184675 Augustus predicted protein sequence Tomato scaffold338_contigs=10~182967-184675 IGPS PF00218.16 g45663.t1 - 0.24 10.4 0.9 0.29 10.1 0.6 1.1 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:291909-292525 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~291909-292525 Gliadin PF13016.1 g57534.t1 - 0.011 15.8 0.1 0.014 15.5 0.1 1.3 1 0 0 1 1 1 0 Cys-rich Gliadin N-terminal | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:51027-51819 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~51027-51819 Acetyltransf_7 PF13508.1 g16599.t1 - 0.052 13.7 0 0.12 12.6 0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:236285-237854 Augustus predicted protein sequence Tomato scaffold674_contigs=5~236285-237854 Hemopexin PF00045.14 g15225.t1 - 0.093 12.4 0 0.23 11.1 0 1.6 1 0 0 1 1 1 0 Hemopexin | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:9082-14141 Augustus predicted protein sequence Tomato scaffold623_contigs=13~9082-14141 DUF2517 PF10725.4 g39120.t1 - 1 9 4.7 26 4.5 0.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2517) | Ref_seq=scaffold1265_contigs=3, transcript_loc=scaffold1265_contigs=3:51401-51904 Augustus predicted protein sequence Tomato scaffold1265_contigs=3~51401-51904 CaM-KIIN PF15170.1 g33876.t1 - 0.21 11.6 1.2 1.1 9.2 0.1 2.4 1 1 2 3 3 3 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:268856-269086 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~268856-269086 Ipi1_N PF12333.3 g31949.t1 - 0.8 9.7 6.2 2 8.4 0.2 2.8 1 1 2 3 3 3 0 Rix1 complex component involved in 60S ribosome maturation | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:50629-51994 Augustus predicted protein sequence Tomato scaffold1097_contigs=2~50629-51994 RVT_3 PF13456.1 g7471.t1 - 0.006 16.3 0 0.012 15.3 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold400_contigs=4, transcript_loc=scaffold400_contigs=4:65860-66720 Augustus predicted protein sequence Tomato scaffold400_contigs=4~65860-66720 Pox_E10 PF04805.7 g2700.t1 - 0.11 11.9 0 0.18 11.3 0 1.3 1 0 0 1 1 1 0 E10-like protein conserved region | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:124077-124943 Augustus predicted protein sequence Tomato scaffold249_contigs=5~124077-124943 DUF2531 PF10748.4 g2005.t1 - 0.0028 16.8 3.3 0.0039 16.4 2.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2531) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:55953-60145 Augustus predicted protein sequence Tomato scaffold223_contigs=4~55953-60145 UreE_N PF02814.10 g18689.t1 - 0.071 12.6 0 0.11 12 0 1.3 1 0 0 1 1 1 0 UreE urease accessory protein, N-terminal domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:189050-189418 Augustus predicted protein sequence Tomato scaffold731_contigs=13~189050-189418 B3 PF02362.16 g66243.t1 - 0.0047 16.5 0.2 0.008 15.7 0.1 1.5 1 1 0 1 1 1 1 B3 DNA binding domain | Ref_seq=scaffold2155_contigs=2, transcript_loc=scaffold2155_contigs=2:25726-27132 Augustus predicted protein sequence Tomato scaffold2155_contigs=2~25726-27132 HAMP PF00672.20 g85059.t1 - 0.14 12.3 0.1 0.18 11.9 0.1 1.2 1 0 0 1 1 1 0 HAMP domain | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:28379-28639 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~28379-28639 DUF4207 PF13904.1 g36338.t1 - 0.0061 15.9 11.4 0.0073 15.7 7.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4207) | Ref_seq=scaffold1192_contigs=4, transcript_loc=scaffold1192_contigs=4:81278-82052 Augustus predicted protein sequence Tomato scaffold1192_contigs=4~81278-82052 CAP_N PF01213.14 g37487.t1 - 0.25 10.6 4.4 0.31 10.2 3 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:421031-421672 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~421031-421672 Nop14 PF04147.7 g63812.t1 - 0.0027 15.7 13.5 0.003 15.5 9.3 1.2 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:255184-255876 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~255184-255876 bcl-2I13 PF12201.3 g3651.t1 - 0.073 12.5 0 0.093 12.2 0 1.3 1 1 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:115873-116273 Augustus predicted protein sequence Tomato scaffold279_contigs=4~115873-116273 NAM-associated PF14303.1 g58123.t1 - 0.0059 16.9 1.2 0.0075 16.5 0.8 1.3 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:94562-96145 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~94562-96145 zf-BED PF02892.10 g18832.t1 - 0.0047 16.6 0.3 0.025 14.3 0.1 2.2 2 0 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:668215-670212 Augustus predicted protein sequence Tomato scaffold731_contigs=13~668215-670212 RCC1 PF00415.13 g52016.t1 - 0.072 13.3 1 5.2 7.3 0.1 2.3 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:266841-268407 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~266841-268407 RDM PF11002.3 g29608.t1 - 0.039 13.6 0.1 0.091 12.4 0.1 1.5 1 0 0 1 1 1 0 RFPL defining motif (RDM) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:237490-239117 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~237490-239117 Rab3-GTPase_cat PF13890.1 g11670.t1 - 0.081 12.3 0.3 0.1 11.9 0.2 1.2 1 0 0 1 1 1 0 Rab3 GTPase-activating protein catalytic subunit | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:262122-262778 Augustus predicted protein sequence Tomato scaffold528_contigs=4~262122-262778 DUF3858 PF12970.2 g39558.t1 - 0.11 12.2 0 0.14 11.9 0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3858) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:254675-255025 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~254675-255025 DUF381 PF04038.7 g86034.t1 - 0.075 13 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF381) | Ref_seq=scaffold2833_contigs=1, transcript_loc=scaffold2833_contigs=1:30826-32468 Augustus predicted protein sequence Tomato scaffold2833_contigs=1~30826-32468 Serine_rich PF08824.5 g7122.t1 - 0.008 15.9 1 0.013 15.1 0.7 1.4 1 0 0 1 1 1 1 Serine rich protein interaction domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:181406-181981 Augustus predicted protein sequence Tomato scaffold387_contigs=7~181406-181981 Toxin_32 PF08120.6 g17116.t1 - 0.12 11.9 2.1 0.91 9.1 0.7 2.2 2 0 0 2 2 2 0 Tamulustoxin family | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:228013-229269 Augustus predicted protein sequence Tomato scaffold694_contigs=2~228013-229269 SlyX PF04102.7 g67295.t1 - 0.42 11 2.9 1.9 8.8 2 2.1 1 1 0 1 1 1 0 SlyX | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:87847-88260 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~87847-88260 zf-CCHC PF00098.18 g76885.t1 - 0.00028 20.6 0.8 0.00049 19.8 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:196820-197488 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~196820-197488 FH2 PF02181.18 g55287.t1 - 0.0039 16.1 0.6 0.0065 15.3 0.3 1.4 2 0 0 2 2 2 1 Formin Homology 2 Domain | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:649278-650132 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~649278-650132 PspA_IM30 PF04012.7 g71715.t1 - 0.0023 17.3 1.6 0.0027 17.1 1.1 1.1 1 0 0 1 1 1 1 PspA/IM30 family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:24889-25158 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~24889-25158 FCH PF00611.18 g26722.t1 - 0.082 13.1 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:101171-105457 Augustus predicted protein sequence Tomato scaffold958_contigs=5~101171-105457 MFS_1 PF07690.11 g57620.t1 - 0.037 12.7 1.8 0.039 12.6 1.2 1 1 0 0 1 1 1 0 Major Facilitator Superfamily | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:46807-47070 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~46807-47070 Fer2_2 PF01799.15 g7017.t1 - 0.11 12.3 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 [2Fe-2S] binding domain | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:206939-207250 Augustus predicted protein sequence Tomato scaffold386_contigs=10~206939-207250 Pox_A14 PF05767.7 g70765.t1 - 0.0097 15.8 0 0.012 15.5 0 1.1 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:56716-57000 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~56716-57000 RNA_pol_3_Rpc31 PF11705.3 g65224.t1 - 0.8 9.6 7.9 0.81 9.5 5.5 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:396715-396942 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~396715-396942 MA3 PF02847.12 g52522.t1 - 0.088 12.5 0 0.099 12.3 0 1.1 1 0 0 1 1 1 0 MA3 domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:297157-297414 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~297157-297414 Herpes_UL95 PF03038.9 g10520.t1 - 0.13 11 2.7 0.14 11 1.9 1 1 0 0 1 1 1 0 UL95 family | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:505912-506229 Augustus predicted protein sequence Tomato scaffold498_contigs=12~505912-506229 HTH_40 PF14493.1 g37689.t1 - 0.098 12.8 0.3 0.13 12.4 0.2 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:50657-53798 Augustus predicted protein sequence Tomato scaffold1233_contigs=6~50657-53798 CAF-1_p150 PF11600.3 g63805.t1 - 0.000016 24.3 20.6 0.000016 24.3 14.3 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:231223-231618 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~231223-231618 CENP-R PF06729.7 g24444.t1 - 0.11 12.1 4.6 0.09 12.4 2 1.7 1 1 1 2 2 2 0 Kinetochore component, CENP-R | Ref_seq=scaffold881_contigs=4, transcript_loc=scaffold881_contigs=4:3582-3968 Augustus predicted protein sequence Tomato scaffold881_contigs=4~3582-3968 Ribosomal_S16 PF00886.14 g39897.t1 - 0.079 12.6 0.1 0.6 9.8 0 2.3 2 1 0 2 2 2 0 Ribosomal protein S16 | Ref_seq=scaffold1280_contigs=6, transcript_loc=scaffold1280_contigs=6:88555-89276 Augustus predicted protein sequence Tomato scaffold1280_contigs=6~88555-89276 DUF2733 PF10813.3 g24396.t1 - 2.9 7.5 4.4 10 5.7 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2733) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:436872-437354 Augustus predicted protein sequence Tomato scaffold880_contigs=9~436872-437354 DUF2956 PF11169.3 g1338.t1 - 0.18 11.7 8.2 0.33 10.9 5.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) | Ref_seq=scaffold198_contigs=2, transcript_loc=scaffold198_contigs=2:29755-30809 Augustus predicted protein sequence Tomato scaffold198_contigs=2~29755-30809 DUF2215 PF10225.4 g51575.t1 - 0.0099 15.3 3.3 0.012 15 2.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1617_contigs=2, transcript_loc=scaffold1617_contigs=2:53687-54285 Augustus predicted protein sequence Tomato scaffold1617_contigs=2~53687-54285 CCDC155 PF14662.1 g35121.t1 - 0.00055 19.6 2.7 0.00075 19.1 1.8 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:302137-303082 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~302137-303082 DUF2786 PF10979.3 g24394.t1 - 0.33 10.7 4.8 0.55 10 3.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2786) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:433066-434744 Augustus predicted protein sequence Tomato scaffold880_contigs=9~433066-434744 Serglycin PF04360.7 g55265.t1 - 0.0032 17.1 0.9 0.0046 16.6 0.6 1.4 1 0 0 1 1 1 1 Serglycin | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:592489-595721 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~592489-595721 DUF2353 PF09789.4 g26712.t1 - 0.006 15.8 0.4 0.0076 15.5 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:56532-58221 Augustus predicted protein sequence Tomato scaffold958_contigs=5~56532-58221 HCV_NS5a_1b PF08301.8 g6552.t1 - 0.0061 16.8 0 0.0066 16.7 0 1.2 1 0 0 1 1 1 1 Hepatitis C virus non-structural 5a domain 1b | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:117513-117806 Augustus predicted protein sequence Tomato scaffold378_contigs=5~117513-117806 Rootletin PF15035.1 g57558.t1 - 0.0012 18.8 1.3 0.0016 18.4 0.7 1.3 1 1 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:136516-137964 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~136516-137964 TSC22 PF01166.13 g77777.t1 - 0.02 14.8 3.6 0.052 13.5 1.1 2.4 3 0 0 3 3 3 0 TSC-22/dip/bun family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:349567-350600 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~349567-350600 Sipho_Gp157 PF05565.6 g36080.t1 - 0.0016 18 0.3 0.0019 17.8 0.2 1.1 1 0 0 1 1 1 1 Siphovirus Gp157 | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:283325-283624 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~283325-283624 CHAD PF05235.9 g24087.t1 - 0.0034 17 0 0.0049 16.4 0 1.2 1 0 0 1 1 1 1 CHAD domain | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:68790-69749 Augustus predicted protein sequence Tomato scaffold876_contigs=13~68790-69749 zf-BED PF02892.10 g27634.t1 - 0.023 14.4 2.1 0.066 12.9 1.5 1.8 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:94548-95135 Augustus predicted protein sequence Tomato scaffold983_contigs=13~94548-95135 P21-Arc PF04062.9 g11436.t1 - 0.16 11.7 0 0.22 11.2 0 1.1 1 0 0 1 1 1 0 ARP2/3 complex ARPC3 (21 kDa) subunit | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:80581-81357 Augustus predicted protein sequence Tomato scaffold524_contigs=3~80581-81357 UBN2_3 PF14244.1 g85373.t1 - 0.0066 16 0.5 0.0088 15.6 0.3 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:5693-6549 Augustus predicted protein sequence Tomato scaffold2802_contigs=1~5693-6549 GSIII_N PF12437.3 g32941.t1 - 0.1 11.9 0.2 0.12 11.7 0.1 1.1 1 0 0 1 1 1 0 Glutamine synthetase type III N terminal | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:485809-486075 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~485809-486075 Axin_b-cat_bind PF08833.5 g42364.t1 - 1.9 8.2 6.4 0.32 10.7 0.4 2.3 2 0 0 2 2 2 0 Axin beta-catenin binding domain | Ref_seq=scaffold1355_contigs=6, transcript_loc=scaffold1355_contigs=6:14521-14913 Augustus predicted protein sequence Tomato scaffold1355_contigs=6~14521-14913 MGC-24 PF05283.6 g37751.t1 - 0.052 13.3 1.2 0.055 13.2 0.9 1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:197920-198222 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~197920-198222 BLVR PF06375.6 g54082.t1 - 0.056 13.2 6.8 0.087 12.6 4.7 1.3 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:18443-19150 Augustus predicted protein sequence Tomato scaffold1715_contigs=5~18443-19150 Prenyltrans PF00432.16 g74045.t1 - 0.13 11.8 2.9 0.27 10.8 2 1.4 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:287064-287381 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~287064-287381 TMF_DNA_bd PF12329.3 g66744.t1 - 0.71 9.7 4.7 2.2 8.1 2.9 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold2168_contigs=4, transcript_loc=scaffold2168_contigs=4:15405-16364 Augustus predicted protein sequence Tomato scaffold2168_contigs=4~15405-16364 BRCT PF00533.21 g49046.t1 - 0.017 15.2 0.1 0.55 10.4 0 2.2 1 1 1 2 2 2 0 BRCA1 C Terminus (BRCT) domain | Ref_seq=scaffold1521_contigs=7, transcript_loc=scaffold1521_contigs=7:40365-40727 Augustus predicted protein sequence Tomato scaffold1521_contigs=7~40365-40727 DUF681 PF05080.7 g17803.t1 - 0.017 15.5 0.4 0.024 15 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF681) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:287939-288659 Augustus predicted protein sequence Tomato scaffold714_contigs=9~287939-288659 BLVR PF06375.6 g10007.t1 - 0.055 13.2 5 0.056 13.2 3.4 1.2 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:145822-146223 Augustus predicted protein sequence Tomato scaffold481_contigs=9~145822-146223 FH2 PF02181.18 g22098.t1 - 0.062 12.1 0.1 0.094 11.5 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:37774-38535 Augustus predicted protein sequence Tomato scaffold819_contigs=1~37774-38535 Sugarporin_N PF11471.3 g42652.t1 - 0.029 14 1.7 0.035 13.7 0.7 1.6 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1368_contigs=16, transcript_loc=scaffold1368_contigs=16:69385-69648 Augustus predicted protein sequence Tomato scaffold1368_contigs=16~69385-69648 Tom37_C PF11801.3 g49750.t1 - 0.21 11.4 1.4 0.33 10.8 0.9 1.3 1 0 0 1 1 1 0 Tom37 C-terminal domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:122933-124478 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~122933-124478 UPF0547 PF10571.4 g82434.t1 - 0.027 14.1 0 0.042 13.5 0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:38409-38815 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~38409-38815 ketoacyl-synt PF00109.21 g39184.t1 - 0.084 12.3 0 0.093 12.1 0 1.2 1 0 0 1 1 1 0 Beta-ketoacyl synthase, N-terminal domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:228377-229821 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~228377-229821 ATHILA PF03078.10 g79465.t1 - 0.000000043 32.1 0 0.000000047 32 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:155037-155402 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~155037-155402 DUF466 PF04328.8 g46299.t1 - 0.0054 16.5 0 0.014 15.1 0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF466) | Ref_seq=scaffold1478_contigs=6, transcript_loc=scaffold1478_contigs=6:75833-76789 Augustus predicted protein sequence Tomato scaffold1478_contigs=6~75833-76789 UPF0561 PF10573.4 g9426.t1 - 8.3 6.2 14.9 10 5.9 10.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:251351-251593 Augustus predicted protein sequence Tomato scaffold455_contigs=9~251351-251593 DUF386 PF04074.7 g56693.t1 - 0.13 11.7 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF386) | Ref_seq=scaffold1813_contigs=6, transcript_loc=scaffold1813_contigs=6:199025-199360 Augustus predicted protein sequence Tomato scaffold1813_contigs=6~199025-199360 DUF167 PF02594.11 g68876.t1 - 0.053 13.4 0 0.73 9.8 0 2 2 0 0 2 2 2 0 Uncharacterised ACR, YggU family COG1872 | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:253827-254093 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~253827-254093 Claudin_2 PF13903.1 g15691.t1 - 0.026 14.2 1.2 0.041 13.5 0.8 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:60958-62720 Augustus predicted protein sequence Tomato scaffold640_contigs=3~60958-62720 DUF3275 PF11679.3 g80915.t1 - 0.12 12 5.3 0.19 11.3 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:280180-281437 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~280180-281437 DUF2443 PF10398.4 g58809.t1 - 0.11 12.3 1.1 0.82 9.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2443) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:340764-341180 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~340764-341180 Tap-RNA_bind PF09162.5 g4529.t1 - 0.051 13.1 0 0.097 12.2 0 1.4 1 0 0 1 1 1 0 Tap, RNA-binding | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:14933-21268 Augustus predicted protein sequence Tomato scaffold303_contigs=3~14933-21268 Vps55 PF04133.9 g46006.t1 - 0.05 13.3 1 0.064 13 0.4 1.4 2 0 0 2 2 2 0 Vacuolar protein sorting 55 | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:88645-88974 Augustus predicted protein sequence Tomato scaffold1472_contigs=11~88645-88974 WASH-7_C PF14746.1 g74538.t1 - 0.0013 18.3 0 0.045 13.3 0 2 1 1 1 2 2 2 2 WASH complex subunit 7, C-terminal | Ref_seq=scaffold2560_contigs=11, transcript_loc=scaffold2560_contigs=11:300-777 Augustus predicted protein sequence Tomato scaffold2560_contigs=11~300-777 SR-25 PF10500.4 g11058.t1 - 4.9 6.5 7.8 6.8 6 5.4 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:114633-115040 Augustus predicted protein sequence Tomato scaffold512_contigs=2~114633-115040 Sporozoite_P67 PF05642.6 g58138.t1 - 4.8 4.9 5.2 0.25 9.1 0.2 1.3 2 0 0 2 2 2 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1847_contigs=8, transcript_loc=scaffold1847_contigs=8:2621-5706 Augustus predicted protein sequence Tomato scaffold1847_contigs=8~2621-5706 Tropomyosin PF00261.15 g27630.t1 - 0.0055 15.8 1.1 0.0058 15.7 0.8 1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:70470-70676 Augustus predicted protein sequence Tomato scaffold983_contigs=13~70470-70676 PaaSYMP PF14738.1 g51889.t1 - 0.036 13.7 17.2 0.04 13.6 12 1.1 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:16167-16613 Augustus predicted protein sequence Tomato scaffold1626_contigs=2~16167-16613 DUF1510 PF07423.6 g7625.t1 - 0.013 14.8 4.5 0.018 14.4 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:387608-388048 Augustus predicted protein sequence Tomato scaffold404_contigs=9~387608-388048 DUF3300 PF11737.3 g20555.t1 - 0.068 12.4 0 0.078 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3300) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1106489-1106716 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1106489-1106716 Mak10 PF04112.8 g55627.t1 - 0.063 12.5 0 0.12 11.6 0 1.4 2 0 0 2 2 2 0 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:2291-4353 Augustus predicted protein sequence Tomato scaffold1759_contigs=3~2291-4353 DUF3429 PF11911.3 g82640.t1 - 0.04 13.8 0.1 0.061 13.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:336748-346106 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~336748-346106 DUF3673 PF12425.3 g82489.t1 - 0.13 12 1.4 0.2 11.4 1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3673) | Ref_seq=scaffold2744_contigs=5, transcript_loc=scaffold2744_contigs=5:85249-85482 Augustus predicted protein sequence Tomato scaffold2744_contigs=5~85249-85482 zf-CCHC PF00098.18 g16200.t1 - 0.0034 17.2 1.7 0.0053 16.6 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold659_contigs=1, transcript_loc=scaffold659_contigs=1:68709-69023 Augustus predicted protein sequence Tomato scaffold659_contigs=1~68709-69023 HAUS4 PF14735.1 g68995.t1 - 0.018 14.3 1.9 0.027 13.7 1.2 1.3 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:26996-27442 Augustus predicted protein sequence Tomato scaffold2245_contigs=4~26996-27442 SCA7 PF08313.7 g56644.t1 - 0.071 12.7 0.2 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 SCA7, zinc-binding domain | Ref_seq=scaffold1812_contigs=3, transcript_loc=scaffold1812_contigs=3:47165-47981 Augustus predicted protein sequence Tomato scaffold1812_contigs=3~47165-47981 Tox-HDC PF15656.1 g16794.t1 - 0.1 12.7 0.2 0.16 12.2 0.1 1.3 1 0 0 1 1 1 0 Toxin with a H, D/N and C signature | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:50016-50456 Augustus predicted protein sequence Tomato scaffold682_contigs=5~50016-50456 DUF4022 PF13214.1 g11448.t1 - 0.062 13.4 3 0.065 13.3 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4022) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:115816-116127 Augustus predicted protein sequence Tomato scaffold524_contigs=3~115816-116127 Shugoshin_N PF07558.6 g81443.t1 - 0.89 9.3 6.3 2.5 7.8 2.3 2.5 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:149811-150365 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~149811-150365 DUF2243 PF10002.4 g36695.t1 - 0.1 12.3 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2243) | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:211465-212379 Augustus predicted protein sequence Tomato scaffold1207_contigs=28~211465-212379 DUF2791 PF10923.3 g28946.t1 - 0.11 11 0 0.13 10.8 0 1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:892850-893143 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~892850-893143 UBN2_2 PF14227.1 g32526.t1 - 0.03 13.8 0.1 0.055 13 0 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1106_contigs=3, transcript_loc=scaffold1106_contigs=3:14439-16823 Augustus predicted protein sequence Tomato scaffold1106_contigs=3~14439-16823 Baculo_8kDa PF06096.6 g9137.t1 - 0.018 14.9 1.2 0.063 13.1 0.4 2 1 1 1 2 2 2 0 Baculoviridae 8.2 KDa protein | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:47451-47852 Augustus predicted protein sequence Tomato scaffold448_contigs=2~47451-47852 Med19 PF10278.4 g87256.t1 - 0.0016 18.1 7.6 0.0016 18.1 5.3 1.1 1 0 0 1 1 1 1 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold2976_contigs=1, transcript_loc=scaffold2976_contigs=1:465-1045 Augustus predicted protein sequence Tomato scaffold2976_contigs=1~465-1045 zf-TFIIB PF13453.1 g83510.t1 - 0.12 11.5 0.3 0.12 11.5 0.2 4.2 5 0 0 5 5 5 0 Transcription factor zinc-finger | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:754573-756392 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~754573-756392 Dicty_CAD PF05720.7 g56453.t1 - 0.0019 17.8 0 0.0031 17.1 0 1.3 1 0 0 1 1 1 1 Cell-cell adhesion domain | Ref_seq=scaffold1806_contigs=1, transcript_loc=scaffold1806_contigs=1:10699-11142 Augustus predicted protein sequence Tomato scaffold1806_contigs=1~10699-11142 NicO PF03824.11 g66682.t1 - 0.059 12.6 0.1 0.076 12.3 0 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:43716-44322 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~43716-44322 SPOB_a PF14689.1 g31493.t1 - 0.000073 22.2 0 0.47 10 0 2.3 2 0 0 2 2 2 2 Sensor_kinase_SpoOB-type, alpha-helical domain | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:22730-23444 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~22730-23444 ATHILA PF03078.10 g17062.t1 - 0.016 13.8 0.3 0.028 12.9 0.2 1.4 1 1 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:47192-47822 Augustus predicted protein sequence Tomato scaffold694_contigs=2~47192-47822 DUF718 PF05336.8 g72575.t1 - 0.12 12.1 1.1 2.1 8.1 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF718) | Ref_seq=scaffold2405_contigs=11, transcript_loc=scaffold2405_contigs=11:15335-21936 Augustus predicted protein sequence Tomato scaffold2405_contigs=11~15335-21936 Trypan_PARP PF05887.6 g78169.t1 - 0.13 12 3.6 0.22 11.3 2.5 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:358151-360923 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~358151-360923 PKI PF02827.11 g31794.t1 - 0.06 13.4 0.7 0.06 13.4 0.5 2.1 2 0 0 2 2 2 0 cAMP-dependent protein kinase inhibitor | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:139604-140119 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~139604-140119 PT-VENN PF04829.8 g53456.t1 - 0.032 13.7 0.4 0.051 13.1 0.3 1.3 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif | Ref_seq=scaffold1691_contigs=8, transcript_loc=scaffold1691_contigs=8:27862-28125 Augustus predicted protein sequence Tomato scaffold1691_contigs=8~27862-28125 ATHILA PF03078.10 g13949.t1 - 0.047 12.2 0 0.06 11.9 0 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:6010-6378 Augustus predicted protein sequence Tomato scaffold583_contigs=2~6010-6378 TB2_DP1_HVA22 PF03134.14 g71864.t1 - 0.024 14.3 2.6 0.75 9.5 0.1 2.2 2 0 0 2 2 2 0 TB2/DP1, HVA22 family | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:100496-106110 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~100496-106110 Pox_A_type_inc PF04508.7 g26837.t1 - 0.24 11.2 7.6 2 8.4 0.3 3.5 3 1 0 3 3 3 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:156974-159815 Augustus predicted protein sequence Tomato scaffold961_contigs=8~156974-159815 Nbl1_Borealin_N PF10444.4 g66707.t1 - 0.016 14.5 0 0.034 13.5 0 1.5 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:119654-122763 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~119654-122763 Formyl_trans_N PF00551.14 g47638.t1 - 0.021 14.3 0 0.024 14.1 0 1.2 1 0 0 1 1 1 0 Formyl transferase | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:5937-6308 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~5937-6308 bZIP_2 PF07716.10 g13961.t1 - 0.29 10.9 0.1 0.29 10.9 0.1 1.8 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:71256-71615 Augustus predicted protein sequence Tomato scaffold583_contigs=2~71256-71615 N_NLPC_P60 PF12912.2 g10339.t1 - 0.085 12.9 0.2 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:294730-295089 Augustus predicted protein sequence Tomato scaffold494_contigs=9~294730-295089 Stm1_N PF09598.5 g9756.t1 - 1.5 9.5 3.9 2.4 8.9 2.7 1.3 1 0 0 1 1 1 0 Stm1 | Ref_seq=scaffold473_contigs=14, transcript_loc=scaffold473_contigs=14:314057-314428 Augustus predicted protein sequence Tomato scaffold473_contigs=14~314057-314428 DUF4654 PF15547.1 g43643.t1 - 0.02 15.2 0 0.024 14.9 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4654) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:225125-226108 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~225125-226108 HALZ PF02183.13 g11538.t1 - 0.00065 19.3 7 0.0007 19.2 2 2.4 1 1 1 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:352541-353381 Augustus predicted protein sequence Tomato scaffold525_contigs=12~352541-353381 Rep_trans PF02486.14 g71953.t1 - 0.037 13.5 2 0.049 13.1 1.4 1.2 1 0 0 1 1 1 0 Replication initiation factor | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:445035-445520 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~445035-445520 Chlam_OMP6 PF03504.8 g70715.t1 - 0.0054 16.9 0.3 1.4 9.2 0.1 2.7 2 0 0 2 2 2 2 Chlamydia cysteine-rich outer membrane protein 6 | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:85570-94679 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~85570-94679 SR-25 PF10500.4 g40719.t1 - 1.3 8.4 9.8 1.7 8 6.8 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:188059-188349 Augustus predicted protein sequence Tomato scaffold1308_contigs=16~188059-188349 CpXC PF14353.1 g4199.t1 - 0.017 15 0.1 0.045 13.7 0 1.6 2 0 0 2 2 2 0 CpXC protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:303340-304916 Augustus predicted protein sequence Tomato scaffold293_contigs=5~303340-304916 Red1 PF07964.6 g17757.t1 - 0.57 8.2 5.3 0.69 8 3.7 1.2 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:146110-147237 Augustus predicted protein sequence Tomato scaffold714_contigs=9~146110-147237 UPF0058 PF01893.11 g59902.t1 - 0.097 12.7 0 0.17 11.9 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0058 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:230613-231050 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~230613-231050 DUF4647 PF15504.1 g18516.t1 - 0.029 13.2 2.6 0.03 13.1 1.8 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4647) | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:182315-182714 Augustus predicted protein sequence Tomato scaffold725_contigs=8~182315-182714 EF-hand_like PF09279.6 g72942.t1 - 0.00078 19.4 0.1 0.001 19 0 1.2 1 0 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:984983-985273 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~984983-985273 DUF4172 PF13776.1 g81292.t1 - 0.18 11.8 1.8 0.47 10.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:246964-255687 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~246964-255687 UBN2_2 PF14227.1 g85048.t1 - 0.07 12.6 0 0.19 11.2 0 1.7 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:102234-106883 Augustus predicted protein sequence Tomato scaffold2788_contigs=1~102234-106883 NAD_synthase PF02540.12 g27421.t1 - 0.0048 15.8 0.3 0.0061 15.4 0.2 1.1 1 0 0 1 1 1 1 NAD synthase | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:37348-38427 Augustus predicted protein sequence Tomato scaffold979_contigs=3~37348-38427 FAM150 PF15129.1 g87311.t1 - 0.0067 16.2 0.7 0.43 10.4 0.1 2.3 2 0 0 2 2 2 2 FAM150 family | Ref_seq=scaffold2998_contigs=1, transcript_loc=scaffold2998_contigs=1:1978-2727 Augustus predicted protein sequence Tomato scaffold2998_contigs=1~1978-2727 CENP_C_N PF15622.1 g20236.t1 - 0.015 14.5 1.8 0.015 14.5 1.3 1.6 1 1 1 2 2 2 0 Kinetochore assembly subunit CENP-C N-terminal | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:388450-389118 Augustus predicted protein sequence Tomato scaffold768_contigs=4~388450-389118 DUF3316 PF11777.3 g10885.t1 - 0.041 13.6 0.2 0.045 13.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3316) | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:289703-289990 Augustus predicted protein sequence Tomato scaffold508_contigs=9~289703-289990 DUF2046 PF09755.4 g72184.t1 - 0.0033 16.3 10.4 0.0048 15.8 1.4 2.7 1 1 0 2 2 2 2 Uncharacterized conserved protein H4 (DUF2046) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:552523-554069 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~552523-554069 AAT PF03417.11 g81764.t1 - 0.026 13.9 1.7 0.035 13.5 1.2 1.1 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:575529-575939 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~575529-575939 zf-CCHC PF00098.18 g26529.t1 - 0.081 12.8 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold951_contigs=4, transcript_loc=scaffold951_contigs=4:29320-29814 Augustus predicted protein sequence Tomato scaffold951_contigs=4~29320-29814 RVT_3 PF13456.1 g46744.t1 - 0.0000033 26.7 0 0.0000039 26.5 0 1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1487_contigs=3, transcript_loc=scaffold1487_contigs=3:18537-18951 Augustus predicted protein sequence Tomato scaffold1487_contigs=3~18537-18951 HrpB7 PF09486.5 g49896.t1 - 0.025 14.5 0.4 0.031 14.2 0.3 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:552601-553050 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~552601-553050 Tropomyosin PF00261.15 g63134.t1 - 0.004 16.2 1.8 0.0052 15.8 1.3 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:284975-285565 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~284975-285565 Gly-rich_Ago1 PF12764.2 g65613.t1 - 2.4 8.8 6.1 0.65 10.6 1.8 1.7 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:123262-123666 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~123262-123666 NAM-associated PF14303.1 g42245.t1 - 0.01 16.1 4.4 0.014 15.6 3 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1351_contigs=1, transcript_loc=scaffold1351_contigs=1:15648-16046 Augustus predicted protein sequence Tomato scaffold1351_contigs=1~15648-16046 CAF-1_p150 PF11600.3 g77766.t1 - 0.007 15.7 40.5 0.007 15.7 28 1.8 2 0 0 2 2 2 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:309129-310474 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~309129-310474 RVP_2 PF08284.6 g43674.t1 - 0.0048 16.8 0 0.0061 16.4 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:310166-310432 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~310166-310432 FRG1 PF06229.7 g4096.t1 - 0.0081 15.6 6.2 0.01 15.3 4.3 1 1 0 0 1 1 1 1 FRG1-like family | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:37766-38182 Augustus predicted protein sequence Tomato scaffold291_contigs=11~37766-38182 YbfN PF13982.1 g61094.t1 - 0.00074 19.6 0.1 0.00098 19.2 0.1 1.1 1 0 0 1 1 1 1 YbfN-like lipoprotein | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:516436-516651 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~516436-516651 RVP_2 PF08284.6 g75549.t1 - 0.0000002 31 0.2 0.00000026 30.6 0.2 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:17152-20072 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~17152-20072 DUF2051 PF09738.4 g54605.t1 - 0.14 11.4 1 0.2 10.9 0.7 1.1 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:189687-190106 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~189687-190106 Cwf_Cwc_15 PF04889.7 g75481.t1 - 0.041 13.5 0.9 0.045 13.4 0.6 1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:117662-117868 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~117662-117868 Antigen_Bd37 PF11641.3 g25837.t1 - 0.03 13.6 0.1 0.03 13.6 0 1.2 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:352749-354857 Augustus predicted protein sequence Tomato scaffold933_contigs=12~352749-354857 SelB-wing_3 PF09107.6 g60025.t1 - 0.04 13.3 0 0.057 12.8 0 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix | Ref_seq=scaffold1938_contigs=9, transcript_loc=scaffold1938_contigs=9:344906-345136 Augustus predicted protein sequence Tomato scaffold1938_contigs=9~344906-345136 Sds3 PF08598.6 g17444.t1 - 0.026 14 1.5 0.034 13.6 0.9 1.3 1 1 0 1 1 1 0 Sds3-like | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:35927-36989 Augustus predicted protein sequence Tomato scaffold707_contigs=5~35927-36989 LURAP PF14854.1 g26435.t1 - 0.013 15.2 0.6 0.013 15.2 0.4 1.6 2 0 0 2 2 2 0 Leucine rich adaptor protein | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:39638-41041 Augustus predicted protein sequence Tomato scaffold949_contigs=2~39638-41041 DUF4040 PF13244.1 g69082.t1 - 0.00028 20.7 2.2 7.4 6.6 0 3.3 3 0 0 3 3 3 3 Domain of unknown function (DUF4040) | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:14435-18783 Augustus predicted protein sequence Tomato scaffold2253_contigs=17~14435-18783 DBD_Tnp_Mut PF03108.10 g76826.t1 - 5.1E-009 35.5 0.3 8.4E-009 34.8 0.2 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:4041-5237 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~4041-5237 PROL5-SMR PF15621.1 g73493.t1 - 0.25 11.7 5 0.29 11.5 3.5 1.1 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold2470_contigs=4, transcript_loc=scaffold2470_contigs=4:5315-5664 Augustus predicted protein sequence Tomato scaffold2470_contigs=4~5315-5664 DUF2411 PF10304.4 g2916.t1 - 0.37 10.3 1.5 0.44 10.1 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2411) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:103775-104169 Augustus predicted protein sequence Tomato scaffold257_contigs=2~103775-104169 UPF0542 PF15086.1 g67970.t1 - 0.0053 16.4 0 0.0082 15.8 0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family UPF0542 | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:151493-151750 Augustus predicted protein sequence Tomato scaffold2204_contigs=7~151493-151750 gag_pre-integrs PF13976.1 g31990.t1 - 0.021 14.4 0.2 0.054 13.1 0 2 2 0 0 2 2 2 0 GAG-pre-integrase domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:46807-48607 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~46807-48607 DUF3524 PF12038.3 g41998.t1 - 0.053 13 0.2 0.13 11.7 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3524) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:126230-129407 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~126230-129407 CHASE4 PF05228.8 g39376.t1 - 0.052 13.1 0 0.071 12.6 0 1.2 1 0 0 1 1 1 0 CHASE4 domain | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:196141-196812 Augustus predicted protein sequence Tomato scaffold1269_contigs=10~196141-196812 DUF1582 PF07621.6 g77024.t1 - 0.0063 16.4 0.1 6.6 6.8 0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF1582) | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:84134-86957 Augustus predicted protein sequence Tomato scaffold2644_contigs=21~84134-86957 COX2_TM PF02790.10 g32046.t1 - 1.7 8.6 7.4 0.27 11.1 1.4 2.4 2 2 1 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:208071-208622 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~208071-208622 DUF1676 PF07898.8 g77503.t1 - 0.051 13.8 0.1 0.057 13.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:206316-206516 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~206316-206516 UPF0547 PF10571.4 g73870.t1 - 0.095 12.4 0.4 0.32 10.7 0 2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:39205-40207 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~39205-40207 DUF2771 PF10969.3 g16164.t1 - 0.000023 23.6 0.2 3.8 6.7 0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF2771) | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:25044-27046 Augustus predicted protein sequence Tomato scaffold656_contigs=9~25044-27046 MRP-L46 PF11788.3 g52151.t1 - 0.066 13.8 2.9 0.076 13.6 2 1.1 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:217042-217266 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~217042-217266 CAF-1_p150 PF11600.3 g23449.t1 - 0.000032 23.4 19.6 0.000032 23.4 13.6 2.8 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:254984-256721 Augustus predicted protein sequence Tomato scaffold859_contigs=6~254984-256721 EspB PF05802.6 g50527.t1 - 0.027 13.4 1.4 0.03 13.2 0.9 1 1 0 0 1 1 1 0 Enterobacterial EspB protein | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:111844-112438 Augustus predicted protein sequence Tomato scaffold1566_contigs=4~111844-112438 TrkA_N PF02254.13 g83072.t1 - 0.13 12.2 0 0.15 12 0 1.1 1 0 0 1 1 1 0 TrkA-N domain | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:103431-103835 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~103431-103835 ProRS-C_1 PF09180.6 g17418.t1 - 0.085 12.7 0.3 0.14 12.1 0.2 1.5 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal | Ref_seq=scaffold706_contigs=4, transcript_loc=scaffold706_contigs=4:55651-56729 Augustus predicted protein sequence Tomato scaffold706_contigs=4~55651-56729 DUF2186 PF09952.4 g69936.t1 - 0.062 13.5 0 0.07 13.3 0 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2186) | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:46189-46425 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~46189-46425 Mmp37 PF09139.6 g7510.t1 - 0.051 12.5 0.1 0.057 12.4 0 1.1 1 0 0 1 1 1 0 Mitochondrial matrix Mmp37 | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:76335-76838 Augustus predicted protein sequence Tomato scaffold403_contigs=6~76335-76838 Trypan_PARP PF05887.6 g34093.t1 - 0.0016 18.2 0.4 0.0022 17.7 0.3 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:1-269 Augustus predicted protein sequence Tomato scaffold1142_contigs=5~1-269 DUF3245 PF11595.3 g73546.t1 - 0.065 13.5 0.9 0.069 13.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3245) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:1550-1819 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~1550-1819 Ribosomal_L15e PF00827.12 g67522.t1 - 0.0094 15.4 0.4 0.01 15.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:159967-160356 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~159967-160356 DUF829 PF05705.9 g54212.t1 - 0.1 12.2 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:25169-25766 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~25169-25766 Dehydrin PF00257.14 g50343.t1 - 0.0058 16.9 2.8 0.0066 16.7 1.9 1.1 1 0 0 1 1 1 1 Dehydrin | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:123390-123662 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~123390-123662 Dynactin_p62 PF05502.8 g19606.t1 - 0.11 11.2 0 0.14 10.9 0 1.1 1 0 0 1 1 1 0 Dynactin p62 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:180195-182303 Augustus predicted protein sequence Tomato scaffold756_contigs=8~180195-182303 PTRF_SDPR PF15237.1 g47573.t1 - 0.034 13.5 1.2 0.039 13.3 0.9 1.1 1 0 0 1 1 1 0 PTRF/SDPR family | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:602109-603321 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~602109-603321 ORF6C PF10552.4 g34080.t1 - 0.069 12.8 0.4 0.41 10.3 0.1 2.3 3 0 0 3 3 3 0 ORF6C domain | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:349897-350853 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~349897-350853 Angiomotin_C PF12240.3 g25983.t1 - 0.027 13.9 0.2 0.032 13.7 0.1 1.1 1 0 0 1 1 1 0 Angiomotin C terminal | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:152868-153327 Augustus predicted protein sequence Tomato scaffold941_contigs=6~152868-153327 CENP-B_dimeris PF09026.5 g74899.t1 - 0.023 14.9 7.7 0.023 14.9 5.3 2.3 2 1 0 2 2 2 0 Centromere protein B dimerisation domain | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:141139-143517 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~141139-143517 Rootletin PF15035.1 g3057.t1 - 0.0056 16.6 6.8 0.0056 16.6 4.7 1.5 1 1 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:153899-154372 Augustus predicted protein sequence Tomato scaffold258_contigs=4~153899-154372 DegS PF05384.6 g47282.t1 - 0.044 12.9 0.2 0.077 12.2 0.1 1.3 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:56794-59602 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~56794-59602 DUF4178 PF13785.1 g16766.t1 - 0.086 12.8 1.3 0.37 10.7 0.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4178) | Ref_seq=scaffold680_contigs=7, transcript_loc=scaffold680_contigs=7:118488-119742 Augustus predicted protein sequence Tomato scaffold680_contigs=7~118488-119742 T2SG PF08334.6 g12915.t1 - 0.051 13.3 0 0.087 12.5 0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein G | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:348027-349468 Augustus predicted protein sequence Tomato scaffold561_contigs=10~348027-349468 Diphtheria_C PF02763.9 g87515.t1 - 0.038 13.4 0.3 6 6.2 0 2.1 2 0 0 2 2 2 0 Diphtheria toxin, C domain | Ref_seq=scaffold3207_contigs=1, transcript_loc=scaffold3207_contigs=1:1309-2119 Augustus predicted protein sequence Tomato scaffold3207_contigs=1~1309-2119 PTPS PF01242.14 g70747.t1 - 0.091 12.4 0 1 9 0 1.9 1 1 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:11491-12445 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~11491-12445 TRAP_alpha PF03896.11 g47242.t1 - 0.66 8.9 6.5 0.9 8.4 4.5 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:316234-318286 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~316234-318286 SR-25 PF10500.4 g34489.t1 - 0.095 12.1 5.9 0.1 12 4.1 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:109010-110493 Augustus predicted protein sequence Tomato scaffold1151_contigs=2~109010-110493 Reo_sigmaC PF04582.7 g57021.t1 - 0.026 13.7 1 0.03 13.4 0.7 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold1825_contigs=2, transcript_loc=scaffold1825_contigs=2:27472-27813 Augustus predicted protein sequence Tomato scaffold1825_contigs=2~27472-27813 zf-BED PF02892.10 g79441.t1 - 0.016 14.9 0.5 0.016 14.9 0.3 1.8 2 0 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:82336-83740 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~82336-83740 CEP170_C PF15308.1 g44879.t1 - 0.11 10.7 1.4 0.12 10.6 1 1 1 0 0 1 1 1 0 CEP170 C-terminus | Ref_seq=scaffold1441_contigs=1, transcript_loc=scaffold1441_contigs=1:55515-55769 Augustus predicted protein sequence Tomato scaffold1441_contigs=1~55515-55769 Retrotrans_gag PF03732.12 g48582.t1 - 0.00016 21.6 0 0.00024 21.1 0 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:374995-375450 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~374995-375450 POX PF07526.6 g21873.t1 - 0.13 12.4 1 0.15 12.2 0.7 1 1 0 0 1 1 1 0 Associated with HOX | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:126686-126952 Augustus predicted protein sequence Tomato scaffold817_contigs=11~126686-126952 Josephin PF02099.12 g75636.t1 - 0.084 12.4 0.1 0.089 12.4 0 1.1 1 0 0 1 1 1 0 Josephin | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:152020-152256 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~152020-152256 G0-G1_switch_2 PF15103.1 g40325.t1 - 0.022 14.9 1.4 0.042 14 0.1 1.8 1 1 1 2 2 2 0 G0/G1 switch protein 2 | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:163793-164083 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~163793-164083 KxDL PF10241.4 g37533.t1 - 0.091 12.6 0.8 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:121357-122181 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~121357-122181 zf-CCHC PF00098.18 g43521.t1 - 0.00016 21.4 0.8 0.00034 20.3 0.6 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:152612-153957 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~152612-153957 Vmethyltransf_C PF08456.5 g10823.t1 - 0.15 11.4 2.1 0.2 11 1.4 1.1 1 0 0 1 1 1 0 Viral methyltransferase C-terminal | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:237736-238632 Augustus predicted protein sequence Tomato scaffold507_contigs=4~237736-238632 FRG2 PF15315.1 g30065.t1 - 0.059 13.3 5.1 0.071 13 3.5 1 1 0 0 1 1 1 0 Facioscapulohumeral muscular dystrophy candidate 2 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:400889-401403 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~400889-401403 Peptidase_M20 PF01546.23 g19561.t1 - 0.11 12 0 0.13 11.7 0 1.1 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:43375-43782 Augustus predicted protein sequence Tomato scaffold756_contigs=8~43375-43782 Tox-HNH-HHH PF15637.1 g69933.t1 - 0.0028 17.4 0 0.04 13.6 0 2.2 2 0 0 2 2 2 1 HNH/Endo VII superfamily nuclease toxin with a HHH motif | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:33281-37394 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~33281-37394 A2M PF00207.17 g14400.t1 - 0.03 13.8 0.1 0.099 12.2 0 1.9 2 0 0 2 2 2 0 Alpha-2-macroglobulin family | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:241848-243458 Augustus predicted protein sequence Tomato scaffold594_contigs=19~241848-243458 DUF2815 PF10991.3 g79408.t1 - 0.023 14.2 0.1 0.025 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2815) | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:89185-89415 Augustus predicted protein sequence Tomato scaffold2694_contigs=28~89185-89415 zf-CCHC PF00098.18 g54906.t1 - 0.0000051 26.1 6.8 0.0000078 25.5 4.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:139978-140376 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~139978-140376 Adeno_PIX PF03955.9 g67901.t1 - 0.3 11.6 1.8 0.35 11.3 1.3 1.1 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:185246-185449 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~185246-185449 TEX19 PF15553.1 g55395.t1 - 0.14 11.9 0.3 0.21 11.4 0.2 1.4 1 1 0 1 1 1 0 Testis-expressed protein 19 | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:45819-46298 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~45819-46298 NESP55 PF06390.7 g59878.t1 - 0.0051 16.2 0.6 0.0058 16 0.4 1 1 0 0 1 1 1 1 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:70273-72054 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~70273-72054 Peroxin-3 PF04882.7 g77533.t1 - 0.13 10.9 1.2 0.15 10.7 0.8 1.1 1 0 0 1 1 1 0 Peroxin-3 | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:330655-331074 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~330655-331074 bZIP_2 PF07716.10 g83056.t1 - 0.024 14.4 1.1 0.078 12.8 0.2 2.1 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:32125-32658 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~32125-32658 HR1 PF02185.11 g30757.t1 - 0.32 10.7 2.8 0.46 10.2 1.9 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:231618-233763 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~231618-233763 DUF3188 PF11384.3 g20718.t1 - 0.0037 16.8 0.1 2.9 7.5 0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3188) | Ref_seq=scaffold780_contigs=2, transcript_loc=scaffold780_contigs=2:1-580 Augustus predicted protein sequence Tomato scaffold780_contigs=2~1-580 YlqD PF11068.3 g58742.t1 - 1.7 8.7 6.1 2 8.4 4.2 1.1 1 0 0 1 1 1 0 YlqD protein | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:65834-66085 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~65834-66085 LRR_5 PF13306.1 g75986.t1 - 0.078 12.6 0 0.15 11.7 0 1.4 1 0 0 1 1 1 0 Leucine rich repeats (6 copies) | Ref_seq=scaffold2616_contigs=5, transcript_loc=scaffold2616_contigs=5:4223-4798 Augustus predicted protein sequence Tomato scaffold2616_contigs=5~4223-4798 ATHILA PF03078.10 g66929.t1 - 1.4E-010 40.3 0.1 1.6E-010 40.2 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:84661-85095 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~84661-85095 TMF_TATA_bd PF12325.3 g18730.t1 - 0.079 12.6 2.5 0.095 12.4 1.8 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:310033-310413 Augustus predicted protein sequence Tomato scaffold731_contigs=13~310033-310413 RFX1_trans_act PF04589.8 g26794.t1 - 1.1 8.9 4.7 11 5.7 0.2 2.1 2 0 0 2 2 2 0 RFX1 transcription activation region | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:42152-42882 Augustus predicted protein sequence Tomato scaffold961_contigs=8~42152-42882 CDK5_activator PF03261.10 g76931.t1 - 0.00075 18.9 0.1 0.51 9.6 0 2 1 1 1 2 2 2 2 Cyclin-dependent kinase 5 activator protein | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:76368-76810 Augustus predicted protein sequence Tomato scaffold2642_contigs=12~76368-76810 Cactin_mid PF10312.4 g46034.t1 - 0.05 12.8 0 0.078 12.2 0 1.3 1 1 0 1 1 1 0 Conserved mid region of cactin | Ref_seq=scaffold1473_contigs=6, transcript_loc=scaffold1473_contigs=6:1569-1985 Augustus predicted protein sequence Tomato scaffold1473_contigs=6~1569-1985 DUF3586 PF12131.3 g47373.t1 - 0.084 12.9 0 0.14 12.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3586) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:302198-306703 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~302198-306703 RbsD_FucU PF05025.8 g86712.t1 - 0.11 12.7 0.8 0.13 12.5 0.6 1.1 1 0 0 1 1 1 0 RbsD / FucU transport protein family | Ref_seq=scaffold2884_contigs=1, transcript_loc=scaffold2884_contigs=1:21419-21913 Augustus predicted protein sequence Tomato scaffold2884_contigs=1~21419-21913 FAM176 PF14851.1 g9153.t1 - 0.0061 16.2 2.5 0.0096 15.6 1.7 1.3 1 0 0 1 1 1 1 FAM176 family | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:106176-106785 Augustus predicted protein sequence Tomato scaffold448_contigs=2~106176-106785 DUF3736 PF12540.3 g71698.t1 - 0.12 12.6 3.9 0.15 12.2 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3736) | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:162323-162822 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~162323-162822 XkdW PF09636.5 g68197.t1 - 0.026 14.3 1.1 0.045 13.6 0.6 1.5 1 1 0 1 1 1 0 XkdW protein | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:105986-109549 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~105986-109549 NMDAR2_C PF10565.4 g18777.t1 - 0.057 12.1 0.9 0.06 12 0.6 1 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:429840-430103 Augustus predicted protein sequence Tomato scaffold731_contigs=13~429840-430103 SinI PF08671.5 g24036.t1 - 0.39 10.1 2.4 3.2 7.2 0 2.3 2 0 0 2 2 2 0 Anti-repressor SinI | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:177140-177676 Augustus predicted protein sequence Tomato scaffold875_contigs=10~177140-177676 ATHILA PF03078.10 g20105.t1 - 0.0000002 29.9 0 0.000083 21.3 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:336441-337467 Augustus predicted protein sequence Tomato scaffold767_contigs=5~336441-337467 DUF4063 PF13272.1 g56258.t1 - 0.1 12.4 0.2 14 5.4 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4063) | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:91612-92336 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~91612-92336 TPR_MLP1_2 PF07926.7 g8503.t1 - 0.084 12.6 3.2 0.051 13.3 0.5 1.7 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:28531-30514 Augustus predicted protein sequence Tomato scaffold428_contigs=8~28531-30514 RVT_3 PF13456.1 g76785.t1 - 0.1 12.4 0 0.18 11.6 0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:663724-668597 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~663724-668597 LRV PF01816.12 g12660.t1 - 0.023 14.8 1.1 0.052 13.7 0.7 1.7 1 0 0 1 1 1 0 Leucine rich repeat variant | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:653788-655222 Augustus predicted protein sequence Tomato scaffold556_contigs=11~653788-655222 DUF972 PF06156.8 g4957.t1 - 0.099 12.9 2.7 9 6.6 2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:51316-52765 Augustus predicted protein sequence Tomato scaffold312_contigs=3~51316-52765 EGF_CA PF07645.10 g539.t1 - 0.067 13.1 0.6 0.096 12.6 0.1 1.5 2 0 0 2 2 2 0 Calcium-binding EGF domain | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:50783-51058 Augustus predicted protein sequence Tomato scaffold52_contigs=2~50783-51058 DUF1002 PF06207.6 g50054.t1 - 0.11 11.8 0.1 0.12 11.6 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:39551-40644 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~39551-40644 DUF3584 PF12128.3 g52441.t1 - 0.0018 15.7 6.6 0.002 15.5 4.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:62370-63168 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~62370-63168 Toxin_34 PF08396.5 g55710.t1 - 0.1 13.1 3.6 0.12 12.9 2.5 1.2 1 0 0 1 1 1 0 Spider toxin omega agatoxin/Tx1 family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:12935-14536 Augustus predicted protein sequence Tomato scaffold1765_contigs=2~12935-14536 TMCO5 PF14992.1 g13940.t1 - 0.048 12.7 4.3 0.06 12.4 3 1.1 1 0 0 1 1 1 0 TMCO5 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:621789-622685 Augustus predicted protein sequence Tomato scaffold582_contigs=8~621789-622685 PAN_2 PF08276.6 g75197.t1 - 0.054 13.3 0.3 0.14 12 0.2 1.6 1 0 0 1 1 1 0 PAN-like domain | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:745795-751020 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~745795-751020 Trypan_PARP PF05887.6 g29984.t1 - 3.4 7.4 10.2 4 7.2 7.1 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:58306-58614 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~58306-58614 DUF3847 PF12958.2 g76703.t1 - 0.15 11.8 0.1 0.24 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:395583-398678 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~395583-398678 zf-CCHC_5 PF14787.1 g67479.t1 - 0.13 11.7 5.4 0.24 10.9 3.8 1.4 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:20442-22173 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~20442-22173 PAS_4 PF08448.5 g10831.t1 - 0.11 12.4 0.1 0.18 11.8 0 1.3 1 0 0 1 1 1 0 PAS fold | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:253962-255463 Augustus predicted protein sequence Tomato scaffold507_contigs=4~253962-255463 Daxx PF03344.10 g2946.t1 - 0.017 13.6 13.8 0.017 13.6 9.6 1.2 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:176666-178845 Augustus predicted protein sequence Tomato scaffold257_contigs=2~176666-178845 ClpB_D2-small PF10431.4 g37829.t1 - 0.047 13.5 0.7 0.065 13.1 0.5 1.2 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:6771-7088 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~6771-7088 MFS_1 PF07690.11 g50271.t1 - 0.095 11.4 0 0.12 11 0 1 1 0 0 1 1 1 0 Major Facilitator Superfamily | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:80579-80908 Augustus predicted protein sequence Tomato scaffold1562_contigs=2~80579-80908 Adaptin_binding PF10199.4 g76157.t1 - 0.19 11.9 9.9 0.45 10.7 6.8 1.6 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:944009-944797 Augustus predicted protein sequence Tomato scaffold2618_contigs=26~944009-944797 RVT_3 PF13456.1 g3493.t1 - 0.072 12.8 0 0.17 11.6 0 1.5 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold274_contigs=4, transcript_loc=scaffold274_contigs=4:99899-100498 Augustus predicted protein sequence Tomato scaffold274_contigs=4~99899-100498 FBA_1 PF07734.8 g34506.t1 - 0.000000066 32.4 0 0.00000025 30.5 0 1.9 2 1 0 2 2 2 1 F-box associated | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:36355-37040 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~36355-37040 IBV_3B PF03622.8 g87700.t1 - 0.00000004 33.1 0 0.013 15.4 0 2.3 2 0 0 2 2 2 2 IBV 3B protein | Ref_seq=scaffold3678_contigs=1, transcript_loc=scaffold3678_contigs=1:1-1633 Augustus predicted protein sequence Tomato scaffold3678_contigs=1~1-1633 Fic_N PF13784.1 g70056.t1 - 0.18 11.6 1.6 10 6 0.1 2.3 1 1 1 2 2 2 0 Fic/DOC family N-terminal | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:26059-28622 Augustus predicted protein sequence Tomato scaffold2321_contigs=13~26059-28622 DUF1395 PF07160.7 g66202.t1 - 0.034 13.6 0.3 0.045 13.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:95369-96319 Augustus predicted protein sequence Tomato scaffold2154_contigs=6~95369-96319 PSI_8 PF00796.13 g31907.t1 - 0.13 11.8 0.7 0.31 10.6 0.5 1.6 1 0 0 1 1 1 0 Photosystem I reaction centre subunit VIII | Ref_seq=scaffold1094_contigs=5, transcript_loc=scaffold1094_contigs=5:79445-79924 Augustus predicted protein sequence Tomato scaffold1094_contigs=5~79445-79924 RVT_3 PF13456.1 g61078.t1 - 0.00022 20.9 0 0.00048 19.8 0 1.6 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:443989-444372 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~443989-444372 KCl_Cotrans_1 PF03522.10 g21971.t1 - 0.08 12.4 0.6 1.3 8.5 0 2.4 2 0 0 2 2 2 0 K-Cl Co-transporter type 1 (KCC1) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:414098-414945 Augustus predicted protein sequence Tomato scaffold817_contigs=11~414098-414945 Reticulon PF02453.12 g82500.t1 - 0.00012 21.6 0.3 0.23 11 0.3 2.2 2 0 0 2 2 2 2 Reticulon | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:20053-22183 Augustus predicted protein sequence Tomato scaffold2745_contigs=7~20053-22183 ATHILA PF03078.10 g52065.t1 - 0.079 11.5 0 0.097 11.2 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:391045-395063 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~391045-395063 Retrotrans_gag PF03732.12 g17246.t1 - 0.015 15.3 0 0.037 14 0 1.7 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:103096-103812 Augustus predicted protein sequence Tomato scaffold701_contigs=5~103096-103812 DUF4099 PF13351.1 g1493.t1 - 0.094 12.6 0 12 5.8 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4099) | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:42217-42531 Augustus predicted protein sequence Tomato scaffold204_contigs=2~42217-42531 DUF3913 PF13052.1 g87245.t1 - 0.16 11.9 0.2 0.22 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3913) | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:7203-7485 Augustus predicted protein sequence Tomato scaffold2972_contigs=1~7203-7485 zf-CCHC PF00098.18 g19835.t1 - 0.00033 20.4 0.7 0.00065 19.5 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:35644-36624 Augustus predicted protein sequence Tomato scaffold760_contigs=13~35644-36624 SopA_C PF13979.1 g81481.t1 - 0.069 12.7 0.2 0.081 12.5 0.2 1.1 1 0 0 1 1 1 0 SopA-like catalytic domain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:314286-314612 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~314286-314612 PQ-loop PF04193.9 g23315.t1 - 0.0092 15.5 0.6 0.013 15 0.4 1.2 1 0 0 1 1 1 1 PQ loop repeat | Ref_seq=scaffold857_contigs=2, transcript_loc=scaffold857_contigs=2:18305-18691 Augustus predicted protein sequence Tomato scaffold857_contigs=2~18305-18691 DUF1581 PF07619.6 g6459.t1 - 0.058 13.3 0.1 0.082 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1581) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:191-466 Augustus predicted protein sequence Tomato scaffold375_contigs=9~191-466 DUF1168 PF06658.7 g9675.t1 - 0.12 11.8 34.5 0.16 11.5 23.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:33970-34812 Augustus predicted protein sequence Tomato scaffold469_contigs=1~33970-34812 DUF1690 PF07956.6 g60756.t1 - 0.082 12.8 6.3 0.1 12.5 4.4 1.1 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:238681-238959 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~238681-238959 ATHILA PF03078.10 g8922.t1 - 0.000055 21.9 0.1 0.000066 21.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:282859-283684 Augustus predicted protein sequence Tomato scaffold442_contigs=14~282859-283684 Transposase_28 PF04195.7 g23898.t1 - 0.0047 16.2 0.2 0.32 10.2 0.1 2.2 2 0 0 2 2 2 2 Putative gypsy type transposon | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:30375-35228 Augustus predicted protein sequence Tomato scaffold874_contigs=5~30375-35228 Dsh_C PF12316.3 g45685.t1 - 0.017 15.2 6.8 0.02 14.9 4.7 1.1 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:374737-375338 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~374737-375338 GAF_3 PF13492.1 g7556.t1 - 0.14 12.2 0 0.18 11.9 0 1.2 1 0 0 1 1 1 0 GAF domain | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:169343-175004 Augustus predicted protein sequence Tomato scaffold404_contigs=9~169343-175004 Cortex-I_coil PF09304.5 g75793.t1 - 0.000062 22.9 5.3 0.0073 16.3 0.8 2.4 1 1 1 2 2 2 2 Cortexillin I, coiled coil | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:29257-30780 Augustus predicted protein sequence Tomato scaffold2611_contigs=18~29257-30780 Rad60-SLD PF11976.3 g83733.t1 - 0.06 13 0 0.084 12.5 0 1.2 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1606107-1606391 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1606107-1606391 DUF1179 PF06678.6 g61901.t1 - 0.087 13.1 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1179) | Ref_seq=scaffold1980_contigs=4, transcript_loc=scaffold1980_contigs=4:16897-17545 Augustus predicted protein sequence Tomato scaffold1980_contigs=4~16897-17545 DUF1266 PF06889.6 g34020.t1 - 3.7 7.3 8.9 4.5 7 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1266) | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:104760-105050 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~104760-105050 TT_ORF1 PF02956.9 g6165.t1 - 2.4 6.5 4 3.3 6 2.8 1.1 1 0 0 1 1 1 0 TT viral orf 1 | Ref_seq=scaffold352_contigs=11, transcript_loc=scaffold352_contigs=11:291756-292484 Augustus predicted protein sequence Tomato scaffold352_contigs=11~291756-292484 IFP_35_N PF07334.8 g28483.t1 - 0.0078 16.1 5.8 0.27 11.2 1.2 2.3 1 1 1 2 2 2 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:32908-33381 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~32908-33381 DUF3856 PF12968.2 g78309.t1 - 0.046 13.5 0.1 0.058 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:99877-100489 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~99877-100489 zf-CCHC PF00098.18 g1959.t1 - 0.024 14.5 0.2 0.037 13.9 0.2 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:39334-40014 Augustus predicted protein sequence Tomato scaffold221_contigs=3~39334-40014 TMEM71 PF15121.1 g9191.t1 - 0.0033 17.1 0.2 0.0061 16.3 0 1.6 2 0 0 2 2 2 1 TMEM71 protein family | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:27820-29708 Augustus predicted protein sequence Tomato scaffold449_contigs=4~27820-29708 Ustilago_mating PF05722.7 g2038.t1 - 0.32 10.2 3.7 0.4 9.9 2.6 1.1 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:184198-184799 Augustus predicted protein sequence Tomato scaffold223_contigs=4~184198-184799 Ribosomal_60s PF00428.14 g23547.t1 - 1.1 9.6 7.6 12 6.4 0 2.3 2 0 0 2 2 2 0 60s Acidic ribosomal protein | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:70988-71572 Augustus predicted protein sequence Tomato scaffold863_contigs=2~70988-71572 Tropomyosin PF00261.15 g62237.t1 - 0.0034 16.4 6.1 0.0055 15.8 4.2 1.4 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:244454-246094 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~244454-246094 DUF4131 PF13567.1 g26282.t1 - 5.6 6.3 7.1 12 5.2 4.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:28465-30132 Augustus predicted protein sequence Tomato scaffold947_contigs=9~28465-30132 TMF_DNA_bd PF12329.3 g77804.t1 - 0.13 12.1 5.6 0.42 10.4 3.9 1.9 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:405410-406136 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~405410-406136 Nucleoplasmin PF03066.10 g26954.t1 - 0.0011 18.4 12.7 0.0015 18 8.8 1.4 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold963_contigs=16, transcript_loc=scaffold963_contigs=16:46021-49917 Augustus predicted protein sequence Tomato scaffold963_contigs=16~46021-49917 CAF1-p150_C2 PF15539.1 g84062.t1 - 0.24 10.4 1.6 0.25 10.4 0.1 1.6 2 0 0 2 2 2 0 CAF1 complex subunit p150, region binding to CAF1-p60 at C-term | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:267118-268054 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~267118-268054 HAP1_N PF04849.8 g77743.t1 - 0.047 12.6 3.5 0.068 12.1 2.4 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:201144-201823 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~201144-201823 Conotoxin PF02950.12 g61510.t1 - 0.063 14 0.1 0.1 13.4 0 1.4 1 0 0 1 1 1 0 Conotoxin | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:637608-637922 Augustus predicted protein sequence Tomato scaffold1970_contigs=14~637608-637922 CbiJ PF02571.9 g84862.t1 - 0.091 12 0.2 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK | Ref_seq=scaffold2782_contigs=1, transcript_loc=scaffold2782_contigs=1:82138-84260 Augustus predicted protein sequence Tomato scaffold2782_contigs=1~82138-84260 WD40_alt PF14077.1 g74865.t1 - 0.022 14.3 0 0.082 12.5 0 1.9 1 0 0 1 1 1 0 Alternative WD40 repeat motif | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:2578-5972 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~2578-5972 RVT_3 PF13456.1 g73104.t1 - 0.006 16.3 0.1 0.0085 15.8 0.1 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:446786-447109 Augustus predicted protein sequence Tomato scaffold2444_contigs=49~446786-447109 DUF4286 PF14114.1 g33904.t1 - 0.013 15.7 0.4 0.12 12.6 0.3 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:28407-28622 Augustus predicted protein sequence Tomato scaffold1137_contigs=5~28407-28622 Inhibitor_I68 PF10468.4 g19529.t1 - 0.093 12.9 0.5 0.24 11.6 0.2 1.8 1 1 1 2 2 2 0 Carboxypeptidase inhibitor I68 | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:19009-20578 Augustus predicted protein sequence Tomato scaffold754_contigs=7~19009-20578 Rod_cone_degen PF15201.1 g74836.t1 - 0.0075 16 0.7 0.063 13.1 0.1 2.5 2 0 0 2 2 2 1 Progressive rod-cone degeneration | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:38783-39783 Augustus predicted protein sequence Tomato scaffold2571_contigs=16~38783-39783 Chromo PF00385.19 g79513.t1 - 0.0000043 26.3 0 0.0000056 25.9 0 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:79713-80033 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~79713-80033 HSBP1 PF06825.7 g50070.t1 - 0.031 13.8 0.5 0.36 10.4 0.1 2.3 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:117707-118602 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~117707-118602 UPF0547 PF10571.4 g10649.t1 - 0.098 12.3 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:128684-133164 Augustus predicted protein sequence Tomato scaffold503_contigs=7~128684-133164 ImmE5 PF11480.3 g13372.t1 - 0.11 12.2 0 0.17 11.7 0 1.3 1 0 0 1 1 1 0 Colicin-E5 Imm protein | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:394584-394841 Augustus predicted protein sequence Tomato scaffold572_contigs=22~394584-394841 Laminin_EGF PF00053.19 g17123.t1 - 0.39 10.6 2.7 9.1 6.2 0.1 2.2 2 0 0 2 2 2 0 Laminin EGF-like (Domains III and V) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:244273-246507 Augustus predicted protein sequence Tomato scaffold694_contigs=2~244273-246507 Fork_head_N PF08430.7 g42785.t1 - 0.093 13.1 0.4 0.11 12.8 0.3 1.1 1 0 0 1 1 1 0 Forkhead N-terminal region | Ref_seq=scaffold1372_contigs=4, transcript_loc=scaffold1372_contigs=4:47933-48271 Augustus predicted protein sequence Tomato scaffold1372_contigs=4~47933-48271 SelB-wing_1 PF09105.5 g16907.t1 - 1.1 8.9 3.9 11 5.8 0 3 2 1 1 3 3 3 0 Elongation factor SelB, winged helix | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:9429-10170 Augustus predicted protein sequence Tomato scaffold687_contigs=8~9429-10170 ATHILA PF03078.10 g29778.t1 - 0.0000023 26.5 0 0.0000032 26 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:63366-68266 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~63366-68266 DUF2130 PF09903.4 g2062.t1 - 0.041 12.6 0 0.046 12.4 0 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) | Ref_seq=scaffold224_contigs=2, transcript_loc=scaffold224_contigs=2:6685-10206 Augustus predicted protein sequence Tomato scaffold224_contigs=2~6685-10206 PsbP PF01789.11 g1956.t1 - 0.04 13.3 0.1 0.21 11 0 1.9 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:33002-34258 Augustus predicted protein sequence Tomato scaffold221_contigs=3~33002-34258 BLVR PF06375.6 g82164.t1 - 0.0075 16.1 19.7 0.0075 16.1 13.6 2.6 3 0 0 3 3 3 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:567158-569285 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~567158-569285 UBN2_3 PF14244.1 g38938.t1 - 0.098 12.2 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1259_contigs=1, transcript_loc=scaffold1259_contigs=1:1-1399 Augustus predicted protein sequence Tomato scaffold1259_contigs=1~1-1399 CENP-B_dimeris PF09026.5 g83241.t1 - 0.047 13.9 1.2 0.047 13.9 0.8 1.6 2 0 0 2 2 2 0 Centromere protein B dimerisation domain | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:34866-39601 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~34866-39601 ox_reductase_C PF08635.5 g2639.t1 - 0.1 12 0 0.18 11.2 0 1.3 1 0 0 1 1 1 0 Putative oxidoreductase C terminal | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:157197-157733 Augustus predicted protein sequence Tomato scaffold247_contigs=8~157197-157733 DUF2442 PF10387.4 g19668.t1 - 0.1 12.6 0 8.2 6.5 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2442) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:36795-38168 Augustus predicted protein sequence Tomato scaffold757_contigs=4~36795-38168 DUF1497 PF07384.6 g58268.t1 - 0.043 13.9 1.6 9.8 6.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1497) | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:50173-51152 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~50173-51152 XFP_C PF09363.5 g15583.t1 - 0.16 11.4 0.1 1.4 8.3 0 1.9 1 1 1 2 2 2 0 XFP C-terminal domain | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:4869-5206 Augustus predicted protein sequence Tomato scaffold635_contigs=5~4869-5206 APG5 PF04106.7 g5328.t1 - 0.0056 16.1 0 0.0056 16.1 0 1.1 1 0 0 1 1 1 1 Autophagy protein Apg5 | Ref_seq=scaffold324_contigs=5, transcript_loc=scaffold324_contigs=5:19408-20100 Augustus predicted protein sequence Tomato scaffold324_contigs=5~19408-20100 FlhE PF06366.8 g7917.t1 - 0.00016 21.5 0.2 0.67 9.8 0 2.4 1 1 1 2 2 2 2 Flagellar protein FlhE | Ref_seq=scaffold410_contigs=1, transcript_loc=scaffold410_contigs=1:3914-5242 Augustus predicted protein sequence Tomato scaffold410_contigs=1~3914-5242 V_ATPase_I PF01496.14 g36470.t1 - 0.096 10.5 0.2 0.13 10.1 0.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:74079-77172 Augustus predicted protein sequence Tomato scaffold1196_contigs=5~74079-77172 FTP PF07504.8 g48497.t1 - 0.12 11.8 0 0.26 10.7 0 1.6 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:97672-98054 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~97672-98054 PalH PF08733.5 g4932.t1 - 0.052 12.3 0.9 0.065 12 0.6 1.1 1 0 0 1 1 1 0 PalH/RIM21 | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:142415-143446 Augustus predicted protein sequence Tomato scaffold311_contigs=5~142415-143446 Trypan_PARP PF05887.6 g37220.t1 - 0.35 10.6 13.4 0.46 10.2 9.3 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:49013-49246 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~49013-49246 Cep57_MT_bd PF06657.8 g17894.t1 - 0.004 17 0.4 0.0087 15.9 0.3 1.6 1 0 0 1 1 1 1 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:12658-13032 Augustus predicted protein sequence Tomato scaffold717_contigs=7~12658-13032 DUF1985 PF09331.6 g64488.t1 - 0.0011 18.7 0 0.0022 17.8 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:63736-68323 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~63736-68323 VGCC_beta4Aa_N PF12052.3 g52992.t1 - 0.0019 18 0.6 0.0019 18 0.4 1.7 2 0 0 2 2 2 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:11655-14996 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~11655-14996 OrfB_Zn_ribbon PF07282.6 g83324.t1 - 0.13 11.9 1.1 0.4 10.3 0 2.3 3 0 0 3 3 3 0 Putative transposase DNA-binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:68368-71471 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~68368-71471 TFIIA PF03153.8 g56994.t1 - 0.014 15.3 0.5 0.018 14.9 0.3 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:11337-12221 Augustus predicted protein sequence Tomato scaffold1824_contigs=4~11337-12221 NUDIX_4 PF14815.1 g73337.t1 - 0.0077 15.6 0 0.0078 15.6 0 1.1 1 0 0 1 1 1 1 NUDIX domain | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:221108-221425 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~221108-221425 DUF1680 PF07944.7 g14497.t1 - 0.075 11.2 0 0.086 11 0 1 1 0 0 1 1 1 0 Putative glycosyl hydrolase of unknown function (DUF1680) | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:5960-6284 Augustus predicted protein sequence Tomato scaffold595_contigs=2~5960-6284 Dimer_Tnp_hAT PF05699.9 g73354.t1 - 0.017 14.7 0 0.042 13.4 0 1.7 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:277500-280473 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~277500-280473 DUF3562 PF12085.3 g2813.t1 - 0.12 12.1 0.1 0.21 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:92473-92718 Augustus predicted protein sequence Tomato scaffold255_contigs=10~92473-92718 zf-RING_5 PF14634.1 g41208.t1 - 0.015 14.9 0 0.048 13.3 0 1.8 1 1 0 1 1 1 0 zinc-RING finger domain | Ref_seq=scaffold1326_contigs=8, transcript_loc=scaffold1326_contigs=8:350071-351042 Augustus predicted protein sequence Tomato scaffold1326_contigs=8~350071-351042 Auxin_inducible PF02519.9 g20251.t1 - 5.4 7.1 5.6 4 7.5 0 2.3 2 0 0 2 2 2 0 Auxin responsive protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:424419-425606 Augustus predicted protein sequence Tomato scaffold768_contigs=4~424419-425606 DUF169 PF02596.10 g31304.t1 - 0.14 11.4 0.2 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised ArCR, COG2043 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:455533-455766 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~455533-455766 CCDC66 PF15236.1 g83364.t1 - 0.32 10.6 28.4 0.37 10.3 19.7 1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:202028-202234 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~202028-202234 UBN2 PF14223.1 g18517.t1 - 0.00035 20.3 0.5 0.023 14.4 0.1 2.3 2 0 0 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:183387-183851 Augustus predicted protein sequence Tomato scaffold725_contigs=8~183387-183851 DBD_Tnp_Mut PF03108.10 g30443.t1 - 0.0000002 30.4 0.1 0.00000032 29.8 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:493363-493776 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~493363-493776 DUF3122 PF11320.3 g58414.t1 - 0.0047 16.8 0 3.8 7.4 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3122) | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:81782-82570 Augustus predicted protein sequence Tomato scaffold1861_contigs=7~81782-82570 DUF1281 PF06924.6 g68205.t1 - 0.077 12.3 0 0.1 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:142098-143552 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~142098-143552 BT1 PF03092.11 g75384.t1 - 0.042 12.5 0.1 0.047 12.3 0.1 1.1 1 0 0 1 1 1 0 BT1 family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:210333-210611 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~210333-210611 ATHILA PF03078.10 g32015.t1 - 0.0000043 25.5 0 0.0000086 24.5 0 1.4 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:138558-141836 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~138558-141836 RhoGEF PF00621.15 g74919.t1 - 0.023 14.5 0.3 0.028 14.3 0.2 1.3 1 1 0 1 1 1 0 RhoGEF domain | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:40149-40717 Augustus predicted protein sequence Tomato scaffold2578_contigs=10~40149-40717 Lzipper-MIP1 PF14389.1 g75785.t1 - 0.096 12.8 0.5 12 6 0 2.7 3 0 0 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:570-5412 Augustus predicted protein sequence Tomato scaffold2611_contigs=18~570-5412 DUF1423 PF07227.6 g60156.t1 - 0.00035 19.3 3.5 0.00042 19 2.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1423) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:179630-179944 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~179630-179944 ABG_transport PF03806.8 g45714.t1 - 0.03 12.3 0 0.033 12.1 0 1.1 1 0 0 1 1 1 0 AbgT putative transporter family | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:470726-471025 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~470726-471025 zf-CCHC PF00098.18 g5618.t1 - 0.00069 19.4 0.4 0.0012 18.6 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:162822-163337 Augustus predicted protein sequence Tomato scaffold334_contigs=13~162822-163337 DUF1465 PF07323.7 g75038.t1 - 0.037 13.5 0 0.042 13.3 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:1-904 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~1-904 HALZ PF02183.13 g72655.t1 - 0.016 14.8 4.7 0.043 13.5 0.3 2.5 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:149170-149691 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~149170-149691 CCDC66 PF15236.1 g79734.t1 - 0.31 10.6 3.9 0.35 10.4 2.7 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:365961-366347 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~365961-366347 Orn_Arg_deC_N PF02784.11 g14141.t1 - 0.022 13.9 0.1 0.029 13.5 0 1.1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:116541-116825 Augustus predicted protein sequence Tomato scaffold586_contigs=6~116541-116825 DUF4164 PF13747.1 g27744.t1 - 0.0008 19.4 0.1 0.0016 18.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4164) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:576045-577847 Augustus predicted protein sequence Tomato scaffold983_contigs=13~576045-577847 Flu_C_NS2 PF03555.9 g85761.t1 - 0.11 12.4 0.7 17 5.4 0 2.2 2 0 0 2 2 2 0 Influenza C non-structural protein (NS2) | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:65156-67442 Augustus predicted protein sequence Tomato scaffold2817_contigs=1~65156-67442 RVT_3 PF13456.1 g35276.t1 - 0.0053 16.4 0 0.0078 15.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1178_contigs=24, transcript_loc=scaffold1178_contigs=24:392642-393122 Augustus predicted protein sequence Tomato scaffold1178_contigs=24~392642-393122 DUF1754 PF08555.5 g21180.t1 - 0.0055 17.2 2.4 0.012 16.1 1.7 1.6 1 0 0 1 1 1 1 Eukaryotic family of unknown function (DUF1754) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:8509-12004 Augustus predicted protein sequence Tomato scaffold795_contigs=8~8509-12004 DUF1088 PF06469.6 g69368.t1 - 0.0057 16 3 0.0074 15.7 2.1 1.2 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1088) | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:15188-15902 Augustus predicted protein sequence Tomato scaffold2272_contigs=16~15188-15902 DUF2764 PF10962.3 g78333.t1 - 0.033 13.4 0 0.04 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2764) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:221771-222763 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~221771-222763 zf-CCHC PF00098.18 g61533.t1 - 0.0023 17.7 0.3 0.0033 17.2 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:83439-83777 Augustus predicted protein sequence Tomato scaffold1971_contigs=11~83439-83777 zf-CCHC PF00098.18 g53851.t1 - 0.00005 23 0.8 0.0001 22 0.6 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:337860-338237 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~337860-338237 ATP-synt_E PF05680.7 g72194.t1 - 0.051 13.5 1 0.051 13.5 0.7 2 2 0 0 2 2 2 0 ATP synthase E chain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:583985-586870 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~583985-586870 PRA-PH PF01503.12 g74448.t1 - 0.17 12.1 2.4 17 5.8 0 2.7 3 0 0 3 3 3 0 Phosphoribosyl-ATP pyrophosphohydrolase | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:85852-86939 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~85852-86939 NUDE_C PF04880.8 g86605.t1 - 0.025 14.9 0.5 0.033 14.5 0.3 1.2 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:12857-13682 Augustus predicted protein sequence Tomato scaffold2876_contigs=1~12857-13682 DUF309 PF03745.9 g65993.t1 - 0.023 14.1 0 0.039 13.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF309) | Ref_seq=scaffold2146_contigs=11, transcript_loc=scaffold2146_contigs=11:155029-155313 Augustus predicted protein sequence Tomato scaffold2146_contigs=11~155029-155313 bPH_1 PF08000.6 g63550.t1 - 0.016 14.8 0.1 0.018 14.6 0.1 1.1 1 0 0 1 1 1 0 Bacterial PH domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:454821-455364 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~454821-455364 NOA36 PF06524.7 g54515.t1 - 8.5 5.5 9.1 14 4.8 6.3 1.2 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:100700-101735 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~100700-101735 Bap31 PF05529.7 g20238.t1 - 1.9 7.9 5 2.6 7.4 3.5 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:401645-402429 Augustus predicted protein sequence Tomato scaffold768_contigs=4~401645-402429 Mesd PF10185.4 g13565.t1 - 0.12 12.1 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Chaperone for wingless signalling and trafficking of LDL receptor | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:80-355 Augustus predicted protein sequence Tomato scaffold578_contigs=5~80-355 Mannitol_dh_C PF08125.8 g7516.t1 - 0.076 12.1 0 0.089 11.9 0 1.1 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:89587-89910 Augustus predicted protein sequence Tomato scaffold403_contigs=6~89587-89910 Peptidase_S66 PF02016.10 g28480.t1 - 0.08 11.8 0 0.084 11.8 0 1.1 1 0 0 1 1 1 0 LD-carboxypeptidase | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:3907-4397 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~3907-4397 BTV_NS2 PF04514.7 g64536.t1 - 3.2 6.5 10.3 4.1 6.1 7.2 1.1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:267495-269345 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~267495-269345 Filament PF00038.16 g69981.t1 - 0.048 13.1 6.6 0.064 12.7 4.6 1.2 1 0 0 1 1 1 0 Intermediate filament protein | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:108456-109741 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~108456-109741 bZIP_2 PF07716.10 g74434.t1 - 0.059 13.1 0.9 0.1 12.4 0.6 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:50021-50254 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~50021-50254 DUF2594 PF10769.4 g78431.t1 - 0.13 12.3 0 0.31 11.1 0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:220644-222930 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~220644-222930 Transposase_28 PF04195.7 g27765.t1 - 0.12 11.7 0 0.22 10.8 0 1.4 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:655822-663799 Augustus predicted protein sequence Tomato scaffold983_contigs=13~655822-663799 zf-CCHC PF00098.18 g58061.t1 - 0.021 14.7 2 0.043 13.7 1.4 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:308215-309066 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~308215-309066 zf-CCHC PF00098.18 g44432.t1 - 0.0015 18.3 2 0.0022 17.8 1.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:181579-181896 Augustus predicted protein sequence Tomato scaffold1429_contigs=14~181579-181896 ATHILA PF03078.10 g40361.t1 - 0.00000006 31.6 0 0.000000072 31.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:252422-252688 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~252422-252688 Toxin_2 PF00451.14 g75222.t1 - 1 9.5 6.3 2.8 8.1 0.3 2.6 3 0 0 3 3 3 0 Scorpion short toxin, BmKK2 | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:921044-921376 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~921044-921376 Filament PF00038.16 g8614.t1 - 0.006 16 2.4 0.0083 15.6 1.7 1.1 1 0 0 1 1 1 1 Intermediate filament protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:244857-245748 Augustus predicted protein sequence Tomato scaffold429_contigs=9~244857-245748 DEC-1_N PF04625.8 g42810.t1 - 0.054 12.1 7.1 0.067 11.8 4.9 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:78085-78923 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~78085-78923 RRN9 PF10680.4 g70786.t1 - 0.32 10.7 0 0.32 10.7 0 1.9 2 0 0 2 2 2 0 RNA polymerase I specific transcription initiation factor | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:113174-113509 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~113174-113509 A2L_zn_ribbon PF08792.5 g55357.t1 - 0.034 13.6 0.1 0.051 13 0 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:73277-74308 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~73277-74308 YdjO PF14169.1 g8457.t1 - 0.1 12 0.1 0.2 11.1 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:72009-72413 Augustus predicted protein sequence Tomato scaffold427_contigs=11~72009-72413 Nnf1 PF03980.9 g1705.t1 - 0.068 13.1 1.1 0.074 13 0.7 1.1 1 0 0 1 1 1 0 Nnf1 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:195425-195661 Augustus predicted protein sequence Tomato scaffold213_contigs=5~195425-195661 PRESAN PF09687.5 g33915.t1 - 0.015 15.3 2 0.022 14.8 1.4 1.2 1 0 0 1 1 1 0 Plasmodium RESA N-terminal | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:108633-109037 Augustus predicted protein sequence Tomato scaffold1137_contigs=5~108633-109037 DUF1985 PF09331.6 g39142.t1 - 0.0000002 30.9 0.3 0.00000052 29.5 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:77030-78479 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~77030-78479 Ten_N PF06484.7 g29861.t1 - 0.053 12.6 0.1 0.063 12.3 0.1 1 1 0 0 1 1 1 0 Teneurin Intracellular Region | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:104601-107052 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~104601-107052 DUF1192 PF06698.6 g45516.t1 - 0.092 12.5 0.2 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:84058-86240 Augustus predicted protein sequence Tomato scaffold1448_contigs=3~84058-86240 DUF1091 PF06477.8 g47407.t1 - 0.028 14.8 0 0.03 14.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:423634-423870 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~423634-423870 DASH_Dad3 PF08656.5 g78336.t1 - 0.0066 16.1 1.6 2.6 7.8 0.3 2.2 2 0 0 2 2 2 2 DASH complex subunit Dad3 | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:224849-225884 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~224849-225884 ATHILA PF03078.10 g13840.t1 - 0.0078 14.8 0 0.17 10.4 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:357912-358442 Augustus predicted protein sequence Tomato scaffold582_contigs=8~357912-358442 GETHR PF05671.6 g7176.t1 - 1.5 8 4.9 99 2.2 3.4 2.8 1 1 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:326807-327067 Augustus predicted protein sequence Tomato scaffold387_contigs=7~326807-327067 Aldose_epim PF01263.15 g87506.t1 - 0.15 11.1 0 0.19 10.8 0 1.1 1 0 0 1 1 1 0 Aldose 1-epimerase | Ref_seq=scaffold3194_contigs=1, transcript_loc=scaffold3194_contigs=1:2048-2566 Augustus predicted protein sequence Tomato scaffold3194_contigs=1~2048-2566 Fanconi_A PF03511.9 g62827.t1 - 0.095 12.4 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Fanconi anaemia group A protein | Ref_seq=scaffold2009_contigs=4, transcript_loc=scaffold2009_contigs=4:25552-26019 Augustus predicted protein sequence Tomato scaffold2009_contigs=4~25552-26019 DUF2235 PF09994.4 g54431.t1 - 0.055 12.8 0.2 0.071 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:48664-49505 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~48664-49505 Nup54 PF13874.1 g26243.t1 - 0.037 13.6 4.5 0.031 13.9 1.3 2 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:272731-273318 Augustus predicted protein sequence Tomato scaffold945_contigs=10~272731-273318 Pox_A_type_inc PF04508.7 g7032.t1 - 6.3 6.8 7.1 4.8 7.2 1.3 3 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:279407-280426 Augustus predicted protein sequence Tomato scaffold386_contigs=10~279407-280426 PilM_2 PF11104.3 g21352.t1 - 0.013 14.3 0.2 0.015 14.2 0.1 1.1 1 0 0 1 1 1 0 Type IV pilus assembly protein PilM; | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:6127-6462 Augustus predicted protein sequence Tomato scaffold798_contigs=6~6127-6462 Siah-Interact_N PF09032.6 g53096.t1 - 0.054 13.5 0 0.082 12.9 0 1.3 1 0 0 1 1 1 0 Siah interacting protein, N terminal | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:177545-177901 Augustus predicted protein sequence Tomato scaffold1674_contigs=9~177545-177901 CCDC144C PF14915.1 g72282.t1 - 0.02 13.8 5.2 0.028 13.3 3.6 1.3 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:936596-937558 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~936596-937558 Trypan_PARP PF05887.6 g1789.t1 - 0.57 9.9 13.1 0.62 9.8 9.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:36972-37175 Augustus predicted protein sequence Tomato scaffold217_contigs=3~36972-37175 DHC_N1 PF08385.7 g49173.t1 - 0.032 12.6 0 0.041 12.2 0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:90971-91607 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~90971-91607 DUF2570 PF10828.3 g43288.t1 - 0.05 13.2 0.5 0.092 12.3 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:369674-370117 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~369674-370117 Colicin_C PF12106.3 g77639.t1 - 1.5 8.4 4.6 0.52 9.9 0.9 1.9 2 0 0 2 2 2 0 Colicin C terminal ribonuclease domain | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:295899-299239 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~295899-299239 PPV_E2_N PF00508.12 g14284.t1 - 0.11 11.7 0 0.24 10.5 0 1.6 2 0 0 2 2 2 0 E2 (early) protein, N terminal | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:176168-176959 Augustus predicted protein sequence Tomato scaffold587_contigs=13~176168-176959 Sporozoite_P67 PF05642.6 g39421.t1 - 3.5 5.3 4.7 3.6 5.3 3.3 1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:376672-376893 Augustus predicted protein sequence Tomato scaffold1269_contigs=10~376672-376893 Sec3-PIP2_bind PF15277.1 g1197.t1 - 0.055 13.3 0 0.14 11.9 0 1.6 2 0 0 2 2 2 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:135854-136749 Augustus predicted protein sequence Tomato scaffold193_contigs=2~135854-136749 Enolase_C PF00113.17 g10385.t1 - 0.000077 21.7 0 0.00011 21.2 0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain | Ref_seq=scaffold497_contigs=4, transcript_loc=scaffold497_contigs=4:80912-81715 Augustus predicted protein sequence Tomato scaffold497_contigs=4~80912-81715 Gemini_mov PF01708.11 g84716.t1 - 0.0063 16 0 0.012 15.1 0 1.4 1 0 0 1 1 1 1 Geminivirus putative movement protein | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:29864-30364 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~29864-30364 FXR1P_C PF12235.3 g81789.t1 - 0.58 10.2 5.8 0.75 9.8 4 1.1 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:734379-734696 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~734379-734696 BetaGal_dom2 PF10435.4 g85554.t1 - 0.018 14.3 0.2 0.021 14.1 0.2 1.1 1 0 0 1 1 1 0 Beta-galactosidase, domain 2 | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:17432-17737 Augustus predicted protein sequence Tomato scaffold2809_contigs=1~17432-17737 ATHILA PF03078.10 g77337.t1 - 0.00014 20.6 0.1 0.00015 20.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:63094-63363 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~63094-63363 DUF3484 PF11983.3 g33638.t1 - 0.00032 21.4 0.5 0.54 11.1 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3484) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:340280-341622 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~340280-341622 Exo_endo_phos PF03372.18 g69696.t1 - 0.078 12.9 0.2 7.6 6.3 0 2 1 1 1 2 2 2 0 Endonuclease/Exonuclease/phosphatase family | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:399992-400875 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~399992-400875 Transposase_28 PF04195.7 g65602.t1 - 0.00058 19.1 0.1 0.00092 18.5 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:103827-104682 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~103827-104682 LEAP-2 PF07359.6 g14599.t1 - 0.2 11.3 1.4 0.26 10.9 1 1.3 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:433-723 Augustus predicted protein sequence Tomato scaffold598_contigs=2~433-723 DUF4423 PF14394.1 g10656.t1 - 0.035 13.6 0.3 0.069 12.6 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:174187-175240 Augustus predicted protein sequence Tomato scaffold503_contigs=7~174187-175240 Cgr1 PF03879.9 g9718.t1 - 0.013 15.6 4.6 0.016 15.3 3.2 1.2 1 0 0 1 1 1 0 Cgr1 family | Ref_seq=scaffold473_contigs=14, transcript_loc=scaffold473_contigs=14:36315-37608 Augustus predicted protein sequence Tomato scaffold473_contigs=14~36315-37608 Gloverin PF10793.4 g4129.t1 - 0.035 13.7 0.5 0.04 13.5 0.4 1 1 0 0 1 1 1 0 Gloverin-like protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:72429-72677 Augustus predicted protein sequence Tomato scaffold293_contigs=5~72429-72677 Merozoite_SPAM PF07133.6 g54221.t1 - 0.0064 16.4 0.3 0.0088 15.9 0.2 1.2 1 0 0 1 1 1 1 Merozoite surface protein (SPAM) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:64051-64697 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~64051-64697 Viral_P18 PF04521.8 g24206.t1 - 0.065 12.6 0.1 0.078 12.4 0 1.2 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:645440-646330 Augustus predicted protein sequence Tomato scaffold876_contigs=13~645440-646330 Dsh_C PF12316.3 g66256.t1 - 0.071 13.2 1.2 0.084 12.9 0.9 1.1 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:28506-28817 Augustus predicted protein sequence Tomato scaffold2156_contigs=2~28506-28817 EBV-NA3 PF05009.7 g65433.t1 - 0.064 12.5 1.5 0.073 12.3 1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:538889-539122 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~538889-539122 DUF4551 PF15087.1 g35179.t1 - 1.1 7.5 4.5 1.1 7.5 3.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:524593-524907 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~524593-524907 Chromo PF00385.19 g77509.t1 - 0.000000023 33.5 0 0.000000049 32.5 0 1.5 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:233326-238312 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~233326-238312 zf-CCHC PF00098.18 g10836.t1 - 0.011 15.6 0.7 0.021 14.7 0.5 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:23574-23970 Augustus predicted protein sequence Tomato scaffold508_contigs=9~23574-23970 Gln-synt_C PF00120.19 g10791.t1 - 0.13 11.3 0.3 0.13 11.3 0.2 1 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:91937-92167 Augustus predicted protein sequence Tomato scaffold507_contigs=4~91937-92167 ATHILA PF03078.10 g51032.t1 - 0.0051 15.4 0 0.0058 15.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:35551-36073 Augustus predicted protein sequence Tomato scaffold1605_contigs=5~35551-36073 HTH_43 PF09904.4 g28693.t1 - 0.018 14.8 0.1 51 3.7 0 3.4 3 0 0 3 3 3 0 Winged helix-turn helix | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:58410-60079 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~58410-60079 DUF1293 PF06950.6 g1744.t1 - 0.052 13.4 0 0.06 13.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1293) | Ref_seq=scaffold214_contigs=4, transcript_loc=scaffold214_contigs=4:31081-31872 Augustus predicted protein sequence Tomato scaffold214_contigs=4~31081-31872 CCDC84 PF14968.1 g62158.t1 - 0.31 10.5 3.5 0.49 9.8 2.4 1.2 1 0 0 1 1 1 0 Coiled coil protein 84 | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:168238-169716 Augustus predicted protein sequence Tomato scaffold1984_contigs=7~168238-169716 Phage_integrase PF00589.17 g87466.t1 - 0.12 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:475-819 Augustus predicted protein sequence Tomato scaffold3123_contigs=1~475-819 ATHILA PF03078.10 g29675.t1 - 0.000000028 32.8 0 0.00000003 32.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:74016-74270 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~74016-74270 DUF869 PF05911.6 g32947.t1 - 0.00029 19.2 0.5 0.0004 18.7 0.3 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:498987-501746 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~498987-501746 RNA_pol_3_Rpc31 PF11705.3 g24541.t1 - 1.5 8.7 7.6 1.4 8.8 5.3 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold887_contigs=2, transcript_loc=scaffold887_contigs=2:2967-3194 Augustus predicted protein sequence Tomato scaffold887_contigs=2~2967-3194 WEMBL PF05701.6 g26943.t1 - 0.0053 15.2 5.7 0.0064 15 3.9 1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold963_contigs=16, transcript_loc=scaffold963_contigs=16:9319-9630 Augustus predicted protein sequence Tomato scaffold963_contigs=16~9319-9630 RVT_3 PF13456.1 g64450.t1 - 0.04 13.6 0.2 9.4 6 0 2.3 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:140336-143879 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~140336-143879 zf-AD PF07776.10 g54220.t1 - 0.16 12 0.8 0.59 10.1 0 2.1 2 0 0 2 2 2 0 Zinc-finger associated domain (zf-AD) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:58246-60588 Augustus predicted protein sequence Tomato scaffold1717_contigs=10~58246-60588 SmpB PF01668.13 g10278.t1 - 0.0078 16 0 0.01 15.5 0 1.2 1 0 0 1 1 1 1 SmpB protein | Ref_seq=scaffold493_contigs=4, transcript_loc=scaffold493_contigs=4:92811-93089 Augustus predicted protein sequence Tomato scaffold493_contigs=4~92811-93089 RMMBL PF07521.7 g60840.t1 - 0.078 12.8 0.1 0.13 12 0.1 1.4 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:513864-517643 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~513864-517643 Gly-rich_Ago1 PF12764.2 g39239.t1 - 0.18 12.4 0.7 0.32 11.6 0.5 1.3 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:10512-10898 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~10512-10898 Hpt PF01627.18 g69840.t1 - 0.025 14.5 0 0.036 14 0 1.4 1 0 0 1 1 1 0 Hpt domain | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:140133-141032 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~140133-141032 IncA PF04156.9 g44122.t1 - 0.035 13.6 8.5 0.047 13.2 5.9 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:176919-177676 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~176919-177676 Sdh_cyt PF01127.17 g84030.t1 - 0.12 12.2 0 0.17 11.7 0 1.2 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:167328-168525 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~167328-168525 rve PF00665.21 g58980.t1 - 0.0078 16.3 0 0.014 15.4 0 1.4 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:81861-82999 Augustus predicted protein sequence Tomato scaffold1886_contigs=2~81861-82999 YwhD PF08741.5 g47303.t1 - 0.013 14.9 0 0.014 14.8 0 1.1 1 0 0 1 1 1 0 YwhD family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:105722-106075 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~105722-106075 rve PF00665.21 g82965.t1 - 0.00048 20.2 0 0.00085 19.4 0 1.3 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:6469-7551 Augustus predicted protein sequence Tomato scaffold2753_contigs=11~6469-7551 Nop14 PF04147.7 g17056.t1 - 2.9 5.6 10.2 2.8 5.7 7.1 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:30161-31144 Augustus predicted protein sequence Tomato scaffold694_contigs=2~30161-31144 Orthopox_35kD PF02250.10 g8165.t1 - 0.07 12.4 0 0.11 11.8 0 1.2 1 0 0 1 1 1 0 35kD major secreted virus protein | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:205092-209208 Augustus predicted protein sequence Tomato scaffold421_contigs=12~205092-209208 Flagellar_rod PF05149.7 g76609.t1 - 0.008 15.4 0.1 0.01 15 0.1 1.1 1 0 0 1 1 1 1 Paraflagellar rod protein | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:240752-241096 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~240752-241096 PT-TG PF14449.1 g42209.t1 - 0.79 9.5 5.7 1.6 8.6 3.8 1.7 1 1 0 1 1 1 0 Pre-toxin TG | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:100194-100472 Augustus predicted protein sequence Tomato scaffold1349_contigs=8~100194-100472 DUF1347 PF07079.6 g43626.t1 - 0.015 13.5 0.1 0.017 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:174561-175046 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~174561-175046 PP_M1 PF03012.9 g69792.t1 - 0.12 11.7 0 0.12 11.7 0 1 1 0 0 1 1 1 0 Phosphoprotein | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:950204-950779 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~950204-950779 zf-CCHC PF00098.18 g25387.t1 - 0.0015 18.3 0.9 0.0023 17.7 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:105189-105536 Augustus predicted protein sequence Tomato scaffold928_contigs=4~105189-105536 DUF3285 PF11688.3 g75513.t1 - 0.062 12.9 1.5 11 5.6 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:66851-67942 Augustus predicted protein sequence Tomato scaffold2599_contigs=27~66851-67942 YpzI PF14140.1 g55388.t1 - 0.057 12.9 0.1 0.15 11.5 0.1 1.7 1 0 0 1 1 1 0 YpzI-like protein | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:32418-33324 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~32418-33324 Dimer_Tnp_hAT PF05699.9 g64210.t1 - 0.00011 21.7 0.1 0.00037 20 0 1.8 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:479591-480749 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~479591-480749 hNIFK_binding PF12196.3 g77360.t1 - 0.13 11.6 1.3 0.23 10.8 0.9 1.4 1 0 0 1 1 1 0 FHA Ki67 binding domain of hNIFK | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:125403-125723 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~125403-125723 Dishevelled PF02377.10 g36938.t1 - 0.095 12.9 0.3 0.23 11.6 0.2 1.6 1 0 0 1 1 1 0 Dishevelled specific domain | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:179521-181868 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~179521-181868 NADH-G_4Fe-4S_3 PF10588.4 g56896.t1 - 0.021 14 0.7 0.047 12.9 0.5 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:8829-9131 Augustus predicted protein sequence Tomato scaffold1822_contigs=5~8829-9131 HALZ PF02183.13 g86558.t1 - 0.01 15.5 3.3 1.1 9 0.3 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2872_contigs=1, transcript_loc=scaffold2872_contigs=1:36089-36900 Augustus predicted protein sequence Tomato scaffold2872_contigs=1~36089-36900 MOSC PF03473.12 g80763.t1 - 0.0076 15.7 0.1 0.29 10.5 0 2.4 2 0 0 2 2 2 2 MOSC domain | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:265002-265872 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~265002-265872 Bromo_TP PF07524.8 g8812.t1 - 0.077 12.7 0 18 5.1 0 2.4 2 0 0 2 2 2 0 Bromodomain associated | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:40279-41664 Augustus predicted protein sequence Tomato scaffold441_contigs=5~40279-41664 zf-CCHC PF00098.18 g26591.t1 - 0.000021 24.2 1.7 0.000049 23 1.2 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:26674-31098 Augustus predicted protein sequence Tomato scaffold954_contigs=1~26674-31098 Polyketide_cyc2 PF10604.4 g11175.t1 - 0.52 10.4 2.4 11 6.2 0.6 2 1 1 1 2 2 2 0 Polyketide cyclase / dehydrase and lipid transport | Ref_seq=scaffold518_contigs=2, transcript_loc=scaffold518_contigs=2:37956-38295 Augustus predicted protein sequence Tomato scaffold518_contigs=2~37956-38295 Pyrid_oxidase_2 PF13883.1 g66086.t1 - 0.000094 22.2 0 0.00011 22 0 1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:111141-111371 Augustus predicted protein sequence Tomato scaffold2148_contigs=3~111141-111371 CM_1 PF07736.6 g682.t1 - 0.14 12.2 0 0.19 11.8 0 1.2 1 0 0 1 1 1 0 Chorismate mutase type I | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:103729-104055 Augustus predicted protein sequence Tomato scaffold95_contigs=9~103729-104055 Selenoprotein_S PF06936.6 g21418.t1 - 0.12 11.9 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:187367-188630 Augustus predicted protein sequence Tomato scaffold798_contigs=6~187367-188630 RAM PF15320.1 g58588.t1 - 3.3 8 6.8 2.5 8.4 0.1 2.3 2 0 0 2 2 2 0 mRNA cap methylation, RNMT-activating mini protein | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:489948-491182 Augustus predicted protein sequence Tomato scaffold1864_contigs=28~489948-491182 Cut8_N PF14482.1 g34729.t1 - 0.073 13 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:152842-153066 Augustus predicted protein sequence Tomato scaffold1155_contigs=5~152842-153066 DZR PF12773.2 g10465.t1 - 0.044 13.6 0.6 0.061 13.1 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:319491-319772 Augustus predicted protein sequence Tomato scaffold498_contigs=12~319491-319772 Trypan_PARP PF05887.6 g64139.t1 - 0.0045 16.8 9.8 0.0067 16.2 6.8 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:207312-208322 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~207312-208322 RCC1 PF00415.13 g8200.t1 - 0.0051 16.9 0 2.8 8.2 0 2.3 2 0 0 2 2 2 2 Regulator of chromosome condensation (RCC1) repeat | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:359012-359461 Augustus predicted protein sequence Tomato scaffold421_contigs=12~359012-359461 DUF3987 PF13148.1 g41961.t1 - 0.24 9.9 1.7 0.25 9.8 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:32513-34047 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~32513-34047 IFT43 PF15305.1 g80638.t1 - 0.022 14.7 0.7 0.033 14.1 0.1 1.5 2 0 0 2 2 2 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:123626-123985 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~123626-123985 DUF1985 PF09331.6 g59854.t1 - 0.00000013 31.5 0 0.00000014 31.3 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:327386-328694 Augustus predicted protein sequence Tomato scaffold1936_contigs=10~327386-328694 BssS PF13991.1 g55940.t1 - 0.1 12.3 0.1 0.15 11.7 0 1.3 1 0 0 1 1 1 0 BssS protein family | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:74560-74829 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~74560-74829 DUF1985 PF09331.6 g42003.t1 - 0.061 13.1 0 0.11 12.3 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:146638-152388 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~146638-152388 IFP_35_N PF07334.8 g43958.t1 - 0.0073 16.2 2.2 0.76 9.7 0.7 3.1 2 1 1 3 3 3 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:103885-104532 Augustus predicted protein sequence Tomato scaffold1397_contigs=9~103885-104532 DUF3851 PF12962.2 g75266.t1 - 0.05 13.6 0 0.061 13.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3851) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:409-1241 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~409-1241 MHCassoc_trimer PF08831.5 g62867.t1 - 0.37 10.6 1.9 0.28 11 0.4 1.6 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:43399-43647 Augustus predicted protein sequence Tomato scaffold2012_contigs=13~43399-43647 Nop14 PF04147.7 g3594.t1 - 1.1 7.1 22.6 1.3 6.8 15.7 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:144102-144998 Augustus predicted protein sequence Tomato scaffold278_contigs=5~144102-144998 Tryp_alpha_amyl PF00234.17 g86760.t1 - 0.000000089 32.2 9.5 0.00000013 31.6 6.4 1.4 1 1 0 1 1 1 1 Protease inhibitor/seed storage/LTP family | Ref_seq=scaffold2890_contigs=1, transcript_loc=scaffold2890_contigs=1:33702-34055 Augustus predicted protein sequence Tomato scaffold2890_contigs=1~33702-34055 YdjO PF14169.1 g31872.t1 - 0.0077 15.6 0 0.014 14.8 0 1.4 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:88846-90612 Augustus predicted protein sequence Tomato scaffold1091_contigs=17~88846-90612 GDE_N_bis PF14742.1 g74500.t1 - 0.0014 18 0.1 1.6 8.1 0 2 2 0 0 2 2 2 2 N-terminal domain of (some) glycogen debranching enzymes | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:80486-81001 Augustus predicted protein sequence Tomato scaffold2555_contigs=31~80486-81001 HXXSHH PF07586.6 g13027.t1 - 0.078 11.8 0.1 0.11 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold565_contigs=2, transcript_loc=scaffold565_contigs=2:3380-7099 Augustus predicted protein sequence Tomato scaffold565_contigs=2~3380-7099 Sel1 PF08238.7 g28110.t1 - 0.012 16.2 1.6 6.3 7.5 0.1 2.4 2 0 0 2 2 2 0 Sel1 repeat | Ref_seq=scaffold991_contigs=5, transcript_loc=scaffold991_contigs=5:20237-21126 Augustus predicted protein sequence Tomato scaffold991_contigs=5~20237-21126 zf-CCHC PF00098.18 g27795.t1 - 0.000056 22.8 0.4 0.00014 21.6 0.3 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:728785-729210 Augustus predicted protein sequence Tomato scaffold983_contigs=13~728785-729210 Casc1 PF12366.3 g5872.t1 - 0.035 13.5 1.3 0.05 13 0.9 1.2 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:31882-34491 Augustus predicted protein sequence Tomato scaffold343_contigs=1~31882-34491 DmpG_comm PF07836.6 g41563.t1 - 0.059 12.7 0.9 0.48 9.8 0.6 2.1 1 1 0 1 1 1 0 DmpG-like communication domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:142108-145684 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~142108-145684 Retrotrans_gag PF03732.12 g36927.t1 - 0.019 15 0 0.03 14.4 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:153979-154362 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~153979-154362 Syntaxin_2 PF14523.1 g73532.t1 - 0.021 14.8 0.1 0.026 14.5 0 1.1 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold2483_contigs=12, transcript_loc=scaffold2483_contigs=12:89574-89891 Augustus predicted protein sequence Tomato scaffold2483_contigs=12~89574-89891 HTH_8 PF02954.14 g69928.t1 - 0.0016 17.9 0 0.81 9.2 0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:18122-18334 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~18122-18334 T4_baseplate PF12322.3 g48511.t1 - 0.1 11.8 0.1 0.13 11.5 0.1 1.1 1 0 0 1 1 1 0 T4 bacteriophage base plate protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:139924-140244 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~139924-140244 TPR_20 PF14561.1 g86411.t1 - 0.015 15.4 0.2 0.022 14.8 0.1 1.4 1 1 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold2859_contigs=1, transcript_loc=scaffold2859_contigs=1:33668-34629 Augustus predicted protein sequence Tomato scaffold2859_contigs=1~33668-34629 Tropomyosin PF00261.15 g56393.t1 - 0.014 14.5 46 0.0081 15.2 27.3 2.1 1 1 1 2 2 2 0 Tropomyosin | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:169214-170366 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~169214-170366 DUF1347 PF07079.6 g81288.t1 - 0.033 12.4 0.1 0.038 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:242095-242547 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~242095-242547 DNA_ligase_OB_2 PF14743.1 g27622.t1 - 0.074 12.7 0.1 0.18 11.4 0 1.7 2 1 0 2 2 2 0 DNA ligase OB-like domain | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:35949-36693 Augustus predicted protein sequence Tomato scaffold983_contigs=13~35949-36693 Fzo_mitofusin PF04799.8 g60110.t1 - 2.9 7.2 9 2.5 7.4 1.8 2.3 2 0 0 2 2 2 0 fzo-like conserved region | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:62394-63759 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~62394-63759 OapA_N PF08525.6 g54743.t1 - 0.013 15.2 0.3 0.03 14 0.2 1.5 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:40460-41113 Augustus predicted protein sequence Tomato scaffold1728_contigs=6~40460-41113 DUF4593 PF15263.1 g2901.t1 - 0.095 12.5 0.7 0.11 12.3 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4593) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:67651-69054 Augustus predicted protein sequence Tomato scaffold257_contigs=2~67651-69054 Myb_DNA-bind_3 PF12776.2 g58014.t1 - 0.0000016 28.6 0.5 0.0000033 27.6 0.4 1.6 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:72288-74392 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~72288-74392 MLTD_N PF06474.7 g58282.t1 - 0.043 14 3.3 8 6.7 0.2 3.2 2 0 0 2 2 2 0 MltD lipid attachment motif | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:99027-101439 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~99027-101439 Collagen_bind_2 PF12904.2 g61749.t1 - 0.12 12.1 0 0.22 11.3 0 1.5 1 0 0 1 1 1 0 Putative collagen-binding domain of a collagenase | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:18227-18793 Augustus predicted protein sequence Tomato scaffold1975_contigs=6~18227-18793 YvbH_ext PF11724.3 g15612.t1 - 0.051 13.2 0 0.074 12.7 0 1.3 1 0 0 1 1 1 0 YvbH-like oligomerisation region | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:154714-155261 Augustus predicted protein sequence Tomato scaffold635_contigs=5~154714-155261 PDR_CDR PF06422.7 g85217.t1 - 0.57 9.8 2.4 3.1 7.5 0.3 2.2 2 0 0 2 2 2 0 CDR ABC transporter | Ref_seq=scaffold2794_contigs=1, transcript_loc=scaffold2794_contigs=1:69217-71596 Augustus predicted protein sequence Tomato scaffold2794_contigs=1~69217-71596 His_kinase PF06580.8 g69905.t1 - 0.051 13.4 0.1 0.061 13.2 0 1.1 1 0 0 1 1 1 0 Histidine kinase | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:72511-72720 Augustus predicted protein sequence Tomato scaffold2312_contigs=19~72511-72720 CENP-F_C_Rb_bdg PF10490.4 g42291.t1 - 0.054 12.8 0 0.084 12.1 0 1.3 1 0 0 1 1 1 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:88458-92322 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~88458-92322 KASH PF10541.4 g84583.t1 - 4.3 7.2 6.5 0.6 10 1.7 1.7 2 0 0 2 2 2 0 Nuclear envelope localisation domain | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:127505-130095 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~127505-130095 Nop14 PF04147.7 g49590.t1 - 4.2 5.1 26.1 4 5.2 18.1 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:29984-30454 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~29984-30454 BAR_2 PF10455.4 g14688.t1 - 0.031 13.1 2.9 0.037 12.9 2 1.1 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:175155-175457 Augustus predicted protein sequence Tomato scaffold599_contigs=8~175155-175457 NESP55 PF06390.7 g40246.t1 - 0.75 9.1 3.4 0.87 8.9 1.5 1.7 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:35930-36363 Augustus predicted protein sequence Tomato scaffold1297_contigs=3~35930-36363 Sigma70_ner PF04546.8 g74021.t1 - 0.013 15.1 4.1 0.019 14.5 2.9 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:155430-160451 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~155430-160451 HALZ PF02183.13 g49617.t1 - 0.099 12.3 9.4 0.72 9.6 1.2 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:168452-169174 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~168452-169174 Trypan_PARP PF05887.6 g75352.t1 - 3.1 7.6 15.7 3.6 7.3 10.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:67908-68234 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~67908-68234 COG5 PF10392.4 g83170.t1 - 0.06 13.3 0.5 0.16 11.9 0.3 1.7 2 0 0 2 2 2 0 Golgi transport complex subunit 5 | Ref_seq=scaffold2757_contigs=5, transcript_loc=scaffold2757_contigs=5:59805-60560 Augustus predicted protein sequence Tomato scaffold2757_contigs=5~59805-60560 Fer4_21 PF14697.1 g50324.t1 - 1.5 8.7 7.1 2.3 8.1 4.9 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:61129-61780 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~61129-61780 CENP-F_leu_zip PF10473.4 g85833.t1 - 0.068 13 3.5 0.65 9.8 0.5 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:47258-48169 Augustus predicted protein sequence Tomato scaffold2823_contigs=1~47258-48169 ITI_HC_C PF06668.7 g40724.t1 - 0.078 12.3 0 0.099 12 0 1.2 1 0 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:15078-15350 Augustus predicted protein sequence Tomato scaffold1309_contigs=4~15078-15350 ATP-synt_B PF00430.13 g312.t1 - 1.9 8.2 7.6 0.13 12 1 2.3 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:167562-168517 Augustus predicted protein sequence Tomato scaffold17_contigs=4~167562-168517 DUF1580 PF07618.6 g35324.t1 - 0.11 11.8 0.3 5.4 6.4 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1580) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:38472-39387 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~38472-39387 Herpes_US12 PF05363.7 g34458.t1 - 0.011 16.1 0 0.02 15.3 0 1.5 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:3987-4523 Augustus predicted protein sequence Tomato scaffold1151_contigs=2~3987-4523 Xpo1 PF08389.7 g49906.t1 - 0.0061 16.4 0.1 0.009 15.9 0.1 1.2 1 0 0 1 1 1 1 Exportin 1-like protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:577576-578623 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~577576-578623 DUF1510 PF07423.6 g76192.t1 - 0.39 10 13.6 0.49 9.7 9.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:127025-128605 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~127025-128605 Sigma70_ner PF04546.8 g9986.t1 - 0.016 14.8 0.2 0.022 14.3 0.1 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:101310-102108 Augustus predicted protein sequence Tomato scaffold481_contigs=9~101310-102108 Cytochrom_C_2 PF01322.15 g32971.t1 - 0.1 13.1 2.3 0.16 12.4 1.6 1.4 1 0 0 1 1 1 0 Cytochrome C' | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:588783-589881 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~588783-589881 DUF724 PF05266.9 g20647.t1 - 0.0014 18.2 12.5 0.0015 18.2 8.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF724) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:114581-115072 Augustus predicted protein sequence Tomato scaffold777_contigs=4~114581-115072 Rab5ip PF07019.7 g37108.t1 - 0.37 10.9 2.2 0.59 10.3 1.5 1.5 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:295990-296716 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~295990-296716 Nop14 PF04147.7 g58913.t1 - 4.3 5.1 20.4 6.2 4.6 14.1 1.2 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:248620-250266 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~248620-250266 NESP55 PF06390.7 g21718.t1 - 0.021 14.1 1 0.021 14.1 0.7 2.1 3 0 0 3 3 3 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:310983-322817 Augustus predicted protein sequence Tomato scaffold810_contigs=11~310983-322817 Cys_rich_CPCC PF14206.1 g16386.t1 - 0.11 12 0 0.15 11.6 0 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:85143-87022 Augustus predicted protein sequence Tomato scaffold669_contigs=3~85143-87022 TilS PF09179.6 g5874.t1 - 0.23 11.4 2.2 0.35 10.9 0.3 1.9 2 0 0 2 2 2 0 TilS substrate binding domain | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:35408-35719 Augustus predicted protein sequence Tomato scaffold343_contigs=1~35408-35719 DegS PF05384.6 g28665.t1 - 0.0025 17 0.3 0.0035 16.5 0.2 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:118254-119492 Augustus predicted protein sequence Tomato scaffold1008_contigs=4~118254-119492 DUF755 PF05501.6 g3914.t1 - 4.9 7.2 12.1 43 4.1 6.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF755) | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:25461-26594 Augustus predicted protein sequence Tomato scaffold283_contigs=2~25461-26594 DUF573 PF04504.9 g59638.t1 - 0.027 14.7 0.6 0.036 14.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF573 | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:59778-60116 Augustus predicted protein sequence Tomato scaffold1928_contigs=20~59778-60116 MCC-bdg_PDZ PF10506.4 g16750.t1 - 0.031 14 0.9 0.052 13.3 0.6 1.4 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold680_contigs=7, transcript_loc=scaffold680_contigs=7:16702-20277 Augustus predicted protein sequence Tomato scaffold680_contigs=7~16702-20277 Mis14 PF08641.7 g51592.t1 - 0.069 13.2 1.5 0.098 12.7 1 1.2 1 0 0 1 1 1 0 Kinetochore protein Mis14 like | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:55186-56631 Augustus predicted protein sequence Tomato scaffold1618_contigs=6~55186-56631 UPF0561 PF10573.4 g43592.t1 - 0.98 9.2 11.4 1.1 9.1 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1388_contigs=6, transcript_loc=scaffold1388_contigs=6:84762-87519 Augustus predicted protein sequence Tomato scaffold1388_contigs=6~84762-87519 Trypan_PARP PF05887.6 g43362.t1 - 0.0016 18.2 11.9 0.0018 18.1 8.2 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:173512-174014 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~173512-174014 Myc_N PF01056.13 g69801.t1 - 0.027 13.6 4.4 0.033 13.3 3.1 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:18050-19584 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~18050-19584 MAP65_ASE1 PF03999.7 g55999.t1 - 0.68 8.4 4.3 0.89 8 3 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:250035-250676 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~250035-250676 CAF-1_p150 PF11600.3 g76410.t1 - 0.000042 23 20.4 0.000066 22.3 14.1 1.4 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:79942-82154 Augustus predicted protein sequence Tomato scaffold2625_contigs=4~79942-82154 SCP-1 PF05483.7 g30340.t1 - 0.00071 17.4 0.8 0.00085 17.2 0.5 1 1 0 0 1 1 1 1 Synaptonemal complex protein 1 (SCP-1) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:147685-148223 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~147685-148223 Molybdop_Fe4S4 PF04879.11 g46078.t1 - 0.28 11 2.1 7.4 6.4 0 2.9 2 1 1 3 3 3 0 Molybdopterin oxidoreductase Fe4S4 domain | Ref_seq=scaffold1475_contigs=1, transcript_loc=scaffold1475_contigs=1:3993-4340 Augustus predicted protein sequence Tomato scaffold1475_contigs=1~3993-4340 YrhK PF14145.1 g48742.t1 - 0.49 10.1 2.7 0.98 9.1 0.1 2.3 2 0 0 2 2 2 0 YrhK-like protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:959068-960432 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~959068-960432 MADF_DNA_bdg PF10545.4 g40527.t1 - 0.25 11.5 2.4 0.33 11.1 1.5 1.3 1 1 0 1 1 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:282893-283225 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~282893-283225 DUF2170 PF09938.4 g15698.t1 - 0.046 13 0 0.063 12.6 0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2170) | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:79861-80193 Augustus predicted protein sequence Tomato scaffold640_contigs=3~79861-80193 DUF1985 PF09331.6 g76721.t1 - 0.00000001 35 0 0.000000014 34.6 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:464777-465954 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~464777-465954 ETRAMP PF09716.5 g84945.t1 - 0.00066 19.5 0 0.0013 18.6 0 1.5 1 0 0 1 1 1 1 Malarial early transcribed membrane protein (ETRAMP) | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:68190-69779 Augustus predicted protein sequence Tomato scaffold2785_contigs=1~68190-69779 DUF1106 PF06523.6 g15441.t1 - 0.025 14.4 0 0.034 13.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1106) | Ref_seq=scaffold626_contigs=2, transcript_loc=scaffold626_contigs=2:51222-51542 Augustus predicted protein sequence Tomato scaffold626_contigs=2~51222-51542 Prp31_C PF09785.4 g36999.t1 - 0.0052 17.2 0.2 0.0065 16.8 0.2 1.1 1 0 0 1 1 1 1 Prp31 C terminal domain | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:519189-519617 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~519189-519617 RgpF PF05045.7 g26211.t1 - 0.047 12.2 0.1 0.051 12.1 0 1.1 1 0 0 1 1 1 0 Rhamnan synthesis protein F | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:165698-166099 Augustus predicted protein sequence Tomato scaffold945_contigs=10~165698-166099 DUF3893 PF13032.1 g17871.t1 - 0.079 13 0.1 0.095 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:205359-205613 Augustus predicted protein sequence Tomato scaffold715_contigs=2~205359-205613 DUF1725 PF08333.6 g57532.t1 - 0.0067 15.6 0.3 0.014 14.7 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1725) | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:48128-50131 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~48128-50131 Virulence_fact PF13769.1 g34347.t1 - 0.1 12.4 2.5 0.14 11.9 1.7 1.2 1 0 0 1 1 1 0 Virulence factor | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:125901-126324 Augustus predicted protein sequence Tomato scaffold1148_contigs=4~125901-126324 IRF-2BP1_2 PF11261.3 g82355.t1 - 0.0015 17.9 0.1 0.064 12.7 0.1 2.1 2 0 0 2 2 2 2 Interferon regulatory factor 2-binding protein zinc finger | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:313014-314649 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~313014-314649 DUF1464 PF07318.7 g2094.t1 - 0.05 12.4 0 0.05 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) | Ref_seq=scaffold226_contigs=4, transcript_loc=scaffold226_contigs=4:36379-36813 Augustus predicted protein sequence Tomato scaffold226_contigs=4~36379-36813 TMEM219 PF14940.1 g67930.t1 - 0.015 14.4 0 0.02 14 0 1.1 1 0 0 1 1 1 0 Transmembrane 219 | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:267728-270396 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~267728-270396 Sorting_nexin PF03700.8 g48418.t1 - 0.065 13.3 0.7 0.079 13 0.5 1.1 1 0 0 1 1 1 0 Sorting nexin, N-terminal domain | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:24870-25169 Augustus predicted protein sequence Tomato scaffold1504_contigs=10~24870-25169 zf-CCHC PF00098.18 g46901.t1 - 0.000078 22.4 0.7 0.00016 21.4 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:611566-612771 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~611566-612771 Histone_HNS PF00816.16 g45117.t1 - 0.14 12.6 4 0.3 11.6 2.7 1.5 1 0 0 1 1 1 0 H-NS histone family | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:29503-32940 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~29503-32940 DUF1939 PF09154.5 g53697.t1 - 0.02 14.7 0.1 0.032 14.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:64473-64697 Augustus predicted protein sequence Tomato scaffold1701_contigs=25~64473-64697 RVT_3 PF13456.1 g16.t1 - 0.02 14.6 0 0.032 13.9 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:75233-77369 Augustus predicted protein sequence Tomato scaffold1_contigs=5~75233-77369 DUF612 PF04747.7 g30513.t1 - 0.005 15.7 7.6 0.006 15.5 5.2 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF612 | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:102604-103328 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~102604-103328 DNA_pol3_a_NII PF11490.3 g51646.t1 - 0.08 12.5 5.2 0.14 11.7 3.6 1.4 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus II | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:4465-4959 Augustus predicted protein sequence Tomato scaffold1620_contigs=20~4465-4959 DUF4201 PF13870.1 g68000.t1 - 0.024 14 0.9 0.031 13.7 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:61854-63656 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~61854-63656 IncA PF04156.9 g66970.t1 - 1.1 8.7 11.1 2.7 7.5 7.5 1.6 1 1 0 1 1 1 0 IncA protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:300114-301533 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~300114-301533 YjcZ PF13990.1 g85978.t1 - 0.021 13.9 2.8 0.025 13.7 1.9 1.1 1 0 0 1 1 1 0 YjcZ-like protein | Ref_seq=scaffold2830_contigs=1, transcript_loc=scaffold2830_contigs=1:52697-53796 Augustus predicted protein sequence Tomato scaffold2830_contigs=1~52697-53796 zf-CCHC PF00098.18 g4428.t1 - 0.0028 17.5 0.1 0.0052 16.6 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:97032-97715 Augustus predicted protein sequence Tomato scaffold300_contigs=5~97032-97715 VGCC_beta4Aa_N PF12052.3 g45505.t1 - 0.16 11.8 3.8 0.26 11.2 2.6 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:44589-46952 Augustus predicted protein sequence Tomato scaffold1448_contigs=3~44589-46952 TMEM220 PF15071.1 g71845.t1 - 0.05 14 0.2 5.2 7.5 0.1 2.1 2 0 0 2 2 2 0 Transmembrane family 220, helix | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:47529-51226 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~47529-51226 DUF2828 PF11443.3 g36039.t1 - 0.32 9.1 2.7 0.39 8.8 1.8 1 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:163538-164255 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~163538-164255 DUF4201 PF13870.1 g76983.t1 - 0.0083 15.5 7.4 0.04 13.3 2.7 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:348700-349305 Augustus predicted protein sequence Tomato scaffold2643_contigs=16~348700-349305 GH-E PF14410.1 g29894.t1 - 0.072 13.2 0 0.08 13 0 1.2 1 1 0 1 1 1 0 HNH/ENDO VII superfamily nuclease with conserved GHE residues | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:205230-205883 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~205230-205883 DUF4283 PF14111.1 g58485.t1 - 0.024 13.7 0.1 0.038 13 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:169701-170170 Augustus predicted protein sequence Tomato scaffold1863_contigs=15~169701-170170 DUF4337 PF14235.1 g46107.t1 - 1.4 8.6 5.4 1.9 8.3 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:71729-72103 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~71729-72103 CENP-Q PF13094.1 g49286.t1 - 0.0061 16.5 12.3 0.0061 16.5 8.6 2.8 1 1 1 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:8207-17050 Augustus predicted protein sequence Tomato scaffold1532_contigs=5~8207-17050 DUF1676 PF07898.8 g23910.t1 - 0.02 15.1 0.6 0.038 14.2 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:89302-90192 Augustus predicted protein sequence Tomato scaffold874_contigs=5~89302-90192 zf-RING_2 PF13639.1 g3304.t1 - 0.11 12.3 0.3 0.24 11.2 0.2 1.6 1 0 0 1 1 1 0 Ring finger domain | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:155723-156034 Augustus predicted protein sequence Tomato scaffold266_contigs=2~155723-156034 DUF4224 PF13986.1 g72993.t1 - 0.00075 18.9 0 1.6 8.3 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4224) | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:1323513-1327032 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~1323513-1327032 AAA_22 PF13401.1 g31380.t1 - 0.12 12.5 0 0.2 11.7 0 1.4 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:92142-94460 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~92142-94460 COPIIcoated_ERV PF07970.7 g8340.t1 - 0.021 14.4 1.5 0.026 14.1 1 1 1 0 0 1 1 1 0 Endoplasmic reticulum vesicle transporter | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:422343-422729 Augustus predicted protein sequence Tomato scaffold423_contigs=9~422343-422729 zf-CCHC PF00098.18 g78242.t1 - 0.000025 23.9 2.4 0.000053 22.9 1.7 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:627245-627724 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~627245-627724 HD_3 PF13023.1 g55466.t1 - 0.058 13.1 0.2 0.078 12.7 0.1 1.2 1 0 0 1 1 1 0 HD domain | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:299132-300638 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~299132-300638 zf-CCHC PF00098.18 g10794.t1 - 0.000088 22.2 1 0.00023 20.9 0.7 1.8 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:98602-99354 Augustus predicted protein sequence Tomato scaffold507_contigs=4~98602-99354 Retrotrans_gag PF03732.12 g1202.t1 - 0.016 15.2 0 0.14 12.2 0 2.2 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:147709-150343 Augustus predicted protein sequence Tomato scaffold193_contigs=2~147709-150343 DUF4337 PF14235.1 g19148.t1 - 0.11 12.3 0.2 0.13 12 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:72036-72383 Augustus predicted protein sequence Tomato scaffold746_contigs=6~72036-72383 RVT_3 PF13456.1 g55444.t1 - 0.00094 18.9 0.2 0.0029 17.3 0.1 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:221085-221456 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~221085-221456 MRP-L46 PF11788.3 g73858.t1 - 0.052 14.1 0.5 0.057 14 0.3 1.1 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 | Ref_seq=scaffold2511_contigs=22, transcript_loc=scaffold2511_contigs=22:170996-171310 Augustus predicted protein sequence Tomato scaffold2511_contigs=22~170996-171310 DUF4512 PF14975.1 g63853.t1 - 0.16 12.7 0.4 0.23 12.3 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4512) | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:21975-22382 Augustus predicted protein sequence Tomato scaffold2045_contigs=9~21975-22382 Serum_albumin PF00273.15 g54151.t1 - 0.12 11.8 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Serum albumin family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:133220-135242 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~133220-135242 RXT2_N PF08595.6 g8.t1 - 0.69 9.6 5.1 1.7 8.3 3.5 1.6 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:44740-45744 Augustus predicted protein sequence Tomato scaffold1_contigs=5~44740-45744 GTP_cyclohydro2 PF00925.15 g72466.t1 - 0.069 12.3 0 0.084 12.1 0 1.1 1 0 0 1 1 1 0 GTP cyclohydrolase II | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:177350-177598 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~177350-177598 COG6 PF06419.6 g41530.t1 - 0.045 11.8 0 0.049 11.7 0 1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:22129-22434 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~22129-22434 TORC_N PF12884.2 g60055.t1 - 0.074 13.5 0 0.21 12.1 0 1.8 1 0 0 1 1 1 0 Transducer of regulated CREB activity, N terminus | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:145024-145902 Augustus predicted protein sequence Tomato scaffold1939_contigs=7~145024-145902 HTH_5 PF01022.15 g76548.t1 - 0.00081 19 0.2 0.0015 18.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:4623-4991 Augustus predicted protein sequence Tomato scaffold2636_contigs=10~4623-4991 DUF812 PF05667.6 g28523.t1 - 0.08 11.4 11.2 0.085 11.3 7.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:247852-248331 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~247852-248331 UPF0542 PF15086.1 g20160.t1 - 0.018 14.7 0.1 0.05 13.3 0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0542 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:105764-106267 Augustus predicted protein sequence Tomato scaffold768_contigs=4~105764-106267 RVT_3 PF13456.1 g52176.t1 - 0.038 13.7 0.1 0.038 13.7 0.1 1.2 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:317460-317693 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~317460-317693 DUF4407 PF14362.1 g84719.t1 - 0.039 12.9 0.2 0.042 12.8 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:34646-34963 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~34646-34963 Toprim_Crpt PF13342.1 g52193.t1 - 0.036 13.7 0.2 0.13 11.8 0.1 1.9 2 0 0 2 2 2 0 C-terminal repeat of topoisomerase | Ref_seq=scaffold1632_contigs=6, transcript_loc=scaffold1632_contigs=6:47153-47440 Augustus predicted protein sequence Tomato scaffold1632_contigs=6~47153-47440 OAD_gamma PF04277.8 g3701.t1 - 0.25 11.7 1 0.48 10.8 0.7 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:208061-208846 Augustus predicted protein sequence Tomato scaffold280_contigs=12~208061-208846 FliD_N PF02465.13 g85798.t1 - 0.098 13 1.9 0.14 12.4 1.3 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus | Ref_seq=scaffold2819_contigs=1, transcript_loc=scaffold2819_contigs=1:51046-51429 Augustus predicted protein sequence Tomato scaffold2819_contigs=1~51046-51429 Tnp_DNA_bind PF14706.1 g76921.t1 - 0.033 13.9 1.6 6.4 6.5 0 2.7 3 0 0 3 3 3 0 Transposase DNA-binding | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:30947-31828 Augustus predicted protein sequence Tomato scaffold2642_contigs=12~30947-31828 Peroxin-13_N PF04088.8 g29551.t1 - 0.0063 16.4 1.6 0.0063 16.4 1.1 2 1 1 1 2 2 2 1 Peroxin 13, N-terminal region | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:31871-32185 Augustus predicted protein sequence Tomato scaffold1029_contigs=5~31871-32185 DUF1183 PF06682.7 g63414.t1 - 0.087 12.4 0.1 0.093 12.3 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:207849-208121 Augustus predicted protein sequence Tomato scaffold2035_contigs=8~207849-208121 DUF2806 PF10987.3 g82978.t1 - 0.16 11.4 0 0.21 11 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2806) | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:51940-52329 Augustus predicted protein sequence Tomato scaffold2753_contigs=11~51940-52329 Ribosomal_TL5_C PF14693.1 g31770.t1 - 0.066 13.4 0 0.073 13.2 0 1.2 1 0 0 1 1 1 0 Ribosomal protein TL5, C-terminal domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:56614-56850 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~56614-56850 PsbP PF01789.11 g20327.t1 - 0.035 13.5 0 0.055 12.9 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:48605-49552 Augustus predicted protein sequence Tomato scaffold773_contigs=6~48605-49552 TMF_DNA_bd PF12329.3 g42141.t1 - 0.054 13.3 2.4 0.081 12.7 1.7 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:144889-146439 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~144889-146439 zf-CCHC PF00098.18 g40247.t1 - 0.0032 17.3 0.9 0.0073 16.1 0.6 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:37041-38246 Augustus predicted protein sequence Tomato scaffold1297_contigs=3~37041-38246 Myosin_tail_1 PF01576.14 g52475.t1 - 0.035 11.8 2.1 0.049 11.3 1.5 1.2 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:134948-138634 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~134948-138634 ATHILA PF03078.10 g63205.t1 - 0.011 14.3 0 0.023 13.2 0 1.5 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:15345-16176 Augustus predicted protein sequence Tomato scaffold2032_contigs=5~15345-16176 Endonuc_Holl PF10107.4 g67898.t1 - 0.05 13.2 0.2 0.065 12.9 0.1 1.2 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:182016-182789 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~182016-182789 rve PF00665.21 g57743.t1 - 0.002 18.2 0.1 0.0049 16.9 0 1.6 2 0 0 2 2 2 1 Integrase core domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:502667-503793 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~502667-503793 Gly-rich_Ago1 PF12764.2 g8517.t1 - 4 8.1 7 1.3 9.7 1.3 2.3 2 1 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:94307-94801 Augustus predicted protein sequence Tomato scaffold428_contigs=8~94307-94801 DUF1762 PF08574.5 g55779.t1 - 1.9 8.9 9.4 0.35 11.3 3.5 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1762) | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:54635-56747 Augustus predicted protein sequence Tomato scaffold1773_contigs=11~54635-56747 FYDLN_acid PF09538.5 g33716.t1 - 0.011 16.2 16.1 0.012 16.1 11.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:105822-109875 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~105822-109875 SVA PF05326.6 g3601.t1 - 0.042 13.6 0 0.071 12.8 0 1.3 1 0 0 1 1 1 0 Seminal vesicle autoantigen (SVA) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:154288-155310 Augustus predicted protein sequence Tomato scaffold278_contigs=5~154288-155310 FH2 PF02181.18 g31544.t1 - 0.048 12.5 0.1 0.094 11.5 0 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:153114-153842 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~153114-153842 DUF2215 PF10225.4 g1426.t1 - 0.0044 16.5 1.6 0.011 15.1 1.1 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:33494-35423 Augustus predicted protein sequence Tomato scaffold202_contigs=3~33494-35423 HeLo PF14479.1 g50135.t1 - 0.055 13.1 4.4 0.085 12.5 3 1.3 1 0 0 1 1 1 0 Prion-inhibition and propagation | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:387174-388108 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~387174-388108 DUF4533 PF15047.1 g13558.t1 - 0.07 12.5 0.2 0.079 12.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4533) | Ref_seq=scaffold577_contigs=2, transcript_loc=scaffold577_contigs=2:44785-45063 Augustus predicted protein sequence Tomato scaffold577_contigs=2~44785-45063 RE_SacI PF09566.5 g3371.t1 - 0.015 14.2 0.9 0.018 13.9 0.6 1 1 0 0 1 1 1 0 SacI restriction endonuclease | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:177875-178348 Augustus predicted protein sequence Tomato scaffold270_contigs=10~177875-178348 Oxidored_q2 PF00420.19 g27900.t1 - 0.18 11.4 1.8 0.31 10.6 1.3 1.4 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:45469-47425 Augustus predicted protein sequence Tomato scaffold987_contigs=6~45469-47425 DUF2238 PF09997.4 g4092.t1 - 0.014 14.8 0.1 6.1 6.2 0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:34496-35972 Augustus predicted protein sequence Tomato scaffold291_contigs=11~34496-35972 BCDHK_Adom3 PF10436.4 g28095.t1 - 0.068 12.6 0.3 0.084 12.3 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:356556-359325 Augustus predicted protein sequence Tomato scaffold990_contigs=6~356556-359325 VGCC_beta4Aa_N PF12052.3 g26713.t1 - 0.024 14.4 0.2 0.048 13.5 0.1 1.6 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:59348-60197 Augustus predicted protein sequence Tomato scaffold958_contigs=5~59348-60197 zf-BED PF02892.10 g68023.t1 - 0.0059 16.3 1.5 0.011 15.5 1 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:169652-169975 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~169652-169975 EF-hand_like PF09279.6 g56517.t1 - 0.09 12.8 1.8 0.17 11.9 1.2 1.5 1 1 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:77199-77504 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~77199-77504 zf-C4H2 PF10146.4 g15909.t1 - 0.02 14.8 1.4 0.022 14.7 1 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:124230-124905 Augustus predicted protein sequence Tomato scaffold651_contigs=13~124230-124905 DUF2890 PF11081.3 g75983.t1 - 0.84 9.6 4.3 1.5 8.8 3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:201427-202071 Augustus predicted protein sequence Tomato scaffold2615_contigs=8~201427-202071 Mito_fiss_reg PF05308.6 g12471.t1 - 0.0061 15.9 1.8 0.007 15.7 1.2 1 1 0 0 1 1 1 1 Mitochondrial fission regulator | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:67676-67987 Augustus predicted protein sequence Tomato scaffold555_contigs=3~67676-67987 CITED PF04487.7 g82603.t1 - 0.027 14.6 0.1 0.029 14.6 0.1 1.1 1 0 0 1 1 1 0 CITED | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:195322-195600 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~195322-195600 PurS PF02700.9 g80642.t1 - 0.036 14 0.4 0.058 13.3 0.3 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:131477-131827 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~131477-131827 WEMBL PF05701.6 g85684.t1 - 0.000025 22.9 1.2 0.000029 22.7 0.8 1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:45852-46229 Augustus predicted protein sequence Tomato scaffold2814_contigs=1~45852-46229 Choline_kinase PF01633.15 g77658.t1 - 0.016 14.8 0.1 0.022 14.3 0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:345170-345571 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~345170-345571 Chal_sti_synt_N PF00195.14 g42801.t1 - 0.079 12.1 0 0.09 12 0 1.1 1 0 0 1 1 1 0 Chalcone and stilbene synthases, N-terminal domain | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:53301-53700 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~53301-53700 Pkinase PF00069.20 g62282.t1 - 0.00031 20 0 0.0067 15.6 0 2.3 1 1 1 2 2 2 1 Protein kinase domain | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:394247-395543 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~394247-395543 Lipase_GDSL_3 PF14606.1 g73600.t1 - 0.13 11.9 0 1.7 8.3 0 2 1 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:213297-213611 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~213297-213611 EHN PF06441.7 g27518.t1 - 0.098 12.5 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 Epoxide hydrolase N terminus | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:395971-396350 Augustus predicted protein sequence Tomato scaffold980_contigs=13~395971-396350 Baculo_gp64 PF03273.8 g64221.t1 - 0.0077 14.4 2.4 0.76 7.8 0.1 2.1 1 1 1 2 2 2 2 Baculovirus gp64 envelope glycoprotein family | Ref_seq=scaffold2056_contigs=12, transcript_loc=scaffold2056_contigs=12:1-5470 Augustus predicted protein sequence Tomato scaffold2056_contigs=12~1-5470 zf-CCHC PF00098.18 g45121.t1 - 0.00056 19.7 2.9 0.00056 19.7 2 2.1 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:58791-60484 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~58791-60484 Prp19_bind PF06991.6 g60185.t1 - 2.3 7.4 6.1 3.1 7 4.3 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:262071-262601 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~262071-262601 DUF573 PF04504.9 g14929.t1 - 0.29 11.4 5.3 0.87 9.8 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function, DUF573 | Ref_seq=scaffold613_contigs=1, transcript_loc=scaffold613_contigs=1:21350-21760 Augustus predicted protein sequence Tomato scaffold613_contigs=1~21350-21760 Arabinose_trans PF04602.7 g19975.t1 - 0.026 12.7 0 0.031 12.4 0 1 1 0 0 1 1 1 0 Mycobacterial cell wall arabinan synthesis protein | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:64241-64633 Augustus predicted protein sequence Tomato scaffold765_contigs=9~64241-64633 DUF4542 PF15075.1 g21276.t1 - 0.13 12.1 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4542) | Ref_seq=scaffold796_contigs=1, transcript_loc=scaffold796_contigs=1:22365-22867 Augustus predicted protein sequence Tomato scaffold796_contigs=1~22365-22867 ATHILA PF03078.10 g57347.t1 - 0.000000034 32.5 0 0.000000036 32.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:282644-282955 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~282644-282955 BPL_LplA_LipB PF03099.14 g5756.t1 - 0.0046 16.9 0 0.4 10.7 0 2.5 2 1 0 2 2 2 2 Biotin/lipoate A/B protein ligase family | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:81247-81852 Augustus predicted protein sequence Tomato scaffold338_contigs=10~81247-81852 DUF2656 PF10847.3 g83664.t1 - 0.013 15.4 0.4 0.017 15 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2656) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1334882-1335548 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1334882-1335548 ING PF12998.2 g83322.t1 - 0.0023 18.1 2.2 0.016 15.4 0.2 2.2 2 0 0 2 2 2 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:65780-66672 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~65780-66672 SAB PF04382.8 g67474.t1 - 0.09 12.4 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 SAB domain | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:4699-8290 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~4699-8290 bZIP_1 PF00170.16 g13743.t1 - 0.6 10.1 4.4 3.3 7.7 0.5 2.7 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:11314-12120 Augustus predicted protein sequence Tomato scaffold582_contigs=8~11314-12120 Peptidase_C9 PF01707.11 g49166.t1 - 0.088 12.4 0 0.11 12 0 1.2 1 0 0 1 1 1 0 Peptidase family C9 | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:67305-68104 Augustus predicted protein sequence Tomato scaffold1528_contigs=14~67305-68104 DUF4201 PF13870.1 g23968.t1 - 0.027 13.9 8.4 0.037 13.4 5.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:278070-278447 Augustus predicted protein sequence Tomato scaffold874_contigs=5~278070-278447 CybS PF05328.7 g39563.t1 - 0.14 11.7 0 0.19 11.3 0 1.1 1 0 0 1 1 1 0 CybS | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:286931-287857 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~286931-287857 ATG_C PF09333.6 g45041.t1 - 0.18 11.9 1.6 1.1 9.5 1.1 2 1 1 0 1 1 1 0 ATG C terminal domain | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:656034-658923 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~656034-658923 INT_SG_DDX_CT_C PF15300.1 g76677.t1 - 0.049 13 0 0.098 12.1 0 1.4 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:295954-298823 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~295954-298823 Ricin_B_lectin PF00652.17 g85378.t1 - 0.057 13.4 0.1 0.066 13.2 0 1.1 1 0 0 1 1 1 0 Ricin-type beta-trefoil lectin domain | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:16985-18387 Augustus predicted protein sequence Tomato scaffold2802_contigs=1~16985-18387 TFIID_90kDa PF04494.10 g80620.t1 - 0.008 16.2 0.2 0.014 15.4 0.2 1.3 1 0 0 1 1 1 1 WD40 associated region in TFIID subunit | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:33807-36164 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~33807-36164 DUF3359 PF11839.3 g1227.t1 - 1 9.7 6.2 4.9 7.5 4.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3359) | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:70680-70967 Augustus predicted protein sequence Tomato scaffold194_contigs=2~70680-70967 DUF4201 PF13870.1 g43635.t1 - 0.0038 16.6 7.7 0.058 12.8 1.9 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:203348-203965 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~203348-203965 Med2 PF11214.3 g59707.t1 - 0.34 10.9 2.7 0.57 10.2 1.9 1.2 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:67536-68237 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~67536-68237 ATHILA PF03078.10 g6703.t1 - 2E-012 46.4 0 0.000024 23.1 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:341376-342447 Augustus predicted protein sequence Tomato scaffold380_contigs=11~341376-342447 UBN2 PF14223.1 g80860.t1 - 0.13 12 0 0.25 11.1 0 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:108821-110370 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~108821-110370 CDC45 PF02724.9 g7640.t1 - 0.46 8.4 13 0.52 8.2 9 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:23285-25188 Augustus predicted protein sequence Tomato scaffold405_contigs=10~23285-25188 Toprim_C_rpt PF13368.1 g50428.t1 - 0.59 10.6 4 5.5 7.5 1.3 2.6 1 1 2 3 3 3 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:132776-133015 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~132776-133015 DUF2856 PF11043.3 g54547.t1 - 0.12 12.4 0.2 0.23 11.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2856) | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:214076-214405 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~214076-214405 CMV_1a PF12467.3 g6261.t1 - 1.9 8.8 8.1 2.1 8.6 5.6 1 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:59818-60710 Augustus predicted protein sequence Tomato scaffold357_contigs=6~59818-60710 zf-BED PF02892.10 g8751.t1 - 0.0073 16 2.5 0.016 14.9 1.8 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:99518-100081 Augustus predicted protein sequence Tomato scaffold434_contigs=1~99518-100081 Ribosomal_L15e PF00827.12 g67263.t1 - 0.0017 17.8 0.7 0.0027 17.2 0.5 1.3 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2178_contigs=4, transcript_loc=scaffold2178_contigs=4:25001-30005 Augustus predicted protein sequence Tomato scaffold2178_contigs=4~25001-30005 TmoB PF06234.7 g8912.t1 - 0.013 15.3 0.3 0.027 14.3 0.2 1.6 1 0 0 1 1 1 0 Toluene-4-monooxygenase system protein B (TmoB) | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:272441-274817 Augustus predicted protein sequence Tomato scaffold442_contigs=14~272441-274817 ATHILA PF03078.10 g20259.t1 - 0.004 15.8 0 0.004 15.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:496583-496876 Augustus predicted protein sequence Tomato scaffold768_contigs=4~496583-496876 MCR_gamma PF02240.11 g65348.t1 - 0.019 14.1 0 0.022 13.9 0 1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:209649-209936 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~209649-209936 DUF4286 PF14114.1 g36214.t1 - 0.081 13.2 0.3 0.42 10.9 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:208179-208754 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~208179-208754 Methyltransf_9 PF08003.6 g12913.t1 - 0.1 11.2 0 0.11 11.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:342552-343327 Augustus predicted protein sequence Tomato scaffold561_contigs=10~342552-343327 Trehalase PF01204.13 g83686.t1 - 0.098 11.2 4.2 0.1 11.2 2.9 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1407905-1408255 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1407905-1408255 POM121 PF15229.1 g19713.t1 - 0.071 12.5 7.7 0.087 12.2 5.3 1.2 1 0 0 1 1 1 0 POM121 family | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:203185-203454 Augustus predicted protein sequence Tomato scaffold757_contigs=4~203185-203454 Transposase_28 PF04195.7 g52089.t1 - 0.094 12 0 0.21 10.8 0 1.5 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:8186-11115 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~8186-11115 BATS PF06968.8 g87577.t1 - 0.15 11.9 0.5 4.4 7.2 0 2.2 2 0 0 2 2 2 0 Biotin and Thiamin Synthesis associated domain | Ref_seq=scaffold3334_contigs=1, transcript_loc=scaffold3334_contigs=1:1-639 Augustus predicted protein sequence Tomato scaffold3334_contigs=1~1-639 VGCC_beta4Aa_N PF12052.3 g37617.t1 - 0.069 13 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1224_contigs=4, transcript_loc=scaffold1224_contigs=4:10234-10596 Augustus predicted protein sequence Tomato scaffold1224_contigs=4~10234-10596 ATG16 PF08614.6 g56379.t1 - 0.027 14.2 0.1 0.03 14.1 0.1 1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:126226-126480 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~126226-126480 DUF4283 PF14111.1 g27374.t1 - 0.0044 16.1 0 0.0046 16 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:28377-28610 Augustus predicted protein sequence Tomato scaffold976_contigs=1~28377-28610 BetaGal_dom2 PF10435.4 g71168.t1 - 0.022 14.1 0.9 0.023 14 0.6 1 1 0 0 1 1 1 0 Beta-galactosidase, domain 2 | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:59358-59570 Augustus predicted protein sequence Tomato scaffold2357_contigs=7~59358-59570 Fer4_17 PF13534.1 g38596.t1 - 0.0063 16.8 0.2 0.0092 16.3 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:2529-3044 Augustus predicted protein sequence Tomato scaffold1248_contigs=3~2529-3044 Phage-A118_gp45 PF10653.4 g28766.t1 - 0.14 12 0.1 0.25 11.2 0 1.4 1 0 0 1 1 1 0 Protein gp45 of Bacteriophage A118 | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:222074-222346 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~222074-222346 Anophelin PF10731.4 g29983.t1 - 0.19 11.8 0.6 0.97 9.5 0.1 1.9 2 0 0 2 2 2 0 Thrombin inhibitor from mosquito | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:57756-57956 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~57756-57956 Adeno_E1B_55K_N PF04623.7 g1769.t1 - 0.12 12.9 0.9 0.46 11 0 2 2 0 0 2 2 2 0 Adenovirus E1B protein N-terminus | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:70072-70525 Augustus predicted protein sequence Tomato scaffold215_contigs=2~70072-70525 F420_oxidored PF03807.12 g48227.t1 - 0.066 13.6 0 1.2 9.5 0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:46762-47574 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~46762-47574 APG17 PF04108.7 g54378.t1 - 0.014 14.2 1.1 0.016 13.9 0.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:182148-182573 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~182148-182573 ADIP PF11559.3 g9170.t1 - 0.0023 17.8 0 0.0026 17.6 0 1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:171581-171856 Augustus predicted protein sequence Tomato scaffold448_contigs=2~171581-171856 TT_ORF2 PF02957.10 g3697.t1 - 0.14 12.8 1.2 0.17 12.5 0.4 1.4 2 0 0 2 2 2 0 TT viral ORF2 | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:197607-198028 Augustus predicted protein sequence Tomato scaffold280_contigs=12~197607-198028 DUF4390 PF14334.1 g36255.t1 - 0.061 12.5 0 0.082 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4390) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:93277-93570 Augustus predicted protein sequence Tomato scaffold1189_contigs=6~93277-93570 MDMPI_C PF07398.6 g83900.t1 - 0.34 11.5 6.3 0.52 10.9 0.3 2.2 2 0 0 2 2 2 0 MDMPI C-terminal domain | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:46266-46757 Augustus predicted protein sequence Tomato scaffold2762_contigs=5~46266-46757 Leu_zip PF15294.1 g23408.t1 - 0.0078 15.3 1.4 0.0078 15.3 1 2.2 2 0 0 2 2 2 1 Leucine zipper | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:107686-111493 Augustus predicted protein sequence Tomato scaffold859_contigs=6~107686-111493 Red1 PF07964.6 g11189.t1 - 0.71 7.9 6.8 0.87 7.6 4.7 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:27290-27985 Augustus predicted protein sequence Tomato scaffold519_contigs=1~27290-27985 MIP-T3 PF10243.4 g54355.t1 - 0.098 11.1 1.2 0.11 11 0.8 1.2 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:95214-95606 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~95214-95606 Vitelline_membr PF10542.4 g43261.t1 - 0.91 9.1 4.1 0.2 11.2 0.5 1.6 2 0 0 2 2 2 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:281278-281631 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~281278-281631 DUF605 PF04652.11 g27998.t1 - 2.5 7.3 5.1 2.7 7.2 3.6 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:277325-277969 Augustus predicted protein sequence Tomato scaffold989_contigs=10~277325-277969 EBV-NA3 PF05009.7 g60352.t1 - 0.3 10.3 2 0.32 10.2 1.4 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:101603-101830 Augustus predicted protein sequence Tomato scaffold1949_contigs=5~101603-101830 DUF3736 PF12540.3 g5624.t1 - 0.07 13.3 2.7 0.09 13 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3736) | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:174100-174441 Augustus predicted protein sequence Tomato scaffold334_contigs=13~174100-174441 CCDC32 PF14989.1 g15774.t1 - 0.02 14.7 1.6 1.6 8.5 1.1 2.1 1 1 0 1 1 1 0 Coiled-coil domain containing 32 | Ref_seq=scaffold642_contigs=2, transcript_loc=scaffold642_contigs=2:38973-39428 Augustus predicted protein sequence Tomato scaffold642_contigs=2~38973-39428 WRC PF08879.5 g14194.t1 - 0.26 10.9 2.3 1.3 8.7 1.6 2.1 1 1 0 1 1 1 0 WRC | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:291392-291715 Augustus predicted protein sequence Tomato scaffold586_contigs=6~291392-291715 SLD3 PF08639.5 g10855.t1 - 0.14 10.8 5.9 0.16 10.5 4.1 1.1 1 0 0 1 1 1 0 DNA replication regulator SLD3 | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:116378-119059 Augustus predicted protein sequence Tomato scaffold508_contigs=9~116378-119059 Archaeal_AmoA PF12942.2 g40546.t1 - 0.13 12 0 0.24 11.1 0 1.4 1 0 0 1 1 1 0 Archaeal ammonia monooxygenase subunit A (AmoA) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:47834-50456 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~47834-50456 zf-BED PF02892.10 g8561.t1 - 0.33 10.7 2 0.76 9.5 1.4 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:298585-299121 Augustus predicted protein sequence Tomato scaffold428_contigs=8~298585-299121 zf-C4H2 PF10146.4 g59924.t1 - 2.4 8 7.4 5.9 6.8 0.6 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:313182-313817 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~313182-313817 Oxidored_q1_C PF01010.14 g15017.t1 - 0.048 13.1 0.5 0.062 12.8 0.3 1.1 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:92735-93220 Augustus predicted protein sequence Tomato scaffold616_contigs=8~92735-93220 EF-hand_like PF09279.6 g68828.t1 - 0.0091 16 0.8 0.017 15.1 0.6 1.6 1 1 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:67895-68335 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~67895-68335 DUF4229 PF14012.1 g29158.t1 - 0.091 12.6 1.4 0.55 10.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:209366-210679 Augustus predicted protein sequence Tomato scaffold1013_contigs=9~209366-210679 DUF1347 PF07079.6 g45856.t1 - 0.0089 14.2 0 0.0091 14.2 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:18373-18657 Augustus predicted protein sequence Tomato scaffold1466_contigs=3~18373-18657 ATHILA PF03078.10 g81626.t1 - 9.4E-009 34.3 0.2 9.4E-009 34.3 0.1 1.6 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:310196-311833 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~310196-311833 DapH_N PF08503.5 g10815.t1 - 0.13 12.3 0 0.22 11.6 0 1.3 1 0 0 1 1 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:205717-208904 Augustus predicted protein sequence Tomato scaffold507_contigs=4~205717-208904 TPR_MLP1_2 PF07926.7 g33018.t1 - 0.00007 22.5 3.5 0.00007 22.5 2.4 2.2 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:39070-40211 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~39070-40211 C1_1 PF00130.17 g8101.t1 - 0.00041 20 4.4 0.00059 19.5 3.1 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold418_contigs=5, transcript_loc=scaffold418_contigs=5:60795-61001 Augustus predicted protein sequence Tomato scaffold418_contigs=5~60795-61001 DBD_Tnp_Mut PF03108.10 g47768.t1 - 0.000000007 35.1 0.2 8.9E-009 34.8 0.2 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1498_contigs=4, transcript_loc=scaffold1498_contigs=4:96059-96403 Augustus predicted protein sequence Tomato scaffold1498_contigs=4~96059-96403 Apt1 PF10351.4 g40018.t1 - 0.24 10.2 5.8 0.24 10.2 0.1 2.5 2 1 0 2 2 2 0 Golgi-body localisation protein domain | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:147376-149707 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~147376-149707 Macoilin PF09726.4 g67831.t1 - 0.86 7.8 6.2 1.2 7.3 4.3 1.1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:136584-143236 Augustus predicted protein sequence Tomato scaffold2197_contigs=7~136584-143236 MHCassoc_trimer PF08831.5 g30746.t1 - 0.28 11 4.9 0.15 11.9 0.6 2.2 2 1 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:205283-205594 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~205283-205594 DNAP_B_exo_N PF08452.5 g74218.t1 - 1.4 8.2 5.9 7 6 0.2 3.2 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold2525_contigs=17, transcript_loc=scaffold2525_contigs=17:119967-120785 Augustus predicted protein sequence Tomato scaffold2525_contigs=17~119967-120785 DUF3812 PF12757.2 g76850.t1 - 0.098 12.6 1.2 0.13 12.2 0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3812) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:97787-98665 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~97787-98665 Arena_glycoprot PF00798.13 g17107.t1 - 0.0096 14.3 2.6 0.011 14.1 1.8 1.1 1 0 0 1 1 1 1 Arenavirus glycoprotein | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:191924-192742 Augustus predicted protein sequence Tomato scaffold694_contigs=2~191924-192742 YicC_N PF03755.8 g18023.t1 - 0.0062 16.4 2.8 0.01 15.7 2 1.3 1 0 0 1 1 1 1 YicC-like family, N-terminal region | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:223655-224542 Augustus predicted protein sequence Tomato scaffold720_contigs=9~223655-224542 DUF1199 PF06712.6 g54548.t1 - 0.053 13.3 0.2 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:220798-221142 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~220798-221142 DGF-1_4 PF11024.3 g75989.t1 - 0.063 13.6 2.3 0.77 10.1 1.2 2.3 1 1 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 | Ref_seq=scaffold2616_contigs=5, transcript_loc=scaffold2616_contigs=5:27473-27871 Augustus predicted protein sequence Tomato scaffold2616_contigs=5~27473-27871 NOG1 PF06858.9 g87548.t1 - 0.0023 17.7 0.4 24 4.8 0 3.3 3 0 0 3 3 3 0 Nucleolar GTP-binding protein 1 (NOG1) | Ref_seq=scaffold3287_contigs=1, transcript_loc=scaffold3287_contigs=1:1731-3069 Augustus predicted protein sequence Tomato scaffold3287_contigs=1~1731-3069 FAM47 PF14642.1 g71202.t1 - 0.059 12.6 0.2 0.068 12.4 0.1 1.1 1 0 0 1 1 1 0 FAM47 family | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:90706-91074 Augustus predicted protein sequence Tomato scaffold2359_contigs=12~90706-91074 DUF4592 PF15262.1 g84190.t1 - 6 7.4 8.9 8.9 6.8 6.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4592) | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:112377-113487 Augustus predicted protein sequence Tomato scaffold2765_contigs=1~112377-113487 APG17 PF04108.7 g18085.t1 - 0.02 13.7 0.2 0.026 13.3 0.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:378079-379334 Augustus predicted protein sequence Tomato scaffold720_contigs=9~378079-379334 DUF2076 PF09849.4 g68956.t1 - 0.19 11.7 1.9 0.2 11.7 1.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:194159-196146 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~194159-196146 UBN2 PF14223.1 g49745.t1 - 0.064 13 0 0.084 12.6 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:100730-101175 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~100730-101175 Snurportin1 PF11538.3 g32339.t1 - 0.84 9.4 4.3 12 5.8 0 2.8 3 0 0 3 3 3 0 Snurportin1 | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:239173-245885 Augustus predicted protein sequence Tomato scaffold1103_contigs=14~239173-245885 Cut8_M PF14483.1 g44489.t1 - 0.24 11.2 1 2.6 7.9 0.1 2.4 2 0 0 2 2 2 0 Cut8 dimerisation domain | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:93408-99326 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~93408-99326 PBP1_TM PF14812.1 g57425.t1 - 0.12 12.6 1.6 0.22 11.8 1.1 1.5 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:1-495 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~1-495 DUF501 PF04417.7 g3334.t1 - 0.084 12.7 0.2 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF501) | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:16602-17990 Augustus predicted protein sequence Tomato scaffold270_contigs=10~16602-17990 DREPP PF05558.7 g40156.t1 - 0.035 13.9 2 0.045 13.6 1.4 1.2 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:238445-238870 Augustus predicted protein sequence Tomato scaffold1292_contigs=11~238445-238870 Dppa2_A PF14049.1 g59811.t1 - 0.027 14.2 0.4 0.33 10.8 0 2 2 0 0 2 2 2 0 Dppa2/4 conserved region in higher vertebrates | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:73186-73542 Augustus predicted protein sequence Tomato scaffold1936_contigs=10~73186-73542 Macoilin PF09726.4 g83350.t1 - 2 6.5 8.7 2.3 6.4 6 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:175996-176564 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~175996-176564 MHCassoc_trimer PF08831.5 g2165.t1 - 0.37 10.6 2.5 0.77 9.6 1.8 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:47208-47675 Augustus predicted protein sequence Tomato scaffold228_contigs=4~47208-47675 DBD_Tnp_Mut PF03108.10 g1594.t1 - 0.02 14.4 0 0.039 13.5 0 1.5 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold210_contigs=2, transcript_loc=scaffold210_contigs=2:34928-35851 Augustus predicted protein sequence Tomato scaffold210_contigs=2~34928-35851 ATHILA PF03078.10 g70557.t1 - 0.00015 20.4 0 0.00016 20.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:349737-350003 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~349737-350003 DUF217 PF02697.9 g60842.t1 - 0.083 13.1 0.2 10 6.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:522296-522676 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~522296-522676 DUF4144 PF13642.1 g7656.t1 - 0.031 14.6 1.4 0.039 14.2 1 1.2 1 0 0 1 1 1 0 protein structure with unknown function | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:94444-95222 Augustus predicted protein sequence Tomato scaffold405_contigs=10~94444-95222 ATHILA PF03078.10 g2862.t1 - 0.1 11.1 0 0.12 10.9 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:38093-38557 Augustus predicted protein sequence Tomato scaffold256_contigs=5~38093-38557 Chon_Sulph_att PF06566.6 g80769.t1 - 0.017 14.7 6.1 0.019 14.6 4.2 1 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:277536-277781 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~277536-277781 DUF3081 PF11280.3 g79303.t1 - 0.11 12 0 0.16 11.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3081) | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:207905-210344 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~207905-210344 UBN2 PF14223.1 g55430.t1 - 0.00011 21.9 0 0.00022 21 0 1.4 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:151500-151843 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~151500-151843 BicD PF09730.4 g33781.t1 - 0.0057 15 6.1 0.0076 14.6 4.3 1.1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:365424-366254 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~365424-366254 DUF1284 PF06935.6 g69302.t1 - 0.031 14.4 0 0.035 14.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1284) | Ref_seq=scaffold2270_contigs=3, transcript_loc=scaffold2270_contigs=3:2197-2475 Augustus predicted protein sequence Tomato scaffold2270_contigs=3~2197-2475 PXA PF02194.10 g19092.t1 - 0.066 12.7 0.6 1.2 8.7 0.3 2.1 2 0 0 2 2 2 0 PXA domain | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:114699-118704 Augustus predicted protein sequence Tomato scaffold744_contigs=4~114699-118704 RVT_3 PF13456.1 g59849.t1 - 0.00044 19.9 0 0.00073 19.2 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:307775-308687 Augustus predicted protein sequence Tomato scaffold1936_contigs=10~307775-308687 DUF1154 PF06631.6 g60465.t1 - 0.036 13.7 1.2 0.084 12.5 0.2 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1154) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:229619-229882 Augustus predicted protein sequence Tomato scaffold1951_contigs=6~229619-229882 Soyouz_module PF14313.1 g25620.t1 - 0.0031 17 0.4 0.0044 16.5 0.3 1.3 1 0 0 1 1 1 1 N-terminal region of Paramyxovirinae phosphoprotein (P) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:13732-13959 Augustus predicted protein sequence Tomato scaffold930_contigs=4~13732-13959 RVT_3 PF13456.1 g22096.t1 - 0.00036 20.2 0 0.0005 19.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:28577-28873 Augustus predicted protein sequence Tomato scaffold819_contigs=1~28577-28873 Baculo_gp41 PF04700.7 g52127.t1 - 0.00034 20 0.7 0.017 14.5 0.1 2.1 2 0 0 2 2 2 2 Structural glycoprotein p40/gp41 conserved region | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:122552-124063 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~122552-124063 DUF4219 PF13961.1 g25207.t1 - 0.000014 24.3 0.1 0.000023 23.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:104305-105456 Augustus predicted protein sequence Tomato scaffold924_contigs=4~104305-105456 FA_FANCE PF11510.3 g54853.t1 - 0.11 11.5 0 0.13 11.4 0 1 1 0 0 1 1 1 0 Fanconi Anaemia group E protein FANCE | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:227959-229476 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~227959-229476 DUF1347 PF07079.6 g43314.t1 - 0.013 13.6 0.1 0.016 13.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:18529-18981 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~18529-18981 Cystatin PF00031.16 g62802.t1 - 0.0089 16.1 0.2 0.016 15.3 0.1 1.4 1 0 0 1 1 1 1 Cystatin domain | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:45888-47225 Augustus predicted protein sequence Tomato scaffold2008_contigs=4~45888-47225 DUF948 PF06103.6 g77103.t1 - 0.11 12.3 1 0.14 12 0.7 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold2649_contigs=6, transcript_loc=scaffold2649_contigs=6:71729-72028 Augustus predicted protein sequence Tomato scaffold2649_contigs=6~71729-72028 Img2 PF05046.9 g17990.t1 - 0.048 13.8 0 0.072 13.3 0 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:130521-130904 Augustus predicted protein sequence Tomato scaffold720_contigs=9~130521-130904 SUKH-4 PF14435.1 g62852.t1 - 0.0097 15.6 0 0.011 15.4 0 1.1 1 0 0 1 1 1 1 SUKH-4 immunity protein | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:108862-109251 Augustus predicted protein sequence Tomato scaffold2011_contigs=8~108862-109251 RVT_3 PF13456.1 g8225.t1 - 0.015 15 0.1 0.33 10.7 0 2.6 1 1 2 3 3 3 0 Reverse transcriptase-like | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:30143-33157 Augustus predicted protein sequence Tomato scaffold422_contigs=2~30143-33157 DUF4179 PF13786.1 g55006.t1 - 0.011 15.9 1.1 0.015 15.4 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:294625-294849 Augustus predicted protein sequence Tomato scaffold1732_contigs=8~294625-294849 DAZAP2 PF11029.3 g64513.t1 - 0.045 14.2 0 0.057 13.8 0 1.2 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:166802-167152 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~166802-167152 Dimer_Tnp_hAT PF05699.9 g64342.t1 - 0.00000038 29.6 0 0.00000096 28.3 0 1.6 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:46685-59590 Augustus predicted protein sequence Tomato scaffold2060_contigs=14~46685-59590 Colicin_immun PF09204.5 g39951.t1 - 0.066 13.2 1 0.097 12.7 0.7 1.3 1 1 0 1 1 1 0 Bacterial self-protective colicin-like immunity | Ref_seq=scaffold1284_contigs=5, transcript_loc=scaffold1284_contigs=5:138184-138435 Augustus predicted protein sequence Tomato scaffold1284_contigs=5~138184-138435 Docking PF08990.6 g28450.t1 - 0.06 12.6 1.3 0.097 11.9 0.9 1.4 1 0 0 1 1 1 0 Erythronolide synthase docking | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:83265-83510 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~83265-83510 DUF1682 PF07946.9 g38866.t1 - 0.015 14.1 5.3 0.018 13.9 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:68017-68592 Augustus predicted protein sequence Tomato scaffold1253_contigs=5~68017-68592 PIN PF01850.16 g14957.t1 - 0.076 13.3 0 0.11 12.8 0 1.2 1 0 0 1 1 1 0 PIN domain | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:53255-54846 Augustus predicted protein sequence Tomato scaffold614_contigs=10~53255-54846 PMAIP1 PF15150.1 g69979.t1 - 0.14 11.9 0 0.65 9.8 0 2 2 0 0 2 2 2 0 Phorbol-12-myristate-13-acetate-induced | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:103626-104033 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~103626-104033 PKK PF12474.3 g9704.t1 - 0.01 15.5 0 0.013 15.1 0 1.1 1 0 0 1 1 1 0 Polo kinase kinase | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:139328-139651 Augustus predicted protein sequence Tomato scaffold469_contigs=1~139328-139651 Gp-FAR-1 PF05823.7 g28243.t1 - 0.072 13 0.1 0.39 10.6 0 2.1 2 1 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:18476-21033 Augustus predicted protein sequence Tomato scaffold994_contigs=5~18476-21033 Big_3_2 PF12245.3 g13032.t1 - 0.0076 15.7 0.3 2.5 7.7 0 3 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold567_contigs=10, transcript_loc=scaffold567_contigs=10:26610-29622 Augustus predicted protein sequence Tomato scaffold567_contigs=10~26610-29622 Vps5 PF09325.5 g80713.t1 - 0.0032 16.7 0.6 0.0055 15.9 0.4 1.3 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:42664-46538 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~42664-46538 Sec5 PF15469.1 g36589.t1 - 0.025 14.2 0.8 0.04 13.6 0.6 1.3 1 0 0 1 1 1 0 Exocyst complex component Sec5 | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:31979-32822 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~31979-32822 SprT-like PF10263.4 g29964.t1 - 0.11 12.1 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 SprT-like family | Ref_seq=scaffold1036_contigs=2, transcript_loc=scaffold1036_contigs=2:8991-9263 Augustus predicted protein sequence Tomato scaffold1036_contigs=2~8991-9263 SpvB PF03534.8 g33637.t1 - 0.088 11.8 0 0.088 11.8 0 1.1 1 0 0 1 1 1 0 Salmonella virulence plasmid 65kDa B protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:339639-339988 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~339639-339988 Pox_C7_F8A PF03287.9 g26880.t1 - 0.13 11.9 0 0.18 11.5 0 1.1 1 0 0 1 1 1 0 Poxvirus C7/F8A protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:291016-291695 Augustus predicted protein sequence Tomato scaffold961_contigs=8~291016-291695 PAPA-1 PF04795.7 g45892.t1 - 0.04 14.6 0.6 0.056 14.1 0.4 1.2 1 0 0 1 1 1 0 PAPA-1-like conserved region | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:80110-81594 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~80110-81594 DBD_Tnp_Mut PF03108.10 g2272.t1 - 0.00015 21.2 0 0.00025 20.5 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold233_contigs=2, transcript_loc=scaffold233_contigs=2:17450-18032 Augustus predicted protein sequence Tomato scaffold233_contigs=2~17450-18032 CAF-1_p150 PF11600.3 g18740.t1 - 0.0000042 26.3 29 0.0000046 26.1 20.1 1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:332707-333105 Augustus predicted protein sequence Tomato scaffold731_contigs=13~332707-333105 Filament PF00038.16 g75727.t1 - 0.022 14.2 1.3 0.025 14 0.9 1 1 0 0 1 1 1 0 Intermediate filament protein | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:90842-91693 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~90842-91693 Sigma70_ner PF04546.8 g54620.t1 - 0.0054 16.3 6 0.008 15.8 4.2 1.3 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1724_contigs=2, transcript_loc=scaffold1724_contigs=2:15775-17003 Augustus predicted protein sequence Tomato scaffold1724_contigs=2~15775-17003 DUF4253 PF14062.1 g58009.t1 - 0.06 12.9 0 0.067 12.8 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:59307-59582 Augustus predicted protein sequence Tomato scaffold1842_contigs=9~59307-59582 DUF2868 PF11067.3 g46951.t1 - 0.08 12 0 0.1 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:890076-891507 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~890076-891507 MttA_Hcf106 PF02416.11 g19557.t1 - 0.13 11.3 0 0.2 10.7 0 1.2 1 0 0 1 1 1 0 mttA/Hcf106 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:1600-1860 Augustus predicted protein sequence Tomato scaffold756_contigs=8~1600-1860 DUF2384 PF09722.5 g73995.t1 - 0.1 12.5 0.3 0.17 11.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:45441-46538 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~45441-46538 Arg_repressor PF01316.16 g50934.t1 - 0.12 11.9 0.2 18 4.9 0 2.5 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:1-829 Augustus predicted protein sequence Tomato scaffold1580_contigs=5~1-829 AMMECR1 PF01871.12 g67778.t1 - 0.028 13.5 0.4 1.3 8 0 2.2 1 1 0 2 2 2 0 AMMECR1 | Ref_seq=scaffold2192_contigs=5, transcript_loc=scaffold2192_contigs=5:41111-43641 Augustus predicted protein sequence Tomato scaffold2192_contigs=5~41111-43641 DUF4510 PF14971.1 g16676.t1 - 0.014 15.5 0.6 0.015 15.4 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4510) | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:36010-36318 Augustus predicted protein sequence Tomato scaffold676_contigs=2~36010-36318 zf-CCHC_4 PF14392.1 g87350.t1 - 0.0047 16.5 1.2 0.0079 15.8 0.9 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold3012_contigs=1, transcript_loc=scaffold3012_contigs=1:3128-4007 Augustus predicted protein sequence Tomato scaffold3012_contigs=1~3128-4007 EpuA PF11772.3 g67075.t1 - 0.068 12.6 0.2 0.15 11.5 0.2 1.6 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:728874-729662 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~728874-729662 EBV-NA3 PF05009.7 g57816.t1 - 0.11 11.7 1.2 0.12 11.6 0.8 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1838_contigs=6, transcript_loc=scaffold1838_contigs=6:169901-170128 Augustus predicted protein sequence Tomato scaffold1838_contigs=6~169901-170128 DUF974 PF06159.8 g30097.t1 - 0.083 12.3 0.2 0.096 12.1 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF974) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:494633-494974 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~494633-494974 DUF4407 PF14362.1 g26827.t1 - 0.081 11.8 4 0.088 11.7 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:141933-142659 Augustus predicted protein sequence Tomato scaffold961_contigs=8~141933-142659 DUF4219 PF13961.1 g40032.t1 - 0.00099 18.4 0 0.0014 17.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1289_contigs=4, transcript_loc=scaffold1289_contigs=4:9624-11347 Augustus predicted protein sequence Tomato scaffold1289_contigs=4~9624-11347 DUF2171 PF09939.4 g2576.t1 - 0.088 12.8 0 0.14 12.1 0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:32461-33060 Augustus predicted protein sequence Tomato scaffold245_contigs=3~32461-33060 Imm15 PF15590.1 g68734.t1 - 0.03 13.4 0 0.047 12.7 0 1.3 1 0 0 1 1 1 0 Immunity protein 15 | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:156657-157022 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~156657-157022 BCMA-Tall_bind PF09257.5 g67765.t1 - 5.4 7 7.6 0.61 10 1.1 2.1 2 0 0 2 2 2 0 BCMA, TALL-1 binding | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:93830-94294 Augustus predicted protein sequence Tomato scaffold2189_contigs=3~93830-94294 Leader_Trp PF08255.6 g19783.t1 - 0.1 12.2 0.6 0.21 11.3 0.5 1.5 1 0 0 1 1 1 0 Trp-operon Leader Peptide | Ref_seq=scaffold758_contigs=7, transcript_loc=scaffold758_contigs=7:232588-233280 Augustus predicted protein sequence Tomato scaffold758_contigs=7~232588-233280 Retrotrans_gag PF03732.12 g67026.t1 - 0.039 14 0 0.19 11.8 0 1.9 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:534506-535776 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~534506-535776 Transposase_28 PF04195.7 g35120.t1 - 0.0011 18.2 0.1 0.0017 17.6 0 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:300937-302088 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~300937-302088 RE_Eco29kI PF09517.5 g14554.t1 - 0.13 11.6 0 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Eco29kI restriction endonuclease | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:111867-112103 Augustus predicted protein sequence Tomato scaffold597_contigs=5~111867-112103 DUF1075 PF06388.6 g35332.t1 - 0.1 12.2 4.2 0.26 10.9 1.7 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:98197-98809 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~98197-98809 DUF1656 PF07869.7 g30019.t1 - 0.024 14.4 0 1.7 8.5 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:218582-220323 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~218582-220323 Aft1_HRR PF11787.3 g66984.t1 - 0.035 15.1 0.5 4.1 8.5 0 2.1 2 0 0 2 2 2 0 Aft1 HRR domain | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:361182-361695 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~361182-361695 DBD_Tnp_Mut PF03108.10 g36809.t1 - 3.7E-009 36 0.1 6.8E-009 35.1 0.1 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:102415-103508 Augustus predicted protein sequence Tomato scaffold1209_contigs=7~102415-103508 MCR_C PF04609.7 g40526.t1 - 0.034 12.9 0.2 0.043 12.6 0.1 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein C | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:277424-277798 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~277424-277798 Mlo PF03094.10 g31634.t1 - 0.12 10.4 0 0.12 10.4 0 1 1 0 0 1 1 1 0 Mlo family | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:103080-104152 Augustus predicted protein sequence Tomato scaffold1081_contigs=4~103080-104152 UBN2 PF14223.1 g65589.t1 - 0.0022 17.7 0.1 0.9 9.3 0 2.2 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:54428-54887 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~54428-54887 zf-RVT PF13966.1 g21671.t1 - 0.000038 23.9 0 0.000054 23.4 0 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:93161-93677 Augustus predicted protein sequence Tomato scaffold810_contigs=11~93161-93677 FAM176 PF14851.1 g25128.t1 - 0.0033 17.1 1.8 0.0049 16.5 1.2 1.4 1 0 0 1 1 1 1 FAM176 family | Ref_seq=scaffold917_contigs=1, transcript_loc=scaffold917_contigs=1:1452-1937 Augustus predicted protein sequence Tomato scaffold917_contigs=1~1452-1937 DUF1517 PF07466.6 g68061.t1 - 1.2 8 3.3 1.5 7.7 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:290428-290910 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~290428-290910 Tropomyosin PF00261.15 g21584.t1 - 0.19 10.8 0 0.24 10.4 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:20437-22500 Augustus predicted protein sequence Tomato scaffold802_contigs=3~20437-22500 NAM-associated PF14303.1 g51316.t1 - 0.0000046 27 5.3 0.0000046 27 3.6 1.3 1 1 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:59402-59815 Augustus predicted protein sequence Tomato scaffold1611_contigs=6~59402-59815 NST1 PF13945.1 g60549.t1 - 0.53 10.3 3.2 0.55 10.2 2.2 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:205602-205957 Augustus predicted protein sequence Tomato scaffold1954_contigs=4~205602-205957 FAP PF07174.6 g69774.t1 - 0.022 14 1.8 0.023 14 1.3 1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:835023-835229 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~835023-835229 Paxillin PF03535.8 g70345.t1 - 0.022 14.5 0.3 0.032 14 0.2 1.2 1 0 0 1 1 1 0 Paxillin family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:612326-612934 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~612326-612934 zf-CCHC PF00098.18 g37528.t1 - 0.00054 19.7 0.8 0.00089 19 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:73542-73919 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~73542-73919 Abhydrolase_9_N PF15420.1 g39024.t1 - 0.068 12.9 3.7 0.093 12.4 2.6 1.2 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus | Ref_seq=scaffold1260_contigs=17, transcript_loc=scaffold1260_contigs=17:348213-349692 Augustus predicted protein sequence Tomato scaffold1260_contigs=17~348213-349692 DUF3357 PF11837.3 g44597.t1 - 0.038 13.8 0.5 0.063 13.1 0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:319214-319723 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~319214-319723 DUF4261 PF14080.1 g36626.t1 - 0.11 12.3 0 0.42 10.4 0 2 3 0 0 3 3 3 0 Domain of unknown function (DUF4261) | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:136743-142523 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~136743-142523 ATHILA PF03078.10 g56124.t1 - 9.7E-009 34.3 0 0.00000002 33.3 0 1.4 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1790_contigs=2, transcript_loc=scaffold1790_contigs=2:5546-8266 Augustus predicted protein sequence Tomato scaffold1790_contigs=2~5546-8266 NRN1 PF15056.1 g81399.t1 - 0.083 12.8 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 Neuritin protein family | Ref_seq=scaffold2728_contigs=7, transcript_loc=scaffold2728_contigs=7:109817-110369 Augustus predicted protein sequence Tomato scaffold2728_contigs=7~109817-110369 Prolactin_RP PF15172.1 g27494.t1 - 0.15 11.2 0 0.15 11.2 0 2.3 3 0 0 3 3 3 0 Prolactin-releasing peptide | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:277478-277741 Augustus predicted protein sequence Tomato scaffold980_contigs=13~277478-277741 Sushi_2 PF09014.5 g70251.t1 - 0.06 13.1 0 0.95 9.2 0 2.7 3 0 0 3 3 3 0 Beta-2-glycoprotein-1 fifth domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:147352-148554 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~147352-148554 EGF_alliinase PF04863.8 g66735.t1 - 0.96 9.4 5.3 0.19 11.7 0.4 1.9 2 0 0 2 2 2 0 Alliinase EGF-like domain | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:204178-204459 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~204178-204459 CD36 PF01130.16 g32647.t1 - 0.12 10.6 0 0.14 10.4 0 1 1 0 0 1 1 1 0 CD36 family | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:269313-270792 Augustus predicted protein sequence Tomato scaffold1108_contigs=23~269313-270792 DUF4330 PF14221.1 g24568.t1 - 0.11 12.3 0.1 0.12 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:74077-74331 Augustus predicted protein sequence Tomato scaffold888_contigs=4~74077-74331 Somatostatin PF03002.10 g24723.t1 - 0.0077 15.8 1 0.016 14.7 0.7 1.5 1 0 0 1 1 1 1 Somatostatin/Cortistatin family | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:211236-212809 Augustus predicted protein sequence Tomato scaffold893_contigs=2~211236-212809 SDA1 PF05285.7 g66318.t1 - 0.55 9.4 20.5 0.6 9.3 14.2 1.2 1 0 0 1 1 1 0 SDA1 | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:21213-21524 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~21213-21524 CDK2AP PF09806.4 g12872.t1 - 0.065 13.4 0.6 0.11 12.7 0.4 1.3 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:192351-194755 Augustus predicted protein sequence Tomato scaffold561_contigs=10~192351-194755 RXT2_N PF08595.6 g57236.t1 - 0.18 11.6 11.6 0.33 10.7 8.1 1.5 1 1 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:247625-247894 Augustus predicted protein sequence Tomato scaffold1829_contigs=9~247625-247894 CR6_interact PF10147.4 g82465.t1 - 0.043 13.1 0 0.068 12.4 0 1.3 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:125883-126476 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~125883-126476 PT PF04886.7 g70095.t1 - 0.16 11.3 5.7 0.096 12 2.4 1.7 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:12961-13614 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~12961-13614 FA_desaturase PF00487.19 g17424.t1 - 0.068 12.6 3.3 0.1 12 2.3 1.2 1 0 0 1 1 1 0 Fatty acid desaturase | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:1-2441 Augustus predicted protein sequence Tomato scaffold707_contigs=5~1-2441 NOA36 PF06524.7 g68268.t1 - 0.25 10.5 5.5 0.39 9.9 3.8 1.3 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:74996-77435 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~74996-77435 MHCassoc_trimer PF08831.5 g75283.t1 - 0.041 13.7 0.1 0.098 12.5 0.1 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:90748-91883 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~90748-91883 MerE PF05052.7 g74150.t1 - 0.016 15.1 0.3 0.27 11.2 0.1 2.2 2 0 0 2 2 2 0 MerE protein | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:93829-94535 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~93829-94535 NESP55 PF06390.7 g47914.t1 - 0.25 10.6 8.4 0.29 10.4 5.8 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:54228-54500 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~54228-54500 CENP-B_dimeris PF09026.5 g41371.t1 - 0.0035 17.5 2.9 0.0053 16.9 2 1.3 1 0 0 1 1 1 1 Centromere protein B dimerisation domain | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:155313-168120 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~155313-168120 MULE PF10551.4 g64679.t1 - 0.00000064 29.4 0.1 0.00000064 29.4 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:22215-26368 Augustus predicted protein sequence Tomato scaffold2083_contigs=30~22215-26368 YkuD PF03734.9 g57706.t1 - 0.13 12.4 0 0.15 12.3 0 1.2 1 0 0 1 1 1 0 L,D-transpeptidase catalytic domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:351475-352399 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~351475-352399 Hce2 PF14856.1 g15029.t1 - 0.12 12.2 0 0.2 11.5 0 1.6 1 1 0 1 1 1 0 Pathogen effector; putative necrosis-inducing factor | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:36227-38715 Augustus predicted protein sequence Tomato scaffold617_contigs=9~36227-38715 DUF2119 PF09892.4 g4241.t1 - 0.039 13.2 0 0.082 12.1 0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:466285-467673 Augustus predicted protein sequence Tomato scaffold293_contigs=5~466285-467673 TMEM141 PF15110.1 g86574.t1 - 0.16 12.3 0.2 0.32 11.2 0 1.6 2 0 0 2 2 2 0 TMEM141 protein family | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:37097-38215 Augustus predicted protein sequence Tomato scaffold2873_contigs=1~37097-38215 Gly-rich_Ago1 PF12764.2 g35988.t1 - 5.1 7.7 5.9 2 9 1.6 2 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:159534-160076 Augustus predicted protein sequence Tomato scaffold1186_contigs=6~159534-160076 Snapin_Pallidin PF14712.1 g61834.t1 - 0.068 13.4 0.3 0.091 13 0.2 1.1 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:4982-5520 Augustus predicted protein sequence Tomato scaffold1978_contigs=4~4982-5520 ING PF12998.2 g80289.t1 - 0.0068 16.6 0.8 0.013 15.7 0.6 1.5 1 1 0 1 1 1 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:997576-998500 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~997576-998500 Retrotrans_gag PF03732.12 g44682.t1 - 0.056 13.5 0 0.061 13.3 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:15241-15498 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~15241-15498 CENP-F_leu_zip PF10473.4 g10859.t1 - 0.0039 17 2.3 0.0057 16.5 1.6 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:143390-145508 Augustus predicted protein sequence Tomato scaffold508_contigs=9~143390-145508 DUF605 PF04652.11 g34160.t1 - 2 7.7 9.2 2.2 7.5 6.4 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:28257-28841 Augustus predicted protein sequence Tomato scaffold1143_contigs=1~28257-28841 DMPK_coil PF08826.5 g45871.t1 - 0.0022 17.8 6.7 0.03 14.2 1 2.3 1 1 1 2 2 2 2 DMPK coiled coil domain like | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:70783-71223 Augustus predicted protein sequence Tomato scaffold1466_contigs=3~70783-71223 Plectin PF00681.15 g63478.t1 - 0.053 13 0 0.15 11.5 0 1.7 2 0 0 2 2 2 0 Plectin repeat | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:87147-87697 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~87147-87697 DUF1904 PF08921.6 g36161.t1 - 0.093 12.7 0 0.13 12.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1904) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:12653-13663 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~12653-13663 NADH_dh_m_C1 PF15088.1 g38857.t1 - 0.095 12.2 0 0.2 11.1 0 1.5 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:11374-12893 Augustus predicted protein sequence Tomato scaffold1253_contigs=5~11374-12893 KH_2 PF07650.12 g78990.t1 - 0.011 15.2 0.1 0.016 14.7 0.1 1.2 1 0 0 1 1 1 0 KH domain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:74903-77292 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~74903-77292 BUD22 PF09073.5 g67862.t1 - 0.062 12.3 6.4 0.069 12.2 4.5 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:29731-37458 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~29731-37458 FUSC PF04632.7 g66069.t1 - 2.4 6.4 5.6 3.1 6.1 3.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:10229-11158 Augustus predicted protein sequence Tomato scaffold2148_contigs=3~10229-11158 SGT1 PF07093.6 g57981.t1 - 0.52 8.6 7.8 0.59 8.4 5.4 1.1 1 0 0 1 1 1 0 SGT1 protein | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:218387-218812 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~218387-218812 RmuC PF02646.11 g47666.t1 - 0.01 14.7 0 0.013 14.3 0 1.1 1 0 0 1 1 1 0 RmuC family | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:87757-91079 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~87757-91079 Tox-MPTase2 PF15638.1 g6346.t1 - 0.13 11.7 1.2 2.8 7.4 0.1 2.2 2 0 0 2 2 2 0 Metallopeptidase toxin 2 | Ref_seq=scaffold361_contigs=3, transcript_loc=scaffold361_contigs=3:61209-62637 Augustus predicted protein sequence Tomato scaffold361_contigs=3~61209-62637 DUF1347 PF07079.6 g7977.t1 - 0.041 12.1 0 0.048 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:96741-97202 Augustus predicted protein sequence Tomato scaffold413_contigs=6~96741-97202 ATHILA PF03078.10 g64122.t1 - 0.093 11.3 0.1 0.21 10.1 0 1.6 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:181595-182331 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~181595-182331 Nucleoplasmin PF03066.10 g65454.t1 - 0.00062 19.3 2.1 0.00062 19.3 1.4 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:29542-29805 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~29542-29805 DUF2960 PF11173.3 g39820.t1 - 0.036 14.3 0 0.051 13.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2960) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:383023-383367 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~383023-383367 APC_CDC26 PF10471.4 g47340.t1 - 0.77 10.5 5.3 9.2 7 0.6 2.1 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:212494-212802 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~212494-212802 DUF1347 PF07079.6 g84501.t1 - 0.028 12.6 0.2 0.06 11.5 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:41180-42532 Augustus predicted protein sequence Tomato scaffold2772_contigs=1~41180-42532 FH2 PF02181.18 g18888.t1 - 0.021 13.7 0 0.026 13.4 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:823643-824281 Augustus predicted protein sequence Tomato scaffold731_contigs=13~823643-824281 TMEM191C PF15194.1 g59261.t1 - 0.0078 16 0.1 0.0095 15.8 0.1 1.1 1 0 0 1 1 1 1 TMEM191C family | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:118386-118595 Augustus predicted protein sequence Tomato scaffold1904_contigs=8~118386-118595 Peptidase_S46 PF10459.4 g85957.t1 - 0.046 12.1 4.4 0.055 11.8 3.1 1.2 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:61130-62446 Augustus predicted protein sequence Tomato scaffold2829_contigs=1~61130-62446 PsbP PF01789.11 g63272.t1 - 0.022 14.2 0.3 0.028 13.8 0.2 1.1 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:18612-19106 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~18612-19106 Auxin_repressed PF05564.7 g37716.t1 - 0.084 13.4 0.8 14 6.2 0.1 2.6 1 1 1 3 3 3 0 Dormancy/auxin associated protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:33249-34473 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~33249-34473 DUF3145 PF11343.3 g68308.t1 - 0.13 11.7 0 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3145) | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:239590-240102 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~239590-240102 Phosphoprotein PF00922.12 g15608.t1 - 0.085 12 0.3 0.089 12 0.2 1.1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:129560-129880 Augustus predicted protein sequence Tomato scaffold635_contigs=5~129560-129880 Transposase_28 PF04195.7 g63309.t1 - 0.12 11.6 0.1 0.21 10.8 0.1 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:174346-176820 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~174346-176820 DUF1985 PF09331.6 g82505.t1 - 0.000072 22.6 0 0.000072 22.6 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:46576-46989 Augustus predicted protein sequence Tomato scaffold2745_contigs=7~46576-46989 FH2 PF02181.18 g34321.t1 - 0.013 14.4 0.3 0.017 14 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:15648-18084 Augustus predicted protein sequence Tomato scaffold1148_contigs=4~15648-18084 Rib_recp_KP_reg PF05104.7 g63126.t1 - 8.2 6.9 7.2 13 6.2 5 1.2 1 0 0 1 1 1 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:261494-262197 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~261494-262197 TGF_beta_GS PF08515.7 g21719.t1 - 0.55 9.6 2.7 1.1 8.7 1.9 1.5 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:327944-329035 Augustus predicted protein sequence Tomato scaffold810_contigs=11~327944-329035 GAS PF13851.1 g84847.t1 - 0.0012 18.1 2.2 0.0014 17.8 1.5 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2782_contigs=1, transcript_loc=scaffold2782_contigs=1:49462-49806 Augustus predicted protein sequence Tomato scaffold2782_contigs=1~49462-49806 Cor1 PF04803.7 g32875.t1 - 0.01 15.5 0.1 0.019 14.6 0.1 1.4 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:243066-244142 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~243066-244142 DUF3073 PF11273.3 g426.t1 - 0.076 13.5 0.6 0.1 13.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:19897-20103 Augustus predicted protein sequence Tomato scaffold36_contigs=4~19897-20103 ERM PF00769.14 g74002.t1 - 0.01 15.4 15.8 0.012 15.1 11 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:59104-59499 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~59104-59499 PsaX PF08078.7 g3240.t1 - 0.74 9.7 5 21 5.1 1.7 2.3 2 0 0 2 2 2 0 PsaX family | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:150880-155562 Augustus predicted protein sequence Tomato scaffold264_contigs=10~150880-155562 zf-CCHC_4 PF14392.1 g58739.t1 - 0.00026 20.5 0.9 0.00066 19.2 0.6 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:52523-54544 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~52523-54544 PNK3P PF08645.6 g67050.t1 - 0.065 12.6 0 0.1 12 0 1.3 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:618005-619150 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~618005-619150 PI31_Prot_C PF08577.6 g15377.t1 - 1.6 9.4 5.2 2.7 8.6 3.6 1.4 1 1 0 1 1 1 0 PI31 proteasome regulator | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:288589-289029 Augustus predicted protein sequence Tomato scaffold624_contigs=9~288589-289029 DUF1676 PF07898.8 g76643.t1 - 0.08 13.2 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:155291-156061 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~155291-156061 zf-CCHC PF00098.18 g14998.t1 - 0.00059 19.6 1.8 0.0013 18.5 1.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:23393-23899 Augustus predicted protein sequence Tomato scaffold616_contigs=8~23393-23899 zinc_ribbon_2 PF13240.1 g40488.t1 - 0.61 9.6 6.2 2.8 7.5 2.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:76435-76992 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~76435-76992 ScpA_ScpB PF02616.9 g2026.t1 - 0.35 10.4 3.3 0.38 10.3 2.3 1.1 1 0 0 1 1 1 0 ScpA/B protein | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:156006-157501 Augustus predicted protein sequence Tomato scaffold223_contigs=4~156006-157501 RVT_3 PF13456.1 g47803.t1 - 0.082 12.6 0.1 0.15 11.8 0 1.5 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:162894-163227 Augustus predicted protein sequence Tomato scaffold1499_contigs=18~162894-163227 DUF4614 PF15391.1 g22149.t1 - 0.65 9.7 3.7 0.72 9.5 2.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:65390-65736 Augustus predicted protein sequence Tomato scaffold823_contigs=8~65390-65736 ATHILA PF03078.10 g37844.t1 - 0.0022 16.6 0.1 0.0032 16.1 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:39885-43185 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~39885-43185 HDAC4_Gln PF12203.3 g46149.t1 - 0.068 13.1 1.5 0.12 12.3 1.1 1.3 1 0 0 1 1 1 0 Glutamine rich N terminal domain of histone deacetylase 4 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:225901-233232 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~225901-233232 TPPK_C PF12555.3 g14629.t1 - 2 8.2 4.8 3.6 7.3 3.3 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:134327-134701 Augustus predicted protein sequence Tomato scaffold598_contigs=2~134327-134701 RRN9 PF10680.4 g36418.t1 - 0.079 12.7 0 0.23 11.2 0 1.7 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:489362-490918 Augustus predicted protein sequence Tomato scaffold1193_contigs=15~489362-490918 Moricin PF06451.6 g47283.t1 - 0.063 12.7 0.2 6.9 6.2 0 2.4 3 0 0 3 3 3 0 Moricin | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:60379-60738 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~60379-60738 Peptidase_M8 PF01457.11 g20664.t1 - 0.015 13.6 0.1 0.016 13.5 0.1 1 1 0 0 1 1 1 0 Leishmanolysin | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:58230-58469 Augustus predicted protein sequence Tomato scaffold778_contigs=11~58230-58469 Adeno_shaft PF00608.12 g75361.t1 - 0.078 12.5 1 17 5.2 0.1 2.8 2 0 0 2 2 2 0 Adenoviral fibre protein (repeat/shaft region) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:128164-129900 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~128164-129900 DUF3645 PF12359.3 g53559.t1 - 0.063 12.4 2.1 5.3 6.2 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3645) | Ref_seq=scaffold1696_contigs=1, transcript_loc=scaffold1696_contigs=1:31402-31710 Augustus predicted protein sequence Tomato scaffold1696_contigs=1~31402-31710 bZIP_1 PF00170.16 g63364.t1 - 0.08 12.9 0.7 0.15 12 0.5 1.4 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:418409-420010 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~418409-420010 Gly_acyl_tr_N PF06021.6 g23913.t1 - 0.043 13.2 0 0.049 13 0 1 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:95545-95847 Augustus predicted protein sequence Tomato scaffold874_contigs=5~95545-95847 SR-25 PF10500.4 g26900.t1 - 0.03 13.7 7 0.036 13.5 4.9 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:389562-389957 Augustus predicted protein sequence Tomato scaffold961_contigs=8~389562-389957 PsiF_repeat PF07769.9 g82541.t1 - 1.3 8.6 3.7 3.2 7.3 2.6 1.6 1 0 0 1 1 1 0 psiF repeat | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:25350-25891 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~25350-25891 DUF4164 PF13747.1 g69564.t1 - 0.093 12.8 0.3 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:142785-143275 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~142785-143275 TetR_C_4 PF08359.6 g57343.t1 - 0.01 15.7 0 0.013 15.4 0 1.1 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:275853-276245 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~275853-276245 zf-CCHC PF00098.18 g1861.t1 - 0.000018 24.4 6.5 0.000046 23.1 4.5 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:91328-91800 Augustus predicted protein sequence Tomato scaffold218_contigs=4~91328-91800 RVP_2 PF08284.6 g47171.t1 - 0.0098 15.8 0 0.017 15 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:94515-100959 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~94515-100959 COX4 PF02936.9 g446.t1 - 0.12 12 0.1 0.16 11.7 0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV | Ref_seq=scaffold37_contigs=1, transcript_loc=scaffold37_contigs=1:9334-9678 Augustus predicted protein sequence Tomato scaffold37_contigs=1~9334-9678 HAUS4 PF14735.1 g38752.t1 - 0.083 12.1 3.4 0.12 11.6 2.4 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:231212-231918 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~231212-231918 NCA2 PF08637.5 g10074.t1 - 0.021 13.7 0.2 0.025 13.4 0.1 1.1 1 0 0 1 1 1 0 ATP synthase regulation protein NCA2 | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:134086-134487 Augustus predicted protein sequence Tomato scaffold482_contigs=7~134086-134487 Nup_retrotrp_bd PF10599.4 g63567.t1 - 0.11 13.1 4.3 0.42 11.2 1.6 2.3 2 0 0 2 2 2 0 Retro-transposon transporting motif | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:531767-534823 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~531767-534823 NADH_u_ox_C PF12853.2 g67078.t1 - 0.021 14.5 0.1 0.07 12.8 0 1.9 2 0 0 2 2 2 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:738340-739753 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~738340-739753 DBD_Tnp_Mut PF03108.10 g15523.t1 - 0.00000046 29.3 0.4 0.00000059 28.9 0.3 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:71637-71945 Augustus predicted protein sequence Tomato scaffold631_contigs=3~71637-71945 TBD PF12845.2 g58365.t1 - 0.021 14.3 0.8 0.048 13.2 0.6 1.6 1 0 0 1 1 1 0 TBD domain | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:204635-206086 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~204635-206086 SlyX PF04102.7 g28314.t1 - 0.094 13 1 0.39 11.1 0.7 2.1 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:260264-261648 Augustus predicted protein sequence Tomato scaffold994_contigs=5~260264-261648 MUG113 PF13455.1 g62910.t1 - 0.019 15.4 0.6 0.03 14.7 0.4 1.4 1 0 0 1 1 1 0 Meiotically up-regulated gene 113 | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:265307-265933 Augustus predicted protein sequence Tomato scaffold2012_contigs=13~265307-265933 Peroxin-13_N PF04088.8 g74468.t1 - 0.029 14.3 0.1 0.044 13.7 0.1 1.2 1 0 0 1 1 1 0 Peroxin 13, N-terminal region | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:21895-23843 Augustus predicted protein sequence Tomato scaffold2547_contigs=8~21895-23843 DUF2890 PF11081.3 g24016.t1 - 0.63 10 3.4 0.68 9.9 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:126934-127368 Augustus predicted protein sequence Tomato scaffold875_contigs=10~126934-127368 Tmemb_cc2 PF10267.4 g86685.t1 - 0.0017 16.9 0.1 0.0021 16.7 0.1 1 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold2882_contigs=1, transcript_loc=scaffold2882_contigs=1:38639-39241 Augustus predicted protein sequence Tomato scaffold2882_contigs=1~38639-39241 DUF1344 PF07076.6 g67335.t1 - 0.23 11 2.7 3.7 7.1 0.1 3 1 1 2 3 3 3 0 Protein of unknown function (DUF1344) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:303442-303657 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~303442-303657 CCDC84 PF14968.1 g32327.t1 - 0.08 12.4 0.2 0.13 11.7 0.2 1.3 1 0 0 1 1 1 0 Coiled coil protein 84 | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:192903-194314 Augustus predicted protein sequence Tomato scaffold1103_contigs=14~192903-194314 DBD_Tnp_Mut PF03108.10 g37441.t1 - 0.015 14.9 0 0.023 14.2 0 1.2 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:264639-265471 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~264639-265471 Glycohydro_20b2 PF14845.1 g48728.t1 - 0.11 13.1 0.1 0.12 13 0.1 1.1 1 0 0 1 1 1 0 beta-acetyl hexosaminidase like | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:909293-909526 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~909293-909526 HPHLAWLY PF14925.1 g84658.t1 - 0.057 11.4 0.3 0.052 11.5 0.2 1 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:99809-100681 Augustus predicted protein sequence Tomato scaffold2776_contigs=1~99809-100681 S19 PF06756.6 g60203.t1 - 0.024 14.4 1 3.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Chorion protein S19 C-terminal | Ref_seq=scaffold1943_contigs=27, transcript_loc=scaffold1943_contigs=27:44757-46981 Augustus predicted protein sequence Tomato scaffold1943_contigs=27~44757-46981 UBN2 PF14223.1 g77191.t1 - 0.0012 18.6 0.1 0.089 12.5 0 2.6 3 0 0 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:9131-10465 Augustus predicted protein sequence Tomato scaffold2651_contigs=23~9131-10465 DUF2790 PF10976.3 g75753.t1 - 0.045 13.5 0.1 4 7.3 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2790) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:212608-221316 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~212608-221316 bZIP_1 PF00170.16 g30507.t1 - 0.032 14.1 6 0.21 11.5 0.5 2.5 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:95793-96278 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~95793-96278 HTH_32 PF13565.1 g56136.t1 - 1.8 9.4 4.1 4.4 8.1 2.9 1.7 1 1 0 1 1 1 0 Homeodomain-like domain | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:28526-28888 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~28526-28888 DUF1682 PF07946.9 g46349.t1 - 0.0037 16.1 1.4 0.0041 16 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:106568-107341 Augustus predicted protein sequence Tomato scaffold1480_contigs=4~106568-107341 Selenoprotein_S PF06936.6 g7141.t1 - 0.23 10.9 4.1 0.29 10.6 2.8 1.2 1 1 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:250968-252541 Augustus predicted protein sequence Tomato scaffold387_contigs=7~250968-252541 Telomere_reg-2 PF10193.4 g63104.t1 - 0.1 12.8 0.2 0.14 12.4 0.1 1.3 1 0 0 1 1 1 0 Telomere length regulation protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:194758-196011 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~194758-196011 ATHILA PF03078.10 g6542.t1 - 0.00011 20.9 0 0.00015 20.5 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:92611-93360 Augustus predicted protein sequence Tomato scaffold378_contigs=5~92611-93360 GHL15 PF14885.1 g73401.t1 - 0.39 10.9 2.5 2.3 8.5 0.1 2.1 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase family 15 | Ref_seq=scaffold2453_contigs=1, transcript_loc=scaffold2453_contigs=1:16650-16925 Augustus predicted protein sequence Tomato scaffold2453_contigs=1~16650-16925 zf-CCHC PF00098.18 g4798.t1 - 0.000088 22.2 7.4 0.00021 21 5.1 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:80020-81126 Augustus predicted protein sequence Tomato scaffold308_contigs=4~80020-81126 DivIC PF04977.10 g9182.t1 - 0.0022 17.4 1.6 0.0022 17.4 1.1 2.1 1 1 1 2 2 2 1 Septum formation initiator | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:218199-219359 Augustus predicted protein sequence Tomato scaffold448_contigs=2~218199-219359 PT PF04886.7 g32174.t1 - 2.4 7.5 4.5 12 5.3 0.2 2.2 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:656848-662530 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~656848-662530 bZIP_2 PF07716.10 g46861.t1 - 0.026 14.3 0.7 9 6.2 0.1 2.5 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:400577-401483 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~400577-401483 Dimerisation PF08100.6 g16870.t1 - 0.1 12.4 0 1.1 9.1 0 2.3 2 1 0 2 2 2 0 Dimerisation domain | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:123967-125376 Augustus predicted protein sequence Tomato scaffold685_contigs=4~123967-125376 DUF4220 PF13968.1 g15650.t1 - 0.0033 16.5 0.6 0.0041 16.2 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4220) | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:5719-6718 Augustus predicted protein sequence Tomato scaffold639_contigs=2~5719-6718 Phage_Gp23 PF10669.4 g19896.t1 - 0.7 10 3.6 1.6 8.8 2.5 1.6 1 1 0 1 1 1 0 Protein gp23 (Bacteriophage A118) | Ref_seq=scaffold761_contigs=1, transcript_loc=scaffold761_contigs=1:25254-25676 Augustus predicted protein sequence Tomato scaffold761_contigs=1~25254-25676 Nop14 PF04147.7 g65158.t1 - 8.1 4.2 39.9 10 3.8 27.7 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:104744-105961 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~104744-105961 Elongin_A PF06881.6 g6982.t1 - 0.12 12.7 0.1 0.14 12.5 0 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription factor SIII (Elongin) subunit A | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:61170-61412 Augustus predicted protein sequence Tomato scaffold386_contigs=10~61170-61412 TMPIT PF07851.8 g75434.t1 - 0.14 11.1 0.2 0.19 10.7 0.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein | Ref_seq=scaffold2594_contigs=17, transcript_loc=scaffold2594_contigs=17:91987-92277 Augustus predicted protein sequence Tomato scaffold2594_contigs=17~91987-92277 14-3-3 PF00244.15 g80624.t1 - 0.0013 17.9 0.3 0.0018 17.4 0.2 1.1 1 0 0 1 1 1 1 14-3-3 protein | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:57722-62944 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~57722-62944 Phage_DsbA PF11126.3 g80047.t1 - 0.031 14.3 0.6 0.21 11.6 0.4 2.1 1 1 0 1 1 1 0 Transcriptional regulator DsbA | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:50673-55939 Augustus predicted protein sequence Tomato scaffold2706_contigs=4~50673-55939 UBN2 PF14223.1 g22109.t1 - 0.058 13.1 0.1 0.13 12.1 0 1.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:58789-59064 Augustus predicted protein sequence Tomato scaffold819_contigs=1~58789-59064 IBV_3A PF03617.8 g30678.t1 - 0.059 13.1 0.4 0.096 12.4 0.2 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:12394-13038 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~12394-13038 PPE PF00823.14 g22027.t1 - 0.071 12.9 0 12 5.6 0 2.4 2 1 0 2 2 2 0 PPE family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:653612-654238 Augustus predicted protein sequence Tomato scaffold817_contigs=11~653612-654238 DUF1347 PF07079.6 g79238.t1 - 0.11 10.7 0 0.12 10.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2688_contigs=4, transcript_loc=scaffold2688_contigs=4:123023-123484 Augustus predicted protein sequence Tomato scaffold2688_contigs=4~123023-123484 GD_AH_C PF04295.8 g42467.t1 - 0.027 13.1 0 0.036 12.7 0 1.1 1 0 0 1 1 1 0 D-galactarate dehydratase / Altronate hydrolase, C terminus | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:659672-660025 Augustus predicted protein sequence Tomato scaffold1357_contigs=25~659672-660025 Defensin_3 PF08131.6 g75354.t1 - 0.024 14.5 1.2 0.042 13.8 0.8 1.3 1 0 0 1 1 1 0 Defensin-like peptide family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:77752-80924 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~77752-80924 FSH1 PF03959.8 g63348.t1 - 0.051 13 0 0.074 12.4 0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:348582-354859 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~348582-354859 Flu_PB1 PF00602.12 g38303.t1 - 0.033 11.9 0 0.037 11.7 0 1 1 0 0 1 1 1 0 Influenza RNA-dependent RNA polymerase subunit PB1 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:937555-937884 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~937555-937884 Tropomyosin PF00261.15 g50.t1 - 0.0000017 27.3 3.1 0.0000017 27.3 2.1 1.8 2 0 0 2 2 2 1 Tropomyosin | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:36924-37804 Augustus predicted protein sequence Tomato scaffold3_contigs=2~36924-37804 XhlA PF10779.4 g80314.t1 - 0.023 14.5 1 0.029 14.2 0.7 1.1 1 0 0 1 1 1 0 Haemolysin XhlA | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:12883-13483 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~12883-13483 adh_short PF00106.20 g74674.t1 - 0.021 14.7 0 0.032 14.1 0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:351640-355088 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~351640-355088 UBN2 PF14223.1 g64835.t1 - 0.0022 17.7 0.8 0.027 14.2 0 2.2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:99832-100388 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~99832-100388 Zein PF01559.11 g76431.t1 - 0.058 12.6 0.4 0.069 12.3 0.3 1 1 0 0 1 1 1 0 Zein seed storage protein | Ref_seq=scaffold2627_contigs=1, transcript_loc=scaffold2627_contigs=1:1-564 Augustus predicted protein sequence Tomato scaffold2627_contigs=1~1-564 DUF1015 PF06245.6 g1502.t1 - 0.036 12.5 0.2 0.038 12.4 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:60995-61300 Augustus predicted protein sequence Tomato scaffold204_contigs=2~60995-61300 DUF1769 PF08588.5 g14379.t1 - 0.14 12.1 0 0.25 11.3 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1769) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:118621-120113 Augustus predicted protein sequence Tomato scaffold594_contigs=19~118621-120113 FTP PF07504.8 g75750.t1 - 0.044 13.2 0.1 0.074 12.5 0 1.3 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:182196-182546 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~182196-182546 DHC_N1 PF08385.7 g73659.t1 - 0.048 12 0.1 0.061 11.6 0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:14933-15541 Augustus predicted protein sequence Tomato scaffold2491_contigs=9~14933-15541 DUF3778 PF12620.3 g75043.t1 - 0.061 12.8 0.5 10 5.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:11224-11688 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~11224-11688 Acetyltransf_3 PF13302.1 g16447.t1 - 0.078 13.1 0 0.11 12.6 0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:142114-143463 Augustus predicted protein sequence Tomato scaffold671_contigs=7~142114-143463 CENP-B_dimeris PF09026.5 g25147.t1 - 0.024 14.8 5.3 0.042 14 3.7 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold920_contigs=3, transcript_loc=scaffold920_contigs=3:13804-15184 Augustus predicted protein sequence Tomato scaffold920_contigs=3~13804-15184 DUF3289 PF11692.3 g47940.t1 - 0.0075 15.5 0.5 0.011 15 0.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3289) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:131544-132017 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~131544-132017 UPF0158 PF03682.8 g46235.t1 - 0.033 13.7 1.5 0.033 13.7 1 2.4 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0158) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:655168-655812 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~655168-655812 APG6 PF04111.7 g23505.t1 - 0.036 13 12.5 0.044 12.8 8.7 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:35405-35686 Augustus predicted protein sequence Tomato scaffold862_contigs=2~35405-35686 DUF4510 PF14971.1 g46657.t1 - 0.12 12.5 0.4 0.16 12.1 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4510) | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:68823-71574 Augustus predicted protein sequence Tomato scaffold1484_contigs=2~68823-71574 DUF2914 PF11141.3 g22286.t1 - 0.59 9.7 4 1.8 8.1 1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2914) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:354240-354650 Augustus predicted protein sequence Tomato scaffold825_contigs=10~354240-354650 Androgen_recep PF02166.11 g51054.t1 - 0.092 11.5 0.1 0.092 11.5 0.1 1 1 0 0 1 1 1 0 Androgen receptor | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:131051-131302 Augustus predicted protein sequence Tomato scaffold1605_contigs=5~131051-131302 DUF1215 PF06744.7 g80505.t1 - 0.089 12.4 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1215) | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:61155-61397 Augustus predicted protein sequence Tomato scaffold2712_contigs=5~61155-61397 DBD_Tnp_Mut PF03108.10 g37252.t1 - 0.000000021 33.5 0.1 0.000000033 32.9 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:60765-61550 Augustus predicted protein sequence Tomato scaffold1216_contigs=10~60765-61550 ZipA_C PF04354.8 g42054.t1 - 0.002 17.5 0 0.42 10 0 2.2 1 1 0 2 2 2 2 ZipA, C-terminal FtsZ-binding domain | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:317505-321037 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~317505-321037 TMF_DNA_bd PF12329.3 g37434.t1 - 0.013 15.3 1.1 0.025 14.3 0.7 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:236287-236610 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~236287-236610 VGCC_beta4Aa_N PF12052.3 g33516.t1 - 0.0031 17.3 1.6 0.004 16.9 0.2 1.9 2 0 0 2 2 2 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:93724-94227 Augustus predicted protein sequence Tomato scaffold1132_contigs=4~93724-94227 MCD PF05292.6 g44582.t1 - 0.028 13.1 0 0.046 12.4 0 1.3 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:264652-265832 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~264652-265832 ATHILA PF03078.10 g54802.t1 - 0.019 13.5 0.8 0.02 13.5 0.6 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:97596-97856 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~97596-97856 HCV_NS5a PF01506.14 g50576.t1 - 0.031 13.9 1.2 4.8 6.9 0.2 2.7 2 0 0 2 2 2 0 Hepatitis C virus non-structural 5a protein membrane anchor | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:68497-70735 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~68497-70735 DUF3921 PF13060.1 g56476.t1 - 0.12 12.2 0.7 1.2 9 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3921) | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:73872-74789 Augustus predicted protein sequence Tomato scaffold1809_contigs=8~73872-74789 Pex14_N PF04695.8 g31181.t1 - 0.53 10.3 3.2 0.78 9.7 0.2 2.2 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:189677-190577 Augustus predicted protein sequence Tomato scaffold1064_contigs=7~189677-190577 zinc-ribbons_6 PF07191.7 g66210.t1 - 0.17 11.7 2.2 0.25 11.1 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbons | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:133890-134232 Augustus predicted protein sequence Tomato scaffold2154_contigs=6~133890-134232 zf-BED PF02892.10 g55588.t1 - 0.0018 18 1.9 0.0043 16.7 1.3 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1751_contigs=5, transcript_loc=scaffold1751_contigs=5:58519-59467 Augustus predicted protein sequence Tomato scaffold1751_contigs=5~58519-59467 DBD_Tnp_Mut PF03108.10 g40535.t1 - 3.1E-010 39.4 0.1 5.1E-010 38.7 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:836-1114 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~836-1114 Pollen_Ole_e_I PF01190.12 g40858.t1 - 0.0051 16.6 0.3 0.0068 16.2 0.2 1.2 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:588770-589219 Augustus predicted protein sequence Tomato scaffold1310_contigs=21~588770-589219 DUF4106 PF13388.1 g21373.t1 - 7.6 5.3 10.1 3.6 6.4 0.5 2 2 0 0 2 2 2 0 Protein of unknown function (DUF4106) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:46415-47833 Augustus predicted protein sequence Tomato scaffold798_contigs=6~46415-47833 RE_SinI PF09570.5 g60670.t1 - 0.0097 14.9 0 0.01 14.8 0 1 1 0 0 1 1 1 1 SinI restriction endonuclease | Ref_seq=scaffold1957_contigs=3, transcript_loc=scaffold1957_contigs=3:20528-20827 Augustus predicted protein sequence Tomato scaffold1957_contigs=3~20528-20827 Latarcin PF10279.4 g4844.t1 - 0.12 12.6 0.9 0.14 12.3 0.6 1.2 1 0 0 1 1 1 0 Latarcin precursor | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:32680-32904 Augustus predicted protein sequence Tomato scaffold309_contigs=4~32680-32904 Adenylsucc_synt PF00709.16 g2570.t1 - 0.12 11 0 0.17 10.5 0 1.3 1 0 0 1 1 1 0 Adenylosuccinate synthetase | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:10784-11230 Augustus predicted protein sequence Tomato scaffold245_contigs=3~10784-11230 MYT1 PF08474.6 g12501.t1 - 0.048 13.1 0.7 0.7 9.3 0.1 2.1 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:99638-100039 Augustus predicted protein sequence Tomato scaffold556_contigs=11~99638-100039 Mannosyl_trans2 PF04188.8 g77959.t1 - 0.099 11.5 0 0.13 11.1 0 1.1 1 0 0 1 1 1 0 Mannosyltransferase (PIG-V)) | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:62414-64158 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~62414-64158 DUF4172 PF13776.1 g46476.t1 - 0.069 13.2 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:238651-238968 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~238651-238968 PPR_2 PF13041.1 g74721.t1 - 0.00014 21.7 0 0.00028 20.8 0 1.5 1 0 0 1 1 1 1 PPR repeat family | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:584480-584859 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~584480-584859 gag-asp_proteas PF13975.1 g39877.t1 - 0.059 13.1 0 1.8 8.4 0 2.1 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:189770-190072 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~189770-190072 IBV_3A PF03617.8 g26882.t1 - 0.13 12 0.7 0.23 11.2 0.5 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:292937-294505 Augustus predicted protein sequence Tomato scaffold961_contigs=8~292937-294505 FlxA PF14282.1 g32135.t1 - 0.02 14.7 0.8 0.041 13.8 0.4 1.6 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:498075-498605 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~498075-498605 PetN PF03742.9 g29726.t1 - 1.1 8.9 3.6 7.5 6.2 0.1 2.9 3 0 0 3 3 3 0 PetN | Ref_seq=scaffold1032_contigs=3, transcript_loc=scaffold1032_contigs=3:59575-59862 Augustus predicted protein sequence Tomato scaffold1032_contigs=3~59575-59862 Retrotrans_gag PF03732.12 g19574.t1 - 0.0092 16 0.2 0.012 15.6 0.1 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:82871-85326 Augustus predicted protein sequence Tomato scaffold756_contigs=8~82871-85326 ATHILA PF03078.10 g40332.t1 - 0.00000026 29.6 0 0.0000081 24.6 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:179222-179839 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~179222-179839 DUF4219 PF13961.1 g76460.t1 - 0.00003 23.3 1.6 0.000041 22.8 0.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:132205-132495 Augustus predicted protein sequence Tomato scaffold2628_contigs=7~132205-132495 DUF1857 PF08982.6 g47457.t1 - 0.081 12.5 0 0.12 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1857) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:569-5581 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~569-5581 CwfJ_C_2 PF04676.9 g48362.t1 - 0.053 14 0 0.12 12.8 0 1.5 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 2 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:121241-123895 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~121241-123895 DUF3593 PF12159.3 g69724.t1 - 5.3 6.8 6.6 11 5.8 4.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3593) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:565073-565609 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~565073-565609 DUF1344 PF07076.6 g16281.t1 - 0.3 10.6 1.5 6.3 6.4 0.1 3 2 1 1 3 3 3 0 Protein of unknown function (DUF1344) | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:23300-26627 Augustus predicted protein sequence Tomato scaffold668_contigs=10~23300-26627 GAF_3 PF13492.1 g56259.t1 - 0.00031 20.8 0.1 0.2 11.7 0 2.2 2 0 0 2 2 2 2 GAF domain | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:92873-93394 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~92873-93394 Phage_TAC PF06222.6 g86087.t1 - 0.15 11.5 0 0.2 11.1 0 1.2 1 0 0 1 1 1 0 Phage tail assembly chaperone | Ref_seq=scaffold2836_contigs=1, transcript_loc=scaffold2836_contigs=1:10842-13035 Augustus predicted protein sequence Tomato scaffold2836_contigs=1~10842-13035 RinB PF06116.7 g69065.t1 - 0.44 10.2 11.5 2.1 8 1.1 2.6 2 0 0 2 2 2 0 Transcriptional activator RinB | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:51467-52557 Augustus predicted protein sequence Tomato scaffold2251_contigs=17~51467-52557 BAT2_N PF07001.6 g55071.t1 - 0.07 13.4 0.4 0.089 13.1 0.2 1.2 1 0 0 1 1 1 0 BAT2 N-terminus | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:86103-86560 Augustus predicted protein sequence Tomato scaffold1736_contigs=8~86103-86560 Bd3614-deam PF14439.1 g76747.t1 - 0.11 12.3 0.1 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Bd3614-like deaminase | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:574529-574762 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~574529-574762 DUF1985 PF09331.6 g70120.t1 - 0.01 15.6 0 0.015 15 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:109223-111655 Augustus predicted protein sequence Tomato scaffold2325_contigs=7~109223-111655 YdjO PF14169.1 g42172.t1 - 0.0027 17.1 0.7 0.0042 16.4 0.5 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:243964-244308 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~243964-244308 Mpp10 PF04006.7 g57754.t1 - 1.8 6.8 16.7 2.1 6.5 11.6 1.1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:529983-530375 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~529983-530375 Glypican PF01153.14 g10701.t1 - 0.71 8.4 2.9 0.66 8.5 2 1.2 1 0 0 1 1 1 0 Glypican | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:300150-300768 Augustus predicted protein sequence Tomato scaffold503_contigs=7~300150-300768 Alveol-reg_P311 PF11092.3 g50199.t1 - 0.027 14.4 5.1 12 5.9 0.1 4 1 1 3 4 4 4 0 Neuronal protein 3.1 (p311) | Ref_seq=scaffold1558_contigs=4, transcript_loc=scaffold1558_contigs=4:15145-16058 Augustus predicted protein sequence Tomato scaffold1558_contigs=4~15145-16058 CT47 PF15623.1 g38677.t1 - 0.67 9.6 19.9 1.3 8.6 2 2 1 1 1 2 2 2 0 Cancer/testis gene family 47 | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:86804-88267 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~86804-88267 GRP PF07172.6 g57833.t1 - 0.00000012 32 33.6 0.000024 24.7 23.3 2.1 1 1 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:39050-40112 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~39050-40112 Cwf_Cwc_15 PF04889.7 g14037.t1 - 0.15 11.7 4.8 0.19 11.4 3.3 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:285637-286143 Augustus predicted protein sequence Tomato scaffold583_contigs=2~285637-286143 zf-CCHC PF00098.18 g7376.t1 - 0.00017 21.3 1 0.00027 20.7 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:94771-98120 Augustus predicted protein sequence Tomato scaffold395_contigs=7~94771-98120 2OG-FeII_Oxy_5 PF13759.1 g31608.t1 - 0.096 12.9 0 0.36 11.1 0 1.8 2 0 0 2 2 2 0 Putative 2OG-Fe(II) oxygenase | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:24959-25369 Augustus predicted protein sequence Tomato scaffold1081_contigs=4~24959-25369 Gag_p15 PF08723.5 g22244.t1 - 0.096 12.6 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 Gag protein p15 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:171552-174437 Augustus predicted protein sequence Tomato scaffold825_contigs=10~171552-174437 WbqC PF08889.6 g18968.t1 - 0.024 14 1.1 0.031 13.7 0.8 1.1 1 0 0 1 1 1 0 WbqC-like protein family | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:18024-18758 Augustus predicted protein sequence Tomato scaffold740_contigs=1~18024-18758 CBM_2 PF00553.14 g77025.t1 - 0.0095 15.9 0 6 6.9 0 2.1 2 0 0 2 2 2 2 Cellulose binding domain | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:87118-87810 Augustus predicted protein sequence Tomato scaffold2644_contigs=21~87118-87810 RDD PF06271.7 g67708.t1 - 0.086 12.7 0.4 0.12 12.2 0.3 1.2 1 0 0 1 1 1 0 RDD family | Ref_seq=scaffold2188_contigs=14, transcript_loc=scaffold2188_contigs=14:222444-223588 Augustus predicted protein sequence Tomato scaffold2188_contigs=14~222444-223588 HC2 PF07382.6 g23279.t1 - 0.033 14 14 0.05 13.4 9.7 1.2 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:19538-20181 Augustus predicted protein sequence Tomato scaffold855_contigs=1~19538-20181 DUF2039 PF10217.4 g27832.t1 - 1.4 8.9 5.4 3.6 7.6 3.7 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) | Ref_seq=scaffold984_contigs=3, transcript_loc=scaffold984_contigs=3:48713-49006 Augustus predicted protein sequence Tomato scaffold984_contigs=3~48713-49006 DUF2651 PF10852.3 g42928.t1 - 0.0097 16.2 0.3 8.8 6.7 0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2651) | Ref_seq=scaffold1376_contigs=1, transcript_loc=scaffold1376_contigs=1:1-3993 Augustus predicted protein sequence Tomato scaffold1376_contigs=1~1-3993 OAD_gamma PF04277.8 g18922.t1 - 0.31 11.4 1.4 0.73 10.2 0.5 1.9 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:14178-15416 Augustus predicted protein sequence Tomato scaffold738_contigs=9~14178-15416 SLD3 PF08639.5 g63344.t1 - 0.027 13.1 4.9 0.031 12.9 3.4 1.2 1 0 0 1 1 1 0 DNA replication regulator SLD3 | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:341780-342370 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~341780-342370 Daxx PF03344.10 g50315.t1 - 7.7 4.8 26 8.1 4.7 18 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:38439-38908 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~38439-38908 Lon_2 PF13337.1 g42107.t1 - 0.0084 14.5 0.1 0.013 13.9 0.1 1.2 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease | Ref_seq=scaffold1347_contigs=2, transcript_loc=scaffold1347_contigs=2:1478-2183 Augustus predicted protein sequence Tomato scaffold1347_contigs=2~1478-2183 Allexi_40kDa PF05549.6 g64131.t1 - 0.13 11.4 0.6 8 5.6 0 2 1 1 1 2 2 2 0 Allexivirus 40kDa protein | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:194299-195146 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~194299-195146 UCR_6-4kD PF08997.5 g35666.t1 - 1.4 8.6 4.8 4.2 7.1 2.8 2.1 1 1 1 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein | Ref_seq=scaffold1182_contigs=8, transcript_loc=scaffold1182_contigs=8:5489-5788 Augustus predicted protein sequence Tomato scaffold1182_contigs=8~5489-5788 ATHILA PF03078.10 g86617.t1 - 0.036 12.6 0.3 0.053 12 0.2 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:38243-41398 Augustus predicted protein sequence Tomato scaffold2876_contigs=1~38243-41398 NAM-associated PF14303.1 g44129.t1 - 0.067 13.5 1.5 0.08 13.2 1 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:243470-243736 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~243470-243736 UBN2 PF14223.1 g71647.t1 - 0.013 15.2 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:188257-189600 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~188257-189600 Cwf_Cwc_15 PF04889.7 g61722.t1 - 0.11 12.2 3.8 0.17 11.5 2.6 1.4 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:242273-244561 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~242273-244561 MHCassoc_trimer PF08831.5 g20326.t1 - 0.081 12.7 0.6 0.15 11.8 0.4 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:48213-48581 Augustus predicted protein sequence Tomato scaffold773_contigs=6~48213-48581 Daxx PF03344.10 g52489.t1 - 0.48 8.8 14.5 0.58 8.5 10 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:193024-195235 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~193024-195235 DUF16 PF01519.11 g45214.t1 - 0.059 13.5 0 0.1 12.8 0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:415564-416332 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~415564-416332 CCDC-167 PF15188.1 g13317.t1 - 0.013 15.4 0.6 0.018 14.9 0.4 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold571_contigs=4, transcript_loc=scaffold571_contigs=4:236873-237190 Augustus predicted protein sequence Tomato scaffold571_contigs=4~236873-237190 GRA6 PF05084.8 g54960.t1 - 0.058 12.9 0.3 0.066 12.7 0.2 1 1 0 0 1 1 1 0 Granule antigen protein (GRA6) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:293367-293736 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~293367-293736 Tropomyosin PF00261.15 g70697.t1 - 0.0013 17.9 5.9 0.0021 17.2 4.1 1.3 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:22233-22931 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~22233-22931 DUF2462 PF09495.5 g49111.t1 - 0.2 12.4 2.3 0.33 11.6 1.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2462) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:56567-57189 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~56567-57189 Ribosomal_L15e PF00827.12 g46803.t1 - 0.014 14.9 1.9 0.017 14.6 1.3 1.1 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:83761-84201 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~83761-84201 RVT_2 PF07727.9 g68174.t1 - 0.00038 19.4 0 0.00061 18.8 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:47086-51526 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~47086-51526 Gag_p12 PF01141.13 g24192.t1 - 0.025 14.7 0.2 0.036 14.1 0.1 1.2 1 0 0 1 1 1 0 Gag polyprotein, inner coat protein p12 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:574909-576172 Augustus predicted protein sequence Tomato scaffold876_contigs=13~574909-576172 Mpp10 PF04006.7 g63154.t1 - 0.66 8.2 19.9 0.81 7.9 13.8 1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:347053-347786 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~347053-347786 Pox_A_type_inc PF04508.7 g30351.t1 - 0.0048 16.5 0.1 0.0081 15.8 0.1 1.4 1 0 0 1 1 1 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:171048-171978 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~171048-171978 DUF2275 PF10039.4 g70026.t1 - 0.071 13 0 0.1 12.4 0 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2275) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:270186-270791 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~270186-270791 GSH_synth_ATP PF03917.12 g86055.t1 - 0.14 10.6 0.1 0.16 10.5 0.1 1 1 0 0 1 1 1 0 Eukaryotic glutathione synthase, ATP binding domain | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:40462-41013 Augustus predicted protein sequence Tomato scaffold2834_contigs=1~40462-41013 ECM11 PF15463.1 g30035.t1 - 0.19 12 1.9 0.26 11.5 1.3 1.2 1 0 0 1 1 1 0 Extracellular mutant protein 11 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:312453-313441 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~312453-313441 DivIVA PF05103.8 g65377.t1 - 0.0069 16.4 2.6 0.012 15.6 1.8 1.3 1 0 0 1 1 1 1 DivIVA protein | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:334276-334818 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~334276-334818 DUF3847 PF12958.2 g75497.t1 - 0.072 12.8 0 0.16 11.7 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:15543-16646 Augustus predicted protein sequence Tomato scaffold2599_contigs=27~15543-16646 CALCOCO1 PF07888.6 g44990.t1 - 0.14 10.3 7.7 0.21 9.8 5.3 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:415287-420506 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~415287-420506 RAI1 PF08652.6 g14708.t1 - 0.024 14.3 0.1 1.9 8.3 0 2.2 2 0 0 2 2 2 0 RAI1 like PD-(D/E)XK nuclease | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:247229-247576 Augustus predicted protein sequence Tomato scaffold599_contigs=8~247229-247576 PAT1 PF09770.4 g18811.t1 - 4.8 5.2 10.7 5.2 5.1 7.4 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:580315-580671 Augustus predicted protein sequence Tomato scaffold731_contigs=13~580315-580671 PRESAN PF09687.5 g28264.t1 - 0.00037 20.5 6.3 0.00047 20.2 4.4 1 1 0 0 1 1 1 1 Plasmodium RESA N-terminal | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:85815-86174 Augustus predicted protein sequence Tomato scaffold994_contigs=5~85815-86174 Toxin_8 PF07365.7 g42802.t1 - 0.16 11.9 0.3 0.5 10.3 0.2 1.8 1 0 0 1 1 1 0 Alpha conotoxin precursor | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:53862-54548 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~53862-54548 DUF3693 PF12472.3 g6914.t1 - 0.032 13.8 0 0.045 13.3 0 1.2 1 0 0 1 1 1 0 Phage related protein | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:438156-438488 Augustus predicted protein sequence Tomato scaffold384_contigs=11~438156-438488 PetG PF02529.10 g36633.t1 - 0.055 12.9 0.1 1 8.9 0 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:159406-159759 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~159406-159759 MHCassoc_trimer PF08831.5 g50304.t1 - 0.059 13.2 0.7 0.1 12.4 0.5 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:25853-26474 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~25853-26474 DUF3146 PF11344.3 g76925.t1 - 0.012 15 0.2 0.73 9.3 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3146) | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:36279-38906 Augustus predicted protein sequence Tomato scaffold2642_contigs=12~36279-38906 DUF2525 PF10733.4 g50365.t1 - 0.26 11.1 1.5 11 5.9 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2525) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:192611-192952 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~192611-192952 Nop14 PF04147.7 g66321.t1 - 0.0039 15.1 12.1 0.0046 14.9 8.4 1.2 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:26827-29582 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~26827-29582 DUF4572 PF15139.1 g59633.t1 - 0.044 13.6 0.2 0.047 13.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4572) | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:30503-30709 Augustus predicted protein sequence Tomato scaffold1928_contigs=20~30503-30709 DUF1929 PF09118.6 g82149.t1 - 0.4 10.7 2.8 0.48 10.5 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1929) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:498531-498800 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~498531-498800 HTH_8 PF02954.14 g21230.t1 - 2.7 7.6 4.7 1.1 8.9 0.1 2.6 3 1 0 3 3 3 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:165275-165736 Augustus predicted protein sequence Tomato scaffold795_contigs=8~165275-165736 DUF1856 PF08983.5 g6357.t1 - 0.082 13 0.3 0.11 12.6 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1856) | Ref_seq=scaffold364_contigs=5, transcript_loc=scaffold364_contigs=5:34637-34897 Augustus predicted protein sequence Tomato scaffold364_contigs=5~34637-34897 DUF4143 PF13635.1 g70896.t1 - 0.0021 18.2 0 0.0032 17.6 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:514240-516544 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~514240-516544 DBD_Tnp_Mut PF03108.10 g10259.t1 - 0.0000022 27.1 1.3 0.000013 24.6 0.1 2.2 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold492_contigs=1, transcript_loc=scaffold492_contigs=1:19202-21779 Augustus predicted protein sequence Tomato scaffold492_contigs=1~19202-21779 YscW PF09619.5 g27823.t1 - 0.054 13.1 0.1 4 7.1 0 2.1 1 1 1 2 2 2 0 Type III secretion system lipoprotein chaperone (YscW) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:828686-828958 Augustus predicted protein sequence Tomato scaffold983_contigs=13~828686-828958 FliL PF03748.9 g81636.t1 - 0.058 13.3 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:331400-331888 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~331400-331888 CRA PF06589.6 g34655.t1 - 0.19 11 0.7 0.29 10.4 0.3 1.4 1 1 0 1 1 1 0 Circumsporozoite-related antigen (CRA) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:194095-194424 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~194095-194424 Glyco_hydro_65C PF03633.10 g567.t1 - 0.03 14.3 0 0.053 13.6 0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:81007-82853 Augustus predicted protein sequence Tomato scaffold53_contigs=4~81007-82853 DUF3677 PF12432.3 g51158.t1 - 0.078 13.4 0 0.14 12.5 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3677) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:72404-75529 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~72404-75529 Vpu PF00558.14 g68909.t1 - 0.069 12.7 1.3 0.12 11.9 0.9 1.3 1 0 0 1 1 1 0 Vpu protein | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:74576-77047 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~74576-77047 DUF4329 PF14220.1 g13706.t1 - 0.098 12.6 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4329) | Ref_seq=scaffold581_contigs=9, transcript_loc=scaffold581_contigs=9:27504-30357 Augustus predicted protein sequence Tomato scaffold581_contigs=9~27504-30357 U79_P34 PF03064.11 g19065.t1 - 3.7 6.9 11.4 0.79 9.1 0.5 2.2 2 0 0 2 2 2 0 HSV U79 / HCMV P34 | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:3711-5472 Augustus predicted protein sequence Tomato scaffold744_contigs=4~3711-5472 RNase_H2-Ydr279 PF09468.5 g9086.t1 - 0.12 11.4 3.7 0.14 11.3 2.6 1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:66758-68397 Augustus predicted protein sequence Tomato scaffold446_contigs=6~66758-68397 PRCC PF10253.4 g7353.t1 - 0.11 13.1 0.5 0.14 12.8 0.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold394_contigs=2, transcript_loc=scaffold394_contigs=2:6394-6633 Augustus predicted protein sequence Tomato scaffold394_contigs=2~6394-6633 DUF3753 PF12575.3 g58877.t1 - 0.52 10.1 1.1 45 3.9 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:49636-59002 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~49636-59002 DUF605 PF04652.11 g33389.t1 - 0.11 11.8 4.5 0.12 11.7 3.1 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:833991-835134 Augustus predicted protein sequence Tomato scaffold1126_contigs=23~833991-835134 Apt1 PF10351.4 g63213.t1 - 0.093 11.5 1.9 0.11 11.2 0 1.8 2 0 0 2 2 2 0 Golgi-body localisation protein domain | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:26280-27338 Augustus predicted protein sequence Tomato scaffold2032_contigs=5~26280-27338 DUF2866 PF11065.3 g14209.t1 - 0.00012 21.8 0.3 0.0002 21.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2866) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:351327-352878 Augustus predicted protein sequence Tomato scaffold586_contigs=6~351327-352878 DUF605 PF04652.11 g35910.t1 - 0.34 10.2 9.8 0.43 9.9 6.8 1.3 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:80144-81695 Augustus predicted protein sequence Tomato scaffold1185_contigs=5~80144-81695 RAM PF15320.1 g56823.t1 - 4.6 7.5 6.1 11 6.3 1.3 2.4 2 1 0 2 2 2 0 mRNA cap methylation, RNMT-activating mini protein | Ref_seq=scaffold1819_contigs=5, transcript_loc=scaffold1819_contigs=5:116938-118353 Augustus predicted protein sequence Tomato scaffold1819_contigs=5~116938-118353 zf-CCHC PF00098.18 g57565.t1 - 0.0017 18.1 0.3 0.0025 17.6 0.2 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:173061-173657 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~173061-173657 ATHILA PF03078.10 g69579.t1 - 0.00011 20.9 0 0.092 11.3 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:178463-179563 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~178463-179563 zf-CCHC PF00098.18 g34619.t1 - 0.00087 19.1 0.3 0.0014 18.4 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:75745-77103 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~75745-77103 gag_pre-integrs PF13976.1 g62343.t1 - 0.002 17.7 2.5 0.0051 16.4 1.6 1.9 1 1 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:84545-86484 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~84545-86484 CAP_N PF01213.14 g7615.t1 - 1.3 8.1 5.1 1.6 7.9 3.6 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:353143-353487 Augustus predicted protein sequence Tomato scaffold404_contigs=9~353143-353487 Mu-conotoxin PF05374.7 g81587.t1 - 0.043 13.5 3.5 0.083 12.6 2.4 1.4 1 0 0 1 1 1 0 Mu-Conotoxin | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:195247-201947 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~195247-201947 TadE PF07811.7 g6822.t1 - 0.0072 16.1 0 0.0098 15.7 0 1.2 1 0 0 1 1 1 1 TadE-like protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:93771-95289 Augustus predicted protein sequence Tomato scaffold383_contigs=3~93771-95289 YqcI_YcgG PF08892.6 g23302.t1 - 0.069 12.7 0.4 0.082 12.4 0.3 1.1 1 0 0 1 1 1 0 YqcI/YcgG family | Ref_seq=scaffold856_contigs=3, transcript_loc=scaffold856_contigs=3:74305-74610 Augustus predicted protein sequence Tomato scaffold856_contigs=3~74305-74610 AMIN PF11741.3 g42382.t1 - 0.0066 16.3 0 3.2 7.7 0 2 1 1 1 2 2 2 2 AMIN domain | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:84073-84522 Augustus predicted protein sequence Tomato scaffold1357_contigs=25~84073-84522 Augurin PF15187.1 g62740.t1 - 0.12 12.1 1.8 4.9 7 0.2 2.2 2 0 0 2 2 2 0 Oesophageal cancer-related gene 4 | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:611286-612343 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~611286-612343 bZIP_1 PF00170.16 g41222.t1 - 2.4 8.1 6.7 15 5.6 1.6 2.7 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:1867-2757 Augustus predicted protein sequence Tomato scaffold1328_contigs=9~1867-2757 DUF2664 PF10867.3 g39871.t1 - 0.014 15.9 1 0.033 14.8 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2664) | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:184962-186101 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~184962-186101 p47_phox_C PF08944.6 g49911.t1 - 0.09 12.9 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:596478-596822 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~596478-596822 DUF3584 PF12128.3 g15403.t1 - 0.0017 15.8 0.9 0.0019 15.6 0.6 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:389764-390306 Augustus predicted protein sequence Tomato scaffold624_contigs=9~389764-390306 QLQ PF08880.6 g86590.t1 - 4.1 6.8 6.4 1.4 8.3 0.1 3.3 3 1 0 3 3 3 0 QLQ | Ref_seq=scaffold2875_contigs=1, transcript_loc=scaffold2875_contigs=1:11765-12373 Augustus predicted protein sequence Tomato scaffold2875_contigs=1~11765-12373 DUF241 PF03087.9 g11381.t1 - 0.0057 16.1 1.3 0.0073 15.8 0.9 1.1 1 0 0 1 1 1 1 Arabidopsis protein of unknown function | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:463377-463983 Augustus predicted protein sequence Tomato scaffold523_contigs=15~463377-463983 SAS4 PF15460.1 g55279.t1 - 0.019 14.8 0.9 0.024 14.5 0.6 1.1 1 0 0 1 1 1 0 Something about silencing, SAS, complex subunit 4 | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:630331-631194 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~630331-631194 Virul_fac_BrkB PF03631.10 g87585.t1 - 0.008 15.5 0 2.8 7.2 0 2.5 3 0 0 3 3 3 2 Virulence factor BrkB | Ref_seq=scaffold3360_contigs=1, transcript_loc=scaffold3360_contigs=1:1-719 Augustus predicted protein sequence Tomato scaffold3360_contigs=1~1-719 DUF2509 PF10713.4 g87841.t1 - 0.048 13.4 0 0.057 13.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2509) | Ref_seq=scaffold4403_contigs=1, transcript_loc=scaffold4403_contigs=1:1-189 Augustus predicted protein sequence Tomato scaffold4403_contigs=1~1-189 Herpeto_peptide PF14409.1 g56113.t1 - 0.14 11.9 0 0.31 10.8 0 1.5 1 0 0 1 1 1 0 Ribosomally synthesized peptide in Herpetosiphon | Ref_seq=scaffold1787_contigs=9, transcript_loc=scaffold1787_contigs=9:9269-14916 Augustus predicted protein sequence Tomato scaffold1787_contigs=9~9269-14916 Trehalase PF01204.13 g47890.t1 - 0.028 13 3.7 0.035 12.7 2.6 1.1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:12139-12782 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~12139-12782 DASH_Dad4 PF08650.5 g62368.t1 - 0.31 10.9 2.7 0.41 10.5 0.3 2 2 0 0 2 2 2 0 DASH complex subunit Dad4 | Ref_seq=scaffold1989_contigs=5, transcript_loc=scaffold1989_contigs=5:101363-101728 Augustus predicted protein sequence Tomato scaffold1989_contigs=5~101363-101728 ATHILA PF03078.10 g38695.t1 - 0.0011 17.6 0 0.0013 17.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:56765-57535 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~56765-57535 RolB_RolC PF02027.12 g12702.t1 - 0.12 11.4 0 0.25 10.4 0 1.4 2 0 0 2 2 2 0 RolB/RolC glucosidase family | Ref_seq=scaffold557_contigs=11, transcript_loc=scaffold557_contigs=11:106147-106990 Augustus predicted protein sequence Tomato scaffold557_contigs=11~106147-106990 Nop14 PF04147.7 g86955.t1 - 1.7 6.4 12.6 1.5 6.6 8.8 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:13456-13725 Augustus predicted protein sequence Tomato scaffold2915_contigs=1~13456-13725 UBN2 PF14223.1 g20638.t1 - 0.0038 16.9 0 0.0056 16.4 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:95038-99264 Augustus predicted protein sequence Tomato scaffold777_contigs=4~95038-99264 DUF3397 PF11877.3 g21145.t1 - 0.21 11.6 3.3 0.44 10.5 2.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:10445-10906 Augustus predicted protein sequence Tomato scaffold794_contigs=4~10445-10906 Sugarporin_N PF11471.3 g29916.t1 - 0.076 12.6 0.5 0.13 11.9 0.3 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:266289-266810 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~266289-266810 LssY_C PF14067.1 g77051.t1 - 0.05 12.5 0 0.07 12.1 0 1.2 1 0 0 1 1 1 0 LssY C-terminus | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:39350-39787 Augustus predicted protein sequence Tomato scaffold2646_contigs=41~39350-39787 EBV-NA3 PF05009.7 g24726.t1 - 0.094 11.9 1.5 0.093 11.9 1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:215857-216093 Augustus predicted protein sequence Tomato scaffold893_contigs=2~215857-216093 Sigma_1s PF02454.11 g77070.t1 - 0.00089 19 0.3 0.39 10.4 0 2.4 1 1 1 2 2 2 2 Sigma 1s protein | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:29430-31579 Augustus predicted protein sequence Tomato scaffold2647_contigs=26~29430-31579 Vma12 PF11712.3 g85692.t1 - 0.051 13.2 0.1 0.062 13 0 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:71801-72097 Augustus predicted protein sequence Tomato scaffold2814_contigs=1~71801-72097 CI-B14_5a PF07347.7 g25717.t1 - 0.01 15.5 0.3 0.88 9.3 0.1 2.1 2 0 0 2 2 2 0 NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:304932-305771 Augustus predicted protein sequence Tomato scaffold930_contigs=4~304932-305771 Erv26 PF04148.8 g31308.t1 - 0.19 11 0.1 0.27 10.5 0.1 1.2 1 0 0 1 1 1 0 Transmembrane adaptor Erv26 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:461779-463135 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~461779-463135 Pol_alpha_B_N PF08418.5 g39873.t1 - 0.024 14.1 1.4 0.024 14.2 0.9 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:187386-187823 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~187386-187823 Mito_fiss_reg PF05308.6 g10811.t1 - 0.016 14.5 1 0.018 14.4 0.7 1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:186212-186460 Augustus predicted protein sequence Tomato scaffold507_contigs=4~186212-186460 Pentapeptide_4 PF13599.1 g17259.t1 - 0.057 13.2 0.2 0.4 10.5 0 2 2 0 0 2 2 2 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:140193-140657 Augustus predicted protein sequence Tomato scaffold701_contigs=5~140193-140657 PTPS PF01242.14 g50693.t1 - 0.12 12 0 0.16 11.6 0 1.3 1 1 0 1 1 1 0 6-pyruvoyl tetrahydropterin synthase | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:212511-213232 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~212511-213232 MHYT PF03707.11 g75311.t1 - 0.062 13.4 0.4 0.11 12.5 0.3 1.5 1 0 0 1 1 1 0 Bacterial signalling protein N terminal repeat | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:178851-180166 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~178851-180166 Borealin PF10512.4 g18807.t1 - 0.051 13.5 0.1 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 Cell division cycle-associated protein 8 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:569955-571058 Augustus predicted protein sequence Tomato scaffold731_contigs=13~569955-571058 Tachykinin PF02202.11 g83483.t1 - 2 8.3 0 2 8.3 0 2.7 3 0 0 3 3 3 0 Tachykinin family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:673277-673531 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~673277-673531 RVT_3 PF13456.1 g82092.t1 - 0.023 14.4 0 0.04 13.7 0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:183193-185149 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~183193-185149 DUF1627 PF07789.7 g74689.t1 - 0.11 12 0 0.11 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1627) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:402652-402852 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~402652-402852 Dermcidin PF15291.1 g49960.t1 - 0.047 13.8 2.9 0.076 13.2 0.1 2.6 2 1 0 3 3 3 0 Dermcidin, antibiotic peptide | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:774384-775466 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~774384-775466 Keratin_B2 PF01500.12 g8518.t1 - 0.1 12.4 0.7 0.12 12 0.5 1.3 1 1 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:94941-95322 Augustus predicted protein sequence Tomato scaffold428_contigs=8~94941-95322 TraT PF05818.7 g63590.t1 - 5.3 6.4 6.3 7.3 5.9 4.3 1.2 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:611062-611487 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~611062-611487 TAFH PF07531.9 g86249.t1 - 0.021 14.4 0.1 0.03 13.9 0 1.4 1 0 0 1 1 1 0 NHR1 homology to TAF | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:29389-30994 Augustus predicted protein sequence Tomato scaffold2846_contigs=1~29389-30994 DUF4276 PF14103.1 g2477.t1 - 0.0089 15.9 0.1 0.0089 15.9 0.1 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) | Ref_seq=scaffold238_contigs=5, transcript_loc=scaffold238_contigs=5:174867-175302 Augustus predicted protein sequence Tomato scaffold238_contigs=5~174867-175302 bZIP_2 PF07716.10 g47889.t1 - 3.9 7.3 7.9 26 4.7 0.3 3.6 3 1 1 4 4 4 0 Basic region leucine zipper | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:11230-11730 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~11230-11730 DUF1356 PF07092.7 g28807.t1 - 0.15 11.2 0.4 0.16 11 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:394746-395436 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~394746-395436 TMF_TATA_bd PF12325.3 g40085.t1 - 0.072 12.8 0.3 0.1 12.3 0.2 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:72782-75563 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~72782-75563 AvrRpt-cleavage PF05627.6 g69373.t1 - 0.0013 17.7 0.7 1.7 7.7 0 2.6 2 0 0 2 2 2 2 Cleavage site for pathogenic type III effector avirulence factor Avr | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:40633-43359 Augustus predicted protein sequence Tomato scaffold2272_contigs=16~40633-43359 Ephrin PF00812.12 g55373.t1 - 0.058 12.9 0.1 0.076 12.5 0.1 1.2 1 0 0 1 1 1 0 Ephrin | Ref_seq=scaffold1742_contigs=1, transcript_loc=scaffold1742_contigs=1:8838-9182 Augustus predicted protein sequence Tomato scaffold1742_contigs=1~8838-9182 RNase_H2-Ydr279 PF09468.5 g79794.t1 - 0.21 10.7 6.5 0.32 10.1 4.5 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:622983-624236 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~622983-624236 zf-BED PF02892.10 g9527.t1 - 0.0011 18.6 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:8480-10139 Augustus predicted protein sequence Tomato scaffold461_contigs=4~8480-10139 Nop14 PF04147.7 g53020.t1 - 0.002 16.1 4.5 0.002 16.1 3.1 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:86123-86635 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~86123-86635 AAA_27 PF13514.1 g30768.t1 - 0.00069 17.4 5.5 0.00079 17.2 3.8 1.1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:269202-269765 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~269202-269765 DUF4201 PF13870.1 g57206.t1 - 0.12 11.8 0.2 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:77583-85446 Augustus predicted protein sequence Tomato scaffold1829_contigs=9~77583-85446 Neuregulin PF02158.10 g30109.t1 - 0.0047 15.7 0.7 0.0057 15.4 0.5 1.1 1 0 0 1 1 1 1 Neuregulin family | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:12224-13069 Augustus predicted protein sequence Tomato scaffold1038_contigs=3~12224-13069 YycC PF14174.1 g4170.t1 - 0.0006 19.4 0.7 0.2 11.3 0.1 2.3 1 1 1 2 2 2 2 YycC-like protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:205665-206105 Augustus predicted protein sequence Tomato scaffold293_contigs=5~205665-206105 BPS PF08947.5 g87633.t1 - 0.027 14.1 0.3 54 3.5 0 3.2 3 0 0 3 3 3 0 BPS (Between PH and SH2) | Ref_seq=scaffold3483_contigs=1, transcript_loc=scaffold3483_contigs=1:1-2452 Augustus predicted protein sequence Tomato scaffold3483_contigs=1~1-2452 CENP-F_leu_zip PF10473.4 g18845.t1 - 0.046 13.5 2 0.14 12 1.4 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:701808-702191 Augustus predicted protein sequence Tomato scaffold731_contigs=13~701808-702191 Chromo PF00385.19 g67900.t1 - 0.0035 16.9 0.1 0.0044 16.6 0.1 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:184723-184986 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~184723-184986 CENP-F_leu_zip PF10473.4 g36563.t1 - 0.041 13.7 7.4 0.33 10.8 1.3 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:76276-79013 Augustus predicted protein sequence Tomato scaffold1204_contigs=5~76276-79013 zf-CCHC PF00098.18 g45133.t1 - 0.00037 20.2 1.6 0.00037 20.2 1.1 2.9 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:104294-104605 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~104294-104605 NifZ PF04319.8 g83576.t1 - 0.13 11.6 0.1 1.4 8.3 0 2.2 1 1 1 2 2 2 0 NifZ domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1006701-1010336 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1006701-1010336 DUF4164 PF13747.1 g48351.t1 - 0.019 15.1 1.7 0.029 14.4 0.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:82656-83310 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~82656-83310 FliO PF04347.8 g35848.t1 - 0.043 13.8 0.1 0.096 12.7 0 1.8 1 1 0 1 1 1 0 Flagellar biosynthesis protein, FliO | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:754838-755194 Augustus predicted protein sequence Tomato scaffold1183_contigs=24~754838-755194 RBD PF02196.10 g53056.t1 - 0.12 12.1 0 0.24 11.1 0 1.4 1 0 0 1 1 1 0 Raf-like Ras-binding domain | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:14715-17881 Augustus predicted protein sequence Tomato scaffold1674_contigs=9~14715-17881 Nop14 PF04147.7 g38261.t1 - 0.00016 19.8 10 0.00016 19.8 7 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:763651-765649 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~763651-765649 TAF1_subA PF14929.1 g65633.t1 - 0.057 11.8 0 0.057 11.8 0 1 1 0 0 1 1 1 0 TAF RNA Polymerase I subunit A | Ref_seq=scaffold2135_contigs=3, transcript_loc=scaffold2135_contigs=3:34947-35231 Augustus predicted protein sequence Tomato scaffold2135_contigs=3~34947-35231 MNSV_P7B PF06692.6 g59865.t1 - 0.087 12.6 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Melon necrotic spot virus P7B protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:25753-26407 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~25753-26407 RVT_3 PF13456.1 g33352.t1 - 0.026 14.2 0 0.036 13.8 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:607946-608221 Augustus predicted protein sequence Tomato scaffold1126_contigs=23~607946-608221 NTR PF01759.16 g77650.t1 - 0.018 14.6 0 0.029 13.9 0 1.3 1 0 0 1 1 1 0 UNC-6/NTR/C345C module | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:324697-327330 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~324697-327330 IQ PF00612.22 g71031.t1 - 0.0052 16.3 0.1 0.016 14.8 0.1 1.9 1 0 0 1 1 1 1 IQ calmodulin-binding motif | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:517680-523005 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~517680-523005 eIF3g PF12353.3 g5622.t1 - 0.0082 16 0.2 0.019 14.8 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:167924-168265 Augustus predicted protein sequence Tomato scaffold334_contigs=13~167924-168265 DUF4171 PF13775.1 g64174.t1 - 2.1 8.5 4.6 5.3 7.2 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4171) | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:349993-350508 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~349993-350508 Cellulose_synt PF03552.9 g78514.t1 - 6.1 5 6.7 10 4.2 4.6 1.3 1 0 0 1 1 1 0 Cellulose synthase | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:217650-218819 Augustus predicted protein sequence Tomato scaffold2670_contigs=15~217650-218819 DUF4283 PF14111.1 g32511.t1 - 0.0059 15.6 0 0.012 14.7 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:576436-578340 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~576436-578340 DUF3008 PF11450.3 g26822.t1 - 0.0057 16.7 1.9 0.0057 16.7 1.3 1.5 2 0 0 2 2 2 1 Protein of unknwon function (DUF3008) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:133881-134129 Augustus predicted protein sequence Tomato scaffold961_contigs=8~133881-134129 Cortex-I_coil PF09304.5 g24533.t1 - 0.055 13.5 5.9 0.033 14.2 2.3 1.8 1 1 1 2 2 2 0 Cortexillin I, coiled coil | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:47698-48269 Augustus predicted protein sequence Tomato scaffold886_contigs=4~47698-48269 DUF3374 PF11854.3 g55196.t1 - 0.17 10.1 0 0.17 10.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3374) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:270702-271734 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~270702-271734 DUF1832 PF08870.6 g79712.t1 - 0.12 12 0 0.18 11.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1832) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:272805-273269 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~272805-273269 DUF3276 PF11680.3 g32458.t1 - 0.15 11.8 3.2 0.19 11.5 0.1 2 1 1 1 2 2 2 0 Protein of unknown function (DUF3276) | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:365918-370790 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~365918-370790 cwf21 PF08312.7 g21334.t1 - 0.081 12.7 0 0.088 12.6 0 1.3 1 1 0 1 1 1 0 cwf21 domain | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:306135-306532 Augustus predicted protein sequence Tomato scaffold797_contigs=11~306135-306532 Cortex-I_coil PF09304.5 g85037.t1 - 0.0034 17.3 0.7 0.0041 17.1 0.5 1.2 1 0 0 1 1 1 1 Cortexillin I, coiled coil | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:69960-70229 Augustus predicted protein sequence Tomato scaffold2788_contigs=1~69960-70229 bZIP_2 PF07716.10 g21185.t1 - 0.0017 18 4.5 0.0017 18 3.1 2.7 2 0 0 2 2 2 1 Basic region leucine zipper | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:24176-25821 Augustus predicted protein sequence Tomato scaffold795_contigs=8~24176-25821 L27_1 PF09058.5 g69971.t1 - 0.043 13.7 0 0.28 11 0 2.3 3 0 0 3 3 3 0 L27_1 | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:57277-58812 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~57277-58812 DUF3481 PF11980.3 g62376.t1 - 0.03 14.1 0 0.04 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3481) | Ref_seq=scaffold1989_contigs=5, transcript_loc=scaffold1989_contigs=5:166770-167141 Augustus predicted protein sequence Tomato scaffold1989_contigs=5~166770-167141 CagX PF03524.10 g60829.t1 - 0.63 9.2 2.6 0.82 8.9 1.7 1.3 1 1 0 1 1 1 0 Conjugal transfer protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:488630-489551 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~488630-489551 Spore_coat_CotO PF14153.1 g71764.t1 - 0.11 11.9 12.7 0.17 11.3 8.8 1.4 1 0 0 1 1 1 0 Spore coat protein CotO | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:175094-178453 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~175094-178453 IFP_35_N PF07334.8 g34481.t1 - 0.057 13.4 1.1 0.057 13.4 0.7 1.7 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:101212-101610 Augustus predicted protein sequence Tomato scaffold1151_contigs=2~101212-101610 ATHILA PF03078.10 g18829.t1 - 0.0000055 25.2 0 0.0000062 25 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:664595-664822 Augustus predicted protein sequence Tomato scaffold731_contigs=13~664595-664822 UBN2_3 PF14244.1 g77092.t1 - 0.00000003 33.3 0.4 0.000000041 32.9 0.2 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:131490-131816 Augustus predicted protein sequence Tomato scaffold2647_contigs=26~131490-131816 FBA_1 PF07734.8 g41939.t1 - 0.00032 20.4 0 0.0004 20.1 0 1.1 1 0 0 1 1 1 1 F-box associated | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:389597-389944 Augustus predicted protein sequence Tomato scaffold1345_contigs=14~389597-389944 rve PF00665.21 g44446.t1 - 0.0000074 26 0 0.000014 25.1 0 1.5 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:249837-251030 Augustus predicted protein sequence Tomato scaffold1429_contigs=14~249837-251030 AA_permease_N PF08403.5 g1826.t1 - 0.13 11.6 0.2 13 5.2 0.1 2.5 2 1 0 2 2 2 0 Amino acid permease N-terminal | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:169544-170960 Augustus predicted protein sequence Tomato scaffold217_contigs=3~169544-170960 SURF2 PF05477.6 g12521.t1 - 0.29 10.2 6 0.3 10.2 4.1 1.1 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:142847-143092 Augustus predicted protein sequence Tomato scaffold556_contigs=11~142847-143092 DBD_Tnp_Mut PF03108.10 g70306.t1 - 2.1E-009 36.8 0.2 4.4E-009 35.7 0.1 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:424438-425091 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~424438-425091 CENP-O PF09496.5 g26860.t1 - 0.0045 17.1 0.8 0.0077 16.4 0.6 1.4 1 1 0 1 1 1 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:224588-224902 Augustus predicted protein sequence Tomato scaffold961_contigs=8~224588-224902 DUF4252 PF14060.1 g48913.t1 - 0.13 11.7 0.1 0.69 9.4 0.1 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4252) | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:266275-268114 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~266275-268114 Mad3_BUB1_I PF08311.7 g35926.t1 - 0.061 13.1 0 0.1 12.3 0 1.3 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:118761-120419 Augustus predicted protein sequence Tomato scaffold1185_contigs=5~118761-120419 NAM-associated PF14303.1 g84877.t1 - 0.000041 23.9 9 0.000056 23.5 6.3 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2783_contigs=1, transcript_loc=scaffold2783_contigs=1:19341-19913 Augustus predicted protein sequence Tomato scaffold2783_contigs=1~19341-19913 zf-RVT PF13966.1 g59532.t1 - 0.072 13.4 0.1 0.094 13 0 1.3 1 0 0 1 1 1 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:129617-129904 Augustus predicted protein sequence Tomato scaffold1926_contigs=8~129617-129904 N36 PF11438.3 g66348.t1 - 0.017 14.6 0.2 7.2 6.2 0 2.4 2 0 0 2 2 2 0 36-mer N-terminal peptide of the N protein (N36) | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:107059-114387 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~107059-114387 DCR PF14047.1 g24698.t1 - 0.29 11.4 0.1 0.29 11.4 0 1.6 2 0 0 2 2 2 0 Dppa2/4 conserved region | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:146746-147265 Augustus predicted protein sequence Tomato scaffold893_contigs=2~146746-147265 PBP1_TM PF14812.1 g11224.t1 - 5.7 7.3 7 8 6.8 4.9 1.6 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold522_contigs=18, transcript_loc=scaffold522_contigs=18:88122-88424 Augustus predicted protein sequence Tomato scaffold522_contigs=18~88122-88424 BLOC1_2 PF10046.4 g29432.t1 - 0.04 14 0.3 0.095 12.8 0.1 1.4 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:165985-166266 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~165985-166266 AMP-binding_C PF13193.1 g87507.t1 - 0.000077 23.5 0.5 0.014 16.2 0 2.9 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain | Ref_seq=scaffold3194_contigs=1, transcript_loc=scaffold3194_contigs=1:2727-4277 Augustus predicted protein sequence Tomato scaffold3194_contigs=1~2727-4277 WT1 PF02165.10 g66314.t1 - 0.022 13.8 0.1 0.025 13.6 0 1 1 0 0 1 1 1 0 Wilm's tumour protein | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:11931-12212 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~11931-12212 DUF2594 PF10769.4 g38055.t1 - 0.025 14.6 0.1 0.04 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:94419-94724 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~94419-94724 CHDCT2 PF08074.6 g46089.t1 - 0.025 14.3 0 0.028 14.1 0 1.1 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:31768-32055 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~31768-32055 Peroxin-13_N PF04088.8 g34282.t1 - 1.3 8.9 5.5 0.2 11.5 0.5 1.8 1 1 1 2 2 2 0 Peroxin 13, N-terminal region | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:377109-377471 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~377109-377471 UPF0547 PF10571.4 g5878.t1 - 0.084 12.5 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:19048-24538 Augustus predicted protein sequence Tomato scaffold344_contigs=14~19048-24538 zf-CCHC PF00098.18 g77519.t1 - 0.0000037 26.6 0.8 0.0000051 26.1 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:265260-265505 Augustus predicted protein sequence Tomato scaffold2657_contigs=15~265260-265505 gag-asp_proteas PF13975.1 g13607.t1 - 0.082 12.7 0 0.23 11.2 0 1.7 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:113805-114416 Augustus predicted protein sequence Tomato scaffold578_contigs=5~113805-114416 DUF1179 PF06678.6 g79826.t1 - 0.035 14.3 0.1 0.04 14.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1179) | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:160265-160753 Augustus predicted protein sequence Tomato scaffold2702_contigs=9~160265-160753 DUF4549 PF15082.1 g16167.t1 - 0.053 13.1 0 12 5.5 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4549) | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:36642-37145 Augustus predicted protein sequence Tomato scaffold656_contigs=9~36642-37145 DBD_Tnp_Mut PF03108.10 g34415.t1 - 0.021 14.3 0 0.034 13.6 0 1.3 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:17062-18300 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~17062-18300 Pneumo_phosprot PF02478.11 g8863.t1 - 1.1 8.7 4.4 0.81 9.1 2.1 1.5 1 1 1 2 2 2 0 Pneumovirus phosphoprotein | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:27536-28587 Augustus predicted protein sequence Tomato scaffold442_contigs=14~27536-28587 zf-CCHC PF00098.18 g3011.t1 - 0.000055 22.8 4.5 0.000082 22.3 0.7 2.5 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:344836-345111 Augustus predicted protein sequence Tomato scaffold257_contigs=2~344836-345111 XK-related PF09815.4 g80858.t1 - 0.055 12.4 0.2 0.063 12.2 0.2 1 1 0 0 1 1 1 0 XK-related protein | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:106062-106870 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~106062-106870 PsbP PF01789.11 g21962.t1 - 0.059 12.8 0 0.11 11.9 0 1.4 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:384435-385628 Augustus predicted protein sequence Tomato scaffold817_contigs=11~384435-385628 UBN2 PF14223.1 g5291.t1 - 0.0000026 27.1 1.2 0.035 13.9 0.1 2.7 1 1 2 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:22894-23741 Augustus predicted protein sequence Tomato scaffold322_contigs=4~22894-23741 Rep_3 PF01051.16 g18783.t1 - 0.088 12.3 0 0.1 12.1 0 1 1 0 0 1 1 1 0 Initiator Replication protein | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:460648-460923 Augustus predicted protein sequence Tomato scaffold731_contigs=13~460648-460923 tRNA-synt_1 PF00133.17 g67495.t1 - 0.11 10.4 0 0.14 10.1 0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:67723-68215 Augustus predicted protein sequence Tomato scaffold2185_contigs=9~67723-68215 HTH_Crp_2 PF13545.1 g49078.t1 - 0.11 12.3 0.2 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:36740-37665 Augustus predicted protein sequence Tomato scaffold1525_contigs=4~36740-37665 RVP_2 PF08284.6 g26021.t1 - 0.0011 18.8 0 0.0016 18.3 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:179489-180798 Augustus predicted protein sequence Tomato scaffold942_contigs=10~179489-180798 DUF4140 PF13600.1 g28512.t1 - 0.0082 16.5 1.8 0.014 15.8 1.1 1.5 1 1 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:202855-203883 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~202855-203883 Bap31 PF05529.7 g61624.t1 - 0.38 10.1 2.5 0.65 9.4 1.7 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:27470-29248 Augustus predicted protein sequence Tomato scaffold1972_contigs=6~27470-29248 Ribosomal_S28e PF01200.13 g62896.t1 - 0.57 9.9 2.4 1.5 8.6 0.1 2.5 3 1 0 3 3 3 0 Ribosomal protein S28e | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:182158-182607 Augustus predicted protein sequence Tomato scaffold2012_contigs=13~182158-182607 G6PD_C PF02781.11 g46076.t1 - 0.025 13.4 0 0.028 13.2 0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, C-terminal domain | Ref_seq=scaffold1474_contigs=9, transcript_loc=scaffold1474_contigs=9:103599-104185 Augustus predicted protein sequence Tomato scaffold1474_contigs=9~103599-104185 LZ_Tnp_IS66 PF13007.2 g79849.t1 - 0.042 14.4 2.5 0.042 14.4 1.7 1.7 2 0 0 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:16802-17104 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~16802-17104 Delta_lysin PF05372.6 g70690.t1 - 0.00098 18.4 4.6 0.47 9.8 0.3 2.5 2 0 0 2 2 2 2 Delta lysin family | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:245784-246670 Augustus predicted protein sequence Tomato scaffold2345_contigs=7~245784-246670 NUT_C PF12882.2 g78686.t1 - 0.14 11.7 0 2.2 7.8 0 2.1 1 1 1 2 2 2 0 NUT protein C terminal | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:89065-91436 Augustus predicted protein sequence Tomato scaffold2674_contigs=11~89065-91436 Toxin_51 PF15531.1 g70712.t1 - 0.00016 21.4 0.6 0.37 10.6 0.1 2.1 2 0 0 2 2 2 2 Putative toxin 51 | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:81182-81656 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~81182-81656 Peptidase_C48 PF02902.14 g17010.t1 - 0.0021 17.6 0 0.0022 17.6 0 1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold690_contigs=9, transcript_loc=scaffold690_contigs=9:159081-161422 Augustus predicted protein sequence Tomato scaffold690_contigs=9~159081-161422 RVT_3 PF13456.1 g27039.t1 - 0.0024 17.5 0 0.0031 17.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:329491-329730 Augustus predicted protein sequence Tomato scaffold965_contigs=10~329491-329730 Rav1p_C PF12234.3 g37590.t1 - 0.1 10.7 0 0.1 10.7 0 1.1 1 0 0 1 1 1 0 RAVE protein 1 C terminal | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:277123-278803 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~277123-278803 EIID-AGA PF03613.9 g5125.t1 - 1.5 7.6 4.2 2.2 7.1 2.9 1.2 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:441399-442330 Augustus predicted protein sequence Tomato scaffold315_contigs=11~441399-442330 Peptidase_S49_N PF08496.5 g537.t1 - 0.87 9.3 8.7 0.94 9.2 6 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:43012-43768 Augustus predicted protein sequence Tomato scaffold52_contigs=2~43012-43768 Drf_FH1 PF06346.7 g47140.t1 - 0.053 13 0.6 0.062 12.8 0.4 1.2 1 0 0 1 1 1 0 Formin Homology Region 1 | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:1181-1582 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~1181-1582 zf-CCHC PF00098.18 g86406.t1 - 0.00014 21.6 1 0.00022 20.9 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2859_contigs=1, transcript_loc=scaffold2859_contigs=1:9788-10507 Augustus predicted protein sequence Tomato scaffold2859_contigs=1~9788-10507 SPAM PF02090.10 g63848.t1 - 0.15 12 2.9 0.22 11.5 2 1.2 1 0 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:5891-6633 Augustus predicted protein sequence Tomato scaffold2045_contigs=9~5891-6633 Hrs_helical PF12210.3 g17074.t1 - 0.0011 19.1 1.4 0.0067 16.6 0.4 2.3 1 1 2 3 3 3 1 Hepatocyte growth factor-regulated tyrosine kinase substrate | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:104793-108176 Augustus predicted protein sequence Tomato scaffold694_contigs=2~104793-108176 Globin PF00042.17 g75265.t1 - 0.04 14.2 0.1 0.068 13.5 0.1 1.3 1 0 0 1 1 1 0 Globin | Ref_seq=scaffold2589_contigs=1, transcript_loc=scaffold2589_contigs=1:4153-5976 Augustus predicted protein sequence Tomato scaffold2589_contigs=1~4153-5976 GSK-3_bind PF05350.7 g57670.t1 - 0.029 13.8 1.2 0.033 13.6 0.8 1.2 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:207642-208590 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~207642-208590 ENOD40 PF08247.6 g13507.t1 - 0.093 12.5 0.1 0.28 11 0.1 1.8 1 0 0 1 1 1 0 ENOD40 protein | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:125911-126342 Augustus predicted protein sequence Tomato scaffold576_contigs=15~125911-126342 Transposase_28 PF04195.7 g11893.t1 - 0.00024 20.4 0 0.00047 19.4 0 1.4 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:195543-197739 Augustus predicted protein sequence Tomato scaffold530_contigs=12~195543-197739 NESP55 PF06390.7 g61744.t1 - 0.069 12.5 1.5 0.096 12 1.1 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1974_contigs=1, transcript_loc=scaffold1974_contigs=1:32842-38822 Augustus predicted protein sequence Tomato scaffold1974_contigs=1~32842-38822 DLD PF14878.1 g76706.t1 - 0.11 12.5 0.4 0.34 11 0.3 1.7 2 0 0 2 2 2 0 Death-like domain of SPT6 | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:400827-403186 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~400827-403186 TATR PF03430.8 g54454.t1 - 0.32 9.6 3.1 0.34 9.4 2.1 1 1 0 0 1 1 1 0 Trans-activating transcriptional regulator | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:163342-163602 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~163342-163602 ACT_6 PF13740.1 g82913.t1 - 0.064 12.9 0 0.15 11.8 0 1.6 2 0 0 2 2 2 0 ACT domain | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:281511-281958 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~281511-281958 KfrA_N PF11740.3 g10703.t1 - 0.11 12.9 0.5 0.47 10.9 0 2.1 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:301814-302146 Augustus predicted protein sequence Tomato scaffold503_contigs=7~301814-302146 DUF883 PF05957.8 g53028.t1 - 0.93 9.9 5.4 0.58 10.5 2 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:102203-104721 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~102203-104721 DUF605 PF04652.11 g62294.t1 - 0.072 12.4 10.4 0.09 12.1 7.2 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:442820-444763 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~442820-444763 Gyro_capsid PF04162.7 g37699.t1 - 0.077 11.2 0.1 0.087 11 0.1 1.1 1 0 0 1 1 1 0 Gyrovirus capsid protein (VP1) | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:109443-109769 Augustus predicted protein sequence Tomato scaffold1233_contigs=6~109443-109769 ALIX_LYPXL_bnd PF13949.1 g49795.t1 - 0.066 12.1 0 0.082 11.8 0 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:254915-257904 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~254915-257904 DUF3509 PF12021.3 g79451.t1 - 0.0034 17 0.8 0.0085 15.8 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3509) | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:115957-118149 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~115957-118149 Period_C PF12114.3 g84308.t1 - 1 8.9 5 1.4 8.4 3.5 1.3 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:25770-30541 Augustus predicted protein sequence Tomato scaffold2767_contigs=1~25770-30541 DUF1163 PF06651.6 g38713.t1 - 0.13 11.8 0.1 0.29 10.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1163) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:98772-99222 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~98772-99222 Phage_fiber PF03335.8 g8196.t1 - 8.1 6.5 9 3.3 7.7 0.3 3.5 3 0 0 3 3 3 0 Phage tail fibre repeat | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:335344-335730 Augustus predicted protein sequence Tomato scaffold421_contigs=12~335344-335730 Cytomega_gL PF01801.11 g55564.t1 - 0.054 12.9 0.1 0.057 12.9 0 1.1 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein L | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:137781-138100 Augustus predicted protein sequence Tomato scaffold1745_contigs=6~137781-138100 Shadoo PF14999.1 g60535.t1 - 1.3 8.9 3.5 3.2 7.6 0.1 2.7 3 0 0 3 3 3 0 Shadow of prion protein, neuroprotective | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:104305-106809 Augustus predicted protein sequence Tomato scaffold1954_contigs=4~104305-106809 UBN2 PF14223.1 g25866.t1 - 0.022 14.5 0 0.03 14 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:91744-92176 Augustus predicted protein sequence Tomato scaffold937_contigs=20~91744-92176 ATHILA PF03078.10 g36554.t1 - 0.0097 14.5 0 0.0097 14.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:44335-44643 Augustus predicted protein sequence Tomato scaffold1204_contigs=5~44335-44643 eIF_4EBP PF05456.6 g83489.t1 - 0.12 12 0 0.21 11.2 0 1.3 1 1 0 1 1 1 0 Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:687906-688196 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~687906-688196 ATHILA PF03078.10 g63779.t1 - 0.0000039 25.7 0 0.000006 25.1 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:171536-174789 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~171536-174789 TrbE PF11100.3 g28820.t1 - 1.6 8.6 4.9 0.61 9.9 0.7 2 2 0 0 2 2 2 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:425395-426641 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~425395-426641 IFT43 PF15305.1 g54159.t1 - 0.085 12.8 0.1 0.085 12.8 0.1 1.1 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:161045-161251 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~161045-161251 VGCC_beta4Aa_N PF12052.3 g66723.t1 - 0.0092 15.8 0.2 0.011 15.5 0.1 1.3 1 1 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:166028-166300 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~166028-166300 zf-CCHC PF00098.18 g34595.t1 - 0.0079 16 0.8 0.012 15.5 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:364054-364404 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~364054-364404 NICE-3 PF07406.6 g56704.t1 - 0.097 12.1 0 0.15 11.5 0 1.2 1 0 0 1 1 1 0 NICE-3 protein | Ref_seq=scaffold1814_contigs=1, transcript_loc=scaffold1814_contigs=1:20880-21134 Augustus predicted protein sequence Tomato scaffold1814_contigs=1~20880-21134 Resistin PF06954.6 g26030.t1 - 0.19 12 0.2 0.19 12 0.2 1.6 2 0 0 2 2 2 0 Resistin | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:203052-203393 Augustus predicted protein sequence Tomato scaffold942_contigs=10~203052-203393 ATHILA PF03078.10 g83373.t1 - 0.069 11.7 0 0.073 11.6 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:243305-243874 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~243305-243874 TPR_MLP1_2 PF07926.7 g947.t1 - 0.0083 15.8 4.6 0.013 15.2 3.2 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:82905-84664 Augustus predicted protein sequence Tomato scaffold182_contigs=2~82905-84664 zf-CCHC PF00098.18 g57685.t1 - 0.069 13.1 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:294526-295152 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~294526-295152 TFIIS_M PF07500.9 g2952.t1 - 0.052 13.6 0 0.075 13.1 0 1.1 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS), central domain | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:192422-193190 Augustus predicted protein sequence Tomato scaffold257_contigs=2~192422-193190 DUF2664 PF10867.3 g5615.t1 - 0.012 16.2 0.4 0.014 15.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2664) | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:154460-154714 Augustus predicted protein sequence Tomato scaffold334_contigs=13~154460-154714 CpcD PF01383.16 g79880.t1 - 0.51 10.5 2.6 5.6 7.2 0.3 2.6 2 0 0 2 2 2 0 CpcD/allophycocyanin linker domain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:125324-126945 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~125324-126945 DUF3778 PF12620.3 g32911.t1 - 0.097 12.2 0.2 0.13 11.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:371822-372477 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~371822-372477 ACTH_domain PF00976.13 g5928.t1 - 0.21 11.4 4.8 8.1 6.3 0.2 3.1 3 0 0 3 3 3 0 Corticotropin ACTH domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:147176-156431 Augustus predicted protein sequence Tomato scaffold344_contigs=14~147176-156431 zf-CCHC PF00098.18 g19564.t1 - 0.027 14.4 0.1 0.051 13.5 0.1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:46771-47742 Augustus predicted protein sequence Tomato scaffold756_contigs=8~46771-47742 Myc_N PF01056.13 g83427.t1 - 0.059 12.5 0.4 0.056 12.6 0.3 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:437480-437737 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~437480-437737 Trypan_PARP PF05887.6 g33794.t1 - 0.0014 18.4 7.9 0.0015 18.4 5.5 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:28667-29210 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~28667-29210 DUF330 PF03886.8 g53797.t1 - 0.06 12.7 0.1 0.12 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF330) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:59098-59955 Augustus predicted protein sequence Tomato scaffold1703_contigs=10~59098-59955 RVT_3 PF13456.1 g22959.t1 - 0.018 14.7 0 0.022 14.5 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:187734-188021 Augustus predicted protein sequence Tomato scaffold840_contigs=5~187734-188021 MCC-bdg_PDZ PF10506.4 g13867.t1 - 0.016 15 0.6 0.025 14.3 0.4 1.3 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:424031-424327 Augustus predicted protein sequence Tomato scaffold582_contigs=8~424031-424327 Peptidase_M28 PF04389.12 g47342.t1 - 0.078 12.7 0.1 0.091 12.4 0.1 1 1 0 0 1 1 1 0 Peptidase family M28 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:214060-214299 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~214060-214299 PH PF00169.24 g51585.t1 - 0.092 12.9 0.1 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 PH domain | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:30111-30422 Augustus predicted protein sequence Tomato scaffold1618_contigs=6~30111-30422 HpaP PF09483.5 g37386.t1 - 2.2 8.1 5.6 2.7 7.9 3.9 1.1 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:25507-25842 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~25507-25842 Herpes_UL3 PF03369.8 g75362.t1 - 0.014 15.3 0.4 14 5.6 0 3 3 0 0 3 3 3 0 Herpesvirus UL3 protein | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:130842-131908 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~130842-131908 Perilipin PF03036.11 g78385.t1 - 0.0094 14.8 0.2 0.011 14.6 0.1 1.1 1 0 0 1 1 1 1 Perilipin family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:65004-65545 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~65004-65545 Adeno_E1B_55K_N PF04623.7 g69705.t1 - 0.39 11.2 3.6 0.52 10.8 1.7 1.8 2 0 0 2 2 2 0 Adenovirus E1B protein N-terminus | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:448531-449443 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~448531-449443 ATHILA PF03078.10 g10503.t1 - 0.012 14.1 0 0.013 14.1 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:451633-451956 Augustus predicted protein sequence Tomato scaffold498_contigs=12~451633-451956 FlxA PF14282.1 g19734.t1 - 3.5 7.6 13.3 1.1 9.2 1.9 2.4 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:256677-260822 Augustus predicted protein sequence Tomato scaffold757_contigs=4~256677-260822 PIG-P PF08510.7 g47125.t1 - 0.21 11.1 1.5 0.28 10.7 1 1.1 1 0 0 1 1 1 0 PIG-P | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:622656-623241 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~622656-623241 Ndc1_Nup PF09531.5 g76909.t1 - 0.82 8 4.7 1.1 7.6 3.3 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:308621-309811 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~308621-309811 Pollen_Ole_e_I PF01190.12 g15057.t1 - 0.0018 18 0 0.0024 17.6 0 1.1 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:109003-109437 Augustus predicted protein sequence Tomato scaffold617_contigs=9~109003-109437 ATHILA PF03078.10 g86714.t1 - 0.015 13.8 0 1.7 7 0 2.1 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold2884_contigs=1, transcript_loc=scaffold2884_contigs=1:30566-31426 Augustus predicted protein sequence Tomato scaffold2884_contigs=1~30566-31426 Orn_Arg_deC_N PF02784.11 g75780.t1 - 0.1 11.7 0 0.12 11.5 0 1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:97091-98233 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~97091-98233 HgmA PF04209.8 g69919.t1 - 0.06 11.7 0 1.7 6.9 0 2 2 0 0 2 2 2 0 homogentisate 1,2-dioxygenase | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:5264-6770 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~5264-6770 DUF3006 PF11213.3 g63342.t1 - 0.081 12.6 0.5 0.12 12 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:340269-340517 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~340269-340517 DUF1725 PF08333.6 g41334.t1 - 0.32 10.3 1 26 4.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:4536-5943 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~4536-5943 Synaptobrevin PF00957.16 g433.t1 - 0.056 13 1.2 0.075 12.6 0.8 1.2 1 0 0 1 1 1 0 Synaptobrevin | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:45130-45387 Augustus predicted protein sequence Tomato scaffold36_contigs=4~45130-45387 CAF-1_p150 PF11600.3 g19072.t1 - 0.0055 16.1 33.1 0.0065 15.8 22.9 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:20125-20562 Augustus predicted protein sequence Tomato scaffold744_contigs=4~20125-20562 IPPT PF01715.12 g9152.t1 - 0.089 11.7 0 0.11 11.4 0 1.2 1 0 0 1 1 1 0 IPP transferase | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:105390-105708 Augustus predicted protein sequence Tomato scaffold448_contigs=2~105390-105708 DUF3945 PF13101.1 g58284.t1 - 0.0085 15.3 0.7 3.2 7 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3945) | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:102568-103366 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~102568-103366 DUF4455 PF14643.1 g32144.t1 - 0.0041 15.8 4.4 0.005 15.5 3.1 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:557076-557660 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~557076-557660 DBD_Tnp_Mut PF03108.10 g77955.t1 - 0.000013 24.6 0.1 0.000026 23.7 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:56292-56645 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~56292-56645 Tautomerase PF01361.16 g8829.t1 - 0.12 11.9 0 0.23 11.1 0 1.4 1 0 0 1 1 1 0 Tautomerase enzyme | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:152830-154888 Augustus predicted protein sequence Tomato scaffold441_contigs=5~152830-154888 OSR1_C PF12202.3 g50967.t1 - 1.3 8.7 3.4 47 3.7 0.1 3.2 3 0 0 3 3 3 0 Oxidative-stress-responsive kinase 1 C terminal | Ref_seq=scaffold1592_contigs=13, transcript_loc=scaffold1592_contigs=13:31995-32606 Augustus predicted protein sequence Tomato scaffold1592_contigs=13~31995-32606 RNR_inhib PF08591.5 g71763.t1 - 0.18 12.7 2.3 0.2 12.6 0.5 1.8 1 1 1 2 2 2 0 Ribonucleotide reductase inhibitor | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:170835-171434 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~170835-171434 SUZ PF12752.2 g30745.t1 - 0.49 10.9 4.8 6.8 7.2 0.1 2.4 1 1 1 2 2 2 0 SUZ domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:204773-205108 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~204773-205108 zf-BED PF02892.10 g32512.t1 - 0.0071 16 2.2 0.017 14.8 1.5 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1105_contigs=3, transcript_loc=scaffold1105_contigs=3:94-4578 Augustus predicted protein sequence Tomato scaffold1105_contigs=3~94-4578 BUD22 PF09073.5 g29269.t1 - 0.046 12.7 6.4 0.061 12.3 4.5 1.3 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:141816-143962 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~141816-143962 MoeZ_MoeB PF05237.8 g46150.t1 - 0.028 13.9 0 8 6.1 0 2.3 2 0 0 2 2 2 0 MoeZ/MoeB domain | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:236801-237746 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~236801-237746 DegS PF05384.6 g79140.t1 - 0.005 16 3 0.0054 15.9 2.1 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:28281-28583 Augustus predicted protein sequence Tomato scaffold2685_contigs=11~28281-28583 MCRS_N PF13325.1 g17457.t1 - 0.017 14.6 0 0.023 14.2 0 1.2 1 0 0 1 1 1 0 N-terminal region of micro-spherule protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:79684-80504 Augustus predicted protein sequence Tomato scaffold707_contigs=5~79684-80504 TPR_MLP1_2 PF07926.7 g80328.t1 - 1.5 8.5 10.9 1.7 8.3 6.9 1.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:79053-84385 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~79053-84385 DUF1395 PF07160.7 g40225.t1 - 0.012 15.1 2.4 0.02 14.4 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:157301-159833 Augustus predicted protein sequence Tomato scaffold1294_contigs=7~157301-159833 ATHILA PF03078.10 g42021.t1 - 0.034 12.7 0 0.04 12.5 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:231258-231587 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~231258-231587 Bet_v_1 PF00407.14 g52480.t1 - 0.13 11.8 0.2 0.19 11.3 0.1 1.4 1 1 0 1 1 1 0 Pathogenesis-related protein Bet v I family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:167020-167352 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~167020-167352 DUF2890 PF11081.3 g75759.t1 - 0.00089 19.3 1 0.0066 16.5 0.2 2 2 0 0 2 2 2 1 Protein of unknown function (DUF2890) | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:28453-32002 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~28453-32002 PsbP PF01789.11 g10424.t1 - 0.091 12.2 0 0.11 11.9 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:142959-143715 Augustus predicted protein sequence Tomato scaffold498_contigs=12~142959-143715 cwf18 PF08315.7 g15425.t1 - 0.015 15.7 0.9 0.018 15.5 0.6 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor | Ref_seq=scaffold625_contigs=3, transcript_loc=scaffold625_contigs=3:3636-3965 Augustus predicted protein sequence Tomato scaffold625_contigs=3~3636-3965 DUF1495 PF07381.6 g63016.t1 - 0.069 12.8 0 12 5.6 0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold2019_contigs=3, transcript_loc=scaffold2019_contigs=3:2475-3077 Augustus predicted protein sequence Tomato scaffold2019_contigs=3~2475-3077 Pol_alpha_B_N PF08418.5 g10494.t1 - 0.13 11.8 1.2 0.12 11.9 0.8 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:431348-432048 Augustus predicted protein sequence Tomato scaffold498_contigs=12~431348-432048 NESP55 PF06390.7 g39444.t1 - 0.000067 22.4 23.1 0.055 12.8 0.9 3.7 3 1 0 3 3 3 3 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1270_contigs=4, transcript_loc=scaffold1270_contigs=4:5768-6980 Augustus predicted protein sequence Tomato scaffold1270_contigs=4~5768-6980 TMF_DNA_bd PF12329.3 g74433.t1 - 0.0001 22 1 0.00023 20.9 0.7 1.6 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:39359-40140 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~39359-40140 DUF2626 PF11117.3 g74197.t1 - 0.017 15.5 0.1 0.16 12.4 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2626) | Ref_seq=scaffold2523_contigs=5, transcript_loc=scaffold2523_contigs=5:6289-6726 Augustus predicted protein sequence Tomato scaffold2523_contigs=5~6289-6726 DUF4568 PF15132.1 g56108.t1 - 0.089 11.9 0 0.12 11.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4568) | Ref_seq=scaffold1785_contigs=3, transcript_loc=scaffold1785_contigs=3:1792-2938 Augustus predicted protein sequence Tomato scaffold1785_contigs=3~1792-2938 DUF1347 PF07079.6 g15590.t1 - 0.026 12.7 0.1 0.031 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:35523-35909 Augustus predicted protein sequence Tomato scaffold635_contigs=5~35523-35909 zf-CCHC PF00098.18 g30321.t1 - 0.000006 25.9 1.3 0.0000085 25.4 0.9 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:53921-54334 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~53921-54334 ATHILA PF03078.10 g42702.t1 - 0.0002 20 0 0.00042 19 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:113737-114096 Augustus predicted protein sequence Tomato scaffold1370_contigs=2~113737-114096 CENP-B_dimeris PF09026.5 g77988.t1 - 0.044 14 14.6 0.063 13.5 10.1 1.2 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:138634-141513 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~138634-141513 Adeno_E3_14_5 PF04834.7 g42916.t1 - 0.09 13.2 0.2 0.16 12.4 0.2 1.3 1 0 0 1 1 1 0 Early E3 14.5 kDa protein | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:180120-183602 Augustus predicted protein sequence Tomato scaffold1375_contigs=5~180120-183602 Kinesin-relat_1 PF12711.2 g13587.t1 - 0.056 13.8 0.3 0.13 12.6 0.2 1.7 1 0 0 1 1 1 0 Kinesin motor | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:54227-54984 Augustus predicted protein sequence Tomato scaffold578_contigs=5~54227-54984 TraV PF09676.5 g62429.t1 - 0.044 14.4 0.4 0.056 14.1 0.3 1.2 1 0 0 1 1 1 0 Type IV conjugative transfer system lipoprotein (TraV) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:86711-87136 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~86711-87136 FTA2 PF13095.1 g11550.t1 - 0.093 12.3 0.1 0.11 12 0.1 1.1 1 0 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:384827-385240 Augustus predicted protein sequence Tomato scaffold525_contigs=12~384827-385240 ATP-synt_D PF01813.12 g29768.t1 - 0.054 13 3.2 0.18 11.3 1.7 1.9 2 0 0 2 2 2 0 ATP synthase subunit D | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:37964-40260 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~37964-40260 DUF2694 PF10904.3 g28290.t1 - 0.079 12.9 0.7 0.14 12.2 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:176948-177421 Augustus predicted protein sequence Tomato scaffold994_contigs=5~176948-177421 DUF4488 PF14869.1 g86131.t1 - 0.066 12.7 0 0.11 12 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) | Ref_seq=scaffold2838_contigs=1, transcript_loc=scaffold2838_contigs=1:33896-35240 Augustus predicted protein sequence Tomato scaffold2838_contigs=1~33896-35240 PaREP1 PF05942.6 g41107.t1 - 0.092 12.6 0.4 0.12 12.2 0.3 1.1 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family | Ref_seq=scaffold1324_contigs=9, transcript_loc=scaffold1324_contigs=9:24176-25120 Augustus predicted protein sequence Tomato scaffold1324_contigs=9~24176-25120 DUF605 PF04652.11 g85111.t1 - 1 8.6 4.2 1 8.7 2.9 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:78062-79186 Augustus predicted protein sequence Tomato scaffold2790_contigs=1~78062-79186 DUF2993 PF11209.3 g60123.t1 - 0.035 14 0.5 0.049 13.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2993) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:104008-108420 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~104008-108420 FH2 PF02181.18 g30650.t1 - 0.0038 16.1 0.3 0.0045 15.9 0.2 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:452742-453146 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~452742-453146 CENP-Q PF13094.1 g46827.t1 - 0.011 15.8 2.3 0.011 15.7 1.6 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:220809-221204 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~220809-221204 Voldacs PF03517.8 g18902.t1 - 0.17 11.7 2 0.27 11 1.4 1.2 1 0 0 1 1 1 0 Regulator of volume decrease after cellular swelling | Ref_seq=scaffold734_contigs=2, transcript_loc=scaffold734_contigs=2:5493-5986 Augustus predicted protein sequence Tomato scaffold734_contigs=2~5493-5986 ALIX_LYPXL_bnd PF13949.1 g22068.t1 - 0.0072 15.3 0.5 0.011 14.6 0.2 1.6 2 0 0 2 2 2 1 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:830819-832641 Augustus predicted protein sequence Tomato scaffold817_contigs=11~830819-832641 Penaeidin PF05927.6 g29245.t1 - 0.17 12.4 0.4 0.17 12.4 0.3 1.7 2 0 0 2 2 2 0 Penaeidin | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:59788-60198 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~59788-60198 Rz1 PF06085.6 g71839.t1 - 0.077 12.4 0 0.16 11.3 0 1.6 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:17740-18566 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~17740-18566 Keratin_B2 PF01500.12 g25545.t1 - 0.076 12.7 7.4 0.11 12.3 5.1 1.4 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:188416-188802 Augustus predicted protein sequence Tomato scaffold929_contigs=9~188416-188802 Reprolysin_2 PF13574.1 g4828.t1 - 0.043 13.8 0 0.058 13.4 0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:177509-181915 Augustus predicted protein sequence Tomato scaffold308_contigs=4~177509-181915 HR1 PF02185.11 g2880.t1 - 0.093 12.4 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:84734-85003 Augustus predicted protein sequence Tomato scaffold256_contigs=5~84734-85003 Fmp27 PF10344.4 g29930.t1 - 0.087 10.4 0 0.099 10.3 0 1 1 0 0 1 1 1 0 Mitochondrial protein from FMP27 | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:308844-309528 Augustus predicted protein sequence Tomato scaffold1035_contigs=10~308844-309528 UBN2 PF14223.1 g1255.t1 - 0.01 15.6 0.7 0.041 13.6 0 1.9 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:54810-55294 Augustus predicted protein sequence Tomato scaffold195_contigs=3~54810-55294 DUF959 PF06121.9 g36937.t1 - 0.039 13.5 0 0.052 13.1 0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF959) | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:178888-179367 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~178888-179367 DUF632 PF04782.7 g24326.t1 - 0.0034 16.5 0.3 0.0044 16.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF632) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:165990-167604 Augustus predicted protein sequence Tomato scaffold880_contigs=9~165990-167604 ATP-synt_D PF01813.12 g30258.t1 - 0.034 13.6 0 0.063 12.8 0 1.4 1 0 0 1 1 1 0 ATP synthase subunit D | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:295409-297292 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~295409-297292 Na_H_antiporter PF03553.9 g76859.t1 - 0.052 12.5 0.1 0.054 12.5 0 1 1 0 0 1 1 1 0 Na+/H+ antiporter family | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:121082-122416 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~121082-122416 CDC45 PF02724.9 g74078.t1 - 0.021 12.9 13.4 0.027 12.5 9.3 1.2 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:413336-414457 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~413336-414457 APG6 PF04111.7 g4815.t1 - 0.035 13.1 1.6 0.056 12.4 1.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:118026-119756 Augustus predicted protein sequence Tomato scaffold308_contigs=4~118026-119756 CCDC144C PF14915.1 g33703.t1 - 0.025 13.4 3.1 0.036 13 2.2 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:53757-54287 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~53757-54287 Ndc1_Nup PF09531.5 g10761.t1 - 0.082 11.3 1.1 0.098 11 0.7 1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup | Ref_seq=scaffold505_contigs=11, transcript_loc=scaffold505_contigs=11:253382-253861 Augustus predicted protein sequence Tomato scaffold505_contigs=11~253382-253861 Spectrin PF00435.16 g82397.t1 - 0.021 15 1.4 0.2 11.9 0.1 2.3 2 0 0 2 2 2 0 Spectrin repeat | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:56044-59092 Augustus predicted protein sequence Tomato scaffold2742_contigs=4~56044-59092 UBN2_3 PF14244.1 g24374.t1 - 0.016 14.7 0 1.4 8.4 0 2.9 1 1 1 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:368149-369562 Augustus predicted protein sequence Tomato scaffold880_contigs=9~368149-369562 Git3_C PF11970.3 g46422.t1 - 0.029 14.1 0.9 0.14 11.9 0.4 2.1 1 1 1 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 C-term | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:73328-73681 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~73328-73681 SSV1_ORF_D-335 PF07935.6 g21437.t1 - 0.047 13.4 0 0.047 13.4 0 1.1 1 0 0 1 1 1 0 ORF D-335-like protein | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:227564-227821 Augustus predicted protein sequence Tomato scaffold798_contigs=6~227564-227821 DUF972 PF06156.8 g14182.t1 - 0.0023 18.2 2.5 0.19 12 0.1 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF972) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:270729-271711 Augustus predicted protein sequence Tomato scaffold586_contigs=6~270729-271711 CBM_5_12_2 PF14600.1 g5656.t1 - 0.14 11.7 0.8 0.24 11 0 1.7 2 0 0 2 2 2 0 Cellulose-binding domain | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:329890-330509 Augustus predicted protein sequence Tomato scaffold334_contigs=13~329890-330509 ATHILA PF03078.10 g13779.t1 - 0.00000024 29.7 1 0.00000027 29.5 0.7 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:173299-173778 Augustus predicted protein sequence Tomato scaffold582_contigs=8~173299-173778 RNase_H2-Ydr279 PF09468.5 g75141.t1 - 0.88 8.7 3.5 1.1 8.4 2.4 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:409148-410527 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~409148-410527 BH4 PF02180.12 g13240.t1 - 0.12 11.8 0 0.19 11.2 0 1.3 1 0 0 1 1 1 0 Bcl-2 homology region 4 | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:78193-78627 Augustus predicted protein sequence Tomato scaffold570_contigs=9~78193-78627 DUF2407 PF10302.4 g36602.t1 - 0.12 12.5 0.1 0.13 12.4 0.1 1.1 1 0 0 1 1 1 0 DUF2407 ubiquitin-like domain | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:71375-73655 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~71375-73655 Cbl_N PF02262.11 g23498.t1 - 0.065 12.9 0.1 0.096 12.3 0 1.3 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:24064-25301 Augustus predicted protein sequence Tomato scaffold862_contigs=2~24064-25301 DUF4407 PF14362.1 g68319.t1 - 0.055 12.4 0.5 0.056 12.3 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:39526-41176 Augustus predicted protein sequence Tomato scaffold2210_contigs=4~39526-41176 Ribosomal_60s PF00428.14 g73737.t1 - 0.38 11.1 6.9 0.61 10.5 4.6 1.5 1 1 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2501_contigs=8, transcript_loc=scaffold2501_contigs=8:189708-192523 Augustus predicted protein sequence Tomato scaffold2501_contigs=8~189708-192523 DUF4201 PF13870.1 g7501.t1 - 0.0039 16.6 8.6 0.0092 15.4 3.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:60199-60846 Augustus predicted protein sequence Tomato scaffold403_contigs=6~60199-60846 IpaD PF06511.6 g85334.t1 - 0.1 11.5 0 0.11 11.4 0 1 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD | Ref_seq=scaffold2800_contigs=1, transcript_loc=scaffold2800_contigs=1:32176-32424 Augustus predicted protein sequence Tomato scaffold2800_contigs=1~32176-32424 Toxin_55 PF15606.1 g51486.t1 - 0.11 12.5 0 0.18 11.8 0 1.3 1 0 0 1 1 1 0 Putative toxin 55 | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:9674-11137 Augustus predicted protein sequence Tomato scaffold1615_contigs=2~9674-11137 FAM176 PF14851.1 g84053.t1 - 0.18 11.4 1.1 0.2 11.3 0.2 1.5 2 0 0 2 2 2 0 FAM176 family | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:229437-229938 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~229437-229938 DBD_Tnp_Mut PF03108.10 g53066.t1 - 0.0000003 29.9 0 0.00000039 29.5 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:39179-40260 Augustus predicted protein sequence Tomato scaffold1674_contigs=9~39179-40260 DUF1614 PF07758.6 g33098.t1 - 1.2 8.8 4.9 3.7 7.2 3.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1614) | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:164371-164776 Augustus predicted protein sequence Tomato scaffold1112_contigs=5~164371-164776 DUF466 PF04328.8 g3090.t1 - 0.079 12.8 0.1 0.21 11.4 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF466) | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:50902-54751 Augustus predicted protein sequence Tomato scaffold259_contigs=7~50902-54751 RA PF00788.18 g36315.t1 - 0.097 13.1 0.3 4.9 7.7 0 2.2 2 0 0 2 2 2 0 Ras association (RalGDS/AF-6) domain | Ref_seq=scaffold1191_contigs=1, transcript_loc=scaffold1191_contigs=1:1-781 Augustus predicted protein sequence Tomato scaffold1191_contigs=1~1-781 zf-CCHC_5 PF14787.1 g73967.t1 - 0.003 16.9 4.8 0.0061 16 3.3 1.5 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:388764-390821 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~388764-390821 Toxin_39 PF15500.1 g57384.t1 - 0.1 12.7 0.2 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:390781-391209 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~390781-391209 DUF3407 PF11887.3 g74837.t1 - 0.1 11.8 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:40933-42238 Augustus predicted protein sequence Tomato scaffold2571_contigs=16~40933-42238 RR_TM4-6 PF06459.7 g81437.t1 - 0.096 12.5 4.2 0.12 12.2 2.9 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:143855-144334 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~143855-144334 NSs PF11073.3 g79760.t1 - 0.033 13.4 0 0.046 12.9 0 1.2 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:523996-525103 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~523996-525103 TetR PF13972.1 g45137.t1 - 0.084 12.3 0 0.19 11.1 0 1.6 2 0 0 2 2 2 0 Bacterial transcriptional repressor | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:114074-117239 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~114074-117239 DUF2288 PF10052.4 g2552.t1 - 0.13 12 0.8 0.26 11 0.1 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2288) | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:94040-94797 Augustus predicted protein sequence Tomato scaffold243_contigs=2~94040-94797 DUF972 PF06156.8 g34302.t1 - 0.051 13.9 2.3 6.9 7 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:28660-29564 Augustus predicted protein sequence Tomato scaffold1147_contigs=3~28660-29564 DUF2694 PF10904.3 g17876.t1 - 0.021 14.8 0.1 0.04 13.9 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:211568-211933 Augustus predicted protein sequence Tomato scaffold715_contigs=2~211568-211933 Retrotrans_gag PF03732.12 g11474.t1 - 0.00014 21.8 0.2 0.00017 21.5 0.1 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:70158-70954 Augustus predicted protein sequence Tomato scaffold525_contigs=12~70158-70954 NCD3G PF07562.9 g34668.t1 - 0.12 12 1 0.12 12 0.7 2.4 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:245145-245447 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~245145-245447 MoaC PF01967.16 g13712.t1 - 0.011 15.4 0.1 0.012 15.3 0 1 1 0 0 1 1 1 0 MoaC family | Ref_seq=scaffold581_contigs=9, transcript_loc=scaffold581_contigs=9:56741-59780 Augustus predicted protein sequence Tomato scaffold581_contigs=9~56741-59780 Tmemb_55A PF09788.4 g20580.t1 - 0.11 11.5 0.8 0.12 11.5 0.6 1 1 0 0 1 1 1 0 Transmembrane protein 55A | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1177173-1177433 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1177173-1177433 CENP-Q PF13094.1 g4350.t1 - 0.0048 16.9 2 0.0063 16.5 1.4 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold297_contigs=3, transcript_loc=scaffold297_contigs=3:110547-111026 Augustus predicted protein sequence Tomato scaffold297_contigs=3~110547-111026 PS_Dcarbxylase PF02666.10 g75936.t1 - 0.01 15.1 0 0.011 15 0 1 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase | Ref_seq=scaffold2614_contigs=14, transcript_loc=scaffold2614_contigs=14:8519-8737 Augustus predicted protein sequence Tomato scaffold2614_contigs=14~8519-8737 Syntaxin_2 PF14523.1 g56279.t1 - 0.13 12.3 0 0.15 12 0 1.1 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold1797_contigs=4, transcript_loc=scaffold1797_contigs=4:51868-52155 Augustus predicted protein sequence Tomato scaffold1797_contigs=4~51868-52155 Rib_5-P_isom_A PF06026.9 g76218.t1 - 0.015 14.5 0.1 4.2 6.6 0 2.2 2 0 0 2 2 2 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:221047-225784 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~221047-225784 Exonuc_VII_L PF02601.10 g33659.t1 - 0.036 13.2 2.3 0.045 12.9 1.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:395055-398066 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~395055-398066 UPF0254 PF06787.6 g9701.t1 - 0.0011 18.5 0 1.3 8.5 0 2.7 2 1 0 2 2 2 2 Uncharacterised protein family (UPF0254) | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:118959-122804 Augustus predicted protein sequence Tomato scaffold469_contigs=1~118959-122804 Sar8_2 PF03058.9 g17261.t1 - 0.0019 18.5 0 0.0024 18.1 0 1.1 1 0 0 1 1 1 1 Sar8.2 family | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:153552-154811 Augustus predicted protein sequence Tomato scaffold701_contigs=5~153552-154811 DUF4643 PF15485.1 g9773.t1 - 0.083 12.3 0.1 0.086 12.3 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4643) | Ref_seq=scaffold473_contigs=14, transcript_loc=scaffold473_contigs=14:399351-400349 Augustus predicted protein sequence Tomato scaffold473_contigs=14~399351-400349 SH3BGR PF04908.10 g63795.t1 - 0.51 10.3 2.8 2.2 8.2 0.4 2.1 1 1 1 2 2 2 0 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:214682-214987 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~214682-214987 AvrB_AvrC PF05394.6 g14671.t1 - 0.042 12.8 0 0.045 12.7 0 1 1 0 0 1 1 1 0 Avirulence protein | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:152733-153020 Augustus predicted protein sequence Tomato scaffold599_contigs=8~152733-153020 DUF2613 PF11021.3 g86986.t1 - 0.032 13.9 2.8 4 7.2 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) | Ref_seq=scaffold2918_contigs=1, transcript_loc=scaffold2918_contigs=1:14108-14686 Augustus predicted protein sequence Tomato scaffold2918_contigs=1~14108-14686 Sugarporin_N PF11471.3 g17032.t1 - 0.026 14.1 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold691_contigs=5, transcript_loc=scaffold691_contigs=5:31648-35770 Augustus predicted protein sequence Tomato scaffold691_contigs=5~31648-35770 ATPase_gene1 PF09527.5 g41797.t1 - 0.28 10.9 4.5 26 4.7 0 3.1 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) | Ref_seq=scaffold1343_contigs=14, transcript_loc=scaffold1343_contigs=14:539276-539551 Augustus predicted protein sequence Tomato scaffold1343_contigs=14~539276-539551 Vip3A_N PF12495.3 g75397.t1 - 0.13 11.9 1.2 0.19 11.4 0.8 1.5 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:239824-240516 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~239824-240516 SplA PF11132.3 g56542.t1 - 0.11 12.2 0 0.19 11.4 0 1.4 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:160003-160598 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~160003-160598 Angiomotin_C PF12240.3 g61542.t1 - 0.12 11.9 3.2 0.14 11.6 2.2 1.1 1 0 0 1 1 1 0 Angiomotin C terminal | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:133672-134296 Augustus predicted protein sequence Tomato scaffold1971_contigs=11~133672-134296 DUF2990 PF11693.3 g69365.t1 - 0.08 12.8 0.1 0.12 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:169681-170521 Augustus predicted protein sequence Tomato scaffold2271_contigs=9~169681-170521 Sar8_2 PF03058.9 g21037.t1 - 7.5 6.9 8.1 0.23 11.8 0.7 2 2 0 0 2 2 2 0 Sar8.2 family | Ref_seq=scaffold790_contigs=1, transcript_loc=scaffold790_contigs=1:1932-2381 Augustus predicted protein sequence Tomato scaffold790_contigs=1~1932-2381 UPF1_Zn_bind PF09416.5 g31294.t1 - 0.018 14.6 0 0.13 11.8 0 2 2 0 0 2 2 2 0 RNA helicase (UPF2 interacting domain) | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:410726-412972 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~410726-412972 Nuc-transf PF10127.4 g84189.t1 - 0.0011 18.3 0 0.0012 18.2 0 1.2 1 0 0 1 1 1 1 Predicted nucleotidyltransferase | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:111908-112290 Augustus predicted protein sequence Tomato scaffold2765_contigs=1~111908-112290 DM PF00751.13 g17806.t1 - 0.0053 16.2 0.1 0.013 15 0.1 1.7 1 0 0 1 1 1 1 DM DNA binding domain | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:9400-13123 Augustus predicted protein sequence Tomato scaffold715_contigs=2~9400-13123 DUF421 PF04239.7 g37044.t1 - 0.013 14.9 0 2.1 7.9 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF421) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:83874-87476 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~83874-87476 Vir_act_alpha_C PF10400.4 g31193.t1 - 0.039 14.3 0.2 0.043 14.1 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1068_contigs=2, transcript_loc=scaffold1068_contigs=2:43158-43451 Augustus predicted protein sequence Tomato scaffold1068_contigs=2~43158-43451 YjfB_motility PF14070.1 g55537.t1 - 0.3 10.9 3.1 2.4 7.9 2.2 2.1 1 1 0 1 1 1 0 Putative motility protein | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:11171-11455 Augustus predicted protein sequence Tomato scaffold1745_contigs=6~11171-11455 DUF3545 PF12065.3 g67222.t1 - 0.16 11.7 0.5 0.3 10.8 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3545) | Ref_seq=scaffold2176_contigs=19, transcript_loc=scaffold2176_contigs=19:302981-309365 Augustus predicted protein sequence Tomato scaffold2176_contigs=19~302981-309365 DUF1265 PF06887.9 g71688.t1 - 0.12 12 0 0.21 11.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1265) | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:134061-134372 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~134061-134372 DUF3291 PF11695.3 g34435.t1 - 0.063 12.6 0 0.069 12.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3291) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:90532-90843 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~90532-90843 PKI PF02827.11 g55792.t1 - 0.17 12 1.5 1 9.5 0.1 2.5 2 1 1 3 3 3 0 cAMP-dependent protein kinase inhibitor | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:98699-99432 Augustus predicted protein sequence Tomato scaffold1773_contigs=11~98699-99432 DUF1347 PF07079.6 g52978.t1 - 0.066 11.4 0.1 0.083 11 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:78936-79397 Augustus predicted protein sequence Tomato scaffold1667_contigs=5~78936-79397 DUF1725 PF08333.6 g50305.t1 - 0.012 14.9 0.4 0.11 11.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:26727-27092 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~26727-27092 DUF1702 PF08012.6 g22227.t1 - 0.12 10.9 0 0.16 10.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:91435-94668 Augustus predicted protein sequence Tomato scaffold825_contigs=10~91435-94668 BMC PF00936.14 g34236.t1 - 0.093 12.4 0.9 0.094 12.4 0 1.5 2 0 0 2 2 2 0 BMC domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:204019-204249 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~204019-204249 HpaP PF09483.5 g16827.t1 - 0.15 11.9 3.1 0.33 10.8 1 1.9 2 0 0 2 2 2 0 Type III secretion protein (HpaP) | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:156202-156910 Augustus predicted protein sequence Tomato scaffold682_contigs=5~156202-156910 ATHILA PF03078.10 g57452.t1 - 0.0032 16.1 0.1 0.0056 15.3 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:117220-118477 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~117220-118477 BRCT PF00533.21 g63471.t1 - 0.08 13 0.2 0.16 12.1 0.2 1.5 1 1 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:78038-78626 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~78038-78626 DUF3423 PF11903.3 g45305.t1 - 0.13 12 0 0.23 11.2 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3423) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:722396-722605 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~722396-722605 STAT_bind PF02864.10 g63854.t1 - 0.18 11.4 0.1 0.31 10.5 0.1 1.3 1 0 0 1 1 1 0 STAT protein, DNA binding domain | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:22486-25944 Augustus predicted protein sequence Tomato scaffold2045_contigs=9~22486-25944 Lipoprotein_20 PF13942.1 g40425.t1 - 0.1 12.1 0.1 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 YfhG lipoprotein | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:157494-160909 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~157494-160909 zf-CCHC_4 PF14392.1 g12590.t1 - 0.0001 21.8 0.2 0.00019 21 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:332517-337045 Augustus predicted protein sequence Tomato scaffold556_contigs=11~332517-337045 RVT_3 PF13456.1 g75144.t1 - 0.00014 21.5 0.1 0.00024 20.7 0.1 1.5 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:412575-412879 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~412575-412879 ATHILA PF03078.10 g63133.t1 - 6.7E-009 34.8 0.1 0.000033 22.6 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:281034-281612 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~281034-281612 Dehydrin PF00257.14 g33441.t1 - 0.000042 23.9 32.6 0.00071 19.9 2.3 2.2 1 1 1 2 2 2 2 Dehydrin | Ref_seq=scaffold1127_contigs=3, transcript_loc=scaffold1127_contigs=3:21811-23143 Augustus predicted protein sequence Tomato scaffold1127_contigs=3~21811-23143 DUF2451 PF10474.4 g46464.t1 - 0.11 12.2 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2451) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:204554-205045 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~204554-205045 zf-BED PF02892.10 g40212.t1 - 0.044 13.5 1.9 0.11 12.2 1.3 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:99564-103881 Augustus predicted protein sequence Tomato scaffold1294_contigs=7~99564-103881 DUF605 PF04652.11 g9676.t1 - 5.8 6.2 12.4 7 5.9 8.6 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:35001-36311 Augustus predicted protein sequence Tomato scaffold469_contigs=1~35001-36311 DUF605 PF04652.11 g56349.t1 - 0.72 9.1 15.4 1 8.7 10.7 1.3 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:30062-31119 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~30062-31119 DUF3565 PF12088.3 g52987.t1 - 0.0076 15.9 0.1 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3565) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:347-2253 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~347-2253 DUF4387 PF14330.1 g1048.t1 - 0.068 13.5 0 0.082 13.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold186_contigs=2, transcript_loc=scaffold186_contigs=2:18724-19029 Augustus predicted protein sequence Tomato scaffold186_contigs=2~18724-19029 HSCB_C PF07743.8 g49341.t1 - 6.2 7.3 8.3 7.2 7.1 0.9 2.4 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:98326-98949 Augustus predicted protein sequence Tomato scaffold1535_contigs=9~98326-98949 DivIC PF04977.10 g29276.t1 - 0.00098 18.5 2.9 0.0021 17.4 2 1.6 1 0 0 1 1 1 1 Septum formation initiator | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:154965-155840 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~154965-155840 U6-snRNA_bdg PF10596.4 g43172.t1 - 0.088 12.1 0 0.11 11.9 0 1.1 1 0 0 1 1 1 0 U6-snRNA interacting domain of PrP8 | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:349687-349965 Augustus predicted protein sequence Tomato scaffold1383_contigs=8~349687-349965 zf-CCHC PF00098.18 g4167.t1 - 0.024 14.5 2.6 0.024 14.5 1.8 1.7 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:189960-190837 Augustus predicted protein sequence Tomato scaffold293_contigs=5~189960-190837 Spc7_C2 PF15577.1 g15821.t1 - 0.024 14.2 1.3 0.039 13.6 0.6 1.6 1 1 0 1 1 1 0 Spc7_C2 | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:81038-81499 Augustus predicted protein sequence Tomato scaffold645_contigs=7~81038-81499 RVT_3 PF13456.1 g25819.t1 - 0.00082 19.1 0.1 0.0011 18.7 0.1 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:282769-283433 Augustus predicted protein sequence Tomato scaffold933_contigs=12~282769-283433 IncA PF04156.9 g2973.t1 - 0.000096 22 4 0.00014 21.5 2.8 1.3 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:246010-246888 Augustus predicted protein sequence Tomato scaffold257_contigs=2~246010-246888 DRY_EERY PF09750.4 g59746.t1 - 0.031 14.3 5.6 0.035 14.2 3.9 1.1 1 0 0 1 1 1 0 Alternative splicing regulator | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:171211-171483 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~171211-171483 Pox_A_type_inc PF04508.7 g17185.t1 - 0.00002 23.9 6 0.034 13.9 0 3.6 3 0 0 3 3 3 2 Viral A-type inclusion protein repeat | Ref_seq=scaffold698_contigs=2, transcript_loc=scaffold698_contigs=2:54460-54885 Augustus predicted protein sequence Tomato scaffold698_contigs=2~54460-54885 Trypan_PARP PF05887.6 g11476.t1 - 0.18 11.6 4.5 0.21 11.3 3.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:71546-72085 Augustus predicted protein sequence Tomato scaffold525_contigs=12~71546-72085 DUF1201 PF06716.6 g87343.t1 - 0.62 9.9 3.7 14 5.5 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) | Ref_seq=scaffold3010_contigs=1, transcript_loc=scaffold3010_contigs=1:2914-3618 Augustus predicted protein sequence Tomato scaffold3010_contigs=1~2914-3618 DUF1959 PF09218.5 g23531.t1 - 0.0098 15.6 0 0.014 15.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:22527-22868 Augustus predicted protein sequence Tomato scaffold863_contigs=2~22527-22868 FlxA PF14282.1 g64700.t1 - 0.014 15.3 4.5 0.014 15.3 3.1 2.2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:101017-101702 Augustus predicted protein sequence Tomato scaffold2083_contigs=30~101017-101702 CDC37_C PF08564.5 g7932.t1 - 0.065 13 0.2 9.8 6 0 2.1 2 0 0 2 2 2 0 Cdc37 C terminal domain | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:50373-51567 Augustus predicted protein sequence Tomato scaffold411_contigs=3~50373-51567 TC1 PF15063.1 g54465.t1 - 0.061 12.8 0.1 0.15 11.6 0 1.6 1 1 0 1 1 1 0 Thyroid cancer protein 1 | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:176024-177481 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~176024-177481 Nucleoplasmin PF03066.10 g53903.t1 - 0.13 11.7 2.6 0.19 11.2 1.8 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1707_contigs=8, transcript_loc=scaffold1707_contigs=8:130651-131787 Augustus predicted protein sequence Tomato scaffold1707_contigs=8~130651-131787 Neisseria_TspB PF05616.8 g57428.t1 - 0.045 12.1 5.7 0.054 11.8 4 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:9471-10396 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~9471-10396 Nop14 PF04147.7 g84743.t1 - 3.1 5.6 20.7 3.7 5.3 14.3 1.2 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:103340-105104 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~103340-105104 SLT_beta PF02258.11 g20641.t1 - 0.14 12 0 18 5.2 0 2.1 2 0 0 2 2 2 0 Shiga-like toxin beta subunit | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:106998-107467 Augustus predicted protein sequence Tomato scaffold777_contigs=4~106998-107467 THOC7 PF05615.8 g17761.t1 - 0.039 14.2 1.1 0.064 13.5 0.2 1.8 1 1 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:154318-154650 Augustus predicted protein sequence Tomato scaffold714_contigs=9~154318-154650 DUF3581 PF12119.3 g22014.t1 - 0.067 12.4 0 0.077 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3581) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:593064-593384 Augustus predicted protein sequence Tomato scaffold817_contigs=11~593064-593384 Dimer_Tnp_hAT PF05699.9 g45692.t1 - 0.025 14.1 0.2 0.081 12.5 0.1 1.8 2 0 0 2 2 2 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:388787-389023 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~388787-389023 Asp_protease PF09668.5 g79508.t1 - 0.001 18.5 0.1 1.6 8.2 0 2.2 2 0 0 2 2 2 2 Aspartyl protease | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:73544-74161 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~73544-74161 CobT PF06213.7 g57173.t1 - 0.00053 19.2 4.7 0.001 18.2 3.3 1.4 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:64814-68122 Augustus predicted protein sequence Tomato scaffold1828_contigs=4~64814-68122 TgMIC1 PF11476.3 g87379.t1 - 0.0041 16.6 14.2 16 5 0 8.6 12 0 0 12 12 12 2 Toxoplasma gondii micronemal protein 1 TgMIC1 | Ref_seq=scaffold3032_contigs=1, transcript_loc=scaffold3032_contigs=1:793-6063 Augustus predicted protein sequence Tomato scaffold3032_contigs=1~793-6063 F-box-like_2 PF13013.1 g48956.t1 - 0.0041 16.8 0 1.9 8.2 0 2.2 2 0 0 2 2 2 2 F-box-like domain | Ref_seq=scaffold1518_contigs=7, transcript_loc=scaffold1518_contigs=7:7370-8826 Augustus predicted protein sequence Tomato scaffold1518_contigs=7~7370-8826 MDMPI_C PF07398.6 g53434.t1 - 0.093 13.3 0.5 0.33 11.5 0 1.9 1 1 1 2 2 2 0 MDMPI C-terminal domain | Ref_seq=scaffold1690_contigs=25, transcript_loc=scaffold1690_contigs=25:589883-590254 Augustus predicted protein sequence Tomato scaffold1690_contigs=25~589883-590254 DUF2235 PF09994.4 g3167.t1 - 0.018 14.4 0.2 3.4 6.9 0 2.3 1 1 1 2 2 2 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:28916-32283 Augustus predicted protein sequence Tomato scaffold261_contigs=2~28916-32283 Uds1 PF15456.1 g70256.t1 - 0.078 12.9 2.4 0.092 12.7 1.7 1.1 1 0 0 1 1 1 0 Up-regulated During Septation | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:181647-181940 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~181647-181940 DUF2360 PF10152.4 g34803.t1 - 0.0099 16.1 0.7 0.015 15.6 0.5 1.3 1 0 0 1 1 1 1 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:249889-250284 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~249889-250284 zf-FCS PF06467.9 g86543.t1 - 0.56 9.8 3.2 0.36 10.5 0.6 1.9 2 1 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif | Ref_seq=scaffold2871_contigs=1, transcript_loc=scaffold2871_contigs=1:17771-17986 Augustus predicted protein sequence Tomato scaffold2871_contigs=1~17771-17986 Bd3614_N PF14442.1 g13920.t1 - 0.35 10.8 1.8 0.46 10.4 1.3 1.2 1 0 0 1 1 1 0 Bd3614-like deaminase N-terminal | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:557255-557816 Augustus predicted protein sequence Tomato scaffold582_contigs=8~557255-557816 SBP_bac_7 PF03480.8 g86153.t1 - 0.017 14.2 0 0.019 14 0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:7449-9894 Augustus predicted protein sequence Tomato scaffold2840_contigs=1~7449-9894 CBFD_NFYB_HMF PF00808.18 g52680.t1 - 0.003 17.5 0.1 1.2 9.3 0 2.5 2 1 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:150719-151877 Augustus predicted protein sequence Tomato scaffold1647_contigs=32~150719-151877 DUF4512 PF14975.1 g59443.t1 - 0.12 13.2 0.2 0.22 12.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4512) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:30076-33296 Augustus predicted protein sequence Tomato scaffold1923_contigs=35~30076-33296 UBN2 PF14223.1 g71189.t1 - 0.04 13.7 0.7 0.04 13.7 0.5 1.7 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:29506-30144 Augustus predicted protein sequence Tomato scaffold2359_contigs=12~29506-30144 DUF2383 PF09537.5 g4733.t1 - 0.068 13.4 0.1 0.095 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:22589-22900 Augustus predicted protein sequence Tomato scaffold307_contigs=2~22589-22900 Herpes_UL25 PF01499.11 g62413.t1 - 3.2 5.9 7.3 3.5 5.8 5.1 1 1 0 0 1 1 1 0 Herpesvirus UL25 family | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:17218-17508 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~17218-17508 DUF4219 PF13961.1 g16881.t1 - 0.0013 18.1 0 0.0019 17.5 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:45129-46125 Augustus predicted protein sequence Tomato scaffold686_contigs=3~45129-46125 DBD_Tnp_Mut PF03108.10 g39207.t1 - 0.0000018 27.4 0.1 0.0000031 26.6 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:328718-329179 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~328718-329179 Ribosomal_60s PF00428.14 g63709.t1 - 0.092 13.1 4.4 0.13 12.7 3 1.3 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:17720-18115 Augustus predicted protein sequence Tomato scaffold2042_contigs=5~17720-18115 RNA_pol_Rpc4 PF05132.9 g10509.t1 - 4.1 7.3 6.6 6.7 6.7 4.4 1.5 1 1 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:460857-461213 Augustus predicted protein sequence Tomato scaffold498_contigs=12~460857-461213 CEP44 PF15007.1 g86560.t1 - 0.042 13.5 0.3 0.22 11.2 0 2.1 2 0 0 2 2 2 0 Centrosomal spindle body, CEP44 | Ref_seq=scaffold2872_contigs=1, transcript_loc=scaffold2872_contigs=1:39075-40164 Augustus predicted protein sequence Tomato scaffold2872_contigs=1~39075-40164 PEPcase PF00311.12 g23225.t1 - 0.053 11.3 2.5 0.062 11.1 1.8 1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:40598-41178 Augustus predicted protein sequence Tomato scaffold854_contigs=5~40598-41178 APT PF03440.9 g14162.t1 - 0.079 12.6 0 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Aerolysin/Pertussis toxin (APT) domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:187290-187733 Augustus predicted protein sequence Tomato scaffold586_contigs=6~187290-187733 Nucleoplasmin PF03066.10 g63370.t1 - 0.41 10.1 3.4 0.39 10.2 2.3 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:440037-440390 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~440037-440390 Nuc_recep-AF1 PF11825.3 g51258.t1 - 0.027 14.3 1.8 0.77 9.6 0.1 2.9 1 1 1 2 2 2 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:234606-235199 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~234606-235199 Muted PF14942.1 g47137.t1 - 0.084 12.7 2.8 0.098 12.5 1.9 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:661876-662271 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~661876-662271 Ecm29 PF13001.2 g54924.t1 - 0.013 13.9 0.2 0.016 13.7 0.1 1 1 0 0 1 1 1 0 Proteasome stabiliser | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:210691-211083 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~210691-211083 Spore_coat_CotO PF14153.1 g54894.t1 - 3.1 7.2 9.2 5.2 6.4 6.4 1.3 1 0 0 1 1 1 0 Spore coat protein CotO | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:99850-107589 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~99850-107589 Candida_ALS_N PF11766.3 g81637.t1 - 0.006 15.5 0 0.0084 15 0 1.2 1 0 0 1 1 1 1 Cell-wall agglutinin N-terminal ligand-sugar binding | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:331986-332552 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~331986-332552 FAR1 PF03101.10 g31135.t1 - 0.058 13.9 0 0.11 13 0 1.5 1 0 0 1 1 1 0 FAR1 DNA-binding domain | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:51066-52817 Augustus predicted protein sequence Tomato scaffold1061_contigs=9~51066-52817 Sdh5 PF03937.11 g58093.t1 - 0.098 12.3 0.3 4.7 6.9 0.1 2.1 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:61130-62821 Augustus predicted protein sequence Tomato scaffold1843_contigs=11~61130-62821 DUF4286 PF14114.1 g84919.t1 - 0.04 14.1 0.9 0.084 13.1 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:101918-102540 Augustus predicted protein sequence Tomato scaffold2784_contigs=1~101918-102540 RVT_3 PF13456.1 g71705.t1 - 0.00000022 30.5 0 0.00000035 29.8 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:183814-184872 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~183814-184872 KRTAP PF11759.3 g140.t1 - 4.1 7.7 10.2 7.9 6.8 7.1 1.6 1 1 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold7_contigs=9, transcript_loc=scaffold7_contigs=9:3573-3824 Augustus predicted protein sequence Tomato scaffold7_contigs=9~3573-3824 Transposase_28 PF04195.7 g3470.t1 - 0.12 11.6 0.1 0.26 10.5 0.1 1.5 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold273_contigs=2, transcript_loc=scaffold273_contigs=2:40337-42372 Augustus predicted protein sequence Tomato scaffold273_contigs=2~40337-42372 DUF3407 PF11887.3 g3229.t1 - 0.08 12.2 0 0.088 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:119296-119604 Augustus predicted protein sequence Tomato scaffold264_contigs=10~119296-119604 DUF3563 PF12086.3 g55026.t1 - 0.054 13.2 0.3 0.13 12 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3563) | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:8815-9800 Augustus predicted protein sequence Tomato scaffold1735_contigs=2~8815-9800 Plasmid_killer PF05015.8 g58303.t1 - 0.084 13 0.1 0.088 12.9 0 1.2 1 0 0 1 1 1 0 Plasmid maintenance system killer protein | Ref_seq=scaffold1852_contigs=2, transcript_loc=scaffold1852_contigs=2:49596-49802 Augustus predicted protein sequence Tomato scaffold1852_contigs=2~49596-49802 Ice_nucleation PF00818.12 g48776.t1 - 3.1 7.3 7.5 0.36 10.2 1.8 2.1 2 0 0 2 2 2 0 Ice nucleation protein repeat | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1124132-1128928 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~1124132-1128928 HAUS4 PF14735.1 g54460.t1 - 0.013 14.8 1.6 0.015 14.5 1.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:169983-170438 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~169983-170438 DUF2476 PF10630.4 g85472.t1 - 1.5 8.5 8.9 0.038 13.8 1.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2476) | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:32938-36126 Augustus predicted protein sequence Tomato scaffold2805_contigs=1~32938-36126 Med9 PF07544.8 g43008.t1 - 0.041 13.6 0 0.049 13.3 0 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:76640-76915 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~76640-76915 DUF760 PF05542.6 g49035.t1 - 0.049 13.8 0.1 0.059 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF760) | Ref_seq=scaffold1520_contigs=13, transcript_loc=scaffold1520_contigs=13:526868-527838 Augustus predicted protein sequence Tomato scaffold1520_contigs=13~526868-527838 CCDC71L PF15374.1 g75482.t1 - 0.0051 16.2 0.1 2.5 7.3 0 2.4 2 1 0 2 2 2 2 Coiled-coil domain-containing protein 71L | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:117993-118689 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~117993-118689 HALZ PF02183.13 g45693.t1 - 0.099 12.3 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:389817-390086 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~389817-390086 SSDP PF04503.8 g36490.t1 - 0.018 14.7 0.8 0.019 14.7 0.6 1.2 1 0 0 1 1 1 0 Single-stranded DNA binding protein, SSDP | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:188501-190603 Augustus predicted protein sequence Tomato scaffold1196_contigs=5~188501-190603 Sec3_C_2 PF15278.1 g87690.t1 - 0.073 13.2 0.6 12 6.1 0 2.2 1 1 1 2 2 2 0 Sec3 exocyst complex subunit | Ref_seq=scaffold3656_contigs=1, transcript_loc=scaffold3656_contigs=1:1021-1356 Augustus predicted protein sequence Tomato scaffold3656_contigs=1~1021-1356 EBV-NA3 PF05009.7 g31349.t1 - 0.0051 16 1.2 0.0051 16 0.8 1 1 0 0 1 1 1 1 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1070_contigs=2, transcript_loc=scaffold1070_contigs=2:100851-101054 Augustus predicted protein sequence Tomato scaffold1070_contigs=2~100851-101054 IncA PF04156.9 g1470.t1 - 0.00076 19.1 12.4 0.0012 18.4 8.6 1.3 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold203_contigs=2, transcript_loc=scaffold203_contigs=2:45642-46211 Augustus predicted protein sequence Tomato scaffold203_contigs=2~45642-46211 FBD PF08387.5 g79124.t1 - 0.011 15.1 0 0.018 14.4 0 1.3 1 0 0 1 1 1 0 FBD | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:301551-302829 Augustus predicted protein sequence Tomato scaffold2684_contigs=8~301551-302829 Troponin-I_N PF11636.3 g29234.t1 - 0.38 10.4 5.8 1.2 8.8 4 1.9 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold1014_contigs=6, transcript_loc=scaffold1014_contigs=6:23255-25053 Augustus predicted protein sequence Tomato scaffold1014_contigs=6~23255-25053 FH2 PF02181.18 g77691.t1 - 0.011 14.6 0.1 0.013 14.4 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:59027-59260 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~59027-59260 AF-4 PF05110.8 g44611.t1 - 0.35 8.6 7.9 0.37 8.5 5.5 1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein | Ref_seq=scaffold1434_contigs=2, transcript_loc=scaffold1434_contigs=2:22920-23899 Augustus predicted protein sequence Tomato scaffold1434_contigs=2~22920-23899 Peptidase_S46 PF10459.4 g10931.t1 - 1.2 7.4 9 1.5 7.1 6.2 1.2 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold509_contigs=2, transcript_loc=scaffold509_contigs=2:140698-141285 Augustus predicted protein sequence Tomato scaffold509_contigs=2~140698-141285 Nup153 PF08604.5 g28508.t1 - 0.029 13 2 0.031 12.9 1.4 1 1 0 0 1 1 1 0 Nucleoporin Nup153-like | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:195970-196245 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~195970-196245 EBV-NA3 PF05009.7 g16065.t1 - 0.14 11.4 1.3 0.14 11.3 0.9 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:191367-191594 Augustus predicted protein sequence Tomato scaffold654_contigs=10~191367-191594 DUF3970 PF13113.1 g35912.t1 - 0.14 11.8 0 0.28 10.8 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:82394-82927 Augustus predicted protein sequence Tomato scaffold1185_contigs=5~82394-82927 LPP PF04728.8 g55677.t1 - 0.026 14.3 0 8.7 6.2 0 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper | Ref_seq=scaffold1761_contigs=4, transcript_loc=scaffold1761_contigs=4:6234-6800 Augustus predicted protein sequence Tomato scaffold1761_contigs=4~6234-6800 bZIP_2 PF07716.10 g44988.t1 - 0.1 12.4 0.2 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:413378-414221 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~413378-414221 TENA_THI-4 PF03070.11 g28783.t1 - 0.12 12.1 0 0.16 11.7 0 1.1 1 0 0 1 1 1 0 TENA/THI-4/PQQC family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:314764-318192 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~314764-318192 DUF4510 PF14971.1 g54514.t1 - 0.019 15.1 1.5 0.042 14 1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4510) | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:96874-99166 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~96874-99166 DUF674 PF05056.7 g29532.t1 - 0.000059 21.8 0.1 0.0017 17 0.1 2 1 1 1 2 2 2 2 Protein of unknown function (DUF674) | Ref_seq=scaffold1027_contigs=5, transcript_loc=scaffold1027_contigs=5:155882-156269 Augustus predicted protein sequence Tomato scaffold1027_contigs=5~155882-156269 ATHILA PF03078.10 g46626.t1 - 0.0022 16.6 0 0.065 11.8 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:674660-675169 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~674660-675169 DUF2217 PF10265.4 g75176.t1 - 0.078 11.7 0.7 5.4 5.6 0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2217) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:600530-601783 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~600530-601783 DUF1989 PF09347.5 g37600.t1 - 0.11 11.9 0.1 0.16 11.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1989) | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:293805-294257 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~293805-294257 PDDEXK_1 PF12705.2 g74961.t1 - 0.013 14.9 1.4 0.015 14.6 0.9 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:143642-144105 Augustus predicted protein sequence Tomato scaffold2580_contigs=9~143642-144105 TFIIA PF03153.8 g82377.t1 - 0.019 14.9 3.3 0.019 14.8 2.3 1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:425512-426009 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~425512-426009 Sec8_exocyst PF04048.9 g58997.t1 - 0.0089 15.6 0.8 0.012 15.1 0.5 1.4 1 1 0 1 1 1 1 Sec8 exocyst complex component specific domain | Ref_seq=scaffold1889_contigs=7, transcript_loc=scaffold1889_contigs=7:18676-19137 Augustus predicted protein sequence Tomato scaffold1889_contigs=7~18676-19137 Phage_fiber_C PF06820.7 g29274.t1 - 0.14 12.2 0 0.23 11.5 0 1.3 1 0 0 1 1 1 0 Putative prophage tail fibre C-terminus | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:149023-149922 Augustus predicted protein sequence Tomato scaffold1015_contigs=8~149023-149922 DUF4656 PF15551.1 g46913.t1 - 0.11 11.6 0 0.11 11.6 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4656) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:665623-665856 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~665623-665856 Peptidase_S46 PF10459.4 g1194.t1 - 0.0043 15.5 6.1 0.0053 15.2 4.2 1.1 1 0 0 1 1 1 1 Peptidase S46 | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:127767-128982 Augustus predicted protein sequence Tomato scaffold193_contigs=2~127767-128982 SUZ PF12752.2 g32965.t1 - 0.49 10.9 7.1 0.17 12.4 0.8 2.7 1 1 1 2 2 2 0 SUZ domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:555499-556308 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~555499-556308 Reprolysin PF01421.14 g25747.t1 - 0.11 12 0.1 0.11 12 0.1 1 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:128532-128756 Augustus predicted protein sequence Tomato scaffold931_contigs=12~128532-128756 EF1G PF00647.14 g39863.t1 - 0.0065 16.1 0.1 0.021 14.5 0 1.8 2 0 0 2 2 2 1 Elongation factor 1 gamma, conserved domain | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:137744-138492 Augustus predicted protein sequence Tomato scaffold1277_contigs=20~137744-138492 Motilin_ghrelin PF04644.7 g57523.t1 - 0.039 13.7 0.7 2.9 7.7 0 2.4 2 0 0 2 2 2 0 Motilin/ghrelin | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:7328-7686 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~7328-7686 DUF4158 PF13700.1 g68854.t1 - 0.05 13 0 0.1 12 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:178953-181086 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~178953-181086 zf-C4_ClpX PF06689.8 g33547.t1 - 0.011 15.2 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 0 ClpX C4-type zinc finger | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:97276-97551 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~97276-97551 zf-RVT PF13966.1 g55911.t1 - 0.0000045 26.8 0.1 0.000011 25.6 0.1 1.7 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1777_contigs=8, transcript_loc=scaffold1777_contigs=8:96111-101173 Augustus predicted protein sequence Tomato scaffold1777_contigs=8~96111-101173 PAT1 PF09770.4 g14190.t1 - 3.8 5.6 14.2 4 5.5 9.9 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:282762-283160 Augustus predicted protein sequence Tomato scaffold586_contigs=6~282762-283160 Caldesmon PF02029.10 g1147.t1 - 0.11 10.8 1.1 0.13 10.6 0.7 1.1 1 0 0 1 1 1 0 Caldesmon | Ref_seq=scaffold192_contigs=3, transcript_loc=scaffold192_contigs=3:44833-45189 Augustus predicted protein sequence Tomato scaffold192_contigs=3~44833-45189 TOBE PF03459.12 g59048.t1 - 0.44 10.6 2.9 11 6.2 0.2 3 3 1 0 3 3 3 0 TOBE domain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:79988-80632 Augustus predicted protein sequence Tomato scaffold1892_contigs=29~79988-80632 YdjO PF14169.1 g11306.t1 - 0.087 12.2 0.1 0.18 11.2 0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:117870-121507 Augustus predicted protein sequence Tomato scaffold523_contigs=15~117870-121507 DUF329 PF03884.9 g6376.t1 - 0.12 11.9 0.4 0.22 11.1 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold365_contigs=1, transcript_loc=scaffold365_contigs=1:18036-18371 Augustus predicted protein sequence Tomato scaffold365_contigs=1~18036-18371 NADHdh_A3 PF14987.1 g71044.t1 - 1.1 9.2 3.9 14 5.6 3 2.2 1 1 1 2 2 2 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:588886-589284 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~588886-589284 RVT_3 PF13456.1 g30383.t1 - 0.00017 21.2 0.1 0.00031 20.4 0.1 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:274567-274875 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~274567-274875 CAP_N PF01213.14 g78443.t1 - 0.018 14.3 1.4 0.02 14.1 1 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:265271-265774 Augustus predicted protein sequence Tomato scaffold2669_contigs=10~265271-265774 Myosin_tail_1 PF01576.14 g20179.t1 - 0.0026 15.5 4.7 0.0043 14.8 3.3 1.2 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:167904-169714 Augustus predicted protein sequence Tomato scaffold768_contigs=4~167904-169714 EzrA PF06160.7 g70282.t1 - 0.016 13.4 2.7 0.018 13.2 1.9 1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:324891-325781 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~324891-325781 DUF755 PF05501.6 g46283.t1 - 0.096 12.7 5.6 0.12 12.3 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:887770-888075 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~887770-888075 Ilar_coat PF01787.11 g4783.t1 - 0.24 10.9 1.9 0.3 10.6 1.3 1.1 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:14298-15367 Augustus predicted protein sequence Tomato scaffold308_contigs=4~14298-15367 Peptidase_C48 PF02902.14 g52843.t1 - 0.0000041 26.5 0.4 0.033 13.8 0 2.3 1 1 0 2 2 2 2 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1650_contigs=8, transcript_loc=scaffold1650_contigs=8:23228-23823 Augustus predicted protein sequence Tomato scaffold1650_contigs=8~23228-23823 DUF3302 PF11742.3 g83503.t1 - 0.038 13.8 0.4 0.063 13.1 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3302) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:737372-737689 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~737372-737689 Hid1 PF12722.2 g48844.t1 - 8.2 3.9 7.2 9.1 3.8 5 1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:58691-59794 Augustus predicted protein sequence Tomato scaffold1509_contigs=13~58691-59794 BSMAP PF12280.3 g67119.t1 - 0.095 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Brain specific membrane anchored protein | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:27051-28860 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~27051-28860 PAT1 PF09770.4 g301.t1 - 0.12 10.6 18.7 0.14 10.4 13 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:132646-136228 Augustus predicted protein sequence Tomato scaffold17_contigs=4~132646-136228 PNPase_C PF12111.3 g72358.t1 - 6.3 6 8.3 0.33 10.1 0.3 2.6 2 1 0 2 2 2 0 Polyribonucleotide phosphorylase C terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1201928-1203670 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1201928-1203670 Prok-RING_4 PF14447.1 g48360.t1 - 0.0087 15.5 0 0.021 14.3 0 1.5 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:109444-113346 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~109444-113346 Arch_fla_DE PF04659.8 g58271.t1 - 0.067 13 0 0.093 12.5 0 1.2 1 0 0 1 1 1 0 Archaeal flagella protein | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:55141-55491 Augustus predicted protein sequence Tomato scaffold1851_contigs=29~55141-55491 zf-BED PF02892.10 g62313.t1 - 0.012 15.3 2.6 0.031 14 1.8 1.8 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:1-3737 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~1-3737 SpoIIIAH PF12685.2 g17300.t1 - 0.14 11.6 0.8 0.16 11.4 0.5 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:70475-70864 Augustus predicted protein sequence Tomato scaffold703_contigs=10~70475-70864 Apc9 PF12856.2 g65434.t1 - 0.056 13.5 0 8.4 6.5 0 2.2 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 9 | Ref_seq=scaffold2127_contigs=9, transcript_loc=scaffold2127_contigs=9:1544-6103 Augustus predicted protein sequence Tomato scaffold2127_contigs=9~1544-6103 SNF PF00209.13 g35086.t1 - 0.056 11.9 0.1 0.066 11.6 0.1 1.1 1 0 0 1 1 1 0 Sodium:neurotransmitter symporter family | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:204092-206472 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~204092-206472 DUF1985 PF09331.6 g76318.t1 - 0.000000017 34.3 0 0.000000024 33.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2623_contigs=9, transcript_loc=scaffold2623_contigs=9:70454-73256 Augustus predicted protein sequence Tomato scaffold2623_contigs=9~70454-73256 DBD_Tnp_Mut PF03108.10 g28367.t1 - 0.000023 23.8 0 0.000043 23 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:14550-17902 Augustus predicted protein sequence Tomato scaffold999_contigs=6~14550-17902 DUF3821 PF12863.2 g26897.t1 - 0.05 13.2 0 0.083 12.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:387205-387980 Augustus predicted protein sequence Tomato scaffold961_contigs=8~387205-387980 XLF PF09302.6 g65965.t1 - 0.081 12.6 0 0.1 12.3 0 1.1 1 0 0 1 1 1 0 XLF (XRCC4-like factor) | Ref_seq=scaffold2146_contigs=11, transcript_loc=scaffold2146_contigs=11:31187-32365 Augustus predicted protein sequence Tomato scaffold2146_contigs=11~31187-32365 CAF-1_p150 PF11600.3 g62068.t1 - 0.00057 19.3 31.2 0.00073 18.9 21.6 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:67404-68147 Augustus predicted protein sequence Tomato scaffold1982_contigs=6~67404-68147 GVQW PF13900.1 g59572.t1 - 0.083 12.8 0.2 0.48 10.4 0 2 2 0 0 2 2 2 0 Putative binding domain | Ref_seq=scaffold1927_contigs=30, transcript_loc=scaffold1927_contigs=30:116644-116958 Augustus predicted protein sequence Tomato scaffold1927_contigs=30~116644-116958 Linker_histone PF00538.14 g39135.t1 - 0.12 12.5 0.2 0.15 12.1 0.2 1.2 1 0 0 1 1 1 0 linker histone H1 and H5 family | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:52690-52986 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~52690-52986 zf-BED PF02892.10 g56824.t1 - 0.0027 17.4 2.6 0.0062 16.2 1.8 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1819_contigs=5, transcript_loc=scaffold1819_contigs=5:118852-119829 Augustus predicted protein sequence Tomato scaffold1819_contigs=5~118852-119829 SPT16 PF08644.6 g29826.t1 - 1.5 8.6 3.8 15 5.4 0 2.4 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:205130-207314 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~205130-207314 RNA_pol_Rpb1_R PF05001.8 g2269.t1 - 1.6 9 5.2 23 5.4 0.2 2.6 2 0 0 2 2 2 0 RNA polymerase Rpb1 C-terminal repeat | Ref_seq=scaffold233_contigs=2, transcript_loc=scaffold233_contigs=2:2069-2878 Augustus predicted protein sequence Tomato scaffold233_contigs=2~2069-2878 UBN2 PF14223.1 g22631.t1 - 0.00037 20.2 1.5 0.00057 19.6 0.1 1.9 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:187999-188580 Augustus predicted protein sequence Tomato scaffold832_contigs=9~187999-188580 Endotoxin_N PF03945.9 g48065.t1 - 0.083 12.2 0 0.092 12.1 0 1.1 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:542079-542465 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~542079-542465 ESPR PF13018.1 g87797.t1 - 0.97 9.1 5.6 34 4.1 0.6 3.4 3 1 0 3 3 3 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold4155_contigs=1, transcript_loc=scaffold4155_contigs=1:726-1082 Augustus predicted protein sequence Tomato scaffold4155_contigs=1~726-1082 DUF867 PF05908.6 g75717.t1 - 0.005 15.9 0 2.5 7.1 0 2.3 1 1 0 2 2 2 2 Protein of unknown function (DUF867) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:66219-67179 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~66219-67179 DUF2517 PF10725.4 g7357.t1 - 0.62 9.7 5.5 41 3.9 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2517) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:330-908 Augustus predicted protein sequence Tomato scaffold395_contigs=7~330-908 DUF35_N PF12172.3 g74429.t1 - 0.084 12.8 0.8 9.2 6.3 0.1 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:11901-14290 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~11901-14290 UPF0104 PF03706.8 g81249.t1 - 0.0018 17.5 3.1 0.0023 17.2 2.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:72836-73462 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~72836-73462 Flavi_propep PF01570.12 g83838.t1 - 0.34 10.6 2.1 0.76 9.5 0.5 1.9 1 1 1 2 2 2 0 Flavivirus polyprotein propeptide | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1999044-1999940 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1999044-1999940 EF-hand_like PF09279.6 g77202.t1 - 0.065 13.2 1.4 0.13 12.2 0.9 1.5 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:41119-42109 Augustus predicted protein sequence Tomato scaffold2651_contigs=23~41119-42109 ATHILA PF03078.10 g14646.t1 - 0.0000003 29.4 0.2 0.000023 23.1 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:6728-11340 Augustus predicted protein sequence Tomato scaffold599_contigs=8~6728-11340 QueC PF06508.8 g85750.t1 - 0.74 9 5.4 0.98 8.6 3.7 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:42140-43657 Augustus predicted protein sequence Tomato scaffold2817_contigs=1~42140-43657 ATHILA PF03078.10 g14118.t1 - 9.8E-013 47.4 0 0.0000013 27.2 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:55814-56999 Augustus predicted protein sequence Tomato scaffold586_contigs=6~55814-56999 Bim_N PF06773.6 g31944.t1 - 0.23 11.2 1.9 0.42 10.4 1.3 1.5 1 0 0 1 1 1 0 Bim protein N-terminus | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:39220-39456 Augustus predicted protein sequence Tomato scaffold1097_contigs=2~39220-39456 DUF4217 PF13959.1 g70029.t1 - 0.13 11.8 0 0.33 10.5 0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4217) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:280639-281924 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~280639-281924 Remorin_N PF03766.8 g46451.t1 - 0.13 12 4 0.17 11.6 2.8 1.2 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:176074-176745 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~176074-176745 DUF1880 PF08976.6 g68473.t1 - 0.12 12.4 0.1 0.16 12.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:335624-335899 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~335624-335899 NAM-associated PF14303.1 g70210.t1 - 0.17 12.1 7.2 0.23 11.7 5 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2334_contigs=7, transcript_loc=scaffold2334_contigs=7:17574-17879 Augustus predicted protein sequence Tomato scaffold2334_contigs=7~17574-17879 Gamma-thionin PF00304.15 g24981.t1 - 0.1 12.6 2.2 0.17 11.9 0.1 2 2 0 0 2 2 2 0 Gamma-thionin family | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:179270-183971 Augustus predicted protein sequence Tomato scaffold907_contigs=7~179270-183971 DUF1651 PF07864.6 g34662.t1 - 0.12 12.4 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1651) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:227518-227847 Augustus predicted protein sequence Tomato scaffold1153_contigs=2~227518-227847 Sec2p PF06428.6 g47569.t1 - 0.0051 16.6 0 0.0085 15.9 0 1.3 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:574758-575583 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~574758-575583 PBC PF03792.8 g8442.t1 - 0.039 13.6 0.8 0.042 13.5 0.5 1.1 1 0 0 1 1 1 0 PBC domain | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:11350-12050 Augustus predicted protein sequence Tomato scaffold427_contigs=11~11350-12050 MRG PF05712.8 g60874.t1 - 0.011 14.6 0 0.012 14.5 0 1.1 1 0 0 1 1 1 0 MRG | Ref_seq=scaffold1961_contigs=3, transcript_loc=scaffold1961_contigs=3:28788-30218 Augustus predicted protein sequence Tomato scaffold1961_contigs=3~28788-30218 DUF2514 PF10721.4 g75191.t1 - 0.91 9.2 3.4 1.1 8.9 1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2514) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:718722-719786 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~718722-719786 DUF2866 PF11065.3 g67884.t1 - 0.075 12.9 0 0.15 11.9 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2866) | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:126697-128618 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~126697-128618 Ribosomal_S2 PF00318.15 g1732.t1 - 0.46 9.6 2.9 0.63 9.2 2 1.1 1 0 0 1 1 1 0 Ribosomal protein S2 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:284502-285172 Augustus predicted protein sequence Tomato scaffold213_contigs=5~284502-285172 DUF4653 PF15546.1 g55396.t1 - 0.049 12.9 0 0.11 11.7 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4653) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:46417-47614 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~46417-47614 NST1 PF13945.1 g2230.t1 - 0.065 13.2 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:32187-33317 Augustus predicted protein sequence Tomato scaffold230_contigs=2~32187-33317 Glypican PF01153.14 g23492.t1 - 0.08 11.5 2.3 0.088 11.4 1.6 1.1 1 0 0 1 1 1 0 Glypican | Ref_seq=scaffold861_contigs=4, transcript_loc=scaffold861_contigs=4:41950-42787 Augustus predicted protein sequence Tomato scaffold861_contigs=4~41950-42787 PMT_C PF11647.3 g49227.t1 - 0.12 11.9 0 0.24 11 0 1.5 1 0 0 1 1 1 0 C-terminal region of Pasteurella multocida toxin residues 569-1285 | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:89324-89710 Augustus predicted protein sequence Tomato scaffold1529_contigs=6~89324-89710 DUF842 PF05811.8 g10372.t1 - 0.37 10.2 3.9 0.12 11.8 0.5 1.7 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:94621-95103 Augustus predicted protein sequence Tomato scaffold495_contigs=2~94621-95103 F_actin_bind PF08919.5 g29664.t1 - 0.13 11.9 0.4 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 F-actin binding | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:42021-42266 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~42021-42266 DUF3294 PF07957.6 g1351.t1 - 0.02 14.4 0.1 0.033 13.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3294) | Ref_seq=scaffold199_contigs=2, transcript_loc=scaffold199_contigs=2:40075-41961 Augustus predicted protein sequence Tomato scaffold199_contigs=2~40075-41961 SlyX PF04102.7 g38750.t1 - 0.0012 19.2 5.4 0.0024 18.2 3.7 1.4 1 0 0 1 1 1 1 SlyX | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:217357-217761 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~217357-217761 PAF-AH_p_II PF03403.8 g84432.t1 - 0.07 11.4 0 0.094 10.9 0 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:115114-115576 Augustus predicted protein sequence Tomato scaffold2769_contigs=1~115114-115576 AMP-binding_C PF13193.1 g24352.t1 - 0.0043 17.9 0.3 2.2 9.3 0 3.1 3 0 0 3 3 3 2 AMP-binding enzyme C-terminal domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:277912-278803 Augustus predicted protein sequence Tomato scaffold880_contigs=9~277912-278803 Acetyltransf_6 PF13480.1 g8640.t1 - 0.039 13.9 0.3 0.039 13.9 0.2 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:317006-317345 Augustus predicted protein sequence Tomato scaffold429_contigs=9~317006-317345 Crystallin PF00525.13 g19441.t1 - 0.16 12.2 0.3 0.39 10.9 0.2 1.6 1 0 0 1 1 1 0 Alpha crystallin A chain, N terminal | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:535235-536336 Augustus predicted protein sequence Tomato scaffold751_contigs=13~535235-536336 TraF_2 PF13729.1 g12472.t1 - 0.032 13 0.1 0.054 12.2 0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:68081-69370 Augustus predicted protein sequence Tomato scaffold555_contigs=3~68081-69370 DUF3839 PF12943.2 g25918.t1 - 0.0019 17.3 0.2 0.0021 17.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3839) | Ref_seq=scaffold940_contigs=2, transcript_loc=scaffold940_contigs=2:24864-25304 Augustus predicted protein sequence Tomato scaffold940_contigs=2~24864-25304 DUF4608 PF15381.1 g69491.t1 - 0.54 10.4 3.8 5.5 7.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2289_contigs=8, transcript_loc=scaffold2289_contigs=8:24-314 Augustus predicted protein sequence Tomato scaffold2289_contigs=8~24-314 ATHILA PF03078.10 g23726.t1 - 0.00000089 27.8 1 0.088 11.3 0 3.1 2 1 1 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:141806-142957 Augustus predicted protein sequence Tomato scaffold865_contigs=7~141806-142957 RVT_3 PF13456.1 g6690.t1 - 0.071 12.8 0 0.092 12.5 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:293086-293427 Augustus predicted protein sequence Tomato scaffold380_contigs=11~293086-293427 ThylakoidFormat PF11264.3 g16397.t1 - 0.15 11.6 0.1 0.19 11.2 0 1.1 1 0 0 1 1 1 0 Thylakoid formation protein | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:69988-70368 Augustus predicted protein sequence Tomato scaffold670_contigs=7~69988-70368 B5 PF03484.10 g50011.t1 - 0.04 13.7 0 0.086 12.6 0 1.5 1 0 0 1 1 1 0 tRNA synthetase B5 domain | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:84111-85785 Augustus predicted protein sequence Tomato scaffold1552_contigs=5~84111-85785 DUF2274 PF10038.4 g36221.t1 - 0.039 14 0.2 11 6.1 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:135-749 Augustus predicted protein sequence Tomato scaffold1189_contigs=6~135-749 HTH_29 PF13551.1 g77675.t1 - 0.065 13.3 0 13 5.9 0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:397839-398168 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~397839-398168 CASP_C PF08172.7 g87728.t1 - 0.062 12.3 0 2.3 7.1 0 2 1 1 1 2 2 2 0 CASP C terminal | Ref_seq=scaffold3805_contigs=1, transcript_loc=scaffold3805_contigs=1:892-1634 Augustus predicted protein sequence Tomato scaffold3805_contigs=1~892-1634 THAP PF05485.7 g63441.t1 - 0.0017 18.5 0.5 0.57 10.3 0 2.4 2 0 0 2 2 2 2 THAP domain | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:367356-368136 Augustus predicted protein sequence Tomato scaffold2035_contigs=8~367356-368136 DUF4051 PF13260.1 g34412.t1 - 0.11 11.8 0.3 0.22 10.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:3832-4671 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~3832-4671 DUF1979 PF09322.5 g4030.t1 - 0.059 13 0 0.12 12 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) | Ref_seq=scaffold286_contigs=6, transcript_loc=scaffold286_contigs=6:134360-134923 Augustus predicted protein sequence Tomato scaffold286_contigs=6~134360-134923 fn1 PF00039.13 g85437.t1 - 0.024 14.4 0.3 0.042 13.6 0.2 1.4 1 0 0 1 1 1 0 Fibronectin type I domain | Ref_seq=scaffold2804_contigs=1, transcript_loc=scaffold2804_contigs=1:1815-2549 Augustus predicted protein sequence Tomato scaffold2804_contigs=1~1815-2549 Period_C PF12114.3 g8816.t1 - 4.7 6.7 15.2 5.7 6.4 10.6 1.1 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:75528-77300 Augustus predicted protein sequence Tomato scaffold441_contigs=5~75528-77300 TCL1_MTCP1 PF01840.12 g57464.t1 - 0.082 12.4 0 0.1 12.1 0 1 1 0 0 1 1 1 0 TCL1/MTCP1 family | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:163947-164675 Augustus predicted protein sequence Tomato scaffold1832_contigs=5~163947-164675 MitMem_reg PF13012.1 g51019.t1 - 0.039 14 1.3 0.051 13.6 0.9 1.3 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function | Ref_seq=scaffold1604_contigs=5, transcript_loc=scaffold1604_contigs=5:79459-79767 Augustus predicted protein sequence Tomato scaffold1604_contigs=5~79459-79767 Herpes_LMP2 PF07415.6 g52001.t1 - 0.069 11.7 2.4 0.073 11.6 1.6 1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:229798-230124 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~229798-230124 DUF3313 PF11769.3 g4589.t1 - 0.052 12.9 0.1 0.066 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:30987-31563 Augustus predicted protein sequence Tomato scaffold304_contigs=1~30987-31563 Pox_int_trans PF05718.7 g33930.t1 - 0.12 10.8 0 0.13 10.7 0 1 1 0 0 1 1 1 0 Poxvirus intermediate transcription factor | Ref_seq=scaffold1138_contigs=6, transcript_loc=scaffold1138_contigs=6:83333-84263 Augustus predicted protein sequence Tomato scaffold1138_contigs=6~83333-84263 MHC2-interact PF09307.5 g82165.t1 - 0.41 10.4 2.4 0.59 9.9 1.1 1.6 1 1 1 2 2 2 0 CLIP, MHC2 interacting | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:569389-569742 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~569389-569742 CENP-F_leu_zip PF10473.4 g74486.t1 - 0.044 13.6 0.6 0.066 13 0.2 1.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:6701-7966 Augustus predicted protein sequence Tomato scaffold2555_contigs=31~6701-7966 DUF2457 PF10446.4 g40434.t1 - 0.36 9.4 1.2 0.39 9.3 0.8 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:195190-197363 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~195190-197363 DUF4165 PF13752.1 g61273.t1 - 0.042 13.6 0 0.045 13.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4165) | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:45918-46807 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~45918-46807 DUF3640 PF12342.3 g46039.t1 - 0.13 11.8 0.2 0.26 10.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3640) | Ref_seq=scaffold1473_contigs=6, transcript_loc=scaffold1473_contigs=6:11208-11564 Augustus predicted protein sequence Tomato scaffold1473_contigs=6~11208-11564 Zn_Tnp_IS1595 PF12760.2 g33578.t1 - 0.048 13.4 0.1 0.47 10.3 0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:173751-174266 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~173751-174266 Mpp10 PF04006.7 g8616.t1 - 0.12 10.6 13.9 0.12 10.6 9.6 1.1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:254907-255278 Augustus predicted protein sequence Tomato scaffold429_contigs=9~254907-255278 DUF2360 PF10152.4 g84895.t1 - 0.22 11.7 1.3 0.25 11.6 0.9 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:16750-19091 Augustus predicted protein sequence Tomato scaffold2784_contigs=1~16750-19091 TTSSLRR PF12468.3 g59675.t1 - 1.2 8.7 12.5 4 7 1.7 2.4 2 0 0 2 2 2 0 Type III secretion system leucine rich repeat protein | Ref_seq=scaffold1931_contigs=8, transcript_loc=scaffold1931_contigs=8:13057-13631 Augustus predicted protein sequence Tomato scaffold1931_contigs=8~13057-13631 Fer4_21 PF14697.1 g64631.t1 - 0.2 11.5 0.2 0.2 11.5 0.1 1.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:294006-294602 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~294006-294602 zf-CCHC_5 PF14787.1 g72208.t1 - 0.00015 21.1 1.7 0.00034 20 1.2 1.6 1 1 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:638301-639623 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~638301-639623 Ribonuc_2-5A PF06479.7 g79986.t1 - 0.057 13.2 1.3 0.056 13.2 0.9 1 1 0 0 1 1 1 0 Ribonuclease 2-5A | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:487700-488777 Augustus predicted protein sequence Tomato scaffold2704_contigs=20~487700-488777 ATHILA PF03078.10 g40367.t1 - 0.00000011 30.7 0.6 0.0013 17.3 0 3 3 0 0 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:267550-268443 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~267550-268443 Filament PF00038.16 g15329.t1 - 0.0014 18.1 2.3 0.0017 17.8 1.6 1 1 0 0 1 1 1 1 Intermediate filament protein | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:131971-132252 Augustus predicted protein sequence Tomato scaffold624_contigs=9~131971-132252 EutN_CcmL PF03319.8 g83917.t1 - 1.1 9.7 5 0.85 10 1.2 2.2 1 1 0 2 2 2 0 Ethanolamine utilisation protein EutN/carboxysome | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:132441-132932 Augustus predicted protein sequence Tomato scaffold2762_contigs=5~132441-132932 DUF1469 PF07332.6 g22045.t1 - 0.052 13.2 0.8 0.064 12.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:729268-729597 Augustus predicted protein sequence Tomato scaffold817_contigs=11~729268-729597 PurS PF02700.9 g23674.t1 - 0.11 12.4 0 0.18 11.7 0 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:14333-18036 Augustus predicted protein sequence Tomato scaffold865_contigs=7~14333-18036 zf-CCHC PF00098.18 g30119.t1 - 0.0094 15.8 0.2 0.013 15.3 0.1 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:46044-46304 Augustus predicted protein sequence Tomato scaffold1038_contigs=3~46044-46304 DUF1106 PF06523.6 g15437.t1 - 0.033 14 0 0.047 13.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1106) | Ref_seq=scaffold626_contigs=2, transcript_loc=scaffold626_contigs=2:31337-31657 Augustus predicted protein sequence Tomato scaffold626_contigs=2~31337-31657 RVT_3 PF13456.1 g48920.t1 - 0.029 14.1 0.2 0.54 10 0.1 2.1 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:299384-299722 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~299384-299722 Nop14 PF04147.7 g18103.t1 - 0.081 10.8 19.6 0.12 10.2 13.6 1.3 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:432135-433022 Augustus predicted protein sequence Tomato scaffold720_contigs=9~432135-433022 EF-hand_4 PF12763.2 g82648.t1 - 0.094 12.4 0.2 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 Cytoskeletal-regulatory complex EF hand | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:376860-377771 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~376860-377771 RVT_3 PF13456.1 g71376.t1 - 0.0082 15.8 0 0.02 14.6 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:742813-748510 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~742813-748510 Unstab_antitox PF09720.5 g10522.t1 - 0.12 12 0 0.24 11 0 1.5 1 0 0 1 1 1 0 Putative addiction module component | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:507355-508173 Augustus predicted protein sequence Tomato scaffold498_contigs=12~507355-508173 GAGE PF05831.6 g14113.t1 - 0.45 10.6 2.9 23 5.1 0.2 2.5 2 0 0 2 2 2 0 GAGE protein | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:14824-16131 Augustus predicted protein sequence Tomato scaffold586_contigs=6~14824-16131 Penaeidin PF05927.6 g74474.t1 - 0.33 11.5 2.6 0.48 10.9 1.6 1.5 1 1 0 1 1 1 0 Penaeidin | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:34865-35269 Augustus predicted protein sequence Tomato scaffold2547_contigs=8~34865-35269 RVT_3 PF13456.1 g10027.t1 - 0.045 13.5 0 0.053 13.3 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:227536-228460 Augustus predicted protein sequence Tomato scaffold481_contigs=9~227536-228460 DUF4248 PF14053.1 g7914.t1 - 0.11 12.1 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold410_contigs=1, transcript_loc=scaffold410_contigs=1:1598-1837 Augustus predicted protein sequence Tomato scaffold410_contigs=1~1598-1837 3HCDH_N PF02737.13 g10962.t1 - 0.001 18.7 2.1 0.24 11 0.2 2.1 1 1 1 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:66292-66774 Augustus predicted protein sequence Tomato scaffold510_contigs=5~66292-66774 DUF1502 PF07397.6 g63897.t1 - 1.9 8.1 4.9 3.3 7.4 0.3 2.8 2 2 0 2 2 2 0 Repeat of unknown function (DUF1502) | Ref_seq=scaffold2047_contigs=22, transcript_loc=scaffold2047_contigs=22:14054-14287 Augustus predicted protein sequence Tomato scaffold2047_contigs=22~14054-14287 DUF4219 PF13961.1 g56902.t1 - 0.00029 20.1 0.6 0.00047 19.4 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:30422-30739 Augustus predicted protein sequence Tomato scaffold1822_contigs=5~30422-30739 DivIVA PF05103.8 g72067.t1 - 0.0017 18.3 3 0.0026 17.8 2.1 1.3 1 0 0 1 1 1 1 DivIVA protein | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:143852-145219 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~143852-145219 Toxin_57 PF15535.1 g62592.t1 - 0.12 12.3 0 2.2 8.4 0 2.2 1 1 1 2 2 2 0 Putative toxin 57 | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:329019-329390 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~329019-329390 DUF4611 PF15387.1 g54899.t1 - 0.085 13 0.4 0.13 12.4 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:123816-126243 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~123816-126243 DUF755 PF05501.6 g24097.t1 - 1.3 9 9.9 9.7 6.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF755) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:125947-128985 Augustus predicted protein sequence Tomato scaffold876_contigs=13~125947-128985 DUF4290 PF14123.1 g22106.t1 - 0.043 13 0.4 0.061 12.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:49915-50409 Augustus predicted protein sequence Tomato scaffold819_contigs=1~49915-50409 ORF6C PF10552.4 g33869.t1 - 0.0059 16.3 0.4 0.01 15.5 0.3 1.3 1 0 0 1 1 1 1 ORF6C domain | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:250258-250677 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~250258-250677 PRCC PF10253.4 g41270.t1 - 0.14 12.8 0.2 0.14 12.8 0.2 2.3 2 1 0 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:238374-239760 Augustus predicted protein sequence Tomato scaffold1328_contigs=9~238374-239760 adh_short PF00106.20 g38329.t1 - 0.16 11.8 0 0.35 10.7 0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:1103593-1105318 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~1103593-1105318 DUF2360 PF10152.4 g19448.t1 - 2.1 8.5 5.9 2.6 8.3 4.1 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:564576-564914 Augustus predicted protein sequence Tomato scaffold751_contigs=13~564576-564914 Calpain_inhib PF00748.14 g28647.t1 - 5.5 7.3 8.1 0.49 10.7 2.1 1.7 2 0 0 2 2 2 0 Calpain inhibitor | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:45662-46132 Augustus predicted protein sequence Tomato scaffold1008_contigs=4~45662-46132 MEA1 PF06910.6 g55778.t1 - 0.11 12.1 0.1 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Male enhanced antigen 1 (MEA1) | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:54173-54571 Augustus predicted protein sequence Tomato scaffold1773_contigs=11~54173-54571 DUF2407 PF10302.4 g8656.t1 - 0.06 13.5 0.1 0.073 13.2 0.1 1.2 1 0 0 1 1 1 0 DUF2407 ubiquitin-like domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:372434-374132 Augustus predicted protein sequence Tomato scaffold429_contigs=9~372434-374132 PP2 PF14299.1 g26933.t1 - 0.000000073 31.9 0 0.0000001 31.4 0 1.3 1 0 0 1 1 1 1 Phloem protein 2 | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:106822-107247 Augustus predicted protein sequence Tomato scaffold962_contigs=5~106822-107247 NiFe_hyd_SSU_C PF14720.1 g78295.t1 - 0.09 12.8 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 NiFe/NiFeSe hydrogenase small subunit C-terminal | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:43542-43814 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~43542-43814 Tryp_FSAP PF08248.6 g50690.t1 - 0.17 12.2 4.1 0.17 12.2 2.9 2.6 2 0 0 2 2 2 0 Tryptophyllin-3 skin active peptide | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:191777-192040 Augustus predicted protein sequence Tomato scaffold1569_contigs=5~191777-192040 TPR_MLP1_2 PF07926.7 g47302.t1 - 0.034 13.8 0.1 0.041 13.6 0.1 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:103708-103962 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~103708-103962 DUF4254 PF14063.1 g86174.t1 - 0.011 15.2 0 0.016 14.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4254) | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:16915-19191 Augustus predicted protein sequence Tomato scaffold2841_contigs=1~16915-19191 RVT_3 PF13456.1 g56361.t1 - 0.0000015 27.8 0 0.0000023 27.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:78098-81996 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~78098-81996 BMFP PF04380.8 g71206.t1 - 0.15 12.2 0.9 0.2 11.8 0 1.6 2 0 0 2 2 2 0 Membrane fusogenic activity | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:111764-112099 Augustus predicted protein sequence Tomato scaffold2359_contigs=12~111764-112099 DUF2309 PF10070.4 g62515.t1 - 0.033 12.3 2.6 0.039 12 1.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:348574-348972 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~348574-348972 PTR2 PF00854.16 g77574.t1 - 0.000016 23.8 2.8 0.000024 23.3 2 1.3 1 1 0 1 1 1 1 POT family | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:58132-58410 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~58132-58410 Laminin_N PF00055.12 g25214.t1 - 0.082 11.8 0 0.098 11.6 0 1.1 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:130005-130268 Augustus predicted protein sequence Tomato scaffold924_contigs=4~130005-130268 Ubiquitin_2 PF14560.1 g87558.t1 - 0.005 17 0 4.9 7.4 0 2.3 2 0 0 2 2 2 2 Ubiquitin-like domain | Ref_seq=scaffold3305_contigs=1, transcript_loc=scaffold3305_contigs=1:1797-2367 Augustus predicted protein sequence Tomato scaffold3305_contigs=1~1797-2367 DUF1447 PF07288.6 g27422.t1 - 0.13 12.1 2 0.21 11.3 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1447) | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:41106-41830 Augustus predicted protein sequence Tomato scaffold979_contigs=3~41106-41830 DUF2526 PF10735.4 g65936.t1 - 0.0021 17.9 0.2 5.6 7 0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF2526) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:209275-212217 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~209275-212217 zf-CCHC PF00098.18 g85092.t1 - 0.00000013 31.2 5.5 0.00000025 30.2 3.8 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:8821-9108 Augustus predicted protein sequence Tomato scaffold2790_contigs=1~8821-9108 DUF2407_C PF13373.1 g51947.t1 - 0.14 12 0.3 0.17 11.7 0.2 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:65382-65873 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~65382-65873 Prp19_bind PF06991.6 g62922.t1 - 0.018 14.3 4.3 0.018 14.3 3 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:51643-51978 Augustus predicted protein sequence Tomato scaffold2015_contigs=7~51643-51978 DUF2894 PF11445.3 g42315.t1 - 1.2 9.3 10 0.2 11.8 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:160111-162368 Augustus predicted protein sequence Tomato scaffold1352_contigs=4~160111-162368 DUF4030 PF13222.1 g21382.t1 - 0.017 14.8 0 0.022 14.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4030) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:67904-69618 Augustus predicted protein sequence Tomato scaffold798_contigs=6~67904-69618 NESP55 PF06390.7 g36078.t1 - 7.2 5.8 7.5 12 5.1 5.2 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:273781-275273 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~273781-275273 CAF-1_p150 PF11600.3 g6814.t1 - 0.0039 16.5 27.7 0.0046 16.3 19.2 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:64384-64863 Augustus predicted protein sequence Tomato scaffold383_contigs=3~64384-64863 Lzipper-MIP1 PF14389.1 g48338.t1 - 0.076 13.1 0 0.11 12.6 0 1.1 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:43610-43864 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~43610-43864 Hepatitis_core PF00906.15 g44427.t1 - 0.046 13.3 1.7 0.053 13.1 1.2 1.1 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:172777-173067 Augustus predicted protein sequence Tomato scaffold1429_contigs=14~172777-173067 CPL PF08144.6 g58890.t1 - 0.055 13.3 0 0.079 12.7 0 1.3 1 0 0 1 1 1 0 CPL (NUC119) domain | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:130673-131235 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~130673-131235 ATHILA PF03078.10 g41827.t1 - 0.000028 22.9 0 0.000033 22.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:73318-73686 Augustus predicted protein sequence Tomato scaffold1344_contigs=2~73318-73686 CbtB PF09489.5 g9912.t1 - 0.064 13.1 0.6 0.19 11.6 0.4 1.8 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:134251-135263 Augustus predicted protein sequence Tomato scaffold478_contigs=9~134251-135263 zf-CCHC PF00098.18 g65584.t1 - 0.0002 21.1 0.7 0.0002 21.1 0.5 2.3 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:38088-39143 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~38088-39143 TBPIP PF07106.8 g77431.t1 - 0.0093 15.5 3.3 0.014 14.9 2.3 1.3 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:311233-312856 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~311233-312856 Transposase_28 PF04195.7 g55488.t1 - 0.00015 21 0.1 0.00029 20.1 0 1.4 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:388378-391138 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~388378-391138 Siva PF05458.7 g47314.t1 - 8.7 5.8 11.3 9.8 5.7 7.8 1.1 1 0 0 1 1 1 0 Cd27 binding protein (Siva) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:128197-128418 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~128197-128418 ATP-synt_8 PF00895.15 g1231.t1 - 7.6 6.8 6.2 1.4 9.2 0.8 2.3 3 0 0 3 3 3 0 ATP synthase protein 8 | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:78170-78463 Augustus predicted protein sequence Tomato scaffold194_contigs=2~78170-78463 Rabaptin PF03528.10 g68038.t1 - 0.61 10 4.8 0.22 11.4 1.3 1.7 1 1 1 2 2 2 0 Rabaptin | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:215766-216260 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~215766-216260 DUF3357 PF11837.3 g72081.t1 - 0.35 10.7 2.8 0.13 12.1 0.4 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:175926-176174 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~175926-176174 PCI PF01399.22 g83472.t1 - 0.021 15.1 0.1 0.039 14.2 0.1 1.5 1 1 0 1 1 1 0 PCI domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:628685-629140 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~628685-629140 VGCC_beta4Aa_N PF12052.3 g86995.t1 - 0.098 12.5 2.9 0.19 11.6 2 1.5 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2919_contigs=1, transcript_loc=scaffold2919_contigs=1:15488-18281 Augustus predicted protein sequence Tomato scaffold2919_contigs=1~15488-18281 PMG PF05287.7 g26965.t1 - 0.078 12.7 0.1 0.097 12.4 0 1.2 1 0 0 1 1 1 0 PMG protein | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:50624-50863 Augustus predicted protein sequence Tomato scaffold965_contigs=10~50624-50863 QLQ PF08880.6 g61021.t1 - 0.0000099 24.8 0 0.000014 24.4 0 1.2 1 0 0 1 1 1 1 QLQ | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:33767-34857 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~33767-34857 NAGLU_C PF12972.2 g78790.t1 - 0.022 14.1 0.8 0.025 13.9 0.5 1 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:65635-65895 Augustus predicted protein sequence Tomato scaffold2678_contigs=5~65635-65895 WH1 PF00568.18 g9029.t1 - 0.14 11.8 0 0.16 11.6 0 1.1 1 0 0 1 1 1 0 WH1 domain | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:471965-472204 Augustus predicted protein sequence Tomato scaffold443_contigs=11~471965-472204 KfrA_N PF11740.3 g4533.t1 - 0.013 15.9 0.7 0.015 15.7 0.5 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:35283-37022 Augustus predicted protein sequence Tomato scaffold303_contigs=3~35283-37022 Dispanin PF04505.7 g27290.t1 - 0.036 13.6 0 0.062 12.8 0 1.4 1 0 0 1 1 1 0 Interferon-induced transmembrane protein | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:266321-267642 Augustus predicted protein sequence Tomato scaffold974_contigs=15~266321-267642 DegS PF05384.6 g75004.t1 - 0.0026 17 0.3 0.0029 16.8 0.2 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:9204-9501 Augustus predicted protein sequence Tomato scaffold2582_contigs=20~9204-9501 FlaC_arch PF05377.6 g85084.t1 - 0.0035 17.1 0.1 0.011 15.6 0.1 1.8 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:84865-86149 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~84865-86149 UBN2 PF14223.1 g5470.t1 - 0.014 15.2 2.1 0.1 12.3 0 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:17909-18432 Augustus predicted protein sequence Tomato scaffold329_contigs=2~17909-18432 Tropomyosin PF00261.15 g7828.t1 - 0.016 14.2 10.1 0.02 13.9 7 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:286911-287363 Augustus predicted protein sequence Tomato scaffold408_contigs=6~286911-287363 Med5 PF08689.5 g12012.t1 - 0.0018 16.1 0.4 0.0022 15.8 0.3 1 1 0 0 1 1 1 1 Mediator complex subunit Med5 | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:92341-93331 Augustus predicted protein sequence Tomato scaffold535_contigs=8~92341-93331 ComA PF02679.10 g84587.t1 - 0.083 11.8 0 0.096 11.6 0 1.1 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) | Ref_seq=scaffold2774_contigs=1, transcript_loc=scaffold2774_contigs=1:34124-34444 Augustus predicted protein sequence Tomato scaffold2774_contigs=1~34124-34444 ATHILA PF03078.10 g2314.t1 - 3.1E-009 35.9 0.3 0.0000061 25 0 2.2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:100740-102081 Augustus predicted protein sequence Tomato scaffold234_contigs=2~100740-102081 Cortex-I_coil PF09304.5 g40050.t1 - 0.11 12.6 0.2 0.18 11.8 0.1 1.5 1 1 1 2 2 2 0 Cortexillin I, coiled coil | Ref_seq=scaffold1290_contigs=9, transcript_loc=scaffold1290_contigs=9:100165-100437 Augustus predicted protein sequence Tomato scaffold1290_contigs=9~100165-100437 Phage_GPO PF05929.6 g50069.t1 - 0.066 12.4 2 0.071 12.3 1.4 1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:116180-116557 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~116180-116557 Glyco_hydro_49 PF03718.8 g87047.t1 - 0.065 11.2 0 0.082 10.9 0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 49 | Ref_seq=scaffold2927_contigs=1, transcript_loc=scaffold2927_contigs=1:3119-4248 Augustus predicted protein sequence Tomato scaffold2927_contigs=1~3119-4248 Cwf_Cwc_15 PF04889.7 g47460.t1 - 0.031 13.9 0.5 0.039 13.6 0.4 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:7336-7647 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~7336-7647 UMPH-1 PF05822.7 g43728.t1 - 0.082 12.2 0 0.093 12 0 1 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:169548-172009 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~169548-172009 RR_TM4-6 PF06459.7 g7664.t1 - 1.7 8.4 14.5 2 8.2 10 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:105026-105535 Augustus predicted protein sequence Tomato scaffold405_contigs=10~105026-105535 Antigen_Bd37 PF11641.3 g74891.t1 - 0.095 11.9 0.1 0.16 11.2 0.1 1.3 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:122317-127227 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~122317-127227 DUF2360 PF10152.4 g38276.t1 - 1.2 9.3 3.3 5.9 7.1 0.1 2 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:802992-803327 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~802992-803327 SPW PF03779.9 g77445.t1 - 0.02 14.2 0.4 0.13 11.6 1 1.7 2 0 0 2 2 2 0 SPW repeat | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:361101-362213 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~361101-362213 DUF1075 PF06388.6 g76982.t1 - 0.013 15.1 2.6 0.015 14.9 1.6 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:348229-348486 Augustus predicted protein sequence Tomato scaffold2643_contigs=16~348229-348486 CaM-KIIN PF15170.1 g601.t1 - 0.0034 17.3 4.8 4.3 7.4 0.1 3.8 1 1 3 4 4 4 3 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:41997-42260 Augustus predicted protein sequence Tomato scaffold66_contigs=5~41997-42260 PIG-U PF06728.8 g72041.t1 - 0.036 12.9 1 0.046 12.5 0.7 1 1 0 0 1 1 1 0 GPI transamidase subunit PIG-U | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:2400-3161 Augustus predicted protein sequence Tomato scaffold2381_contigs=8~2400-3161 DUF4525 PF15027.1 g292.t1 - 0.039 13.4 1.4 0.071 12.6 0.1 2 2 1 0 2 2 2 0 Domain of unknown function (DUF4525) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:102434-104070 Augustus predicted protein sequence Tomato scaffold17_contigs=4~102434-104070 CCDC155 PF14662.1 g64029.t1 - 0.00000056 29.3 3.6 0.00000069 29 2.5 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:50621-51192 Augustus predicted protein sequence Tomato scaffold2050_contigs=3~50621-51192 DUF3716 PF12511.3 g54468.t1 - 0.25 10.9 4.1 0.45 10.1 2.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3716) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:181364-181705 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~181364-181705 FlxA PF14282.1 g20069.t1 - 0.13 12.2 1.4 0.19 11.6 1 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:188147-188557 Augustus predicted protein sequence Tomato scaffold767_contigs=5~188147-188557 DUF1900 PF08954.6 g48847.t1 - 0.0035 16.8 0 2.4 7.7 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1900) | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:67801-68346 Augustus predicted protein sequence Tomato scaffold1509_contigs=13~67801-68346 DEPP PF15343.1 g38202.t1 - 0.073 12.6 0.5 0.083 12.4 0.3 1.1 1 0 0 1 1 1 0 Decidual protein induced by progesterone family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:576504-577004 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~576504-577004 DDE_1 PF03184.14 g38438.t1 - 0.082 12 0 0.16 11 0 1.5 1 1 1 2 2 2 0 DDE superfamily endonuclease | Ref_seq=scaffold1244_contigs=5, transcript_loc=scaffold1244_contigs=5:51451-52116 Augustus predicted protein sequence Tomato scaffold1244_contigs=5~51451-52116 Leptin PF02024.10 g2346.t1 - 0.027 14.1 0.3 0.042 13.4 0.2 1.3 1 0 0 1 1 1 0 Leptin | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:11351-11923 Augustus predicted protein sequence Tomato scaffold235_contigs=2~11351-11923 DUF1049 PF06305.6 g60573.t1 - 0.017 14.6 1.3 0.019 14.3 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:80986-81276 Augustus predicted protein sequence Tomato scaffold1955_contigs=3~80986-81276 Prp19_bind PF06991.6 g30821.t1 - 6.9 5.8 7.6 7.9 5.6 5.2 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:478991-479368 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~478991-479368 DUF364 PF04016.7 g79625.t1 - 0.11 11.8 0.1 0.17 11.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF364) | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:320250-320821 Augustus predicted protein sequence Tomato scaffold2699_contigs=36~320250-320821 KAR9 PF08580.5 g8762.t1 - 0.0097 14.2 0.1 0.0098 14.2 0 1.1 1 0 0 1 1 1 1 Yeast cortical protein KAR9 | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:52146-52874 Augustus predicted protein sequence Tomato scaffold436_contigs=4~52146-52874 DUF4413 PF14372.1 g60863.t1 - 0.000049 23.2 0.7 0.00015 21.6 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold1960_contigs=6, transcript_loc=scaffold1960_contigs=6:64333-65147 Augustus predicted protein sequence Tomato scaffold1960_contigs=6~64333-65147 CM_2 PF01817.16 g70743.t1 - 0.086 12.9 0 0.11 12.5 0 1.2 1 0 0 1 1 1 0 Chorismate mutase type II | Ref_seq=scaffold2349_contigs=3, transcript_loc=scaffold2349_contigs=3:20660-21316 Augustus predicted protein sequence Tomato scaffold2349_contigs=3~20660-21316 DUF2935 PF11155.3 g18162.t1 - 0.02 14.9 0 0.038 14 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2935) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:588995-589528 Augustus predicted protein sequence Tomato scaffold720_contigs=9~588995-589528 CDC45 PF02724.9 g34355.t1 - 0.016 13.2 16.3 0.018 13.1 11.3 1.2 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:136774-137298 Augustus predicted protein sequence Tomato scaffold1148_contigs=4~136774-137298 DUF1347 PF07079.6 g27009.t1 - 0.074 11.2 0.1 0.088 10.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:180623-181180 Augustus predicted protein sequence Tomato scaffold965_contigs=10~180623-181180 Retrotrans_gag PF03732.12 g71795.t1 - 0.00052 20 0.2 0.00052 20 0.1 2 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:29443-30587 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~29443-30587 CAP_N PF01213.14 g10563.t1 - 0.34 10.1 5.7 0.55 9.4 4 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:607028-607884 Augustus predicted protein sequence Tomato scaffold498_contigs=12~607028-607884 DUF1510 PF07423.6 g85540.t1 - 0.022 14.1 3.3 0.027 13.8 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold2808_contigs=1, transcript_loc=scaffold2808_contigs=1:55352-56325 Augustus predicted protein sequence Tomato scaffold2808_contigs=1~55352-56325 FadA PF09403.5 g75039.t1 - 0.067 13.1 0 0.075 13 0 1.1 1 0 0 1 1 1 0 Adhesion protein FadA | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:1955-2454 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~1955-2454 PADR1 PF08063.7 g51631.t1 - 0.14 11.5 0.6 0.36 10.2 0.4 1.7 1 1 0 1 1 1 0 PADR1 (NUC008) domain | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:119068-119686 Augustus predicted protein sequence Tomato scaffold1619_contigs=7~119068-119686 Med2 PF11214.3 g70318.t1 - 0.4 10.7 4.1 0.31 11.1 1.9 1.5 2 0 0 2 2 2 0 Mediator complex subunit 2 | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:489331-492008 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~489331-492008 DUF2856 PF11043.3 g28511.t1 - 0.027 14.5 0.8 4.5 7.4 0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2856) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:201819-202785 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~201819-202785 BLVR PF06375.6 g71879.t1 - 0.049 13.4 6.3 0.051 13.4 4.3 1.1 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:154459-154764 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~154459-154764 DNA_pol_phi PF04931.8 g87778.t1 - 6.1 4.4 12.3 7.3 4.2 8.5 1 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold4058_contigs=1, transcript_loc=scaffold4058_contigs=1:1-1117 Augustus predicted protein sequence Tomato scaffold4058_contigs=1~1-1117 IBV_3A PF03617.8 g65194.t1 - 0.076 12.7 0.7 0.17 11.6 0.5 1.6 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:257318-257881 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~257318-257881 MCPVI PF02993.9 g2780.t1 - 0.53 10.3 0 0.53 10.3 0 2.6 2 1 1 3 3 3 0 Minor capsid protein VI | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:41284-49852 Augustus predicted protein sequence Tomato scaffold254_contigs=6~41284-49852 Laminin_II PF06009.7 g68412.t1 - 0.031 14 1.5 0.039 13.6 1.1 1.1 1 0 0 1 1 1 0 Laminin Domain II | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:118758-119167 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~118758-119167 CcmD PF04995.9 g51544.t1 - 0.12 12 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:265575-266469 Augustus predicted protein sequence Tomato scaffold1616_contigs=7~265575-266469 DUF1003 PF06210.6 g39533.t1 - 0.082 12.8 0.8 0.13 12.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:150275-150667 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~150275-150667 DUF3918 PF13056.1 g36217.t1 - 0.25 10.7 0.2 0.25 10.7 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3918) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:210940-211239 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~210940-211239 RraB PF06877.6 g74524.t1 - 0.087 13.4 1.2 0.11 13.1 0.6 1.3 1 1 0 1 1 1 0 Regulator of ribonuclease activity B | Ref_seq=scaffold2559_contigs=11, transcript_loc=scaffold2559_contigs=11:68637-68951 Augustus predicted protein sequence Tomato scaffold2559_contigs=11~68637-68951 PE_PPE_C PF12484.3 g8750.t1 - 0.029 15.2 0.2 0.047 14.6 0.1 1.3 1 0 0 1 1 1 0 Polymorphic PE/PPE proteins C terminal | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:98931-99344 Augustus predicted protein sequence Tomato scaffold434_contigs=1~98931-99344 Peptidase_C8 PF03569.8 g79615.t1 - 0.012 14.9 0.6 4.6 6.4 0 2.3 2 0 0 2 2 2 0 Peptidase family C8 | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:270569-274407 Augustus predicted protein sequence Tomato scaffold2699_contigs=36~270569-274407 DUF2215 PF10225.4 g58879.t1 - 0.037 13.4 0.3 0.045 13.2 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:60806-61225 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~60806-61225 K1377 PF15352.1 g12380.t1 - 0.019 12.9 0.6 0.02 12.8 0.4 1 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:34638-35015 Augustus predicted protein sequence Tomato scaffold549_contigs=4~34638-35015 Transposase_28 PF04195.7 g42721.t1 - 0.15 11.3 0.4 1.2 8.3 0.2 2.1 1 1 1 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:22907-25081 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~22907-25081 PA26 PF04636.8 g19222.t1 - 0.033 12.8 0.2 0.041 12.5 0.2 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:150288-155557 Augustus predicted protein sequence Tomato scaffold748_contigs=11~150288-155557 Trypan_PARP PF05887.6 g11558.t1 - 0.032 14 0.3 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:411116-411490 Augustus predicted protein sequence Tomato scaffold525_contigs=12~411116-411490 CCDC-167 PF15188.1 g38830.t1 - 0.092 12.6 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:200341-200601 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~200341-200601 DUF1601 PF07671.6 g5564.t1 - 0.95 9.1 3.2 4.4 7 0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1601) | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:19571-20193 Augustus predicted protein sequence Tomato scaffold332_contigs=3~19571-20193 Oxysterol_BP PF01237.13 g14260.t1 - 0.0085 14.6 2.9 0.01 14.3 2 1.1 1 0 0 1 1 1 1 Oxysterol-binding protein | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:41671-42371 Augustus predicted protein sequence Tomato scaffold587_contigs=13~41671-42371 zf-RVT PF13966.1 g41368.t1 - 0.012 15.8 0.4 0.037 14.3 0 2 1 1 2 3 3 3 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:135554-135990 Augustus predicted protein sequence Tomato scaffold1330_contigs=13~135554-135990 DUF1406 PF07190.6 g24913.t1 - 0.13 11.9 0 0.18 11.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1406) | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:73892-75253 Augustus predicted protein sequence Tomato scaffold904_contigs=3~73892-75253 CEP44 PF15007.1 g41984.t1 - 0.11 12.1 0 0.17 11.5 0 1.3 1 0 0 1 1 1 0 Centrosomal spindle body, CEP44 | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:90033-90583 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~90033-90583 LZ_Tnp_IS481 PF13011.1 g46933.t1 - 0.26 11.6 0.9 11 6.5 0 2.2 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:788146-789449 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~788146-789449 DUF3245 PF11595.3 g14271.t1 - 0.005 17.1 3.6 0.008 16.4 2.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:87380-87901 Augustus predicted protein sequence Tomato scaffold587_contigs=13~87380-87901 EF-hand_9 PF14658.1 g25091.t1 - 0.027 14.3 0.1 0.063 13.1 0 1.6 1 0 0 1 1 1 0 EF-hand domain | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:27365-27763 Augustus predicted protein sequence Tomato scaffold914_contigs=7~27365-27763 DUF1580 PF07618.6 g46847.t1 - 0.099 12 0.1 0.28 10.5 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1580) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:361620-362297 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~361620-362297 End_N_terminal PF12218.3 g44526.t1 - 0.063 12.7 0 0.14 11.6 0 1.5 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:79712-80907 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~79712-80907 YaaC PF14175.1 g30782.t1 - 0.14 11 0 0.14 11 0 1 1 0 0 1 1 1 0 YaaC-like Protein | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:315898-316910 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~315898-316910 Ribosomal_L15e PF00827.12 g21367.t1 - 0.027 13.9 2 0.046 13.2 1.4 1.4 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:27826-28914 Augustus predicted protein sequence Tomato scaffold798_contigs=6~27826-28914 ATHILA PF03078.10 g48496.t1 - 0.00000028 29.5 0 0.00000036 29.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:96870-97624 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~96870-97624 DUF2339 PF10101.4 g77451.t1 - 0.025 12.8 0.4 0.033 12.4 0.3 1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:400328-401426 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~400328-401426 UBN2 PF14223.1 g51275.t1 - 0.00000047 29.6 0.1 0.000006 26 0 2.1 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:288874-289316 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~288874-289316 NPCBM_assoc PF10633.4 g25467.t1 - 0.17 11.9 0.1 0.3 11.1 0 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:345870-348428 Augustus predicted protein sequence Tomato scaffold928_contigs=4~345870-348428 Lipase_bact_N PF12262.3 g66125.t1 - 0.0043 16.3 0 0.022 13.9 0 1.9 1 1 0 2 2 2 1 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold2151_contigs=4, transcript_loc=scaffold2151_contigs=4:133941-134666 Augustus predicted protein sequence Tomato scaffold2151_contigs=4~133941-134666 Pollen_Ole_e_I PF01190.12 g71440.t1 - 0.00021 21 0 0.00026 20.7 0 1.2 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1162929-1163399 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~1162929-1163399 Calsequestrin PF01216.12 g25146.t1 - 0.053 12.2 0 0.076 11.7 0 1.2 1 0 0 1 1 1 0 Calsequestrin | Ref_seq=scaffold920_contigs=3, transcript_loc=scaffold920_contigs=3:12750-13313 Augustus predicted protein sequence Tomato scaffold920_contigs=3~12750-13313 MSP1a PF11670.3 g69467.t1 - 0.11 12.2 0 0.12 12.1 0 1.1 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:61156-62514 Augustus predicted protein sequence Tomato scaffold2287_contigs=19~61156-62514 Tiny_TM_bacill PF09680.5 g70048.t1 - 0.17 11.3 3.2 1 8.8 2.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold2320_contigs=12, transcript_loc=scaffold2320_contigs=12:13646-13951 Augustus predicted protein sequence Tomato scaffold2320_contigs=12~13646-13951 SH3_3 PF08239.6 g23501.t1 - 0.11 12.7 0 0.16 12.2 0 1.2 1 0 0 1 1 1 0 Bacterial SH3 domain | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:29727-30177 Augustus predicted protein sequence Tomato scaffold862_contigs=2~29727-30177 RVT_3 PF13456.1 g28069.t1 - 0.000000085 31.8 0 0.00000011 31.5 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:208640-208960 Augustus predicted protein sequence Tomato scaffold990_contigs=6~208640-208960 UBN2_2 PF14227.1 g19209.t1 - 0.016 14.7 0 0.019 14.4 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:78014-80004 Augustus predicted protein sequence Tomato scaffold748_contigs=11~78014-80004 DUF2509 PF10713.4 g75335.t1 - 0.092 12.4 0 0.13 12 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2509) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:331745-332209 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~331745-332209 UBN2 PF14223.1 g55499.t1 - 0.12 12.2 0.1 0.16 11.7 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:437948-438267 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~437948-438267 Pox_polyA_pol_C PF12629.2 g58651.t1 - 0.02 14.6 0 0.021 14.5 0 1.1 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase C-terminal domain | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:105823-106110 Augustus predicted protein sequence Tomato scaffold1866_contigs=5~105823-106110 Tna_leader PF08053.6 g5082.t1 - 0.024 14 3.5 3 7.3 0.2 2.4 2 0 0 2 2 2 0 Tryptophanese operon leader peptide | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:305647-307728 Augustus predicted protein sequence Tomato scaffold315_contigs=11~305647-307728 YdjO PF14169.1 g65313.t1 - 0.012 15 0 0.027 13.9 0 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:118465-119100 Augustus predicted protein sequence Tomato scaffold2126_contigs=18~118465-119100 DUF2946 PF11162.3 g7758.t1 - 0.077 13.2 2.4 0.11 12.6 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:242490-243913 Augustus predicted protein sequence Tomato scaffold406_contigs=8~242490-243913 Remorin_N PF03766.8 g83377.t1 - 0.19 11.5 1.8 0.33 10.7 0.8 1.8 2 0 0 2 2 2 0 Remorin, N-terminal region | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:249479-250390 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~249479-250390 DBD_Tnp_Mut PF03108.10 g59852.t1 - 0.000000045 32.5 0 0.000000079 31.7 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:325857-326836 Augustus predicted protein sequence Tomato scaffold1936_contigs=10~325857-326836 HrpB7 PF09486.5 g40608.t1 - 0.041 13.8 0.3 10 6 0 2.1 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:245169-247078 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~245169-247078 PGG PF13962.1 g74783.t1 - 0.1 12.2 0 0.12 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:989249-989624 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~989249-989624 ChlamPMP_M PF07548.6 g7826.t1 - 0.11 12.1 1.4 0.17 11.5 0.8 1.4 1 1 0 1 1 1 0 Chlamydia polymorphic membrane protein middle domain | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:284440-284886 Augustus predicted protein sequence Tomato scaffold408_contigs=6~284440-284886 DUF1985 PF09331.6 g42848.t1 - 0.031 14.1 0.9 0.072 12.8 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:250401-252109 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~250401-252109 HutD PF05962.6 g19665.t1 - 0.066 12.9 0 0.072 12.8 0 1.2 1 0 0 1 1 1 0 HutD | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:27540-27758 Augustus predicted protein sequence Tomato scaffold757_contigs=4~27540-27758 zf-CCHC PF00098.18 g54486.t1 - 0.00084 19.1 2 0.0012 18.6 1.4 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:245770-246120 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~245770-246120 DUF848 PF05852.6 g24660.t1 - 0.044 13.6 3.3 0.05 13.4 1.7 1.5 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:25250-26685 Augustus predicted protein sequence Tomato scaffold893_contigs=2~25250-26685 tRNA-synt_1 PF00133.17 g31956.t1 - 0.11 10.5 0 0.14 10.1 0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) | Ref_seq=scaffold1098_contigs=4, transcript_loc=scaffold1098_contigs=4:5051-9473 Augustus predicted protein sequence Tomato scaffold1098_contigs=4~5051-9473 Remorin_N PF03766.8 g45423.t1 - 0.033 13.9 2 0.069 12.9 1.4 1.5 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:211049-211429 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~211049-211429 ATHILA PF03078.10 g47170.t1 - 0.0017 17 0 0.0018 16.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:92218-92583 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~92218-92583 FLO_LFY PF01698.11 g29633.t1 - 0.016 14 3.7 0.021 13.6 2.5 1.1 1 0 0 1 1 1 0 Floricaula / Leafy protein | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:337948-342944 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~337948-342944 PAT1 PF09770.4 g32463.t1 - 6.4 4.8 8.2 6.8 4.7 5.7 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:378513-379085 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~378513-379085 VLPT PF07122.6 g83823.t1 - 0.035 13.7 3.2 1.4 8.6 0 3.2 3 0 0 3 3 3 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1950764-1951242 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1950764-1951242 Herpes_U5 PF05999.6 g26099.t1 - 0.015 13.8 0.1 0.017 13.7 0.1 1 1 0 0 1 1 1 0 Herpesvirus U5-like family | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:30314-30628 Augustus predicted protein sequence Tomato scaffold943_contigs=4~30314-30628 OKR_DC_1_C PF03711.10 g53741.t1 - 0.015 15.3 0 4.5 7.3 0 2.3 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, C-terminal domain | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:159619-161285 Augustus predicted protein sequence Tomato scaffold1702_contigs=7~159619-161285 RVP_2 PF08284.6 g70703.t1 - 0.00000083 29 0 0.0000011 28.5 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:48587-49355 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~48587-49355 DUF3745 PF12560.3 g37674.t1 - 0.12 12 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3745) | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:1-483 Augustus predicted protein sequence Tomato scaffold1233_contigs=6~1-483 zf-RVT PF13966.1 g28022.t1 - 9.2E-009 35.5 0 0.000000011 35.2 0 1.1 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:13580-13861 Augustus predicted protein sequence Tomato scaffold990_contigs=6~13580-13861 Tis11B_N PF04553.7 g82307.t1 - 0.15 12.2 0.4 0.16 12.1 0.2 1.1 1 0 0 1 1 1 0 Tis11B like protein, N terminus | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:93194-93406 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~93194-93406 DUF713 PF05218.9 g38096.t1 - 0.0035 17 0 0.004 16.8 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF713) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:230071-230355 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~230071-230355 QLQ PF08880.6 g14652.t1 - 0.17 11.2 3.4 0.8 9.1 0.1 3.1 3 1 1 4 4 4 0 QLQ | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:57090-62771 Augustus predicted protein sequence Tomato scaffold599_contigs=8~57090-62771 HemX PF04375.9 g12854.t1 - 1.1 7.7 10.2 1.3 7.5 7.1 1 1 0 0 1 1 1 0 HemX | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:112354-112596 Augustus predicted protein sequence Tomato scaffold561_contigs=10~112354-112596 DUF4489 PF14879.1 g83914.t1 - 0.007 16 0.3 0.0089 15.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4489) | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:99300-99692 Augustus predicted protein sequence Tomato scaffold2762_contigs=5~99300-99692 DMPK_coil PF08826.5 g43356.t1 - 0.25 11.2 4 0.14 12 1 2 2 0 0 2 2 2 0 DMPK coiled coil domain like | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:143367-145315 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~143367-145315 Ribosomal_S28e PF01200.13 g10251.t1 - 0.0097 15.6 0.7 0.018 14.7 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S28e | Ref_seq=scaffold491_contigs=6, transcript_loc=scaffold491_contigs=6:53781-56087 Augustus predicted protein sequence Tomato scaffold491_contigs=6~53781-56087 Tropomyosin PF00261.15 g25078.t1 - 0.015 14.3 0.7 0.023 13.7 0.5 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold911_contigs=13, transcript_loc=scaffold911_contigs=13:17527-18243 Augustus predicted protein sequence Tomato scaffold911_contigs=13~17527-18243 Dynamin_M PF01031.15 g23502.t1 - 0.089 11.5 0 0.11 11.1 0 1.1 1 0 0 1 1 1 0 Dynamin central region | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:30279-30764 Augustus predicted protein sequence Tomato scaffold862_contigs=2~30279-30764 Tn7_TnsC_Int PF11426.3 g33662.t1 - 0.14 11.8 0 0.23 11.1 0 1.3 1 0 0 1 1 1 0 Tn7 transposition regulator TnsC | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:404534-406562 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~404534-406562 SPOB_a PF14689.1 g18161.t1 - 0.074 12.6 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:588599-588886 Augustus predicted protein sequence Tomato scaffold720_contigs=9~588599-588886 NOA36 PF06524.7 g47514.t1 - 0.084 12.1 6.6 0.082 12.1 4.6 1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:230744-230983 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~230744-230983 UBN2 PF14223.1 g67917.t1 - 0.099 12.4 0.1 2.5 7.9 0 2 1 1 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:243666-244116 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~243666-244116 Prenyltransf PF01255.14 g22622.t1 - 0.076 12.1 0 0.1 11.6 0 1.2 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:126181-130092 Augustus predicted protein sequence Tomato scaffold832_contigs=9~126181-130092 DUF948 PF06103.6 g47628.t1 - 0.038 13.8 0.4 0.048 13.5 0.3 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:830155-830415 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~830155-830415 XhlA PF10779.4 g77009.t1 - 0.026 14.4 0.1 0.036 13.9 0 1.2 1 0 0 1 1 1 0 Haemolysin XhlA | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:1561-1884 Augustus predicted protein sequence Tomato scaffold2644_contigs=21~1561-1884 MecA_N PF05223.6 g21295.t1 - 0.1 12.7 0.2 0.14 12.2 0.2 1.1 1 0 0 1 1 1 0 NTF2-like N-terminal transpeptidase domain | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:41735-42148 Augustus predicted protein sequence Tomato scaffold797_contigs=11~41735-42148 Baculo_ME53 PF06061.6 g8516.t1 - 0.012 14.6 0.4 3.1 6.7 0 2.2 2 0 0 2 2 2 0 Baculoviridae ME53 | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:86867-94193 Augustus predicted protein sequence Tomato scaffold428_contigs=8~86867-94193 Pentapeptide_3 PF13576.1 g86211.t1 - 0.036 13.9 0 0.12 12.3 0 1.8 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold2844_contigs=1, transcript_loc=scaffold2844_contigs=1:553-852 Augustus predicted protein sequence Tomato scaffold2844_contigs=1~553-852 DUF3893 PF13032.1 g58329.t1 - 0.026 14.6 0.1 0.03 14.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:88704-88958 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~88704-88958 DEC-1_N PF04625.8 g5751.t1 - 1.4 7.5 7.7 1.7 7.2 5.4 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:74153-74857 Augustus predicted protein sequence Tomato scaffold338_contigs=10~74153-74857 FAM178 PF14816.1 g75458.t1 - 0.0055 15.4 1.5 0.77 8.4 0 2.1 2 0 0 2 2 2 2 Family of unknown function, FAM178 | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:45411-46169 Augustus predicted protein sequence Tomato scaffold2597_contigs=14~45411-46169 PRCC PF10253.4 g13003.t1 - 0.12 13 7.3 0.25 12 0.1 2.3 2 0 0 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:90163-90979 Augustus predicted protein sequence Tomato scaffold562_contigs=3~90163-90979 DUF842 PF05811.8 g87872.t1 - 0.63 9.5 6.3 3.6 7 0.4 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold4634_contigs=1, transcript_loc=scaffold4634_contigs=1:58-612 Augustus predicted protein sequence Tomato scaffold4634_contigs=1~58-612 Phage_integrase PF00589.17 g87610.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:2006-2350 Augustus predicted protein sequence Tomato scaffold3413_contigs=1~2006-2350 Tna_leader PF08053.6 g81026.t1 - 0.88 9 10.5 5.5 6.4 0 4.2 4 1 0 4 4 4 0 Tryptophanese operon leader peptide | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:256715-257227 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~256715-257227 Fzo_mitofusin PF04799.8 g76500.t1 - 0.21 10.9 6 0.12 11.7 2.4 1.8 1 1 1 2 2 2 0 fzo-like conserved region | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:37800-39413 Augustus predicted protein sequence Tomato scaffold2632_contigs=8~37800-39413 zf-CCHC PF00098.18 g66343.t1 - 0.000019 24.3 1.2 0.000019 24.3 0.8 2.3 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:90858-91088 Augustus predicted protein sequence Tomato scaffold2160_contigs=6~90858-91088 DUF4337 PF14235.1 g42803.t1 - 4.1 7.2 6 6.8 6.5 4.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:54609-56128 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~54609-56128 DUF1484 PF07363.6 g80633.t1 - 0.058 13.7 0.1 0.083 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1484) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:104811-105101 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~104811-105101 ATHILA PF03078.10 g1501.t1 - 0.0042 15.7 0.1 0.013 14 0 1.8 2 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:59712-60677 Augustus predicted protein sequence Tomato scaffold204_contigs=2~59712-60677 RVT_3 PF13456.1 g45017.t1 - 0.0000091 25.3 0.2 0.000017 24.4 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:533751-534047 Augustus predicted protein sequence Tomato scaffold1442_contigs=17~533751-534047 DUF668 PF05003.7 g58912.t1 - 0.000073 22.9 1.7 6.5 7 0 3.2 3 0 0 3 3 3 3 Protein of unknown function (DUF668) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:233642-240478 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~233642-240478 ATHILA PF03078.10 g57962.t1 - 2.8E-009 36 0 3.3E-009 35.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:157208-157585 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~157208-157585 DUF1777 PF08648.7 g82695.t1 - 0.019 14.7 0.4 0.022 14.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1777) | Ref_seq=scaffold2748_contigs=28, transcript_loc=scaffold2748_contigs=28:25954-26390 Augustus predicted protein sequence Tomato scaffold2748_contigs=28~25954-26390 DUF2724 PF10893.3 g71080.t1 - 0.13 12.1 0 0.16 11.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:233130-233620 Augustus predicted protein sequence Tomato scaffold2355_contigs=18~233130-233620 Lar_restr_allev PF14354.1 g13969.t1 - 0.011 16 0.1 0.019 15.2 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:87589-89166 Augustus predicted protein sequence Tomato scaffold583_contigs=2~87589-89166 NAM PF02365.10 g70377.t1 - 0.002 18.3 0 0.0029 17.8 0 1.3 1 0 0 1 1 1 1 No apical meristem (NAM) protein | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:9840-10217 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~9840-10217 MCC-bdg_PDZ PF10506.4 g2387.t1 - 0.15 11.9 4.3 1.6 8.6 0.5 2.5 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:8585-11651 Augustus predicted protein sequence Tomato scaffold236_contigs=3~8585-11651 NB-ARC PF00931.17 g33227.t1 - 9.6E-023 80.4 8.2 1.4E-012 47 0.4 2.7 3 0 0 3 3 3 2 NB-ARC domain | Ref_seq=scaffold1122_contigs=3, transcript_loc=scaffold1122_contigs=3:20426-22945 Augustus predicted protein sequence Tomato scaffold1122_contigs=3~20426-22945 TMEMspv1-c74-12 PF11044.3 g48393.t1 - 0.12 11.9 0.4 0.21 11.1 0.3 1.4 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:218268-218645 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~218268-218645 DUF4460 PF14687.1 g8411.t1 - 0.15 11.8 0 0.2 11.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4460) | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:117003-118360 Augustus predicted protein sequence Tomato scaffold426_contigs=7~117003-118360 DUF1883 PF08980.5 g86120.t1 - 0.16 11.5 0 0.29 10.7 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1883) | Ref_seq=scaffold2838_contigs=1, transcript_loc=scaffold2838_contigs=1:4789-5317 Augustus predicted protein sequence Tomato scaffold2838_contigs=1~4789-5317 DUF1985 PF09331.6 g77906.t1 - 0.04 13.7 0.3 0.049 13.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:798263-798703 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~798263-798703 DBD_Tnp_Mut PF03108.10 g77759.t1 - 0.000072 22.2 0.8 0.00012 21.5 0.5 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:267131-270139 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~267131-270139 DUF755 PF05501.6 g22423.t1 - 0.081 12.9 1.2 0.097 12.7 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold829_contigs=1, transcript_loc=scaffold829_contigs=1:19587-19982 Augustus predicted protein sequence Tomato scaffold829_contigs=1~19587-19982 Phage_lambd_GpG PF06894.6 g87182.t1 - 0.082 12.5 0 0.15 11.6 0 1.3 1 0 0 1 1 1 0 Bacteriophage lambda minor tail protein (GpG) | Ref_seq=scaffold2952_contigs=1, transcript_loc=scaffold2952_contigs=1:931-3902 Augustus predicted protein sequence Tomato scaffold2952_contigs=1~931-3902 Apt1 PF10351.4 g84518.t1 - 0.036 12.9 0.2 0.04 12.7 0.1 1 1 0 0 1 1 1 0 Golgi-body localisation protein domain | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:92390-92632 Augustus predicted protein sequence Tomato scaffold2772_contigs=1~92390-92632 Josephin PF02099.12 g75637.t1 - 0.015 14.9 0.2 0.018 14.6 0.1 1.1 1 0 0 1 1 1 0 Josephin | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:152653-152949 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~152653-152949 ATHILA PF03078.10 g33891.t1 - 0.043 12.4 0 0.051 12.1 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:314614-314997 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~314614-314997 Trypan_PARP PF05887.6 g38664.t1 - 1.7 8.4 22.3 1.8 8.3 15.4 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:56690-56902 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~56690-56902 zf-CCHC_5 PF14787.1 g19437.t1 - 0.00023 20.5 5.9 0.00042 19.7 4.1 1.5 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:527151-527512 Augustus predicted protein sequence Tomato scaffold751_contigs=13~527151-527512 DUF3294 PF07957.6 g31823.t1 - 0.029 13.9 1.6 0.032 13.7 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3294) | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:305781-306074 Augustus predicted protein sequence Tomato scaffold1088_contigs=10~305781-306074 DUF594 PF04578.8 g6247.t1 - 0.0039 16.6 0 2.9 7.3 0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF594 | Ref_seq=scaffold356_contigs=12, transcript_loc=scaffold356_contigs=12:14752-18187 Augustus predicted protein sequence Tomato scaffold356_contigs=12~14752-18187 CobW_C PF07683.9 g1660.t1 - 0.034 13.8 0.3 0.057 13.1 0.2 1.5 1 1 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:95297-96873 Augustus predicted protein sequence Tomato scaffold213_contigs=5~95297-96873 DUF4011 PF13195.1 g64476.t1 - 0.044 13.8 0.8 0.044 13.8 0.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4011) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:35071-35990 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~35071-35990 Gly-rich_Ago1 PF12764.2 g46288.t1 - 0.19 12.3 2.4 0.26 11.9 1.6 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1478_contigs=6, transcript_loc=scaffold1478_contigs=6:1-215 Augustus predicted protein sequence Tomato scaffold1478_contigs=6~1-215 HHH_5 PF14520.1 g79951.t1 - 0.011 15.8 0 0.015 15.4 0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:270381-270653 Augustus predicted protein sequence Tomato scaffold2704_contigs=20~270381-270653 DUF3793 PF12672.2 g36448.t1 - 0.091 12.3 0.1 0.72 9.4 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF3793) | Ref_seq=scaffold1194_contigs=2, transcript_loc=scaffold1194_contigs=2:7019-7734 Augustus predicted protein sequence Tomato scaffold1194_contigs=2~7019-7734 PqqD PF05402.7 g74855.t1 - 0.087 12.8 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:107442-107831 Augustus predicted protein sequence Tomato scaffold2571_contigs=16~107442-107831 KIF1B PF12423.3 g29827.t1 - 0.45 10.5 2.6 2.4 8.2 0.6 2.3 2 0 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:209200-209529 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~209200-209529 DUF35_N PF12172.3 g19401.t1 - 0.15 11.9 2.8 0.28 11.1 2 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:367451-367864 Augustus predicted protein sequence Tomato scaffold751_contigs=13~367451-367864 AvrPphF-ORF-2 PF09143.5 g62323.t1 - 0.00047 19.9 4.8 0.16 11.7 0.6 2.1 2 0 0 2 2 2 2 AvrPphF-ORF-2 | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:29165-30133 Augustus predicted protein sequence Tomato scaffold1987_contigs=1~29165-30133 HXXSHH PF07586.6 g85099.t1 - 0.0039 16.1 1 0.0049 15.8 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1552) | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:36136-37337 Augustus predicted protein sequence Tomato scaffold2790_contigs=1~36136-37337 zf-CCHC PF00098.18 g85492.t1 - 0.0071 16.2 0.2 0.011 15.5 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2806_contigs=1, transcript_loc=scaffold2806_contigs=1:18101-19272 Augustus predicted protein sequence Tomato scaffold2806_contigs=1~18101-19272 Integrin_b_cyt PF08725.6 g72475.t1 - 0.055 12.8 0 8.3 5.8 0 2.2 2 0 0 2 2 2 0 Integrin beta cytoplasmic domain | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:251203-253811 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~251203-253811 UPF0193 PF05250.6 g6231.t1 - 0.09 12.3 0.2 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0193) | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:66326-66859 Augustus predicted protein sequence Tomato scaffold355_contigs=5~66326-66859 TPR_7 PF13176.1 g8343.t1 - 0.29 11 1.3 0.57 10.1 0.9 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:423913-425607 Augustus predicted protein sequence Tomato scaffold423_contigs=9~423913-425607 Lys-AminoMut_A PF09043.6 g9655.t1 - 0.0037 15.4 0 1.3 7 0 2.2 2 0 0 2 2 2 2 D-Lysine 5,6-aminomutase alpha subunit | Ref_seq=scaffold464_contigs=10, transcript_loc=scaffold464_contigs=10:22008-25193 Augustus predicted protein sequence Tomato scaffold464_contigs=10~22008-25193 CALCOCO1 PF07888.6 g43159.t1 - 0.0024 16.2 6.3 0.003 15.9 4.3 1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:268082-268893 Augustus predicted protein sequence Tomato scaffold1383_contigs=8~268082-268893 ATHILA PF03078.10 g82448.t1 - 0.002 16.7 0 0.096 11.2 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:82676-83413 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~82676-83413 YcbB PF08664.5 g74806.t1 - 0.082 12.6 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 YcbB domain | Ref_seq=scaffold2569_contigs=14, transcript_loc=scaffold2569_contigs=14:135446-135954 Augustus predicted protein sequence Tomato scaffold2569_contigs=14~135446-135954 Sterile PF03015.14 g35059.t1 - 0.13 12.5 0.1 0.24 11.6 0.1 1.5 1 1 0 1 1 1 0 Male sterility protein | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:73646-75765 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~73646-75765 DUF4219 PF13961.1 g75267.t1 - 0.0032 16.8 0.4 0.0053 16.1 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:1519-2342 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~1519-2342 FAM176 PF14851.1 g83042.t1 - 0.016 14.8 1.1 0.019 14.6 0.8 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:86220-86519 Augustus predicted protein sequence Tomato scaffold2754_contigs=4~86220-86519 YL1 PF05764.8 g76766.t1 - 0.18 11.3 4.4 0.26 10.8 3.1 1.1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:614274-617516 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~614274-617516 PsbP PF01789.11 g7978.t1 - 0.022 14.2 0 0.031 13.7 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:97474-98154 Augustus predicted protein sequence Tomato scaffold413_contigs=6~97474-98154 7tm_1 PF00001.16 g9648.t1 - 0.036 13.1 2.7 0.046 12.8 1.9 1.1 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) | Ref_seq=scaffold463_contigs=2, transcript_loc=scaffold463_contigs=2:52547-53035 Augustus predicted protein sequence Tomato scaffold463_contigs=2~52547-53035 EF-hand_2 PF09068.6 g14009.t1 - 0.089 12.8 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 EF hand | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:194947-195303 Augustus predicted protein sequence Tomato scaffold583_contigs=2~194947-195303 NUDE_C PF04880.8 g18646.t1 - 0.014 15.7 0.8 0.018 15.4 0.5 1.2 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:50635-51024 Augustus predicted protein sequence Tomato scaffold731_contigs=13~50635-51024 Flagellar_rod PF05149.7 g28016.t1 - 0.0042 16.3 2.2 0.0055 15.9 1.5 1.1 1 0 0 1 1 1 1 Paraflagellar rod protein | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:356127-356786 Augustus predicted protein sequence Tomato scaffold989_contigs=10~356127-356786 ASFV_J13L PF05568.6 g39970.t1 - 0.046 13.2 0.2 0.051 13.1 0.2 1.1 1 0 0 1 1 1 0 African swine fever virus J13L protein | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:8347-8784 Augustus predicted protein sequence Tomato scaffold1285_contigs=4~8347-8784 Lectin_N PF03954.9 g83517.t1 - 0.093 12.1 0.1 0.18 11.2 0 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:785561-788627 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~785561-788627 DUF3487 PF11990.3 g22079.t1 - 0.018 14.4 0 2 7.8 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:9126-9627 Augustus predicted protein sequence Tomato scaffold818_contigs=2~9126-9627 B3 PF02362.16 g15420.t1 - 0.0031 17.1 0.1 0.0064 16 0 1.6 1 1 0 1 1 1 1 B3 DNA binding domain | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:462325-464495 Augustus predicted protein sequence Tomato scaffold624_contigs=9~462325-464495 MRI PF15325.1 g30036.t1 - 0.21 12.5 2 0.24 12.3 1.4 1.2 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:313545-313811 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~313545-313811 V_ATPase_I PF01496.14 g62209.t1 - 0.003 15.5 3 0.0039 15.1 2.1 1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:151586-155428 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~151586-155428 Trp_Tyr_perm PF03222.8 g20138.t1 - 0.13 11 0 0.2 10.4 0 1.2 1 0 0 1 1 1 0 Tryptophan/tyrosine permease family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:41579-41926 Augustus predicted protein sequence Tomato scaffold768_contigs=4~41579-41926 CAF-1_p150 PF11600.3 g65193.t1 - 0.38 10 31 0.43 9.9 21.5 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:257075-257296 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~257075-257296 zf-BED PF02892.10 g30311.t1 - 0.015 15 0.7 0.031 14 0.5 1.5 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:23066-25619 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~23066-25619 DUF641 PF04859.7 g50601.t1 - 0.00084 19 1.6 0.001 18.8 1.1 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:169765-170129 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~169765-170129 Prefoldin_2 PF01920.15 g54616.t1 - 0.007 16.1 0.1 0.0088 15.7 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:235444-235782 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~235444-235782 FXR1P_C PF12235.3 g73273.t1 - 0.001 19.2 4 0.0013 18.8 2.8 1.2 1 0 0 1 1 1 1 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2448_contigs=3, transcript_loc=scaffold2448_contigs=3:1-1190 Augustus predicted protein sequence Tomato scaffold2448_contigs=3~1-1190 Ketoacyl-synt_C PF02801.17 g18967.t1 - 0.14 12 1.4 0.3 10.9 0.2 2.1 1 1 1 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:11953-17309 Augustus predicted protein sequence Tomato scaffold740_contigs=1~11953-17309 Keratin PF02422.11 g32384.t1 - 2.3 8.2 8.9 0.62 10 2.6 2.3 1 1 1 2 2 2 0 Keratin | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:5543-7098 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~5543-7098 Prd1-P2 PF09214.6 g51226.t1 - 0.1 11.1 0 0.1 11.1 0 1.1 1 0 0 1 1 1 0 Bacteriophage Prd1, adsorption protein P2 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:82178-85579 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~82178-85579 MTS PF05175.9 g9407.t1 - 0.012 15 0.1 0.022 14.1 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase small domain | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:182832-187627 Augustus predicted protein sequence Tomato scaffold455_contigs=9~182832-187627 Nop14 PF04147.7 g58869.t1 - 0.036 12 9.7 0.039 11.9 6.7 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:23612-24037 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~23612-24037 DUF2847 PF11009.3 g16451.t1 - 0.047 13.2 0.1 0.075 12.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:147112-147603 Augustus predicted protein sequence Tomato scaffold671_contigs=7~147112-147603 UBN2 PF14223.1 g26854.t1 - 0.00096 18.9 0.6 0.0021 17.8 0 1.8 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:207768-210068 Augustus predicted protein sequence Tomato scaffold961_contigs=8~207768-210068 DUF1104 PF06518.6 g79289.t1 - 0.18 11.9 6.5 0.25 11.4 4.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:175633-178230 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~175633-178230 FH2 PF02181.18 g51926.t1 - 0.008 15.1 0.1 0.0099 14.7 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:17146-17637 Augustus predicted protein sequence Tomato scaffold1627_contigs=5~17146-17637 DUF3552 PF12072.3 g35110.t1 - 0.058 12.6 1.4 0.063 12.4 1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:263299-264760 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~263299-264760 Cementoin PF10511.4 g84003.t1 - 0.23 11.2 0.8 0.57 10 0.1 2 2 0 0 2 2 2 0 Trappin protein transglutaminase binding domain | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:99501-100605 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~99501-100605 HTH_25 PF13413.1 g14387.t1 - 0.0084 15.7 0.1 0.013 15 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:149751-150179 Augustus predicted protein sequence Tomato scaffold594_contigs=19~149751-150179 DUF605 PF04652.11 g3169.t1 - 1.6 8 12.4 1.8 7.9 8.6 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:37166-37597 Augustus predicted protein sequence Tomato scaffold261_contigs=2~37166-37597 Peptidase_S58 PF03576.9 g85350.t1 - 0.09 11.9 0.1 0.094 11.8 0.1 1.1 1 0 0 1 1 1 0 Peptidase family S58 | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:1026-1307 Augustus predicted protein sequence Tomato scaffold2801_contigs=1~1026-1307 PsbJ PF01788.12 g45395.t1 - 4.2 7 6.3 0.48 10 0.6 2.1 2 0 0 2 2 2 0 PsbJ | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:68236-69185 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~68236-69185 ATHILA PF03078.10 g434.t1 - 0.00000026 29.6 0 0.00000028 29.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:45957-46226 Augustus predicted protein sequence Tomato scaffold36_contigs=4~45957-46226 DBD_Tnp_Mut PF03108.10 g56336.t1 - 6.6E-009 35.2 0.1 0.000000011 34.5 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:133595-134131 Augustus predicted protein sequence Tomato scaffold1801_contigs=9~133595-134131 CAF-1_p150 PF11600.3 g14714.t1 - 0.0000062 25.7 25 0.00001 25 17.3 1.3 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:255247-256211 Augustus predicted protein sequence Tomato scaffold599_contigs=8~255247-256211 SpoVA PF03862.8 g19117.t1 - 0.12 12.5 0 0.15 12.1 0 1.1 1 0 0 1 1 1 0 SpoVA protein | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:228142-229303 Augustus predicted protein sequence Tomato scaffold744_contigs=4~228142-229303 DUF4628 PF15429.1 g14840.t1 - 0.023 14.1 2.1 0.029 13.8 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4628) | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:70652-71104 Augustus predicted protein sequence Tomato scaffold607_contigs=8~70652-71104 DUF4096 PF13340.1 g72502.t1 - 1.6 8.6 9.8 3.4 7.6 6.8 1.6 1 1 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:3506-3913 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~3506-3913 DNA_pol_B_exo1 PF03104.14 g33013.t1 - 0.087 11.6 0 0.11 11.2 0 1.1 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:32768-33372 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~32768-33372 HTH_8 PF02954.14 g52242.t1 - 0.11 12 0.4 0.74 9.3 0 2.4 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:13461-14095 Augustus predicted protein sequence Tomato scaffold1634_contigs=13~13461-14095 DUF2237 PF09996.4 g26777.t1 - 0.11 11.9 0.2 5.9 6.4 0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2237) | Ref_seq=scaffold960_contigs=13, transcript_loc=scaffold960_contigs=13:20816-21902 Augustus predicted protein sequence Tomato scaffold960_contigs=13~20816-21902 ATHILA PF03078.10 g41089.t1 - 0.000052 22 0.4 0.00016 20.4 0 1.9 3 0 0 3 3 3 1 ATHILA ORF-1 family | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:545970-546778 Augustus predicted protein sequence Tomato scaffold1320_contigs=26~545970-546778 DUF2881 PF11087.3 g22081.t1 - 0.064 12.7 0.4 0.83 9.1 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2881) | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:20417-21387 Augustus predicted protein sequence Tomato scaffold818_contigs=2~20417-21387 PPR PF01535.15 g68456.t1 - 0.37 10.8 4.9 1.3 9.1 0.2 3.1 3 0 0 3 3 3 0 PPR repeat | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:267340-267660 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~267340-267660 Kinesin-related PF06548.6 g18857.t1 - 0.085 11.3 0.2 0.098 11.2 0.1 1 1 0 0 1 1 1 0 Kinesin-related | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:730843-732815 Augustus predicted protein sequence Tomato scaffold731_contigs=13~730843-732815 NOA36 PF06524.7 g57893.t1 - 0.03 13.5 5.3 0.037 13.3 3.7 1.2 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:264417-270363 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~264417-270363 QLQ PF08880.6 g74295.t1 - 0.018 14.4 0.4 0.037 13.4 0.1 1.7 1 1 1 2 2 2 0 QLQ | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:29924-30391 Augustus predicted protein sequence Tomato scaffold2530_contigs=9~29924-30391 DXP_reductoisom PF02670.11 g57649.t1 - 0.0034 17.9 0.3 0.0062 17 0.2 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:151367-152451 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~151367-152451 Ribosomal_60s PF00428.14 g20708.t1 - 0.032 14.6 3 0.049 14 2.1 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:66620-68624 Augustus predicted protein sequence Tomato scaffold779_contigs=3~66620-68624 LSM PF01423.17 g37637.t1 - 0.061 12.8 0.1 0.23 11 0 2 2 1 0 2 2 2 0 LSM domain | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:60446-61175 Augustus predicted protein sequence Tomato scaffold1225_contigs=7~60446-61175 DUF4219 PF13961.1 g47197.t1 - 0.0001 21.5 0.7 0.00035 19.9 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:197858-198424 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~197858-198424 DUF1921 PF09081.5 g56140.t1 - 0.0037 17.2 0 3.6 7.6 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1921) | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:39181-40002 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~39181-40002 DUF2360 PF10152.4 g27784.t1 - 0.12 12.6 1.1 0.15 12.3 0.7 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:707386-707775 Augustus predicted protein sequence Tomato scaffold983_contigs=13~707386-707775 rpo132 PF12415.3 g18703.t1 - 0.0042 16 0.6 2.6 7 0 2.4 2 0 0 2 2 2 2 Poxvirus DNA dependent RNA polymerase | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:218786-222666 Augustus predicted protein sequence Tomato scaffold731_contigs=13~218786-222666 DUF3416 PF11896.3 g42743.t1 - 0.1 12.5 0 0.14 12 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:113289-113973 Augustus predicted protein sequence Tomato scaffold1371_contigs=10~113289-113973 zf-CCHC PF00098.18 g43308.t1 - 0.000074 22.4 0.7 0.00014 21.5 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:12879-13774 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~12879-13774 ATHILA PF03078.10 g61446.t1 - 0.000031 22.7 0.1 0.2 10.2 0.1 3.1 3 0 0 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:248389-259067 Augustus predicted protein sequence Tomato scaffold1970_contigs=14~248389-259067 CitX PF03802.9 g62719.t1 - 0.062 12.7 0 0.066 12.6 0 1.1 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:524970-525191 Augustus predicted protein sequence Tomato scaffold2001_contigs=20~524970-525191 zf-RVT PF13966.1 g81328.t1 - 0.000029 24.2 0.4 0.000062 23.2 0.2 1.5 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:347219-351373 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~347219-351373 Phage_P2_GpE PF06528.7 g79885.t1 - 0.0035 16.7 1.1 0.0082 15.5 0.8 1.7 1 1 0 1 1 1 1 Phage P2 GpE | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:134035-134412 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~134035-134412 Pox_Ag35 PF03286.9 g69369.t1 - 0.25 10.8 4.7 0.33 10.4 3.3 1.2 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:16041-16685 Augustus predicted protein sequence Tomato scaffold2272_contigs=16~16041-16685 v110 PF01639.12 g78112.t1 - 2.8 7.5 5.4 6.5 6.3 3.7 1.6 1 1 0 1 1 1 0 Viral family 110 | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:237061-237468 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~237061-237468 FlxA PF14282.1 g64957.t1 - 0.041 13.8 2 0.041 13.8 1.4 1.9 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:71098-71580 Augustus predicted protein sequence Tomato scaffold2105_contigs=7~71098-71580 Abhydrolase_2 PF02230.11 g55506.t1 - 0.18 11.2 0.4 3.1 7.1 0 2 1 1 1 2 2 2 0 Phospholipase/Carboxylesterase | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:454281-454610 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~454281-454610 T6SS-SciN PF12790.2 g14583.t1 - 0.088 12.4 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Type VI secretion lipoprotein | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:239427-239819 Augustus predicted protein sequence Tomato scaffold597_contigs=5~239427-239819 DUF1675 PF07897.6 g46340.t1 - 0.038 13.8 1.4 0.047 13.5 1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1675) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:76670-81334 Augustus predicted protein sequence Tomato scaffold1480_contigs=4~76670-81334 DUF641 PF04859.7 g82329.t1 - 0.063 13 2.8 0.11 12.2 1.9 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:184668-184928 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~184668-184928 TOBE PF03459.12 g37662.t1 - 0.27 11.3 1.5 17 5.6 0 3.3 1 1 2 4 4 4 0 TOBE domain | Ref_seq=scaffold1227_contigs=6, transcript_loc=scaffold1227_contigs=6:18405-19965 Augustus predicted protein sequence Tomato scaffold1227_contigs=6~18405-19965 DUF972 PF06156.8 g30817.t1 - 0.18 12.1 1.8 0.26 11.6 0.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:454127-456460 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~454127-456460 Ependymin PF00811.13 g45683.t1 - 0.042 13.5 0 0.077 12.7 0 1.4 1 0 0 1 1 1 0 Ependymin | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:370362-373208 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~370362-373208 ING PF12998.2 g77263.t1 - 0.075 13.3 2.3 0.28 11.5 0.7 2.2 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:166128-167146 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~166128-167146 MIS13 PF08202.6 g49633.t1 - 0.055 12.5 0.2 0.064 12.3 0.1 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:229270-229482 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~229270-229482 ATHILA PF03078.10 g4361.t1 - 1.8E-013 49.9 0 2E-013 49.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold297_contigs=3, transcript_loc=scaffold297_contigs=3:136993-137532 Augustus predicted protein sequence Tomato scaffold297_contigs=3~136993-137532 ING PF12998.2 g17992.t1 - 0.035 14.3 0.1 1.6 9 0.1 2.1 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:134497-134967 Augustus predicted protein sequence Tomato scaffold720_contigs=9~134497-134967 HrpB7 PF09486.5 g76709.t1 - 0.28 11.1 4.6 0.31 10.9 1.8 1.8 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:404653-405622 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~404653-405622 DUF4201 PF13870.1 g60105.t1 - 0.012 15.1 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:54563-55024 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~54563-55024 Glyco_hydro_85 PF03644.8 g23333.t1 - 0.12 11.4 0 0.35 9.9 0 1.6 1 1 1 2 2 2 0 Glycosyl hydrolase family 85 | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:3641-5627 Augustus predicted protein sequence Tomato scaffold858_contigs=4~3641-5627 Ribosomal_60s PF00428.14 g20716.t1 - 2.8 8.3 9.1 3.9 7.9 6.3 1.2 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:80430-80747 Augustus predicted protein sequence Tomato scaffold779_contigs=3~80430-80747 DUF4172 PF13776.1 g45601.t1 - 0.11 12.6 0.3 0.23 11.5 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:13740-14078 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~13740-14078 Phage_F PF02305.12 g28318.t1 - 0.015 13.9 0 0.019 13.5 0 1.1 1 0 0 1 1 1 0 Capsid protein (F protein) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:267796-269852 Augustus predicted protein sequence Tomato scaffold994_contigs=5~267796-269852 FadA PF09403.5 g77792.t1 - 0.45 10.5 3.2 0.5 10.3 2.2 1 1 0 0 1 1 1 0 Adhesion protein FadA | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:383004-383240 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~383004-383240 ATHILA PF03078.10 g47247.t1 - 0.0000057 25.1 0 0.0000065 25 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:334833-335309 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~334833-335309 PsbP PF01789.11 g27284.t1 - 0.09 12.2 0 0.15 11.5 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:248794-249382 Augustus predicted protein sequence Tomato scaffold974_contigs=15~248794-249382 DUF2743 PF10899.3 g76906.t1 - 0.019 14.3 5.3 0.022 14.1 3.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:303516-303824 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~303516-303824 Lsr2 PF11774.3 g17713.t1 - 1.9 8.4 8.6 0.089 12.7 1.9 1.8 2 0 0 2 2 2 0 Lsr2 | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:315988-319157 Augustus predicted protein sequence Tomato scaffold713_contigs=10~315988-319157 AlaDh_PNT_C PF01262.16 g83093.t1 - 0.027 14 0 0.034 13.6 0 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:167685-168307 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~167685-168307 UBN2 PF14223.1 g37064.t1 - 0.018 14.8 0.6 0.038 13.7 0.4 1.5 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:137594-139269 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~137594-139269 DUF506 PF04720.7 g80662.t1 - 0.12 11.9 0.8 0.16 11.5 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF506) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:206501-207172 Augustus predicted protein sequence Tomato scaffold2715_contigs=7~206501-207172 CTP_transf_3 PF02348.14 g82868.t1 - 0.091 12.3 0.8 0.12 11.9 0.5 1.2 1 0 0 1 1 1 0 Cytidylyltransferase | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:85893-86282 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~85893-86282 DUF3682 PF12446.3 g76360.t1 - 0.085 13.1 0.1 0.085 13.1 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3682) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:172304-172642 Augustus predicted protein sequence Tomato scaffold2624_contigs=4~172304-172642 DUF4290 PF14123.1 g75634.t1 - 0.0043 16.2 0.2 0.0071 15.5 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4290) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:145698-146027 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~145698-146027 Peptidase_S46 PF10459.4 g6677.t1 - 0.0075 14.7 1.3 0.0088 14.5 0.9 1.1 1 0 0 1 1 1 1 Peptidase S46 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:249677-250645 Augustus predicted protein sequence Tomato scaffold380_contigs=11~249677-250645 MtrC PF04211.8 g76784.t1 - 0.014 14.4 0 0.015 14.3 0 1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:660538-660831 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~660538-660831 TFIIS_C PF01096.13 g86308.t1 - 0.15 11.6 0 0.28 10.8 0 1.5 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) | Ref_seq=scaffold2850_contigs=1, transcript_loc=scaffold2850_contigs=1:39288-39602 Augustus predicted protein sequence Tomato scaffold2850_contigs=1~39288-39602 PmbA_TldD PF01523.11 g76328.t1 - 0.04 13.1 0 0.047 12.9 0 1.1 1 0 0 1 1 1 0 Putative modulator of DNA gyrase | Ref_seq=scaffold2623_contigs=9, transcript_loc=scaffold2623_contigs=9:101657-102313 Augustus predicted protein sequence Tomato scaffold2623_contigs=9~101657-102313 rpo132 PF12415.3 g57159.t1 - 0.063 12.2 0 0.12 11.2 0 1.4 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:23290-25185 Augustus predicted protein sequence Tomato scaffold1828_contigs=4~23290-25185 Apelin PF15360.1 g62525.t1 - 0.0017 18.4 12.6 0.25 11.5 0.7 3.4 3 0 0 3 3 3 3 APJ endogenous ligand | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:5168-7602 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~5168-7602 Tropomyosin PF00261.15 g24532.t1 - 0.0099 14.9 1.9 0.012 14.6 1.3 1.2 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:44951-47538 Augustus predicted protein sequence Tomato scaffold886_contigs=4~44951-47538 P53_tetramer PF07710.6 g55356.t1 - 0.032 13.3 0 0.054 12.6 0 1.3 1 0 0 1 1 1 0 P53 tetramerisation motif | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:72854-73201 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~72854-73201 AAA_7 PF12775.2 g37742.t1 - 0.04 12.9 0 0.051 12.6 0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:165467-166562 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~165467-166562 DBD_Tnp_Mut PF03108.10 g13170.t1 - 0.000071 22.3 0.1 0.00013 21.4 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:678692-679342 Augustus predicted protein sequence Tomato scaffold568_contigs=22~678692-679342 VQ PF05678.9 g71305.t1 - 0.0000092 24.5 1.4 0.000018 23.6 0 2.3 2 0 0 2 2 2 1 VQ motif | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:256596-257366 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~256596-257366 Pro_isomerase PF00160.16 g53533.t1 - 0.049 13.8 0 0.084 13 0 1.4 2 0 0 2 2 2 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | Ref_seq=scaffold1693_contigs=10, transcript_loc=scaffold1693_contigs=10:216327-217353 Augustus predicted protein sequence Tomato scaffold1693_contigs=10~216327-217353 TAF1D PF15333.1 g59724.t1 - 0.093 12.5 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 TATA box-binding protein-associated factor 1D | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:108566-109382 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~108566-109382 NPIP PF06409.6 g59251.t1 - 0.12 11.1 1.7 0.13 10.9 1.2 1.1 1 0 0 1 1 1 0 Nuclear pore complex interacting protein (NPIP) | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:53191-53508 Augustus predicted protein sequence Tomato scaffold1904_contigs=8~53191-53508 Spindle_Spc25 PF08234.7 g27252.t1 - 0.12 12.3 0 3 7.9 0 2.2 2 0 0 2 2 2 0 Chromosome segregation protein Spc25 | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:145887-146900 Augustus predicted protein sequence Tomato scaffold974_contigs=15~145887-146900 Jnk-SapK_ap_N PF09744.4 g45077.t1 - 0.12 12.3 0.7 0.15 12 0.5 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:64603-66161 Augustus predicted protein sequence Tomato scaffold1443_contigs=30~64603-66161 CCDC155 PF14662.1 g62251.t1 - 0.0067 16 2.6 0.0091 15.6 1.8 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:286264-287114 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~286264-287114 TRAP_alpha PF03896.11 g69111.t1 - 0.42 9.5 4 0.89 8.4 2.8 1.5 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:17123-18079 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~17123-18079 BUD22 PF09073.5 g32994.t1 - 0.19 10.7 30.2 0.22 10.5 21 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1110_contigs=2, transcript_loc=scaffold1110_contigs=2:26054-26763 Augustus predicted protein sequence Tomato scaffold1110_contigs=2~26054-26763 Trehalase PF01204.13 g83831.t1 - 0.023 13.3 4.7 0.037 12.6 3.3 1.3 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1965378-1967211 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1965378-1967211 Gln-synt_C PF00120.19 g66717.t1 - 0.093 11.8 0.2 0.092 11.8 0.1 1 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:148632-148862 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~148632-148862 NAM-associated PF14303.1 g63257.t1 - 0.62 10.3 3.1 0.85 9.9 2.2 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:58524-60943 Augustus predicted protein sequence Tomato scaffold2033_contigs=2~58524-60943 Endotoxin_N PF03945.9 g7159.t1 - 0.0052 16.2 0 0.0079 15.6 0 1.2 1 0 0 1 1 1 1 delta endotoxin, N-terminal domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:302555-303964 Augustus predicted protein sequence Tomato scaffold387_contigs=7~302555-303964 FH2 PF02181.18 g83551.t1 - 0.0064 15.4 0.1 0.0078 15.1 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:911054-911500 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~911054-911500 S1 PF00575.18 g61297.t1 - 0.0078 16.2 0.1 0.01 15.8 0.1 1.3 1 0 0 1 1 1 1 S1 RNA binding domain | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:123065-123292 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~123065-123292 Erythro-docking PF09277.6 g52805.t1 - 1.5 8.5 3.7 0.75 9.5 0.4 2 2 1 1 3 3 3 0 Erythronolide synthase, docking | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:31862-32284 Augustus predicted protein sequence Tomato scaffold1648_contigs=6~31862-32284 DUF4135 PF13575.1 g46210.t1 - 0.097 11.6 0.1 0.13 11.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:536678-537764 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~536678-537764 IMS_HHH PF11798.3 g55385.t1 - 0.079 13 0 1.1 9.3 0 2.5 2 0 0 2 2 2 0 IMS family HHH motif | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:26494-27277 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~26494-27277 CobT PF06213.7 g10635.t1 - 0.73 8.9 15.5 0.84 8.7 10.8 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:83972-84469 Augustus predicted protein sequence Tomato scaffold503_contigs=7~83972-84469 Imm40 PF15582.1 g32069.t1 - 0.14 10.8 0.1 0.18 10.5 0.1 1.1 1 0 0 1 1 1 0 Immunity protein 40 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:271415-272391 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~271415-272391 ELFV_dehydrog_N PF02812.13 g54749.t1 - 0.059 12.9 0 0.068 12.7 0 1.1 1 0 0 1 1 1 0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:58424-58687 Augustus predicted protein sequence Tomato scaffold1728_contigs=6~58424-58687 ChlI PF13541.1 g39976.t1 - 0.037 13.5 0.2 7.1 6.1 0 2.4 2 1 0 2 2 2 0 Subunit ChlI of Mg-chelatase | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:16909-17577 Augustus predicted protein sequence Tomato scaffold1285_contigs=4~16909-17577 HAUS-augmin3 PF14932.1 g85589.t1 - 0.0047 16.1 1.2 0.0078 15.4 0.8 1.3 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:49167-49821 Augustus predicted protein sequence Tomato scaffold2810_contigs=1~49167-49821 PsbP PF01789.11 g20676.t1 - 0.059 12.8 0 0.093 12.1 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:132669-133211 Augustus predicted protein sequence Tomato scaffold778_contigs=11~132669-133211 Neisseria_TspB PF05616.8 g69295.t1 - 0.21 9.9 11.1 0.24 9.7 7.7 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2269_contigs=7, transcript_loc=scaffold2269_contigs=7:24180-24521 Augustus predicted protein sequence Tomato scaffold2269_contigs=7~24180-24521 DUF550 PF04447.7 g60634.t1 - 0.042 13.4 0.4 0.066 12.8 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF550) | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:181388-184613 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~181388-184613 IFP_35_N PF07334.8 g59287.t1 - 0.04 13.8 0.1 0.065 13.2 0.1 1.5 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:225877-227021 Augustus predicted protein sequence Tomato scaffold1904_contigs=8~225877-227021 DUF4172 PF13776.1 g1937.t1 - 0.024 14.7 0.1 0.05 13.7 0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:208276-208581 Augustus predicted protein sequence Tomato scaffold219_contigs=6~208276-208581 zf-BED PF02892.10 g51472.t1 - 0.061 13 3.3 0.14 11.9 2.3 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1614_contigs=5, transcript_loc=scaffold1614_contigs=5:130831-138038 Augustus predicted protein sequence Tomato scaffold1614_contigs=5~130831-138038 UBN2 PF14223.1 g37568.t1 - 0.015 15 0 0.019 14.7 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:223213-224392 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~223213-224392 DUF937 PF06078.6 g75674.t1 - 0.0046 17.1 0 30 4.8 0 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF937) | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:52551-53630 Augustus predicted protein sequence Tomato scaffold2606_contigs=15~52551-53630 dTMP_synthase PF02593.9 g65923.t1 - 0.00025 20.4 0.1 0.2 10.9 0 2 1 1 1 2 2 2 2 Thymidylate synthase | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:177541-178096 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~177541-178096 Strep_SA_rep PF06696.6 g846.t1 - 1.3 8.9 5.8 6.4 6.6 4 2 1 1 0 1 1 1 0 Streptococcal surface antigen repeat | Ref_seq=scaffold156_contigs=1, transcript_loc=scaffold156_contigs=1:7915-8223 Augustus predicted protein sequence Tomato scaffold156_contigs=1~7915-8223 CAF-1_p150 PF11600.3 g38415.t1 - 0.055 12.8 34.3 0.071 12.4 23.8 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1243_contigs=3, transcript_loc=scaffold1243_contigs=3:18676-19272 Augustus predicted protein sequence Tomato scaffold1243_contigs=3~18676-19272 LRS4 PF10422.4 g85629.t1 - 1.7 7.9 7.4 2 7.6 5.1 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:45387-45744 Augustus predicted protein sequence Tomato scaffold2812_contigs=1~45387-45744 RVT_3 PF13456.1 g34675.t1 - 0.0049 16.6 0 0.0073 16 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1154_contigs=1, transcript_loc=scaffold1154_contigs=1:4002-4421 Augustus predicted protein sequence Tomato scaffold1154_contigs=1~4002-4421 MRP-S32 PF10210.4 g16497.t1 - 0.071 13.4 0.7 0.12 12.6 0.5 1.3 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:58314-59580 Augustus predicted protein sequence Tomato scaffold672_contigs=7~58314-59580 CHDCT2 PF08074.6 g71978.t1 - 0.047 13.4 0 0.063 13 0 1.1 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:532241-532832 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~532241-532832 DivIC PF04977.10 g13612.t1 - 0.0022 17.4 5.5 1.8 8.1 0 3.2 2 1 1 3 3 3 2 Septum formation initiator | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:123453-123947 Augustus predicted protein sequence Tomato scaffold578_contigs=5~123453-123947 CAP_GLY PF01302.20 g50327.t1 - 0.096 12.3 0 0.41 10.3 0 1.8 2 0 0 2 2 2 0 CAP-Gly domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:64888-65148 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~64888-65148 zf-dskA_traR PF01258.12 g26710.t1 - 0.056 13.1 0.7 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:54579-55930 Augustus predicted protein sequence Tomato scaffold958_contigs=5~54579-55930 Sugarporin_N PF11471.3 g23727.t1 - 0.48 10.1 2.7 0.73 9.5 1.6 1.5 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:142991-145395 Augustus predicted protein sequence Tomato scaffold865_contigs=7~142991-145395 Cu-binding_MopE PF11617.3 g46665.t1 - 0.08 12.7 0 0.17 11.6 0 1.6 1 0 0 1 1 1 0 Protein metal binding site | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:90430-90843 Augustus predicted protein sequence Tomato scaffold1484_contigs=2~90430-90843 Peptidase_S49_N PF08496.5 g47893.t1 - 0.2 11.4 2.9 0.21 11.3 2 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:17272-17553 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~17272-17553 HNH_2 PF13391.1 g27466.t1 - 1.2 8.9 5.3 1.7 8.4 3.6 1.5 1 1 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:206140-206469 Augustus predicted protein sequence Tomato scaffold980_contigs=13~206140-206469 DUF1985 PF09331.6 g6193.t1 - 0.01 15.6 0 0.014 15.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:88143-89177 Augustus predicted protein sequence Tomato scaffold353_contigs=4~88143-89177 Antimicrobial21 PF14861.1 g1887.t1 - 4.2 6.9 6.2 7 6.2 4.3 1.3 1 0 0 1 1 1 0 Plant antimicrobial peptide | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:199022-199243 Augustus predicted protein sequence Tomato scaffold218_contigs=4~199022-199243 Fusion_gly PF00523.13 g71261.t1 - 0.025 12.6 0.1 0.031 12.3 0 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0 | Ref_seq=scaffold2364_contigs=4, transcript_loc=scaffold2364_contigs=4:76230-77213 Augustus predicted protein sequence Tomato scaffold2364_contigs=4~76230-77213 FH2 PF02181.18 g72201.t1 - 0.03 13.1 0.1 0.036 12.9 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:607110-607400 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~607110-607400 zf-CCHC PF00098.18 g37073.t1 - 0.00053 19.7 0.6 0.00053 19.7 0.4 1.7 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:168142-168960 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~168142-168960 DUF72 PF01904.13 g75774.t1 - 0.052 13.2 0 0.052 13.2 0 1 1 0 0 1 1 1 0 Protein of unknown function DUF72 | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:86792-87034 Augustus predicted protein sequence Tomato scaffold2610_contigs=20~86792-87034 Herpes_US12 PF05363.7 g4112.t1 - 0.016 15.6 0.1 0.039 14.4 0 1.6 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:23881-25044 Augustus predicted protein sequence Tomato scaffold293_contigs=5~23881-25044 DUF1147 PF06615.6 g19739.t1 - 0.052 13.3 0.1 0.091 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1147) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:267026-267481 Augustus predicted protein sequence Tomato scaffold757_contigs=4~267026-267481 PhaP_Bmeg PF09602.5 g36452.t1 - 0.061 13.1 0 0.061 13.1 0 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold1195_contigs=2, transcript_loc=scaffold1195_contigs=2:16823-17035 Augustus predicted protein sequence Tomato scaffold1195_contigs=2~16823-17035 Toxin_57 PF15535.1 g37196.t1 - 0.08 13 0 1.6 8.7 0 2.2 2 0 0 2 2 2 0 Putative toxin 57 | Ref_seq=scaffold1214_contigs=4, transcript_loc=scaffold1214_contigs=4:116733-117161 Augustus predicted protein sequence Tomato scaffold1214_contigs=4~116733-117161 Phage_GP20 PF06810.6 g67121.t1 - 0.01 15.2 4.7 0.024 14.1 3.2 1.5 1 0 0 1 1 1 0 Phage minor structural protein GP20 | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:37808-40157 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~37808-40157 DUF2851 PF11013.3 g19356.t1 - 0.14 10.8 0.1 0.16 10.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:208861-209559 Augustus predicted protein sequence Tomato scaffold751_contigs=13~208861-209559 Toxin-JAB1 PF15659.1 g79530.t1 - 0.084 12.7 0.4 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 JAB-like toxin 1 | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:182701-183425 Augustus predicted protein sequence Tomato scaffold2697_contigs=36~182701-183425 Pet127 PF08634.5 g75642.t1 - 0.12 11.5 0 0.67 9 0 1.9 2 0 0 2 2 2 0 Mitochondrial protein Pet127 | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:167830-169629 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~167830-169629 WD40_alt PF14077.1 g25682.t1 - 0.017 14.7 0.2 0.047 13.3 0.2 1.8 1 0 0 1 1 1 0 Alternative WD40 repeat motif | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:204047-204385 Augustus predicted protein sequence Tomato scaffold930_contigs=4~204047-204385 DUF1582 PF07621.6 g86975.t1 - 0.056 13.4 0.1 2.5 8.2 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1582) | Ref_seq=scaffold2917_contigs=1, transcript_loc=scaffold2917_contigs=1:8726-8959 Augustus predicted protein sequence Tomato scaffold2917_contigs=1~8726-8959 Nucleoplasmin PF03066.10 g8423.t1 - 0.026 14 5.6 0.027 14 3.9 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:181782-182096 Augustus predicted protein sequence Tomato scaffold426_contigs=7~181782-182096 THDPS_N_2 PF14805.1 g87072.t1 - 0.096 12.5 0.5 0.3 10.9 0.2 1.8 1 1 1 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal | Ref_seq=scaffold2932_contigs=1, transcript_loc=scaffold2932_contigs=1:18280-18582 Augustus predicted protein sequence Tomato scaffold2932_contigs=1~18280-18582 HTH_8 PF02954.14 g69929.t1 - 0.0016 17.9 0 0.81 9.2 0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:18617-18829 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~18617-18829 Vir_act_alpha_C PF10400.4 g9995.t1 - 0.033 14.5 1.3 0.041 14.2 0.1 1.7 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:127325-127687 Augustus predicted protein sequence Tomato scaffold481_contigs=9~127325-127687 DUF4328 PF14219.1 g75342.t1 - 0.008 15.4 0.3 0.0081 15.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4328) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:31418-31778 Augustus predicted protein sequence Tomato scaffold2592_contigs=44~31418-31778 NAM-associated PF14303.1 g67333.t1 - 0.0018 18.6 3.6 0.0021 18.3 2.5 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:280996-281295 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~280996-281295 ATHILA PF03078.10 g7609.t1 - 0.048 12.2 0 0.048 12.2 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:345847-346440 Augustus predicted protein sequence Tomato scaffold404_contigs=9~345847-346440 Matrilin_ccoil PF10393.4 g87460.t1 - 0.0021 17.4 0 0.57 9.5 0 2.5 2 0 0 2 2 2 2 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3109_contigs=1, transcript_loc=scaffold3109_contigs=1:1702-3545 Augustus predicted protein sequence Tomato scaffold3109_contigs=1~1702-3545 GalKase_gal_bdg PF10509.4 g81252.t1 - 0.0076 15.4 0 0.013 14.7 0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:95549-97563 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~95549-97563 CobT PF06213.7 g83133.t1 - 0.054 12.6 4.1 0.064 12.3 2.8 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:109962-111967 Augustus predicted protein sequence Tomato scaffold2756_contigs=5~109962-111967 DUF4201 PF13870.1 g50524.t1 - 0.044 13.2 6.6 0.036 13.5 2.2 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:105697-106434 Augustus predicted protein sequence Tomato scaffold1566_contigs=4~105697-106434 RVT_3 PF13456.1 g62.t1 - 0.0029 17.3 0 0.0043 16.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:65695-66236 Augustus predicted protein sequence Tomato scaffold3_contigs=2~65695-66236 YoaP PF14268.1 g38867.t1 - 0.044 13 3.2 0.21 10.8 0.1 2.4 1 1 1 2 2 2 0 YoaP-like | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:68703-68975 Augustus predicted protein sequence Tomato scaffold1253_contigs=5~68703-68975 CDC45 PF02724.9 g77329.t1 - 0.0044 15.1 12.4 0.0041 15.2 8.6 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:35647-36418 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~35647-36418 TFIIF_alpha PF05793.7 g84685.t1 - 0.4 9 23.7 0.41 8.9 16.4 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:72802-73074 Augustus predicted protein sequence Tomato scaffold2777_contigs=1~72802-73074 Stb3 PF10330.4 g82402.t1 - 0.11 12.1 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 Putative Sin3 binding protein | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:77556-78020 Augustus predicted protein sequence Tomato scaffold2742_contigs=4~77556-78020 DUF605 PF04652.11 g15971.t1 - 2.9 7.2 12.2 3.3 7 8.5 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:433619-434052 Augustus predicted protein sequence Tomato scaffold651_contigs=13~433619-434052 ATHILA PF03078.10 g40618.t1 - 1.9E-009 36.6 0.2 2.2E-009 36.4 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:17762-18169 Augustus predicted protein sequence Tomato scaffold1304_contigs=4~17762-18169 SSPI PF14098.1 g1490.t1 - 0.095 12.6 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Small, acid-soluble spore protein I | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:31285-32998 Augustus predicted protein sequence Tomato scaffold204_contigs=2~31285-32998 RNase_H2-Ydr279 PF09468.5 g18964.t1 - 0.0023 17.1 12 0.0023 17.1 8.3 2.5 2 0 0 2 2 2 1 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:6667-8706 Augustus predicted protein sequence Tomato scaffold740_contigs=1~6667-8706 PLDc_N PF13396.1 g46220.t1 - 0.12 12 0.8 1.6 8.4 0 2.5 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:561779-562730 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~561779-562730 Fer2_4 PF13510.1 g28125.t1 - 0.035 13.9 0.7 0.071 12.9 0.1 1.8 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:41075-43194 Augustus predicted protein sequence Tomato scaffold992_contigs=3~41075-43194 DUF3787 PF12655.2 g48700.t1 - 1.4 8.6 4.6 1.1 9 0.2 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3787) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:795156-796098 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~795156-796098 zf-BED PF02892.10 g63152.t1 - 0.027 14.2 3.7 0.032 14 1.5 1.9 2 1 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:334928-338515 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~334928-338515 ATG27 PF09451.5 g33000.t1 - 0.13 11.5 0 0.16 11.1 0 1.1 1 0 0 1 1 1 0 Autophagy-related protein 27 | Ref_seq=scaffold1110_contigs=2, transcript_loc=scaffold1110_contigs=2:55982-58983 Augustus predicted protein sequence Tomato scaffold1110_contigs=2~55982-58983 DUF4596 PF15363.1 g16861.t1 - 4.5 7.2 7.3 3 7.8 0.8 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4596) | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:107902-108589 Augustus predicted protein sequence Tomato scaffold685_contigs=4~107902-108589 Toxin_30 PF08117.6 g74451.t1 - 4.3 7.4 16.1 3.5 7.7 2.7 2.5 2 0 0 2 2 2 0 Ptu family | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:99953-100853 Augustus predicted protein sequence Tomato scaffold2543_contigs=34~99953-100853 His_kinase PF06580.8 g69904.t1 - 0.053 13.4 0.1 0.061 13.2 0 1.1 1 0 0 1 1 1 0 Histidine kinase | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:72033-72242 Augustus predicted protein sequence Tomato scaffold2312_contigs=19~72033-72242 Maf PF02545.9 g59912.t1 - 0.11 11.5 0 0.18 10.8 0 1.4 1 0 0 1 1 1 0 Maf-like protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:275367-276040 Augustus predicted protein sequence Tomato scaffold1937_contigs=11~275367-276040 Consortin_C PF15281.1 g44342.t1 - 9.3 5.7 6.6 15 5.1 4.6 1.3 1 0 0 1 1 1 0 Consortin C-terminus | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:137003-137377 Augustus predicted protein sequence Tomato scaffold1426_contigs=9~137003-137377 Trypan_PARP PF05887.6 g46354.t1 - 9.5 6 14.4 11 5.8 10 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:123659-123964 Augustus predicted protein sequence Tomato scaffold1480_contigs=4~123659-123964 Humanin PF15040.1 g48363.t1 - 0.044 13 0.6 0.12 11.6 0.4 1.8 1 0 0 1 1 1 0 Humanin family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:125002-125352 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~125002-125352 DUF1836 PF08876.6 g75459.t1 - 0.055 13.2 0 0.09 12.5 0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1836) | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:46799-49806 Augustus predicted protein sequence Tomato scaffold2597_contigs=14~46799-49806 CENP-F_leu_zip PF10473.4 g83098.t1 - 0.038 13.8 3.5 0.055 13.3 2.5 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:173576-174067 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~173576-174067 RVT_3 PF13456.1 g79341.t1 - 0.00054 19.6 0 0.00097 18.8 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:10700-11330 Augustus predicted protein sequence Tomato scaffold2693_contigs=8~10700-11330 DUF1411 PF07199.6 g64501.t1 - 0.11 11.9 0 0.17 11.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:127439-132813 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~127439-132813 TGF_beta_GS PF08515.7 g87308.t1 - 0.41 10 3.6 0.96 8.8 2.5 1.6 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold2997_contigs=1, transcript_loc=scaffold2997_contigs=1:1-187 Augustus predicted protein sequence Tomato scaffold2997_contigs=1~1-187 zf-CCHC PF00098.18 g34680.t1 - 0.27 11.2 7.6 0.43 10.6 5.3 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1154_contigs=1, transcript_loc=scaffold1154_contigs=1:9737-10412 Augustus predicted protein sequence Tomato scaffold1154_contigs=1~9737-10412 Caa3_CtaG PF09678.5 g9632.t1 - 0.058 12.3 0.5 0.093 11.6 0.4 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:290189-291409 Augustus predicted protein sequence Tomato scaffold462_contigs=7~290189-291409 DUF3114 PF11311.3 g37134.t1 - 0.16 11.2 0.1 0.21 10.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3114) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:420142-420495 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~420142-420495 Med30 PF11315.3 g37566.t1 - 0.19 11.8 1.2 10 6.2 0.3 2.8 2 1 0 3 3 3 0 Mediator complex subunit 30 | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:208278-208862 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~208278-208862 DUF2712 PF10916.3 g70340.t1 - 0.053 13.4 0 0.064 13.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2712) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:581535-581912 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~581535-581912 DivIVA PF05103.8 g73366.t1 - 4.7 7.2 15.8 12 5.9 11 1.7 1 1 0 1 1 1 0 DivIVA protein | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:322139-322501 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~322139-322501 FYDLN_acid PF09538.5 g83975.t1 - 0.036 14.6 13.3 0.042 14.4 9.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:8946-9260 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~8946-9260 HTH_33 PF13592.1 g73883.t1 - 0.089 12.3 0.2 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:99854-101230 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~99854-101230 RAI1 PF08652.6 g65874.t1 - 0.028 14.2 5.9 2.1 8.2 0 3 2 1 0 2 2 2 0 RAI1 like PD-(D/E)XK nuclease | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:7172-8246 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~7172-8246 Mto2_bdg PF12808.2 g49798.t1 - 0.025 14.7 0.5 0.037 14.1 0.3 1.4 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:262911-263144 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~262911-263144 PRCC PF10253.4 g63174.t1 - 0.094 13.4 0.1 0.17 12.5 0 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:449479-451266 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~449479-451266 DUF4610 PF15384.1 g12856.t1 - 0.09 12.2 1.4 0.17 11.4 1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4610) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:114234-115730 Augustus predicted protein sequence Tomato scaffold561_contigs=10~114234-115730 ATHILA PF03078.10 g332.t1 - 0.000000072 31.4 0 0.000000082 31.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:18497-18775 Augustus predicted protein sequence Tomato scaffold18_contigs=2~18497-18775 DUF3643 PF12356.3 g29453.t1 - 0.0052 16.1 0.2 0.011 15 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3643) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:324072-325277 Augustus predicted protein sequence Tomato scaffold1022_contigs=14~324072-325277 NADHdh_A3 PF14987.1 g56016.t1 - 7.4 6.5 10 13 5.8 0.8 2.6 2 0 0 2 2 2 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:325702-330433 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~325702-330433 DOR PF14839.1 g21381.t1 - 0.56 9.9 11.1 0.17 11.6 4.4 2.3 2 0 0 2 2 2 0 DOR family | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:66697-67870 Augustus predicted protein sequence Tomato scaffold798_contigs=6~66697-67870 Toxin_39 PF15500.1 g40486.t1 - 0.13 12.4 0 0.16 12 0 1.3 1 0 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:74976-75610 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~74976-75610 Dishevelled PF02377.10 g40038.t1 - 0.12 12.6 0.1 23 5.2 0 2.3 2 0 0 2 2 2 0 Dishevelled specific domain | Ref_seq=scaffold1289_contigs=4, transcript_loc=scaffold1289_contigs=4:27913-28932 Augustus predicted protein sequence Tomato scaffold1289_contigs=4~27913-28932 IncA PF04156.9 g14842.t1 - 0.046 13.3 4.6 0.051 13.1 3.2 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:72193-73031 Augustus predicted protein sequence Tomato scaffold607_contigs=8~72193-73031 ATHILA PF03078.10 g75626.t1 - 0.0014 17.2 0 0.0018 16.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:130977-131606 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~130977-131606 DUF3222 PF11519.3 g40084.t1 - 0.27 11.2 3.1 0.5 10.3 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3222) | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:65673-66427 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~65673-66427 Pec_lyase_C PF00544.14 g42096.t1 - 0.00013 21.5 1.3 2.5 7.5 0 3.1 3 0 0 3 3 3 3 Pectate lyase | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:468797-470762 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~468797-470762 BEX PF04538.7 g81369.t1 - 3.2 8 7.3 0.25 11.5 1.1 2 2 1 0 2 2 2 0 Brain expressed X-linked like family | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:75074-76773 Augustus predicted protein sequence Tomato scaffold2727_contigs=1~75074-76773 DUF3124 PF11322.3 g58891.t1 - 0.1 12.5 0 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3124) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:132031-132357 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~132031-132357 CrtC PF07143.6 g82171.t1 - 0.1 11.8 0.1 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Hydroxyneurosporene synthase (CrtC) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:575163-576197 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~575163-576197 FH2 PF02181.18 g68951.t1 - 0.012 14.5 0 0.013 14.3 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:172129-172455 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~172129-172455 Mei5 PF10376.4 g6936.t1 - 0.006 16.1 0.1 0.01 15.3 0.1 1.3 1 0 0 1 1 1 1 Double-strand recombination repair protein | Ref_seq=scaffold385_contigs=8, transcript_loc=scaffold385_contigs=8:40439-44336 Augustus predicted protein sequence Tomato scaffold385_contigs=8~40439-44336 DBD_Tnp_Mut PF03108.10 g40609.t1 - 0.015 14.8 0 0.021 14.3 0 1.2 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:247770-249727 Augustus predicted protein sequence Tomato scaffold1303_contigs=5~247770-249727 DUF572 PF04502.8 g55354.t1 - 1.5 7.9 4.8 1.5 7.9 3.3 1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:71970-72293 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~71970-72293 UPF0220 PF05255.6 g63849.t1 - 0.035 13.3 0.8 0.045 12.9 0.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:6921-7259 Augustus predicted protein sequence Tomato scaffold2045_contigs=9~6921-7259 CBS PF00571.23 g80966.t1 - 0.074 12.8 0.3 2 8.2 0 2.7 1 1 1 2 2 2 0 CBS domain | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:40993-41538 Augustus predicted protein sequence Tomato scaffold2720_contigs=16~40993-41538 NAM-associated PF14303.1 g40763.t1 - 0.0032 17.8 1.2 0.0033 17.7 0.8 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:68497-69482 Augustus predicted protein sequence Tomato scaffold1310_contigs=21~68497-69482 UBN2 PF14223.1 g9551.t1 - 0.0062 16.3 0 0.009 15.7 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:143015-143793 Augustus predicted protein sequence Tomato scaffold461_contigs=4~143015-143793 Trypan_PARP PF05887.6 g49857.t1 - 0.33 10.7 8.8 0.35 10.6 6.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:446324-446545 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~446324-446545 SARA PF11409.3 g85592.t1 - 0.061 13.2 1.5 0.1 12.5 1 1.4 1 0 0 1 1 1 0 Smad anchor for receptor activation (SARA) | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:53417-54279 Augustus predicted protein sequence Tomato scaffold2810_contigs=1~53417-54279 FoP_duplication PF13865.1 g7755.t1 - 1.8 9 6 2.5 8.6 4.2 1.2 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:224052-224438 Augustus predicted protein sequence Tomato scaffold406_contigs=8~224052-224438 Gliadin PF13016.1 g67300.t1 - 0.0024 18 0.1 0.0034 17.5 0 1.4 1 1 0 1 1 1 1 Cys-rich Gliadin N-terminal | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:105814-106208 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~105814-106208 KAR9 PF08580.5 g10590.t1 - 0.39 8.9 3.4 0.39 8.9 2.4 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:45772-47034 Augustus predicted protein sequence Tomato scaffold501_contigs=2~45772-47034 DUF1237 PF06824.6 g40964.t1 - 0.14 10.7 0 0.16 10.5 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1237) | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:36496-37297 Augustus predicted protein sequence Tomato scaffold1317_contigs=17~36496-37297 UBN2 PF14223.1 g48653.t1 - 0.00000076 28.9 0.1 0.0046 16.7 0 2.1 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:632574-632981 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~632574-632981 Hjc PF01870.13 g70711.t1 - 0.075 12.6 0 0.13 11.9 0 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:75810-77818 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~75810-77818 Herpes_UL52 PF03121.10 g56469.t1 - 0.0036 17 1 2.4 7.9 0 2.9 1 1 2 3 3 3 3 Herpesviridae UL52/UL70 DNA primase | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:32296-33577 Augustus predicted protein sequence Tomato scaffold1809_contigs=8~32296-33577 HDAC4_Gln PF12203.3 g16944.t1 - 3.5 7.6 9.1 0.56 10.1 2.6 2 2 0 0 2 2 2 0 Glutamine rich N terminal domain of histone deacetylase 4 | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:160383-161675 Augustus predicted protein sequence Tomato scaffold687_contigs=8~160383-161675 DUF2369 PF10179.4 g41575.t1 - 0.12 11.4 0 0.15 11.1 0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2369) | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:228439-228966 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~228439-228966 Med25_SD1 PF11235.3 g6830.t1 - 0.054 13.7 3 0.063 13.5 2.1 1.1 1 0 0 1 1 1 0 Mediator complex subunit 25 synapsin 1 | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:117537-117791 Augustus predicted protein sequence Tomato scaffold383_contigs=3~117537-117791 ATHILA PF03078.10 g86276.t1 - 0.024 13.2 0 0.11 11 0 2 1 1 1 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:17502-18440 Augustus predicted protein sequence Tomato scaffold2848_contigs=1~17502-18440 DUF4586 PF15239.1 g28875.t1 - 0.015 14.8 0.7 0.018 14.6 0.5 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4586) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:614682-615144 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~614682-615144 VLPT PF07122.6 g73447.t1 - 0.016 14.8 5.8 0.18 11.5 0 3.4 4 0 0 4 4 4 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold2458_contigs=3, transcript_loc=scaffold2458_contigs=3:30110-30553 Augustus predicted protein sequence Tomato scaffold2458_contigs=3~30110-30553 Gp5_C PF06715.7 g80060.t1 - 0.14 12.1 0.4 0.22 11.4 0.3 1.3 1 0 0 1 1 1 0 Gp5 C-terminal repeat (3 copies) | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:100403-100700 Augustus predicted protein sequence Tomato scaffold2706_contigs=4~100403-100700 RVT_3 PF13456.1 g44559.t1 - 0.000000017 34 0 0.000000036 33 0 1.5 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:187735-189966 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~187735-189966 FxsA PF04186.8 g33023.t1 - 0.052 13.1 1 7.1 6.2 0 2.1 2 0 0 2 2 2 0 FxsA cytoplasmic membrane protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:44556-44858 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~44556-44858 DUF2884 PF11101.3 g72528.t1 - 0.063 12.6 0.1 0.094 12 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:69397-70343 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~69397-70343 Dynamin_M PF01031.15 g66483.t1 - 0.12 11.1 0 0.15 10.8 0 1.1 1 0 0 1 1 1 0 Dynamin central region | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:310952-311251 Augustus predicted protein sequence Tomato scaffold2162_contigs=10~310952-311251 Corona_S2 PF01601.11 g15509.t1 - 0.032 12.3 0.1 0.04 12 0.1 1.2 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:17477-18258 Augustus predicted protein sequence Tomato scaffold631_contigs=3~17477-18258 Bys1 PF04681.7 g57705.t1 - 0.02 14.6 0.2 0.023 14.4 0.1 1.1 1 0 0 1 1 1 0 Blastomyces yeast-phase-specific protein | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:349937-350203 Augustus predicted protein sequence Tomato scaffold1835_contigs=10~349937-350203 MtrB PF05440.7 g10589.t1 - 0.092 12.7 0.4 0.13 12.2 0 1.4 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:44084-44506 Augustus predicted protein sequence Tomato scaffold501_contigs=2~44084-44506 PBP1_TM PF14812.1 g58232.t1 - 2.6 8.3 6.3 4.2 7.7 4.4 1.3 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:487803-490455 Augustus predicted protein sequence Tomato scaffold1848_contigs=19~487803-490455 DegS PF05384.6 g665.t1 - 0.00057 19.1 1 0.00057 19.1 0.7 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:27385-27677 Augustus predicted protein sequence Tomato scaffold95_contigs=9~27385-27677 DUF2893 PF11459.3 g67303.t1 - 0.04 13.7 0.6 0.14 11.9 0.4 1.9 1 1 0 1 1 1 0 Protein of unknwon function (DUF2893) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:108956-109540 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~108956-109540 TnpB_IS66 PF05717.8 g55374.t1 - 0.0018 17.7 0 0.0021 17.4 0 1.1 1 0 0 1 1 1 1 IS66 Orf2 like protein | Ref_seq=scaffold1742_contigs=1, transcript_loc=scaffold1742_contigs=1:10241-10450 Augustus predicted protein sequence Tomato scaffold1742_contigs=1~10241-10450 Radial_spoke_3 PF06098.6 g24157.t1 - 0.16 10.9 3.5 0.32 9.9 2.4 1.4 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:388643-392263 Augustus predicted protein sequence Tomato scaffold876_contigs=13~388643-392263 Pox_I1 PF03289.8 g72545.t1 - 0.016 14 0 0.026 13.3 0 1.2 1 0 0 1 1 1 0 Poxvirus protein I1 | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:126200-131770 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~126200-131770 DUF972 PF06156.8 g38728.t1 - 0.12 12.6 0.8 0.26 11.6 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:162438-166016 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~162438-166016 UTP15_C PF09384.5 g37973.t1 - 0.03 14 0.1 0.04 13.6 0 1.1 1 0 0 1 1 1 0 UTP15 C terminal | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:390009-390350 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~390009-390350 NAD_binding_7 PF13241.1 g64179.t1 - 0.21 11.8 1.3 0.31 11.3 0.9 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:363883-366110 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~363883-366110 VGCC_beta4Aa_N PF12052.3 g69291.t1 - 0.11 12.3 0.4 0.23 11.3 0.3 1.7 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:105376-107165 Augustus predicted protein sequence Tomato scaffold2268_contigs=6~105376-107165 UPF0547 PF10571.4 g48571.t1 - 0.073 12.7 1.8 0.25 11 1.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:340214-341321 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~340214-341321 DUF1686 PF07937.6 g68850.t1 - 0.028 14 0.7 0.032 13.8 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1686) | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:175245-175547 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~175245-175547 DUF4201 PF13870.1 g65187.t1 - 0.011 15.2 0.8 0.018 14.5 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:228639-231480 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~228639-231480 MHCassoc_trimer PF08831.5 g21688.t1 - 0.17 11.7 4 0.15 11.9 1.4 1.9 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:185851-186207 Augustus predicted protein sequence Tomato scaffold810_contigs=11~185851-186207 DUF4600 PF15372.1 g49136.t1 - 0.034 14.3 1.3 0.041 14 0.9 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:132816-133037 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~132816-133037 Phage_integrase PF00589.17 g87609.t1 - 0.044 13.4 0 0.046 13.3 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:1112-1462 Augustus predicted protein sequence Tomato scaffold3413_contigs=1~1112-1462 Med19 PF10278.4 g55479.t1 - 0.017 14.7 7.7 0.022 14.4 5.3 1.1 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:357116-357412 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~357116-357412 Tfb2 PF03849.9 g54492.t1 - 0.041 12.5 0.1 0.047 12.3 0.1 1.1 1 0 0 1 1 1 0 Transcription factor Tfb2 | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:23662-24279 Augustus predicted protein sequence Tomato scaffold1722_contigs=6~23662-24279 zf-CCHC PF00098.18 g70480.t1 - 0.00012 21.8 0.7 0.00023 20.9 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:10782-11960 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~10782-11960 PRP21_like_P PF12230.3 g84266.t1 - 0.12 11.8 1.4 0.16 11.4 1 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein | Ref_seq=scaffold2766_contigs=1, transcript_loc=scaffold2766_contigs=1:73153-73687 Augustus predicted protein sequence Tomato scaffold2766_contigs=1~73153-73687 Transglut_i_TM PF14400.1 g28835.t1 - 0.032 13.7 0.4 0.049 13.1 0.1 1.4 2 0 0 2 2 2 0 Inactive transglutaminase fused to 7 transmembrane helices | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:488764-489198 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~488764-489198 Toxin_60 PF15607.1 g2521.t1 - 0.064 13.2 0.1 0.098 12.6 0.1 1.3 1 0 0 1 1 1 0 Putative toxin 60 | Ref_seq=scaffold242_contigs=15, transcript_loc=scaffold242_contigs=15:30136-33641 Augustus predicted protein sequence Tomato scaffold242_contigs=15~30136-33641 DUF2420 PF10336.4 g8431.t1 - 0.01 15.3 0 0.015 14.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:197926-198177 Augustus predicted protein sequence Tomato scaffold426_contigs=7~197926-198177 Imm35 PF15581.1 g45296.t1 - 0.065 13.2 1 0.14 12.1 0.7 1.5 1 0 0 1 1 1 0 Immunity protein 35 | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:688462-691344 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~688462-691344 zf-CCHC PF00098.18 g87505.t1 - 0.00004 23.3 1.2 0.00004 23.3 0.8 2.1 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold3194_contigs=1, transcript_loc=scaffold3194_contigs=1:335-697 Augustus predicted protein sequence Tomato scaffold3194_contigs=1~335-697 Glycohydro_20b2 PF14845.1 g38447.t1 - 0.089 13.4 0.7 0.1 13.2 0.5 1.1 1 0 0 1 1 1 0 beta-acetyl hexosaminidase like | Ref_seq=scaffold1245_contigs=4, transcript_loc=scaffold1245_contigs=4:28500-29154 Augustus predicted protein sequence Tomato scaffold1245_contigs=4~28500-29154 Sipho_Gp157 PF05565.6 g51403.t1 - 0.007 15.9 0 0.008 15.7 0 1 1 0 0 1 1 1 1 Siphovirus Gp157 | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:210769-210990 Augustus predicted protein sequence Tomato scaffold1613_contigs=9~210769-210990 Cation_efflux PF01545.16 g26388.t1 - 0.06 12.4 0 0.069 12.2 0 1.1 1 0 0 1 1 1 0 Cation efflux family | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:338991-339329 Augustus predicted protein sequence Tomato scaffold948_contigs=6~338991-339329 DUF4283 PF14111.1 g26284.t1 - 0.0000025 26.6 0 0.0000041 25.9 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:30812-31974 Augustus predicted protein sequence Tomato scaffold947_contigs=9~30812-31974 GTPase_binding PF09027.5 g36345.t1 - 0.076 12.6 0 0.1 12.1 0 1.3 1 0 0 1 1 1 0 GTPase binding | Ref_seq=scaffold1192_contigs=4, transcript_loc=scaffold1192_contigs=4:97220-97489 Augustus predicted protein sequence Tomato scaffold1192_contigs=4~97220-97489 DUF3725 PF12523.3 g87619.t1 - 0.0013 18.7 0 0.22 11.6 0 2.6 2 1 1 3 3 3 2 Protein of unknown function (DUF3725) | Ref_seq=scaffold3438_contigs=1, transcript_loc=scaffold3438_contigs=1:1-2759 Augustus predicted protein sequence Tomato scaffold3438_contigs=1~1-2759 7tm_4 PF13853.1 g12010.t1 - 0.11 12.2 0.6 0.11 12.2 0.4 1.9 2 0 0 2 2 2 0 Olfactory receptor | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:90500-91111 Augustus predicted protein sequence Tomato scaffold535_contigs=8~90500-91111 Imm44 PF15584.1 g75557.t1 - 0.0011 18.7 0.1 1.4 8.8 0 2.1 2 0 0 2 2 2 2 Immunity protein 44 | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:36536-37014 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~36536-37014 ATHILA PF03078.10 g54178.t1 - 0.0015 17.2 0 0.0015 17.2 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:197971-198216 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~197971-198216 DUF1049 PF06305.6 g68911.t1 - 0.31 10.5 1.8 2.5 7.6 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:77930-78421 Augustus predicted protein sequence Tomato scaffold2236_contigs=15~77930-78421 EGL-1 PF11430.3 g86243.t1 - 0.52 9.9 2.5 1.1 8.9 1.8 1.4 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:54618-55743 Augustus predicted protein sequence Tomato scaffold2845_contigs=1~54618-55743 LCE PF14672.1 g11533.t1 - 0.52 10.8 5.6 10 6.7 1.3 2.5 2 0 0 2 2 2 0 Late cornified envelope | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:323494-325133 Augustus predicted protein sequence Tomato scaffold525_contigs=12~323494-325133 EBP PF05241.7 g41654.t1 - 0.22 10.5 1.4 0.9 8.5 0 2 2 0 0 2 2 2 0 Emopamil binding protein | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:79118-80046 Augustus predicted protein sequence Tomato scaffold1340_contigs=7~79118-80046 ATHILA PF03078.10 g10787.t1 - 4.7E-009 35.3 0.2 0.000000082 31.2 0 2.3 2 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:71020-71868 Augustus predicted protein sequence Tomato scaffold507_contigs=4~71020-71868 DUF3245 PF11595.3 g40181.t1 - 0.003 17.8 1.9 0.004 17.4 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:28252-28755 Augustus predicted protein sequence Tomato scaffold1293_contigs=3~28252-28755 DUF3954 PF13128.1 g4824.t1 - 0.023 14.1 0 0.039 13.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3954) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:157261-157911 Augustus predicted protein sequence Tomato scaffold308_contigs=4~157261-157911 PsbP PF01789.11 g46904.t1 - 0.086 12.2 0 0.19 11.1 0 1.5 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:617530-618636 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~617530-618636 MIB_HERC2 PF06701.8 g47554.t1 - 0.1 12.5 0.5 0.33 10.9 0.3 1.8 1 1 0 1 1 1 0 Mib_herc2 | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:504275-505159 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~504275-505159 Cadherin_C PF01049.12 g63207.t1 - 0.049 13.6 0.3 0.078 13 0.2 1.3 1 1 0 1 1 1 0 Cadherin cytoplasmic region | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:16958-20597 Augustus predicted protein sequence Tomato scaffold2032_contigs=5~16958-20597 zf-CCHC PF00098.18 g17810.t1 - 0.13 12.1 5.1 0.32 10.9 3.5 1.7 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:26562-28273 Augustus predicted protein sequence Tomato scaffold715_contigs=2~26562-28273 UBN2 PF14223.1 g82916.t1 - 0.00022 21 0.2 0.001 18.8 0 2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:302450-302959 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~302450-302959 REV PF00424.13 g43034.t1 - 0.076 12.9 0.2 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:174102-176635 Augustus predicted protein sequence Tomato scaffold1380_contigs=8~174102-176635 DUF2146 PF10220.4 g20907.t1 - 0.0024 15.9 0.6 0.0031 15.5 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2146) | Ref_seq=scaffold783_contigs=5, transcript_loc=scaffold783_contigs=5:78364-78987 Augustus predicted protein sequence Tomato scaffold783_contigs=5~78364-78987 FTZ PF03867.9 g42829.t1 - 0.022 14 0.2 0.029 13.6 0.2 1.1 1 0 0 1 1 1 0 Fushi tarazu (FTZ), N-terminal region | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:187688-188362 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~187688-188362 FlaC_arch PF05377.6 g26857.t1 - 0.088 12.7 1.2 0.31 10.9 0.3 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:218251-218712 Augustus predicted protein sequence Tomato scaffold961_contigs=8~218251-218712 Spc7_C2 PF15577.1 g7362.t1 - 0.1 12.2 0.5 0.24 11.1 0 1.8 3 0 0 3 3 3 0 Spc7_C2 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:11448-12552 Augustus predicted protein sequence Tomato scaffold395_contigs=7~11448-12552 CENP-O PF09496.5 g7500.t1 - 0.0015 18.7 0.6 0.0028 17.8 0.2 1.6 1 1 1 2 2 2 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:59579-60025 Augustus predicted protein sequence Tomato scaffold403_contigs=6~59579-60025 DNA_pol3_gamma3 PF12169.3 g9304.t1 - 0.026 14.2 0.1 0.031 14 0.1 1 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:351738-352025 Augustus predicted protein sequence Tomato scaffold451_contigs=13~351738-352025 IBV_3A PF03617.8 g6680.t1 - 0.023 14.4 1.2 0.042 13.5 0.8 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:256323-257929 Augustus predicted protein sequence Tomato scaffold380_contigs=11~256323-257929 Glyco_trans_1_4 PF13692.1 g23385.t1 - 0.03 14.4 0.1 0.054 13.6 0.1 1.5 1 1 0 1 1 1 0 Glycosyl transferases group 1 | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:49793-50050 Augustus predicted protein sequence Tomato scaffold859_contigs=6~49793-50050 4HB_MCP_1 PF12729.2 g2118.t1 - 0.1 11.9 0.8 0.15 11.4 0.5 1.2 1 1 0 1 1 1 0 Four helix bundle sensory module for signal transduction | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:103982-107737 Augustus predicted protein sequence Tomato scaffold227_contigs=2~103982-107737 Tash_PEST PF07708.6 g1487.t1 - 0.013 15.3 0 0.013 15.3 0 1.6 2 0 0 2 2 2 0 Tash protein PEST motif | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:21208-27043 Augustus predicted protein sequence Tomato scaffold204_contigs=2~21208-27043 FXR1P_C PF12235.3 g44846.t1 - 0.22 11.6 8.8 0.29 11.2 6.1 1.2 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:226366-226641 Augustus predicted protein sequence Tomato scaffold1440_contigs=6~226366-226641 Cytadhesin_P30 PF07271.6 g55538.t1 - 0.0031 16.8 6 0.0035 16.6 4.2 1.1 1 0 0 1 1 1 1 Cytadhesin P30/P32 | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:11588-11947 Augustus predicted protein sequence Tomato scaffold1745_contigs=6~11588-11947 DBD_Tnp_Mut PF03108.10 g85899.t1 - 0.00047 19.6 0.2 0.00058 19.3 0.1 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:20450-20740 Augustus predicted protein sequence Tomato scaffold2827_contigs=1~20450-20740 Myc_N PF01056.13 g69053.t1 - 0.043 12.9 2 0.046 12.8 1.4 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2246_contigs=8, transcript_loc=scaffold2246_contigs=8:122176-122583 Augustus predicted protein sequence Tomato scaffold2246_contigs=8~122176-122583 IP_trans PF02121.13 g59735.t1 - 0.033 13.3 0.5 0.049 12.7 0.3 1.3 1 0 0 1 1 1 0 Phosphatidylinositol transfer protein | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:143714-144172 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~143714-144172 GP11 PF08677.5 g50262.t1 - 0.088 11.9 0 0.1 11.7 0 1.2 1 0 0 1 1 1 0 GP11 baseplate wedge protein | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:63166-63525 Augustus predicted protein sequence Tomato scaffold1562_contigs=2~63166-63525 DUF605 PF04652.11 g75177.t1 - 3.8 6.8 13.2 4.5 6.5 9.2 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:601910-602914 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~601910-602914 PepSY_TM_2 PF13703.1 g27704.t1 - 0.044 13.9 1.9 0.065 13.4 1.3 1.2 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:388274-388561 Augustus predicted protein sequence Tomato scaffold983_contigs=13~388274-388561 DUF1693 PF07984.7 g49337.t1 - 0.13 11.4 0.2 0.18 10.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1693) | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:91986-92893 Augustus predicted protein sequence Tomato scaffold1535_contigs=9~91986-92893 Seryl_tRNA_N PF02403.17 g51215.t1 - 0.0095 15.9 1.8 0.014 15.3 1.2 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:20123-21171 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~20123-21171 DUF1202 PF06717.6 g40107.t1 - 0.012 14.8 0.1 0.02 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1202) | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:149206-150335 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~149206-150335 UBN2_3 PF14244.1 g82157.t1 - 0.074 12.6 0 0.11 12 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:524866-525165 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~524866-525165 YbaB_DNA_bd PF02575.11 g909.t1 - 0.02 14.7 0.5 0.024 14.5 0.4 1.1 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:48810-49037 Augustus predicted protein sequence Tomato scaffold180_contigs=3~48810-49037 YvbH_ext PF11724.3 g22076.t1 - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 YvbH-like oligomerisation region | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:3047-5856 Augustus predicted protein sequence Tomato scaffold818_contigs=2~3047-5856 Pex14_N PF04695.8 g5897.t1 - 0.29 11.1 1.3 0.31 11 0.9 1.1 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:74873-75106 Augustus predicted protein sequence Tomato scaffold344_contigs=14~74873-75106 Stathmin PF00836.14 g18764.t1 - 0.023 14.3 1.7 0.029 14 1 1.3 1 1 0 1 1 1 0 Stathmin family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:384859-385098 Augustus predicted protein sequence Tomato scaffold731_contigs=13~384859-385098 DUF2694 PF10904.3 g87456.t1 - 0.075 13 0.9 0.095 12.7 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold3100_contigs=1, transcript_loc=scaffold3100_contigs=1:3735-4382 Augustus predicted protein sequence Tomato scaffold3100_contigs=1~3735-4382 Retrotrans_gag PF03732.12 g44184.t1 - 0.057 13.4 0 0.1 12.6 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:37174-38240 Augustus predicted protein sequence Tomato scaffold1415_contigs=17~37174-38240 zf-CCHC PF00098.18 g9919.t1 - 0.000097 22.1 0.7 0.00019 21.2 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:179228-180247 Augustus predicted protein sequence Tomato scaffold478_contigs=9~179228-180247 DUF722 PF05263.6 g79636.t1 - 0.0014 18.7 0.4 0.99 9.5 0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF722) | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:374539-378383 Augustus predicted protein sequence Tomato scaffold2699_contigs=36~374539-378383 TipAS PF07739.8 g85716.t1 - 0.067 13.5 1.6 0.23 11.7 0.7 1.9 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:55454-56076 Augustus predicted protein sequence Tomato scaffold2815_contigs=1~55454-56076 UBN2_3 PF14244.1 g9528.t1 - 0.011 15.2 0.2 0.02 14.4 0.2 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:11573-13218 Augustus predicted protein sequence Tomato scaffold461_contigs=4~11573-13218 DUF1160 PF06648.6 g24671.t1 - 0.059 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:68114-68592 Augustus predicted protein sequence Tomato scaffold893_contigs=2~68114-68592 Tropomyosin_1 PF12718.2 g44709.t1 - 0.021 14.6 0.7 0.025 14.4 0.5 1.2 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:85501-85887 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~85501-85887 RRN9 PF10680.4 g18685.t1 - 0.081 12.6 3.8 0.15 11.8 1.1 2.3 2 0 0 2 2 2 0 RNA polymerase I specific transcription initiation factor | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:176006-177463 Augustus predicted protein sequence Tomato scaffold731_contigs=13~176006-177463 DUF1985 PF09331.6 g2606.t1 - 1.2E-009 38.1 0 1.2E-009 38.1 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:72381-72755 Augustus predicted protein sequence Tomato scaffold247_contigs=8~72381-72755 Tho2 PF11262.3 g71459.t1 - 0.045 12.8 0.1 0.057 12.4 0.1 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1259100-1259546 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~1259100-1259546 DBINO PF13892.1 g83351.t1 - 0.00027 20.9 4.6 0.00032 20.7 3.2 1.1 1 0 0 1 1 1 1 DNA-binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:176841-177236 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~176841-177236 CCDC155 PF14662.1 g34108.t1 - 0.000022 24.1 4.5 0.000032 23.6 3.1 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:60156-61885 Augustus predicted protein sequence Tomato scaffold1142_contigs=5~60156-61885 FH2 PF02181.18 g63761.t1 - 0.077 11.8 0 0.14 11 0 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:88606-89373 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~88606-89373 MRP-L20 PF12824.2 g45175.t1 - 0.012 15.6 1.6 0.012 15.6 1.1 3.3 3 1 1 4 4 4 0 Mitochondrial ribosomal protein subunit L20 | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:249121-250880 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~249121-250880 RNA_pol_Rpc34 PF05158.7 g8526.t1 - 0.0035 16.5 0.5 0.0038 16.4 0.3 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:139278-139601 Augustus predicted protein sequence Tomato scaffold428_contigs=8~139278-139601 HALZ PF02183.13 g1162.t1 - 0.019 14.6 10 0.81 9.4 2.3 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:27984-28547 Augustus predicted protein sequence Tomato scaffold193_contigs=2~27984-28547 Spt5_N PF11942.3 g29610.t1 - 0.26 11.9 11.5 0.088 13.4 4.7 2.2 2 0 0 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:249930-254746 Augustus predicted protein sequence Tomato scaffold1030_contigs=11~249930-254746 DUF3251 PF11622.3 g58863.t1 - 0.074 12.4 0.4 0.65 9.3 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:3147-3521 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~3147-3521 DUF1091 PF06477.8 g28648.t1 - 0.053 13.9 0.1 0.16 12.4 0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:46206-47052 Augustus predicted protein sequence Tomato scaffold1008_contigs=4~46206-47052 Phage_connect_1 PF05135.8 g80069.t1 - 0.2 11.8 0.9 13 6 0.1 2.2 1 1 0 2 2 2 0 Phage gp6-like head-tail connector protein | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:133310-133735 Augustus predicted protein sequence Tomato scaffold2706_contigs=4~133310-133735 SLEI_Leptospira PF07620.6 g10406.t1 - 0.1 12.4 0 0.16 11.7 0 1.3 1 0 0 1 1 1 0 SLEI | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:71346-71630 Augustus predicted protein sequence Tomato scaffold498_contigs=12~71346-71630 DUF2752 PF10825.3 g81109.t1 - 0.37 10.8 6.2 16 5.5 0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2752) | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:200610-201934 Augustus predicted protein sequence Tomato scaffold2722_contigs=6~200610-201934 GLTP PF08718.6 g24682.t1 - 0.054 13.5 0.6 0.07 13.1 0.4 1.1 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:86248-86607 Augustus predicted protein sequence Tomato scaffold893_contigs=2~86248-86607 PMD PF10536.4 g13952.t1 - 1.6E-013 50.4 0.5 9.7E-011 41.2 0 2 1 1 1 2 2 2 2 Plant mobile domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:11136-11781 Augustus predicted protein sequence Tomato scaffold583_contigs=2~11136-11781 BNIP3 PF06553.7 g53779.t1 - 1.7 7.9 5.2 0.67 9.2 0.6 2 2 0 0 2 2 2 0 BNIP3 | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:280852-282135 Augustus predicted protein sequence Tomato scaffold1702_contigs=7~280852-282135 Nucleic_acid_bd PF13820.1 g30480.t1 - 0.074 12.6 0 0.093 12.3 0 1.1 1 0 0 1 1 1 0 Putative nucleic acid-binding region | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:17192-17458 Augustus predicted protein sequence Tomato scaffold1044_contigs=3~17192-17458 Dala_Dala_lig_N PF01820.16 g59496.t1 - 0.53 10.5 3 5.3 7.3 0 2.2 2 0 0 2 2 2 0 D-ala D-ala ligase N-terminus | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:93896-95794 Augustus predicted protein sequence Tomato scaffold1925_contigs=8~93896-95794 DUF4266 PF14086.1 g76282.t1 - 0.14 12.6 1.9 0.43 11.1 1.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4266) | Ref_seq=scaffold2621_contigs=15, transcript_loc=scaffold2621_contigs=15:111768-113070 Augustus predicted protein sequence Tomato scaffold2621_contigs=15~111768-113070 LpxB PF02684.10 g67925.t1 - 0.19 10.3 0 0.27 9.8 0 1.1 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:256342-258784 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~256342-258784 zf-CCHC PF00098.18 g45616.t1 - 0.0064 16.3 0 0.01 15.7 0 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:82119-83441 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~82119-83441 PRESAN PF09687.5 g51131.t1 - 0.014 15.4 0.4 0.018 15.1 0.3 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:300086-300469 Augustus predicted protein sequence Tomato scaffold1606_contigs=13~300086-300469 Med21 PF11221.3 g28978.t1 - 0.016 15.1 1.7 32 4.4 0 3.8 1 1 3 4 4 4 0 Subunit 21 of Mediator complex | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:66777-73631 Augustus predicted protein sequence Tomato scaffold1011_contigs=17~66777-73631 DUF4413 PF14372.1 g34411.t1 - 0.0048 16.8 0.5 0.0057 16.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:3208-3423 Augustus predicted protein sequence Tomato scaffold1150_contigs=3~3208-3423 DUF3122 PF11320.3 g27482.t1 - 0.11 12.3 0 0.14 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:239802-240164 Augustus predicted protein sequence Tomato scaffold980_contigs=13~239802-240164 ELK PF03789.8 g26035.t1 - 0.31 10.9 1.8 5.4 6.9 0.1 2.4 2 0 0 2 2 2 0 ELK domain | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:218461-221351 Augustus predicted protein sequence Tomato scaffold942_contigs=10~218461-221351 DUF3990 PF13151.1 g11454.t1 - 0.0068 15.7 0.4 0.017 14.5 0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3990) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:152373-154287 Augustus predicted protein sequence Tomato scaffold524_contigs=3~152373-154287 THRAP3_BCLAF1 PF15440.1 g2044.t1 - 2.7 6.5 8.2 3.4 6.2 5.7 1 1 0 0 1 1 1 0 THRAP3/BCLAF1 family | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:201996-202828 Augustus predicted protein sequence Tomato scaffold223_contigs=4~201996-202828 GTPase_Cys_C PF12631.2 g36196.t1 - 0.023 15.1 0.1 0.031 14.6 0.1 1.2 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:161477-162842 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~161477-162842 DUF2039 PF10217.4 g547.t1 - 0.13 12.2 4.7 1.1 9.2 3.2 2 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:11045-11332 Augustus predicted protein sequence Tomato scaffold53_contigs=4~11045-11332 Retrotrans_gag PF03732.12 g64739.t1 - 0.013 15.5 0 0.021 14.9 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:95835-96415 Augustus predicted protein sequence Tomato scaffold2090_contigs=6~95835-96415 DUF504 PF04457.7 g2899.t1 - 0.016 15.3 0 0.028 14.5 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF504) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:60208-60546 Augustus predicted protein sequence Tomato scaffold257_contigs=2~60208-60546 DUF4219 PF13961.1 g58357.t1 - 0.0083 15.5 0.2 0.014 14.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:182135-183938 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~182135-183938 ActA PF05058.7 g58783.t1 - 0.048 11.6 0.2 0.05 11.6 0.1 1 1 0 0 1 1 1 0 ActA Protein | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:199221-201706 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~199221-201706 GPW_gp25 PF04965.9 g65997.t1 - 0.059 12.9 0 0.084 12.4 0 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme | Ref_seq=scaffold2146_contigs=11, transcript_loc=scaffold2146_contigs=11:168767-169054 Augustus predicted protein sequence Tomato scaffold2146_contigs=11~168767-169054 DnaJ_CXXCXGXG PF00684.14 g62913.t1 - 0.061 13.3 0.2 13 5.9 0 2.1 2 0 0 2 2 2 0 DnaJ central domain | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:10635-11082 Augustus predicted protein sequence Tomato scaffold2015_contigs=7~10635-11082 DUF1985 PF09331.6 g77765.t1 - 0.000000098 31.9 0 0.00000017 31.1 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:304840-308530 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~304840-308530 RVT_3 PF13456.1 g43070.t1 - 1.3E-013 50.4 0.2 0.000014 24.7 0 2.1 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:28230-28760 Augustus predicted protein sequence Tomato scaffold1381_contigs=7~28230-28760 DUF3534 PF12053.3 g43554.t1 - 0.058 13.2 0.2 0.066 13 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:316769-317062 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~316769-317062 TAP42 PF04177.7 g23055.t1 - 0.038 12.9 0 0.046 12.6 0 1.3 1 0 0 1 1 1 0 TAP42-like family | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:214469-214954 Augustus predicted protein sequence Tomato scaffold846_contigs=10~214469-214954 zf-CCHC PF00098.18 g84544.t1 - 0.00011 21.9 1 0.00022 20.9 0.7 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:16171-17136 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~16171-17136 DUF716 PF04819.7 g78353.t1 - 0.064 12.6 0.9 0.27 10.6 0.3 2 2 0 0 2 2 2 0 Family of unknown function (DUF716) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:290309-293990 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~290309-293990 CENP-F_C_Rb_bdg PF10490.4 g77319.t1 - 0.000021 23.7 0.5 0.19 11 0 2.4 2 0 0 2 2 2 2 Rb-binding domain of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:10993-11680 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~10993-11680 zf-CCHC PF00098.18 g28415.t1 - 0.014 15.3 0.3 0.023 14.6 0.2 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1002_contigs=4, transcript_loc=scaffold1002_contigs=4:52415-52986 Augustus predicted protein sequence Tomato scaffold1002_contigs=4~52415-52986 DUF4330 PF14221.1 g65875.t1 - 0.16 11.8 1 0.28 11 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:11274-12884 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~11274-12884 Takusan PF04822.8 g21875.t1 - 0.55 10 3.2 0.42 10.4 0.2 2 2 0 0 2 2 2 0 Takusan | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:131039-133895 Augustus predicted protein sequence Tomato scaffold817_contigs=11~131039-133895 DBD_Tnp_Mut PF03108.10 g70568.t1 - 0.002 17.6 0 0.0039 16.7 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:384461-384931 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~384461-384931 Vfa1 PF08432.5 g28248.t1 - 0.0031 17.5 3.2 0.0043 17.1 2.2 1.1 1 0 0 1 1 1 1 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:36881-37775 Augustus predicted protein sequence Tomato scaffold994_contigs=5~36881-37775 Upf2 PF04050.9 g5551.t1 - 0.12 12.1 2.1 0.14 11.9 1.5 1.2 1 0 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:82847-83283 Augustus predicted protein sequence Tomato scaffold331_contigs=3~82847-83283 DUF4315 PF14193.1 g74075.t1 - 0.022 14.6 1.3 0.022 14.6 0.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4315) | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:402877-404083 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~402877-404083 DUF1985 PF09331.6 g7973.t1 - 0.000013 25 0 0.000019 24.4 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:84129-87967 Augustus predicted protein sequence Tomato scaffold413_contigs=6~84129-87967 DUF718 PF05336.8 g18698.t1 - 0.1 12.4 0.3 0.12 12.1 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF718) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:211321-213450 Augustus predicted protein sequence Tomato scaffold731_contigs=13~211321-213450 Trehalose_recp PF06151.8 g68840.t1 - 0.025 12.9 1.4 0.035 12.4 1 1.2 1 0 0 1 1 1 0 Trehalose receptor | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:122060-125783 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~122060-125783 RVT_3 PF13456.1 g66148.t1 - 0.0034 17.1 0 0.0042 16.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:108900-109130 Augustus predicted protein sequence Tomato scaffold2152_contigs=6~108900-109130 Nucleoplasmin PF03066.10 g21142.t1 - 0.00046 19.7 0 0.00046 19.7 0 1.2 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:314635-315132 Augustus predicted protein sequence Tomato scaffold793_contigs=9~314635-315132 ZZ PF00569.12 g82455.t1 - 2.4 7.7 8.4 5.2 6.6 0.3 2.6 1 1 1 2 2 2 0 Zinc finger, ZZ type | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:92087-92551 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~92087-92551 DUF4596 PF15363.1 g20272.t1 - 0.041 13.7 6.6 2.1 8.3 0.8 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4596) | Ref_seq=scaffold769_contigs=2, transcript_loc=scaffold769_contigs=2:31722-32192 Augustus predicted protein sequence Tomato scaffold769_contigs=2~31722-32192 NPCC PF08058.6 g5123.t1 - 0.0084 15.9 0 0.015 15.1 0 1.4 1 0 0 1 1 1 1 Nuclear pore complex component | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:430536-431132 Augustus predicted protein sequence Tomato scaffold315_contigs=11~430536-431132 BNIP3 PF06553.7 g2781.t1 - 0.16 11.3 0.7 0.18 11.1 0.5 1.2 1 0 0 1 1 1 0 BNIP3 | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:50410-50712 Augustus predicted protein sequence Tomato scaffold254_contigs=6~50410-50712 CDC45 PF02724.9 g87796.t1 - 0.17 9.9 12.6 0.18 9.8 8.7 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold4152_contigs=1, transcript_loc=scaffold4152_contigs=1:1-838 Augustus predicted protein sequence Tomato scaffold4152_contigs=1~1-838 GTSE1_N PF15259.1 g36002.t1 - 0.023 14.6 0.7 0.033 14.1 0.5 1.3 1 0 0 1 1 1 0 G-2 and S-phase expressed 1 | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:36940-37849 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~36940-37849 CPSase_sm_chain PF00988.17 g22450.t1 - 0.022 14.2 0 0.035 13.6 0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase small chain, CPSase domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:73282-75504 Augustus predicted protein sequence Tomato scaffold830_contigs=3~73282-75504 Elong_Iki1 PF10483.4 g7050.t1 - 0.014 14.7 7.1 0.018 14.4 4.9 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:322618-323208 Augustus predicted protein sequence Tomato scaffold386_contigs=10~322618-323208 DUF1490 PF07371.7 g4080.t1 - 1.4 8.9 9.1 5.5 7 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1490) | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:11718-12560 Augustus predicted protein sequence Tomato scaffold291_contigs=11~11718-12560 Bclx_interact PF08945.5 g64032.t1 - 0.12 11.9 0.4 0.18 11.3 0.3 1.3 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:56167-56828 Augustus predicted protein sequence Tomato scaffold2050_contigs=3~56167-56828 CENP-B_dimeris PF09026.5 g24963.t1 - 0.025 14.7 1.7 0.025 14.7 1.2 1.7 2 0 0 2 2 2 0 Centromere protein B dimerisation domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:93430-95408 Augustus predicted protein sequence Tomato scaffold907_contigs=7~93430-95408 Herpes_US12 PF05363.7 g69112.t1 - 0.082 13.4 0.1 0.1 13.1 0 1.1 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:28246-28467 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~28246-28467 YhzD PF14120.1 g84920.t1 - 0.12 12.2 0.1 0.26 11.1 0.1 1.6 2 0 0 2 2 2 0 YhzD-like protein | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:102715-103241 Augustus predicted protein sequence Tomato scaffold2784_contigs=1~102715-103241 DBD_Tnp_Mut PF03108.10 g17844.t1 - 6.5E-009 35.2 0.6 8.6E-009 34.8 0.4 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:124039-124359 Augustus predicted protein sequence Tomato scaffold715_contigs=2~124039-124359 Vir_act_alpha_C PF10400.4 g27790.t1 - 0.042 14.2 0.2 0.042 14.2 0.1 1.9 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:714125-714523 Augustus predicted protein sequence Tomato scaffold983_contigs=13~714125-714523 Exonuc_X-T_C PF08411.5 g33770.t1 - 0.094 11.7 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Exonuclease C-terminal | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:340539-340952 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~340539-340952 Trehalase PF01204.13 g70840.t1 - 0.43 9.1 2.9 0.51 8.8 2 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:291386-292038 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~291386-292038 DUF4169 PF13770.1 g76443.t1 - 0.12 12.2 0.2 0.16 11.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4169) | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:59975-60292 Augustus predicted protein sequence Tomato scaffold2628_contigs=7~59975-60292 GerPB PF10803.3 g55788.t1 - 0.13 12 0.5 0.23 11.2 0.3 1.4 1 0 0 1 1 1 0 Spore germination GerPB | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:84742-86576 Augustus predicted protein sequence Tomato scaffold1773_contigs=11~84742-86576 DUF2083 PF09856.4 g15989.t1 - 0.0014 18.3 1.3 0.0017 17.9 0.9 1.3 1 1 0 1 1 1 1 Predicted transcriptional regulator (DUF2083) | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:495233-495490 Augustus predicted protein sequence Tomato scaffold651_contigs=13~495233-495490 FAM176 PF14851.1 g66726.t1 - 0.021 14.5 1.3 0.031 13.9 0.9 1.3 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:172046-172577 Augustus predicted protein sequence Tomato scaffold2167_contigs=3~172046-172577 Herpes_UL52 PF03121.10 g47946.t1 - 0.039 13.6 0.3 0.085 12.6 0.2 1.5 1 0 0 1 1 1 0 Herpesviridae UL52/UL70 DNA primase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:146013-146657 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~146013-146657 Muted PF14942.1 g45199.t1 - 0.037 13.9 3.6 0.063 13.1 2.5 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:355400-361449 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~355400-361449 NESP55 PF06390.7 g76774.t1 - 5.2 6.3 10.1 4 6.7 5.7 1.8 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:636661-637445 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~636661-637445 Adeno_E4 PF05385.6 g86568.t1 - 0.57 10.1 3.1 3.8 7.5 0.2 2.2 1 1 1 2 2 2 0 Mastadenovirus early E4 13 kDa protein | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:19932-20414 Augustus predicted protein sequence Tomato scaffold2873_contigs=1~19932-20414 Peptidase_M35 PF02102.10 g36314.t1 - 0.35 9.4 1.6 3 6.3 0.4 2 2 0 0 2 2 2 0 Deuterolysin metalloprotease (M35) family | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:116798-117529 Augustus predicted protein sequence Tomato scaffold1190_contigs=29~116798-117529 P_proprotein PF01483.15 g75040.t1 - 0.12 12.1 0.2 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Proprotein convertase P-domain | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:3961-8247 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~3961-8247 DUF1180 PF06679.7 g50107.t1 - 0.061 13.2 0.1 0.18 11.6 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:244531-245313 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~244531-245313 F-box-like PF12937.2 g15961.t1 - 0.024 14.3 0.2 0.036 13.8 0.2 1.4 1 0 0 1 1 1 0 F-box-like | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:377576-377949 Augustus predicted protein sequence Tomato scaffold651_contigs=13~377576-377949 zf-met PF12874.2 g81147.t1 - 0.00000028 30.4 0.7 0.00000072 29.2 0.5 1.7 1 0 0 1 1 1 1 Zinc-finger of C2H2 type | Ref_seq=scaffold2723_contigs=6, transcript_loc=scaffold2723_contigs=6:128782-129147 Augustus predicted protein sequence Tomato scaffold2723_contigs=6~128782-129147 Rubella_Capsid PF05750.6 g55544.t1 - 0.12 11.7 1.4 0.15 11.4 1 1.2 1 0 0 1 1 1 0 Rubella capsid protein | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:73673-74164 Augustus predicted protein sequence Tomato scaffold1745_contigs=6~73673-74164 MA3 PF02847.12 g59795.t1 - 0.059 13 0 0.07 12.8 0 1.1 1 0 0 1 1 1 0 MA3 domain | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:126779-127054 Augustus predicted protein sequence Tomato scaffold1935_contigs=2~126779-127054 zf-BED PF02892.10 g87525.t1 - 0.0015 18.2 0.7 0.0039 16.9 0.5 1.7 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold3237_contigs=1, transcript_loc=scaffold3237_contigs=1:1-933 Augustus predicted protein sequence Tomato scaffold3237_contigs=1~1-933 Erv26 PF04148.8 g53770.t1 - 0.15 11.3 0.2 0.18 11.1 0.1 1.1 1 0 0 1 1 1 0 Transmembrane adaptor Erv26 | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:261721-263622 Augustus predicted protein sequence Tomato scaffold1702_contigs=7~261721-263622 PDDEXK_2 PF12784.2 g72631.t1 - 0.039 13.1 0.1 0.097 11.8 0 1.5 2 0 0 2 2 2 0 PD-(D/E)XK nuclease family transposase | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:20931-21869 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~20931-21869 Retrotrans_gag PF03732.12 g10889.t1 - 0.038 14 0 0.073 13.1 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:303165-306906 Augustus predicted protein sequence Tomato scaffold508_contigs=9~303165-306906 DUF805 PF05656.9 g69565.t1 - 0.11 12.3 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:143965-144698 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~143965-144698 Hemopexin PF00045.14 g20826.t1 - 0.059 13.1 2 0.42 10.3 1.1 2.1 2 0 0 2 2 2 0 Hemopexin | Ref_seq=scaffold782_contigs=17, transcript_loc=scaffold782_contigs=17:47156-48155 Augustus predicted protein sequence Tomato scaffold782_contigs=17~47156-48155 Paired_CXXCH_1 PF09699.5 g58407.t1 - 0.03 13.8 0.2 0.08 12.4 0.1 1.7 1 0 0 1 1 1 0 Doubled CXXCH motif (Paired_CXXCH_1) | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:69776-72024 Augustus predicted protein sequence Tomato scaffold1861_contigs=7~69776-72024 ATG16 PF08614.6 g30636.t1 - 0.054 13.3 0.3 0.079 12.7 0.2 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:417334-420118 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~417334-420118 Pox_A_type_inc PF04508.7 g9386.t1 - 0.052 13.3 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:127925-128795 Augustus predicted protein sequence Tomato scaffold455_contigs=9~127925-128795 EzrA PF06160.7 g70182.t1 - 0.00064 18 3.1 0.00071 17.8 2.2 1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:11494-11977 Augustus predicted protein sequence Tomato scaffold2332_contigs=1~11494-11977 DUF4576 PF15144.1 g11431.t1 - 0.0049 16.4 0.2 0.65 9.6 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4576) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:55073-62118 Augustus predicted protein sequence Tomato scaffold524_contigs=3~55073-62118 Fis1_TPR_N PF14852.1 g79051.t1 - 0.13 11.5 0 0.17 11.1 0 1.2 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat | Ref_seq=scaffold2683_contigs=2, transcript_loc=scaffold2683_contigs=2:1-249 Augustus predicted protein sequence Tomato scaffold2683_contigs=2~1-249 A2M PF00207.17 g29082.t1 - 0.11 12 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:550508-550987 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~550508-550987 ERGIC_N PF13850.1 g28981.t1 - 0.084 12.8 0.7 0.15 12 0.5 1.5 1 0 0 1 1 1 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:103846-105350 Augustus predicted protein sequence Tomato scaffold1011_contigs=17~103846-105350 DUF3292 PF11696.3 g68757.t1 - 2.6 5.7 5.3 5.2 4.8 3.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3292) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:227041-227642 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~227041-227642 CAP_N PF01213.14 g87910.t1 - 0.21 10.8 2.8 0.33 10.1 2 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold4813_contigs=1, transcript_loc=scaffold4813_contigs=1:43-521 Augustus predicted protein sequence Tomato scaffold4813_contigs=1~43-521 Caveolin PF01146.12 g80378.t1 - 0.018 14.6 1.2 0.024 14.2 0.9 1.2 1 0 0 1 1 1 0 Caveolin | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:134217-134715 Augustus predicted protein sequence Tomato scaffold2711_contigs=30~134217-134715 ATHILA PF03078.10 g43966.t1 - 0.000023 23.2 0 0.000025 23 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:130829-131095 Augustus predicted protein sequence Tomato scaffold1397_contigs=9~130829-131095 Lipase_GDSL_2 PF13472.1 g57271.t1 - 0.012 15.7 0 0.044 13.9 0 1.7 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:11904-13497 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~11904-13497 Xpo1 PF08389.7 g64423.t1 - 0.0012 18.8 0.2 0.36 10.7 0 2.2 2 0 0 2 2 2 2 Exportin 1-like protein | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:55976-57678 Augustus predicted protein sequence Tomato scaffold2062_contigs=33~55976-57678 T_Ag_DNA_bind PF02217.11 g51632.t1 - 0.19 12.1 0.9 0.28 11.6 0.6 1.2 1 0 0 1 1 1 0 Origin of replication binding protein | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:119745-120092 Augustus predicted protein sequence Tomato scaffold1619_contigs=7~119745-120092 DUF2919 PF11143.3 g59766.t1 - 0.031 14 0.3 9.9 5.9 0 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2919) | Ref_seq=scaffold1934_contigs=9, transcript_loc=scaffold1934_contigs=9:13865-18857 Augustus predicted protein sequence Tomato scaffold1934_contigs=9~13865-18857 DUF4219 PF13961.1 g46334.t1 - 0.0018 17.6 0 0.0041 16.5 0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:67502-68744 Augustus predicted protein sequence Tomato scaffold1480_contigs=4~67502-68744 BChl_A PF02327.12 g7293.t1 - 0.12 10.9 0.1 0.13 10.8 0.1 1.1 1 0 0 1 1 1 0 Bacteriochlorophyll A protein | Ref_seq=scaffold392_contigs=4, transcript_loc=scaffold392_contigs=4:26774-27875 Augustus predicted protein sequence Tomato scaffold392_contigs=4~26774-27875 DUF572 PF04502.8 g64185.t1 - 3.4 6.7 23.2 3.9 6.5 16.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:374483-374767 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~374483-374767 Patched PF02460.13 g19568.t1 - 0.054 11.4 0 0.074 10.9 0 1.1 1 0 0 1 1 1 0 Patched family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:58844-63622 Augustus predicted protein sequence Tomato scaffold756_contigs=8~58844-63622 zf-CCHC PF00098.18 g51205.t1 - 0.05 13.5 0.3 0.05 13.5 0.2 3.1 4 0 0 4 4 4 0 Zinc knuckle | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:240228-242715 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~240228-242715 DUF2667 PF10868.3 g43595.t1 - 0.21 11.9 1.7 0.29 11.5 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2667) | Ref_seq=scaffold1388_contigs=6, transcript_loc=scaffold1388_contigs=6:94904-95275 Augustus predicted protein sequence Tomato scaffold1388_contigs=6~94904-95275 ATHILA PF03078.10 g33828.t1 - 0.015 13.9 0 0.017 13.7 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:143732-145678 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~143732-145678 Cwf_Cwc_15 PF04889.7 g81919.t1 - 0.00085 19.1 13.7 0.00097 18.9 9.5 1.2 1 0 0 1 1 1 1 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1448546-1451561 Augustus predicted protein sequence Tomato scaffold2733_contigs=41~1448546-1451561 Asp-B-Hydro_N PF05279.6 g72622.t1 - 0.12 12.1 0.4 0.13 12 0.3 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:269597-269881 Augustus predicted protein sequence Tomato scaffold2408_contigs=11~269597-269881 MIP-T3 PF10243.4 g794.t1 - 0.0069 14.9 1.1 0.0089 14.5 0.8 1.1 1 0 0 1 1 1 1 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold117_contigs=4, transcript_loc=scaffold117_contigs=4:7629-8201 Augustus predicted protein sequence Tomato scaffold117_contigs=4~7629-8201 DMAP_binding PF06464.6 g21077.t1 - 0.048 14.2 0.8 0.057 14 0.6 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:224320-224589 Augustus predicted protein sequence Tomato scaffold792_contigs=3~224320-224589 YdjO PF14169.1 g74035.t1 - 0.026 13.9 0 0.047 13.1 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:234416-234826 Augustus predicted protein sequence Tomato scaffold2516_contigs=13~234416-234826 HTH_20 PF12840.2 g31378.t1 - 0.023 14.4 0.4 0.039 13.7 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:89473-90935 Augustus predicted protein sequence Tomato scaffold1071_contigs=7~89473-90935 Herpes_DNAp_acc PF04929.7 g1173.t1 - 3.5 6.4 5.5 4 6.3 3.8 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:50100-50453 Augustus predicted protein sequence Tomato scaffold193_contigs=2~50100-50453 Meth_synt_2 PF01717.13 g37907.t1 - 0.012 14.6 0.1 0.014 14.3 0 1 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:198990-199220 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~198990-199220 Atrophin-1 PF03154.10 g5477.t1 - 0.65 8 2.7 0.72 7.9 1.9 1 1 0 0 1 1 1 0 Atrophin-1 family | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:27099-27398 Augustus predicted protein sequence Tomato scaffold329_contigs=2~27099-27398 DUF1115 PF06544.7 g10672.t1 - 0.049 13.3 0.2 0.63 9.7 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1115) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:220812-223688 Augustus predicted protein sequence Tomato scaffold503_contigs=7~220812-223688 Tr-sialidase_C PF11052.3 g14682.t1 - 0.44 10.4 2.5 1.4 8.8 0.5 2.3 2 0 0 2 2 2 0 Trans-sialidase of Trypanosoma hydrophobic C-terminal | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:165103-165330 Augustus predicted protein sequence Tomato scaffold599_contigs=8~165103-165330 IFR3_antag PF14754.1 g8715.t1 - 0.13 11.2 0 0.34 9.8 0 1.6 1 1 1 2 2 2 0 Papain-like auto-proteinase | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:6159-6551 Augustus predicted protein sequence Tomato scaffold434_contigs=1~6159-6551 Peptidase_M16_C PF05193.16 g29131.t1 - 0.038 13.6 0 0.048 13.3 0 1.1 1 0 0 1 1 1 0 Peptidase M16 inactive domain | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:88660-89487 Augustus predicted protein sequence Tomato scaffold1013_contigs=9~88660-89487 EPO_TPO PF00758.13 g28687.t1 - 0.043 13.4 0 0.069 12.7 0 1.3 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:42530-43018 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~42530-43018 Chal_sti_synt_N PF00195.14 g57362.t1 - 0.039 13.2 0 0.044 13 0 1.1 1 0 0 1 1 1 0 Chalcone and stilbene synthases, N-terminal domain | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:326992-327429 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~326992-327429 ATHILA PF03078.10 g20231.t1 - 0.000000044 32.1 0.1 0.000000051 31.9 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:374632-375015 Augustus predicted protein sequence Tomato scaffold768_contigs=4~374632-375015 B12D PF06522.6 g47367.t1 - 0.04 13.6 0.1 0.068 12.8 0 1.3 1 1 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:288390-288855 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~288390-288855 Cytadhesin_P30 PF07271.6 g41832.t1 - 1.4 8 5 1.7 7.8 3.5 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:81612-82202 Augustus predicted protein sequence Tomato scaffold1344_contigs=2~81612-82202 DUF587 PF04532.7 g87547.t1 - 0.033 13.1 0.4 0.041 12.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF587) | Ref_seq=scaffold3287_contigs=1, transcript_loc=scaffold3287_contigs=1:1150-1602 Augustus predicted protein sequence Tomato scaffold3287_contigs=1~1150-1602 TMF_DNA_bd PF12329.3 g51235.t1 - 0.0022 17.7 1.8 0.0045 16.7 1.2 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:124183-126264 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~124183-126264 DUF2215 PF10225.4 g28694.t1 - 0.0087 15.5 3 0.013 14.9 2.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:60431-61563 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~60431-61563 RVP_2 PF08284.6 g29647.t1 - 0.13 12.1 0 0.17 11.8 0 1.2 1 0 0 1 1 1 0 Retroviral aspartyl protease | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:5599-6770 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~5599-6770 RFamide_26RFa PF11109.3 g28147.t1 - 0.13 12.1 0.2 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:142269-144754 Augustus predicted protein sequence Tomato scaffold992_contigs=3~142269-144754 Neuroparsin PF07327.6 g4113.t1 - 0.0049 17 0.1 0.54 10.5 0 2.2 2 0 0 2 2 2 2 Neuroparsin | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:26851-31470 Augustus predicted protein sequence Tomato scaffold293_contigs=5~26851-31470 DUF2100 PF09873.4 g48483.t1 - 0.058 12.8 0.1 0.062 12.7 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:43138-43410 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~43138-43410 DUF4047 PF13256.1 g33706.t1 - 0.015 15.2 2 0.019 14.9 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:66551-67568 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~66551-67568 Gloverin PF10793.4 g17984.t1 - 0.018 14.6 0 0.028 14 0 1.2 1 0 0 1 1 1 0 Gloverin-like protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:105477-106380 Augustus predicted protein sequence Tomato scaffold720_contigs=9~105477-106380 zf-RVT PF13966.1 g13683.t1 - 4.2E-009 36.6 0.1 7.1E-009 35.8 0.1 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:367735-368181 Augustus predicted protein sequence Tomato scaffold578_contigs=5~367735-368181 Seryl_tRNA_N PF02403.17 g51848.t1 - 0.11 12.5 2.9 0.2 11.7 2 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:78079-78615 Augustus predicted protein sequence Tomato scaffold1625_contigs=4~78079-78615 5_3_exonuc_N PF02739.11 g74164.t1 - 0.12 11.7 0.2 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:140941-141246 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~140941-141246 FH2 PF02181.18 g10060.t1 - 0.11 11.4 0.2 0.14 11 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:43926-45898 Augustus predicted protein sequence Tomato scaffold482_contigs=7~43926-45898 Phenyl_P_gamma PF09662.5 g13962.t1 - 0.06 13 0 0.27 10.9 0 1.9 2 0 0 2 2 2 0 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:72757-75178 Augustus predicted protein sequence Tomato scaffold583_contigs=2~72757-75178 Toxin_44 PF15523.1 g23858.t1 - 0.0073 16.1 0.1 0.011 15.6 0.1 1.1 1 0 0 1 1 1 1 Putative toxin 44 | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:62559-64983 Augustus predicted protein sequence Tomato scaffold871_contigs=9~62559-64983 NIL PF09383.5 g75535.t1 - 0.0018 17.8 2.2 1.5 8.4 0.1 2.5 2 0 0 2 2 2 2 NIL domain | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:72942-73894 Augustus predicted protein sequence Tomato scaffold2600_contigs=18~72942-73894 FlxA PF14282.1 g77262.t1 - 0.018 15 4.5 0.018 15 3.1 2.2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:162940-165917 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~162940-165917 YdjO PF14169.1 g70297.t1 - 0.14 11.5 0.1 0.26 10.7 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:383496-384020 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~383496-384020 CDC45 PF02724.9 g47382.t1 - 0.0017 16.5 9.6 0.0017 16.4 6.7 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:333087-337533 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~333087-337533 Retrotrans_gag PF03732.12 g26028.t1 - 0.00046 20.2 0 0.00054 19.9 0 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:202092-202463 Augustus predicted protein sequence Tomato scaffold942_contigs=10~202092-202463 UDG PF03167.14 g56613.t1 - 0.034 13.6 0 0.04 13.3 0 1.1 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:565986-566453 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~565986-566453 Reo_sigmaC PF04582.7 g19368.t1 - 0.18 10.9 1 0.27 10.3 0.7 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:232042-233707 Augustus predicted protein sequence Tomato scaffold751_contigs=13~232042-233707 Trypan_glycop_C PF10659.4 g78115.t1 - 0.013 15.7 0 0.019 15.2 0 1.2 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein C-terminal domain | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:255386-256187 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~255386-256187 Adaptin_binding PF10199.4 g62266.t1 - 0.048 13.9 2.8 0.048 13.9 1.9 2.1 1 1 1 2 2 2 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:326751-329372 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~326751-329372 NUT_C PF12882.2 g33846.t1 - 0.084 12.4 0 0.12 11.9 0 1.2 1 0 0 1 1 1 0 NUT protein C terminal | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:195200-198216 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~195200-198216 HTH_DeoR PF08220.7 g29977.t1 - 0.093 12.2 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:34128-43650 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~34128-43650 HC2 PF07382.6 g7182.t1 - 5.5 6.8 15.6 0.59 9.9 7 2.1 2 0 0 2 2 2 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:337286-339619 Augustus predicted protein sequence Tomato scaffold387_contigs=7~337286-339619 PI31_Prot_C PF08577.6 g59492.t1 - 0.083 13.5 1.3 0.28 11.8 0.9 2 1 0 0 1 1 1 0 PI31 proteasome regulator | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:78256-81203 Augustus predicted protein sequence Tomato scaffold1925_contigs=8~78256-81203 DUF1985 PF09331.6 g75980.t1 - 0.0000063 26 0 0.0000085 25.6 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:194946-196208 Augustus predicted protein sequence Tomato scaffold2615_contigs=8~194946-196208 DUF2477 PF10631.4 g24550.t1 - 0.7 10.1 3.6 1.3 9.2 2.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2477) | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:29884-34031 Augustus predicted protein sequence Tomato scaffold888_contigs=4~29884-34031 APG9 PF04109.11 g38023.t1 - 0.1 11.5 0.9 0.13 11.1 0.6 1.1 1 0 0 1 1 1 0 Autophagy protein Apg9 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:8557-9661 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~8557-9661 Nop14 PF04147.7 g28045.t1 - 0.0016 16.4 2.7 0.0016 16.4 1.9 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:125177-125912 Augustus predicted protein sequence Tomato scaffold990_contigs=6~125177-125912 LPAM_1 PF08139.7 g14803.t1 - 0.34 11.2 3.3 0.54 10.5 2.3 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site | Ref_seq=scaffold606_contigs=3, transcript_loc=scaffold606_contigs=3:6074-6301 Augustus predicted protein sequence Tomato scaffold606_contigs=3~6074-6301 zf-C3HC PF07967.8 g14532.t1 - 0.083 12.6 0.8 0.097 12.4 0.5 1.3 1 1 0 1 1 1 0 C3HC zinc finger-like | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:10647-10871 Augustus predicted protein sequence Tomato scaffold597_contigs=5~10647-10871 E2R135 PF11570.3 g16684.t1 - 0.024 14.7 0.2 0.042 13.9 0.1 1.3 1 0 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:55631-58791 Augustus predicted protein sequence Tomato scaffold676_contigs=2~55631-58791 CAF-1_p150 PF11600.3 g8530.t1 - 0.000058 22.5 26.2 0.000071 22.2 18.1 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:147934-148554 Augustus predicted protein sequence Tomato scaffold428_contigs=8~147934-148554 AGT PF11440.3 g60618.t1 - 0.0058 15.5 0 0.0086 14.9 0 1.2 1 0 0 1 1 1 1 DNA alpha-glucosyltransferase | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:106925-107636 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~106925-107636 Thioesterase PF00975.15 g16468.t1 - 0.2 11.8 1.8 0.23 11.6 1.3 1.3 1 1 0 1 1 1 0 Thioesterase domain | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:201353-201817 Augustus predicted protein sequence Tomato scaffold671_contigs=7~201353-201817 Bindin PF02084.10 g38109.t1 - 0.11 12.5 3.2 0.1 12.6 2.2 1 1 0 0 1 1 1 0 Bindin | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:260146-260352 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~260146-260352 Trypan_PARP PF05887.6 g2522.t1 - 3.4 7.4 18.2 4.4 7.1 12.6 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold242_contigs=15, transcript_loc=scaffold242_contigs=15:37728-38696 Augustus predicted protein sequence Tomato scaffold242_contigs=15~37728-38696 DUF1347 PF07079.6 g39750.t1 - 0.043 12 0 0.048 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:150293-150757 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~150293-150757 DUF1479 PF07350.7 g32982.t1 - 0.072 11.5 0 0.09 11.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1479) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:611240-612528 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~611240-612528 Mannitol_dh_C PF08125.8 g66399.t1 - 0.047 12.8 0 0.058 12.5 0 1.1 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain | Ref_seq=scaffold2161_contigs=13, transcript_loc=scaffold2161_contigs=13:215432-215940 Augustus predicted protein sequence Tomato scaffold2161_contigs=13~215432-215940 DUF457 PF04307.9 g55292.t1 - 0.041 13.2 0.5 0.059 12.7 0.4 1.2 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:667445-668307 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~667445-668307 DUF2360 PF10152.4 g61135.t1 - 1.4 9.2 4.8 2 8.6 3.3 1.4 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:816868-819362 Augustus predicted protein sequence Tomato scaffold1963_contigs=41~816868-819362 DUF2617 PF10936.3 g76811.t1 - 0.049 13.1 0 0.06 12.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF2617 | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:787404-787772 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~787404-787772 RNase_H2-Ydr279 PF09468.5 g73443.t1 - 0.029 13.5 4 0.031 13.4 2.8 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2458_contigs=3, transcript_loc=scaffold2458_contigs=3:23682-24445 Augustus predicted protein sequence Tomato scaffold2458_contigs=3~23682-24445 Fzo_mitofusin PF04799.8 g61290.t1 - 0.032 13.6 6.2 0.03 13.7 3.5 1.7 1 1 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:113752-114489 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~113752-114489 Isy1 PF06246.7 g4930.t1 - 0.00017 21 5 0.00019 20.9 3.5 1 1 0 0 1 1 1 1 Isy1-like splicing family | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:140020-140343 Augustus predicted protein sequence Tomato scaffold311_contigs=5~140020-140343 DUF1843 PF08898.5 g70184.t1 - 0.093 12.7 0.1 3 7.9 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:13504-14557 Augustus predicted protein sequence Tomato scaffold2332_contigs=1~13504-14557 FH2 PF02181.18 g47433.t1 - 0.0063 15.4 0 0.0078 15.1 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1494_contigs=2, transcript_loc=scaffold1494_contigs=2:23276-23875 Augustus predicted protein sequence Tomato scaffold1494_contigs=2~23276-23875 zf-BED PF02892.10 g142.t1 - 0.041 13.6 0.9 0.089 12.5 0.6 1.5 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold7_contigs=9, transcript_loc=scaffold7_contigs=9:20400-21053 Augustus predicted protein sequence Tomato scaffold7_contigs=9~20400-21053 DUF1632 PF07857.7 g58894.t1 - 0.076 12.2 0 0.091 11.9 0 1.1 1 0 0 1 1 1 0 CEO family (DUF1632) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:140943-141233 Augustus predicted protein sequence Tomato scaffold1879_contigs=24~140943-141233 DUF3337 PF11816.3 g84568.t1 - 0.013 14.9 3.8 0.014 14.8 2.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:89338-89718 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~89338-89718 Ku_C PF03730.9 g75670.t1 - 1.8 9.1 7 12 6.5 0.3 2.6 3 0 0 3 3 3 0 Ku70/Ku80 C-terminal arm | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:36642-37707 Augustus predicted protein sequence Tomato scaffold2606_contigs=15~36642-37707 ATHILA PF03078.10 g52812.t1 - 0.064 11.8 0 0.066 11.7 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:63900-64244 Augustus predicted protein sequence Tomato scaffold1648_contigs=6~63900-64244 Corona_nucleoca PF00937.13 g36577.t1 - 0.012 14.5 0.2 0.016 14.1 0.1 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:129243-129785 Augustus predicted protein sequence Tomato scaffold1204_contigs=5~129243-129785 DUF3584 PF12128.3 g50322.t1 - 0.0088 13.4 3.6 0.012 13 2.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:56117-59232 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~56117-59232 DUF4235 PF14019.1 g31272.t1 - 0.12 12.2 1.2 0.78 9.6 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4235) | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:355739-357145 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~355739-357145 zf-U11-48K PF05253.7 g56129.t1 - 0.031 14 1 0.064 12.9 0.7 1.5 1 0 0 1 1 1 0 U11-48K-like CHHC zinc finger | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:1437-2280 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~1437-2280 Peptidase_A3 PF02160.10 g28533.t1 - 0.013 15 0 2.3 7.7 0 2.1 1 1 1 2 2 2 0 Cauliflower mosaic virus peptidase (A3) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:271938-272713 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~271938-272713 HTH_6 PF01418.12 g83169.t1 - 0.062 13 0 0.11 12.2 0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family | Ref_seq=scaffold2757_contigs=5, transcript_loc=scaffold2757_contigs=5:58896-59712 Augustus predicted protein sequence Tomato scaffold2757_contigs=5~58896-59712 Zip PF02535.17 g79290.t1 - 0.0012 17.9 7.1 0.0013 17.7 4.9 1.2 1 0 0 1 1 1 1 ZIP Zinc transporter | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:186517-186903 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~186517-186903 RinB PF06116.7 g42847.t1 - 1.8 8.2 3.7 3.5 7.3 2.6 1.5 1 0 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:246040-246653 Augustus predicted protein sequence Tomato scaffold1373_contigs=18~246040-246653 DUF2564 PF10819.3 g26592.t1 - 0.42 10.7 2.5 0.27 11.3 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:32036-32302 Augustus predicted protein sequence Tomato scaffold954_contigs=1~32036-32302 zf-SAP30 PF13866.1 g51533.t1 - 0.11 12.2 0.2 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 SAP30 zinc-finger | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:224319-225029 Augustus predicted protein sequence Tomato scaffold1616_contigs=7~224319-225029 GP41 PF00517.12 g69081.t1 - 0.015 14.8 0.6 0.016 14.7 0.4 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:14099-14404 Augustus predicted protein sequence Tomato scaffold2253_contigs=17~14099-14404 Pneumo_ncap PF03246.8 g62299.t1 - 0.028 12.9 0 0.035 12.6 0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:449634-450002 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~449634-450002 Pox_LP_H2 PF03356.10 g2305.t1 - 0.12 12 0 0.15 11.7 0 1.1 1 0 0 1 1 1 0 Viral late protein H2 | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:63792-64157 Augustus predicted protein sequence Tomato scaffold234_contigs=2~63792-64157 Hemopexin PF00045.14 g25121.t1 - 0.17 11.6 1.9 24 4.7 0.1 3.1 3 0 0 3 3 3 0 Hemopexin | Ref_seq=scaffold916_contigs=9, transcript_loc=scaffold916_contigs=9:27472-32009 Augustus predicted protein sequence Tomato scaffold916_contigs=9~27472-32009 3D PF06725.6 g71943.t1 - 0.002 18 0 0.003 17.4 0 1.4 1 0 0 1 1 1 1 3D domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:407044-407271 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~407044-407271 Vfa1 PF08432.5 g6681.t1 - 6.2 6.8 31.2 6.6 6.7 21.6 1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:257996-258202 Augustus predicted protein sequence Tomato scaffold380_contigs=11~257996-258202 DUF1411 PF07199.6 g29008.t1 - 0.21 10.9 2 2.3 7.5 0 2 1 1 0 2 2 2 0 Protein of unknown function (DUF1411) | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:143385-143657 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~143385-143657 Tom22 PF04281.8 g9622.t1 - 0.24 10.9 1.2 0.87 9.1 0 2 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom22 | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:238660-239559 Augustus predicted protein sequence Tomato scaffold462_contigs=7~238660-239559 IFP_35_N PF07334.8 g56214.t1 - 0.0098 15.8 1.9 0.024 14.5 1.3 1.7 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:103658-104469 Augustus predicted protein sequence Tomato scaffold1793_contigs=8~103658-104469 R_equi_Vir PF05526.6 g44637.t1 - 0.097 12.2 0 0.13 11.8 0 1.2 1 0 0 1 1 1 0 Rhodococcus equi virulence-associated protein | Ref_seq=scaffold1437_contigs=6, transcript_loc=scaffold1437_contigs=6:51008-53562 Augustus predicted protein sequence Tomato scaffold1437_contigs=6~51008-53562 DUF1347 PF07079.6 g70295.t1 - 0.092 10.9 0 0.12 10.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:377736-378290 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~377736-378290 TBCC PF07986.7 g8612.t1 - 0.021 14.2 0 0.024 14 0 1.1 1 0 0 1 1 1 0 Tubulin binding cofactor C | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:240912-241504 Augustus predicted protein sequence Tomato scaffold429_contigs=9~240912-241504 ING PF12998.2 g1256.t1 - 0.07 13.4 0.1 0.07 13.4 0.1 2.3 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:55439-55975 Augustus predicted protein sequence Tomato scaffold195_contigs=3~55439-55975 Rab5ip PF07019.7 g19871.t1 - 0.37 10.9 3.1 3.7 7.7 0.5 2.1 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:151511-151816 Augustus predicted protein sequence Tomato scaffold760_contigs=13~151511-151816 UBN2_2 PF14227.1 g55088.t1 - 0.000049 22.8 0.3 0.00036 20 0.3 1.9 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:149029-149304 Augustus predicted protein sequence Tomato scaffold1736_contigs=8~149029-149304 BASP1 PF05466.7 g20141.t1 - 0.25 11.1 1.7 0.29 10.9 1.2 1.1 1 0 0 1 1 1 0 Brain acid soluble protein 1 (BASP1 protein) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:45210-45494 Augustus predicted protein sequence Tomato scaffold768_contigs=4~45210-45494 NAM-associated PF14303.1 g67135.t1 - 0.0099 16.2 9.3 0.012 15.9 6.4 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:80887-81207 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~80887-81207 Thioredoxin_5 PF13743.1 g51833.t1 - 0.053 13 0.3 0.063 12.8 0.2 1.2 1 0 0 1 1 1 0 Thioredoxin | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:21607-22209 Augustus predicted protein sequence Tomato scaffold1625_contigs=4~21607-22209 Rad50_zn_hook PF04423.9 g60261.t1 - 0.0015 17.9 0.8 0.0015 17.9 0.5 3 4 0 0 4 4 4 1 Rad50 zinc hook motif | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:91335-92008 Augustus predicted protein sequence Tomato scaffold1945_contigs=4~91335-92008 DUF4331 PF14224.1 g69777.t1 - 0.049 12.8 0 0.06 12.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4331) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:846373-846906 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~846373-846906 Med17 PF10156.4 g2562.t1 - 0.3 9.3 3.5 0.38 8.9 2.4 1.1 1 0 0 1 1 1 0 Subunit 17 of Mediator complex | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:117568-117966 Augustus predicted protein sequence Tomato scaffold243_contigs=2~117568-117966 NPV_P10 PF05531.7 g46141.t1 - 0.076 13.2 0.7 0.12 12.5 0.5 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:185894-187024 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~185894-187024 zf-CCHC PF00098.18 g15924.t1 - 0.00026 20.7 1.3 0.00038 20.2 0.9 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:185038-185334 Augustus predicted protein sequence Tomato scaffold651_contigs=13~185038-185334 HTH_36 PF13730.1 g64893.t1 - 0.11 12.6 0 0.67 10.1 0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold2099_contigs=9, transcript_loc=scaffold2099_contigs=9:4253-4612 Augustus predicted protein sequence Tomato scaffold2099_contigs=9~4253-4612 DUF3135 PF11333.3 g71619.t1 - 0.11 12.6 0.1 0.24 11.5 0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3135) | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:53756-54067 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~53756-54067 zf-Paramyx-P PF13008.2 g46882.t1 - 7.5 5.8 11.8 0.47 9.6 0.1 2.4 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:498144-499733 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~498144-499733 FH2 PF02181.18 g54886.t1 - 0.02 13.7 0.2 0.038 12.8 0 1.4 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:75760-76545 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~75760-76545 Cor1 PF04803.7 g84915.t1 - 0.13 12 0.3 0.16 11.7 0.2 1.1 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:93822-94118 Augustus predicted protein sequence Tomato scaffold2784_contigs=1~93822-94118 Peptidase_C48 PF02902.14 g9193.t1 - 0.086 12.4 0.2 0.17 11.4 0.1 1.6 1 1 0 1 1 1 0 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:32952-33251 Augustus predicted protein sequence Tomato scaffold449_contigs=4~32952-33251 DUF919 PF06034.6 g49991.t1 - 0.065 12.8 0.5 0.14 11.7 0.4 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:299-817 Augustus predicted protein sequence Tomato scaffold1552_contigs=5~299-817 Myosin_tail_1 PF01576.14 g12510.t1 - 0.00027 18.8 5.4 0.00031 18.6 3.7 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:121220-123168 Augustus predicted protein sequence Tomato scaffold556_contigs=11~121220-123168 SH3BGR PF04908.10 g20230.t1 - 1.3 8.9 3.7 8 6.4 0.4 2.4 1 1 1 2 2 2 0 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:371574-373896 Augustus predicted protein sequence Tomato scaffold768_contigs=4~371574-373896 HTH_Tnp_Tc3_1 PF11427.3 g47855.t1 - 0.0093 15.5 0.1 0.014 15 0 1.3 1 0 0 1 1 1 1 Tc3 transposase | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:391703-392518 Augustus predicted protein sequence Tomato scaffold1499_contigs=18~391703-392518 CbiX PF01903.12 g44115.t1 - 0.038 14.1 0 1 9.4 0 2.1 1 1 0 1 1 1 0 CbiX | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:137642-138975 Augustus predicted protein sequence Tomato scaffold1408_contigs=9~137642-138975 POX PF07526.6 g84074.t1 - 0.069 13.3 0.3 0.077 13.2 0.2 1.1 1 0 0 1 1 1 0 Associated with HOX | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:304474-304764 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~304474-304764 ATHILA PF03078.10 g1380.t1 - 0.0017 17 0 0.002 16.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:59442-59984 Augustus predicted protein sequence Tomato scaffold200_contigs=3~59442-59984 VGCC_beta4Aa_N PF12052.3 g76810.t1 - 0.0055 16.5 0.4 0.0055 16.5 0.3 1.6 2 0 0 2 2 2 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:780472-783580 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~780472-783580 GAS2 PF02187.12 g73468.t1 - 0.071 12.8 0 0.085 12.6 0 1.1 1 0 0 1 1 1 0 Growth-Arrest-Specific Protein 2 Domain | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:87511-87723 Augustus predicted protein sequence Tomato scaffold2465_contigs=4~87511-87723 DUF4219 PF13961.1 g56563.t1 - 0.00011 21.4 0.1 0.0002 20.6 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:230155-230845 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~230155-230845 DUF2365 PF10157.4 g12937.t1 - 0.02 14.7 0.1 0.024 14.5 0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:455610-455924 Augustus predicted protein sequence Tomato scaffold561_contigs=10~455610-455924 Myc_N PF01056.13 g43492.t1 - 0.29 10.2 5.5 0.28 10.2 3.8 1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:35848-36162 Augustus predicted protein sequence Tomato scaffold1387_contigs=13~35848-36162 A2M PF00207.17 g44340.t1 - 0.044 13.3 0 0.06 12.9 0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:135745-136179 Augustus predicted protein sequence Tomato scaffold1426_contigs=9~135745-136179 Cytadhesin_P30 PF07271.6 g61443.t1 - 0.44 9.7 7.6 0.52 9.5 5.3 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:233084-234617 Augustus predicted protein sequence Tomato scaffold1970_contigs=14~233084-234617 RVT_3 PF13456.1 g30229.t1 - 0.097 12.4 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:169702-171347 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~169702-171347 UBN2 PF14223.1 g50584.t1 - 0.077 12.7 2.1 0.17 11.6 0.1 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:107578-109195 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~107578-109195 DUF4098 PF13345.1 g22012.t1 - 0.19 11.7 5.5 0.71 9.8 1 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4098) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:576685-580098 Augustus predicted protein sequence Tomato scaffold817_contigs=11~576685-580098 SH3BGR PF04908.10 g71626.t1 - 0.04 13.8 0.2 0.072 13 0.2 1.4 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:95710-96774 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~95710-96774 Cwf_Cwc_15 PF04889.7 g30647.t1 - 0.01 15.5 8.3 0.014 15.1 5.7 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:446908-449217 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~446908-449217 HALZ PF02183.13 g85459.t1 - 0.0027 17.3 10.5 0.023 14.4 1.7 3.3 2 1 1 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:2677-3897 Augustus predicted protein sequence Tomato scaffold2805_contigs=1~2677-3897 Mis14 PF08641.7 g38609.t1 - 0.11 12.5 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Kinetochore protein Mis14 like | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:50526-50813 Augustus predicted protein sequence Tomato scaffold1248_contigs=3~50526-50813 DUF2493 PF10686.4 g40338.t1 - 0.079 12.5 0 0.38 10.3 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2493) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:187090-188938 Augustus predicted protein sequence Tomato scaffold1299_contigs=5~187090-188938 bZIP_2 PF07716.10 g38825.t1 - 0.014 15.1 0 0.022 14.5 0 1.2 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:193806-194102 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~193806-194102 Herpes_BLRF2 PF05812.7 g12661.t1 - 0.0075 16 0.6 0.013 15.2 0.4 1.4 1 0 0 1 1 1 1 Herpesvirus BLRF2 protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:656275-657359 Augustus predicted protein sequence Tomato scaffold556_contigs=11~656275-657359 Neisseria_TspB PF05616.8 g44693.t1 - 1.7 6.9 6.2 3.3 5.9 4.3 1.4 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:42699-44366 Augustus predicted protein sequence Tomato scaffold1438_contigs=6~42699-44366 DUF4453 PF14627.1 g69120.t1 - 0.011 15.7 0.2 5.1 7.2 0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4453) | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:53356-55310 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~53356-55310 ATHILA PF03078.10 g73830.t1 - 0.03 12.9 0 0.03 12.9 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:119311-119767 Augustus predicted protein sequence Tomato scaffold2510_contigs=23~119311-119767 NAM-associated PF14303.1 g45131.t1 - 0.00028 21.2 2.8 0.00034 20.9 1.9 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:97105-99025 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~97105-99025 Antimicrobial_4 PF08024.6 g852.t1 - 0.03 14.1 0.4 11 5.9 0 2.3 2 0 0 2 2 2 0 Ant antimicrobial peptide | Ref_seq=scaffold158_contigs=1, transcript_loc=scaffold158_contigs=1:3883-6008 Augustus predicted protein sequence Tomato scaffold158_contigs=1~3883-6008 DAP10 PF07213.6 g3154.t1 - 0.06 13.1 0.8 2.2 8 0 2.3 1 1 1 2 2 2 0 DAP10 membrane protein | Ref_seq=scaffold260_contigs=3, transcript_loc=scaffold260_contigs=3:21379-23685 Augustus predicted protein sequence Tomato scaffold260_contigs=3~21379-23685 Med12 PF09497.5 g60125.t1 - 0.13 12.2 0.3 0.59 10.1 0.2 2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:110135-110900 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~110135-110900 DUF3884 PF13024.1 g12207.t1 - 0.13 11.6 0 0.21 11 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:275140-275466 Augustus predicted protein sequence Tomato scaffold540_contigs=6~275140-275466 DUF3079 PF11278.3 g80103.t1 - 0.093 12.2 0.9 0.18 11.3 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3079) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:112604-112954 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~112604-112954 Chlorovi_GP_rpt PF06598.6 g50630.t1 - 0.26 11.1 2.1 0.37 10.6 1.4 1.2 1 0 0 1 1 1 0 Chlorovirus glycoprotein repeat | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:266306-266551 Augustus predicted protein sequence Tomato scaffold1568_contigs=6~266306-266551 DUF1978 PF09321.5 g52230.t1 - 0.00067 19.1 0.6 0.00074 19 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1978) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:197661-197921 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~197661-197921 Peptidase_C25 PF01364.13 g15177.t1 - 0.047 12.6 0.4 0.048 12.6 0.3 1.1 1 0 0 1 1 1 0 Peptidase family C25 | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:27135-27563 Augustus predicted protein sequence Tomato scaffold621_contigs=9~27135-27563 ATHILA PF03078.10 g77085.t1 - 0.0088 14.6 0 0.0095 14.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:93079-93438 Augustus predicted protein sequence Tomato scaffold2647_contigs=26~93079-93438 Spc7 PF08317.6 g31046.t1 - 0.0051 15.5 1.5 0.0059 15.3 1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:18521-18968 Augustus predicted protein sequence Tomato scaffold1054_contigs=13~18521-18968 Tol_Tol_Ttg2 PF05494.7 g948.t1 - 0.0073 15.8 3.1 1.1 8.8 0.1 3.1 2 1 1 3 3 3 2 Toluene tolerance, Ttg2 | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:85558-87688 Augustus predicted protein sequence Tomato scaffold182_contigs=2~85558-87688 Retrotrans_gag PF03732.12 g48246.t1 - 0.00041 20.3 0.1 0.00068 19.6 0.1 1.4 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:104068-104560 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~104068-104560 YdjO PF14169.1 g77758.t1 - 0.1 12 0 0.21 11 0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:265120-267092 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~265120-267092 PH_7 PF15408.1 g65953.t1 - 0.072 12.9 0.1 2.6 7.9 0 2.3 2 1 0 2 2 2 0 Pleckstrin homology domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:244771-247548 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~244771-247548 ATHILA PF03078.10 g83374.t1 - 0.019 13.5 0 0.021 13.4 0 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:244026-244439 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~244026-244439 RNase_H2-Ydr279 PF09468.5 g7980.t1 - 0.23 10.6 4.7 0.32 10.1 3.3 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:98756-99541 Augustus predicted protein sequence Tomato scaffold413_contigs=6~98756-99541 CDK2AP PF09806.4 g18750.t1 - 0.018 15.2 1.1 0.018 15.2 0.7 2.8 3 1 0 3 3 3 0 Cyclin-dependent kinase 2-associated protein | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:353050-354762 Augustus predicted protein sequence Tomato scaffold731_contigs=13~353050-354762 Chorion_S16 PF05836.7 g79413.t1 - 0.0049 16.7 0 0.041 13.7 0 2.1 1 1 1 2 2 2 1 Chorion protein S16 | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:113935-117102 Augustus predicted protein sequence Tomato scaffold2694_contigs=28~113935-117102 NAM-associated PF14303.1 g13855.t1 - 0.0072 16.6 8.5 0.0082 16.4 5.9 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:396533-396877 Augustus predicted protein sequence Tomato scaffold582_contigs=8~396533-396877 Pox_A28 PF04584.9 g56999.t1 - 0.032 14.1 0.4 6.4 6.6 0 2.2 1 1 1 2 2 2 0 Poxvirus A28 family | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:57651-62554 Augustus predicted protein sequence Tomato scaffold1824_contigs=4~57651-62554 Usp PF00582.21 g59479.t1 - 0.034 14.3 0.3 0.06 13.5 0.2 1.3 1 0 0 1 1 1 0 Universal stress protein family | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:30323-32088 Augustus predicted protein sequence Tomato scaffold1925_contigs=8~30323-32088 Med13_C PF06333.7 g15973.t1 - 0.4 9.1 5.8 0.51 8.8 4 1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:434870-435397 Augustus predicted protein sequence Tomato scaffold651_contigs=13~434870-435397 DUF1524 PF07510.6 g78656.t1 - 0.067 13 0 0.094 12.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:168909-169433 Augustus predicted protein sequence Tomato scaffold2673_contigs=12~168909-169433 IU_nuc_hydro PF01156.14 g80825.t1 - 0.076 12.2 0.1 0.1 11.7 0 1 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:499778-502578 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~499778-502578 Chromo PF00385.19 g76893.t1 - 0.0000046 26.2 0 0.0000087 25.3 0 1.5 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:217894-218804 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~217894-218804 zf-RNPHF PF08080.7 g48244.t1 - 0.0041 16.5 0.7 1.1 8.8 0.1 2.7 3 0 0 3 3 3 2 RNPHF zinc finger | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:102735-103597 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~102735-103597 RNA_Me_trans PF04252.8 g34226.t1 - 0.12 11.7 0 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:152592-152879 Augustus predicted protein sequence Tomato scaffold1146_contigs=6~152592-152879 HsbA PF12296.3 g87374.t1 - 0.0076 16 0.2 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 Hydrophobic surface binding protein A | Ref_seq=scaffold3028_contigs=1, transcript_loc=scaffold3028_contigs=1:2000-3735 Augustus predicted protein sequence Tomato scaffold3028_contigs=1~2000-3735 DUF4201 PF13870.1 g70460.t1 - 0.031 13.7 7.3 0.11 11.9 4.8 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:398629-399471 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~398629-399471 zf-ribbon_3 PF13248.1 g83264.t1 - 0.11 11.7 0.4 0.32 10.2 0.3 1.9 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:70495-73374 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~70495-73374 Clusterin PF01093.12 g61696.t1 - 0.8 8.4 3.1 1 8 2.2 1.2 1 0 0 1 1 1 0 Clusterin | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:151806-152581 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~151806-152581 AflR PF08493.5 g27910.t1 - 0.17 10.9 1.1 0.18 10.8 0.7 1 1 0 0 1 1 1 0 Aflatoxin regulatory protein | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:83004-83456 Augustus predicted protein sequence Tomato scaffold987_contigs=6~83004-83456 zf-FPG_IleRS PF06827.9 g54328.t1 - 0.059 13 0.6 0.12 12 0.4 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:5349-5585 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~5349-5585 DUF4144 PF13642.1 g72383.t1 - 0.01 16.1 2.1 0.014 15.7 1.5 1.1 1 0 0 1 1 1 0 protein structure with unknown function | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1254419-1254709 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1254419-1254709 Avl9 PF09794.4 g2853.t1 - 0.049 12.1 0.1 0.054 11.9 0.1 1.1 1 0 0 1 1 1 0 Transport protein Avl9 | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:5043-5447 Augustus predicted protein sequence Tomato scaffold256_contigs=5~5043-5447 PsbP PF01789.11 g10367.t1 - 0.028 13.8 0 0.047 13.1 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:78767-79366 Augustus predicted protein sequence Tomato scaffold495_contigs=2~78767-79366 TMEM219 PF14940.1 g15220.t1 - 0.025 13.6 0 0.025 13.6 0 1.1 1 0 0 1 1 1 0 Transmembrane 219 | Ref_seq=scaffold622_contigs=1, transcript_loc=scaffold622_contigs=1:40274-41083 Augustus predicted protein sequence Tomato scaffold622_contigs=1~40274-41083 Tri3 PF07428.6 g80230.t1 - 0.043 12.5 0 0.049 12.3 0 1.1 1 0 0 1 1 1 0 15-O-acetyltransferase Tri3 | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:815679-816200 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~815679-816200 DUF1843 PF08898.5 g15362.t1 - 0.091 12.8 0 6.7 6.8 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:217491-217760 Augustus predicted protein sequence Tomato scaffold624_contigs=9~217491-217760 DUF2264 PF10022.4 g80270.t1 - 0.019 13.6 0.4 0.022 13.4 0.3 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:942285-942683 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~942285-942683 ER-remodelling PF14755.1 g62828.t1 - 0.005 16.9 0.4 0.005 16.9 0.2 1 1 0 0 1 1 1 1 Intracellular membrane remodeller | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:1-106 Augustus predicted protein sequence Tomato scaffold2011_contigs=8~1-106 Methyltransf_29 PF03141.11 g8609.t1 - 0.013 13.9 0 0.013 13.8 0 1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:224914-225243 Augustus predicted protein sequence Tomato scaffold429_contigs=9~224914-225243 Sigma70_ner PF04546.8 g47159.t1 - 0.0065 16.1 1.6 0.01 15.4 1.1 1.2 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:58697-62832 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~58697-62832 ATE_N PF04376.8 g87398.t1 - 0.82 9.5 4.6 16 5.4 0 3 4 0 0 4 4 4 0 Arginine-tRNA-protein transferase, N terminus | Ref_seq=scaffold3047_contigs=1, transcript_loc=scaffold3047_contigs=1:2741-4968 Augustus predicted protein sequence Tomato scaffold3047_contigs=1~2741-4968 RR_TM4-6 PF06459.7 g64994.t1 - 2 8.2 7.8 2.8 7.7 5.4 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:10677-11602 Augustus predicted protein sequence Tomato scaffold2109_contigs=23~10677-11602 CRC_subunit PF08624.5 g19664.t1 - 0.034 14 0 0.046 13.6 0 1.2 1 0 0 1 1 1 0 Chromatin remodelling complex Rsc7/Swp82 subunit | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:25687-26360 Augustus predicted protein sequence Tomato scaffold757_contigs=4~25687-26360 Delta_lysin PF05372.6 g45845.t1 - 0.041 13.2 0 0.073 12.4 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:251226-251819 Augustus predicted protein sequence Tomato scaffold1464_contigs=11~251226-251819 zf-CCHC PF00098.18 g63556.t1 - 0.0052 16.6 0.5 0.0052 16.6 0.4 2.4 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:483598-488993 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~483598-488993 GRP PF07172.6 g86057.t1 - 0.046 14.2 5.8 0.053 14 4 1.2 1 0 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:49230-50146 Augustus predicted protein sequence Tomato scaffold2834_contigs=1~49230-50146 FMN_red PF03358.10 g1382.t1 - 0.021 14.3 0 0.023 14.2 0 1.1 1 0 0 1 1 1 0 NADPH-dependent FMN reductase | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:64963-65211 Augustus predicted protein sequence Tomato scaffold200_contigs=3~64963-65211 TMEM125 PF15109.1 g87684.t1 - 0.1 12.7 0.5 0.11 12.5 0.3 1.1 1 0 0 1 1 1 0 TMEM125 protein family | Ref_seq=scaffold3626_contigs=1, transcript_loc=scaffold3626_contigs=1:1-1209 Augustus predicted protein sequence Tomato scaffold3626_contigs=1~1-1209 DUF755 PF05501.6 g21567.t1 - 0.66 10 13.3 0.78 9.8 9.2 1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:64628-64837 Augustus predicted protein sequence Tomato scaffold801_contigs=2~64628-64837 ORC6 PF05460.8 g55436.t1 - 8 5.4 9.6 9.7 5.1 6.6 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:182838-183479 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~182838-183479 Patched PF02460.13 g68507.t1 - 0.99 7.2 4.3 6.4 4.5 0.2 2 2 0 0 2 2 2 0 Patched family | Ref_seq=scaffold2213_contigs=11, transcript_loc=scaffold2213_contigs=11:43746-45407 Augustus predicted protein sequence Tomato scaffold2213_contigs=11~43746-45407 DBD_Tnp_Mut PF03108.10 g16505.t1 - 0.0016 17.9 0 0.0031 17 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:84837-87404 Augustus predicted protein sequence Tomato scaffold672_contigs=7~84837-87404 DUF444 PF04285.7 g70717.t1 - 0.12 11 0 0.13 10.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF444) | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:97925-98755 Augustus predicted protein sequence Tomato scaffold2348_contigs=26~97925-98755 DUF2368 PF10166.4 g84752.t1 - 0.13 11.9 0 0.24 11 0 1.4 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:11013-11453 Augustus predicted protein sequence Tomato scaffold2779_contigs=1~11013-11453 RRM_6 PF14259.1 g52156.t1 - 0.11 12.4 0 0.23 11.4 0 1.5 1 0 0 1 1 1 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:252490-253762 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~252490-253762 Retrotrans_gag PF03732.12 g37213.t1 - 0.13 12.3 0 0.21 11.6 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:31196-31576 Augustus predicted protein sequence Tomato scaffold1215_contigs=2~31196-31576 Peptidase_S30 PF01577.11 g72165.t1 - 0.083 12.2 8.4 0.096 12 5.9 1.1 1 0 0 1 1 1 0 Potyvirus P1 protease | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:452380-452748 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~452380-452748 DUF2826 PF11442.3 g78347.t1 - 0.12 12 0.1 6.2 6.4 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2826) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:268218-268701 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~268218-268701 Nop14 PF04147.7 g73950.t1 - 0.87 7.4 26.5 0.86 7.4 18.4 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:321968-322360 Augustus predicted protein sequence Tomato scaffold2515_contigs=14~321968-322360 MHCassoc_trimer PF08831.5 g64594.t1 - 0.068 13 1.3 0.12 12.2 0.9 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:62123-62560 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~62123-62560 RVT_3 PF13456.1 g27609.t1 - 0.018 14.7 0.1 0.032 13.9 0.1 1.5 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:52069-53735 Augustus predicted protein sequence Tomato scaffold982_contigs=2~52069-53735 FeS PF04060.8 g39160.t1 - 0.19 11.3 1.1 0.34 10.5 0.7 1.4 1 0 0 1 1 1 0 Putative Fe-S cluster | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:148004-148237 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~148004-148237 KIF1B PF12423.3 g24524.t1 - 0.8 9.7 3.1 28 4.8 1.1 2.5 2 1 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:26551-26841 Augustus predicted protein sequence Tomato scaffold886_contigs=4~26551-26841 Integrase_DNA PF02920.10 g25398.t1 - 0.1 12 0.9 0.12 11.8 0.1 1.5 2 0 0 2 2 2 0 DNA binding domain of tn916 integrase | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:160347-160577 Augustus predicted protein sequence Tomato scaffold928_contigs=4~160347-160577 RMMBL PF07521.7 g19432.t1 - 0.068 12.9 0 0.12 12.2 0 1.4 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:511241-511552 Augustus predicted protein sequence Tomato scaffold751_contigs=13~511241-511552 Gp-FAR-1 PF05823.7 g86230.t1 - 0.11 12.4 0 0.14 12.1 0 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:18103-18393 Augustus predicted protein sequence Tomato scaffold2845_contigs=1~18103-18393 MCC-bdg_PDZ PF10506.4 g26864.t1 - 0.1 12.4 0.8 0.1 12.4 0.6 1.9 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:231085-231351 Augustus predicted protein sequence Tomato scaffold961_contigs=8~231085-231351 HJURP_C PF12347.3 g38284.t1 - 0.087 12.4 0.1 1.4 8.5 0 2.3 2 0 0 2 2 2 0 Holliday junction regulator protein family C-terminal repeat | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:818291-820698 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~818291-820698 DUF1455 PF07306.6 g51196.t1 - 0.27 11.3 1.4 0.45 10.5 1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1455) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:226154-226750 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~226154-226750 gag_pre-integrs PF13976.1 g18867.t1 - 0.00000016 30.8 0.7 0.0000003 29.9 0.5 1.4 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:760684-763688 Augustus predicted protein sequence Tomato scaffold731_contigs=13~760684-763688 RRM_2 PF04059.7 g75529.t1 - 0.00059 19.7 0.2 1.2 9.1 0 2.1 1 1 1 2 2 2 2 RNA recognition motif 2 | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:30274-31337 Augustus predicted protein sequence Tomato scaffold2600_contigs=18~30274-31337 MRI PF15325.1 g17499.t1 - 2.5 9 12.1 2.1 9.3 6.7 2.1 1 1 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:232572-234697 Augustus predicted protein sequence Tomato scaffold707_contigs=5~232572-234697 DUF3122 PF11320.3 g68992.t1 - 0.0051 16.7 0.3 0.11 12.3 0 2 2 0 0 2 2 2 1 Protein of unknown function (DUF3122) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:20791-21399 Augustus predicted protein sequence Tomato scaffold2245_contigs=4~20791-21399 ATHILA PF03078.10 g30059.t1 - 6.2E-009 34.9 0 0.0000051 25.3 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:384635-385880 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~384635-385880 ARGLU PF15346.1 g46092.t1 - 0.035 13.8 24.4 0.04 13.7 16.9 1 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:46886-47107 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~46886-47107 CCDC144C PF14915.1 g75504.t1 - 0.000011 24.4 19.5 0.0058 15.5 1.3 3.1 2 1 1 3 3 3 2 CCDC144C protein coiled-coil region | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:45163-46952 Augustus predicted protein sequence Tomato scaffold2599_contigs=27~45163-46952 DUF740 PF05340.7 g44183.t1 - 0.36 9.1 1.4 0.45 8.8 1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF740) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:36084-36836 Augustus predicted protein sequence Tomato scaffold1415_contigs=17~36084-36836 UPF0104 PF03706.8 g83827.t1 - 0.061 12.5 0.1 0.082 12.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1961959-1962503 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1961959-1962503 ATHILA PF03078.10 g87408.t1 - 1.3E-012 47 0 0.0000014 27.1 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold3054_contigs=1, transcript_loc=scaffold3054_contigs=1:822-1450 Augustus predicted protein sequence Tomato scaffold3054_contigs=1~822-1450 Retrotrans_gag PF03732.12 g54867.t1 - 0.015 15.3 0.1 0.032 14.2 0 1.5 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:19831-20148 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~19831-20148 DUF329 PF03884.9 g79675.t1 - 0.14 11.7 0.4 0.57 9.7 0.1 2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:149942-153748 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~149942-153748 RNA_bind PF08675.6 g28304.t1 - 0.099 12.6 0.2 0.32 11 0 1.7 2 0 0 2 2 2 0 RNA binding domain | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:219874-220233 Augustus predicted protein sequence Tomato scaffold994_contigs=5~219874-220233 Hairy_orange PF07527.8 g36052.t1 - 0.11 12.2 1 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Hairy Orange | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:196379-197321 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~196379-197321 Matrilin_ccoil PF10393.4 g12899.t1 - 0.11 11.8 0.7 0.22 10.9 0.5 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:292596-292913 Augustus predicted protein sequence Tomato scaffold561_contigs=10~292596-292913 Antistasin PF02822.9 g58077.t1 - 0.12 12.7 1.3 0.24 11.7 0.9 1.5 1 0 0 1 1 1 0 Antistasin family | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:14619-15008 Augustus predicted protein sequence Tomato scaffold1843_contigs=11~14619-15008 Proteasome_A_N PF10584.4 g54667.t1 - 0.014 14.6 0 0.026 13.8 0 1.5 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:108549-111255 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~108549-111255 DNA_ligase_ZBD PF03119.11 g6491.t1 - 0.044 13.4 1.2 6.4 6.5 0 3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:143117-143428 Augustus predicted protein sequence Tomato scaffold375_contigs=9~143117-143428 ATHILA PF03078.10 g33807.t1 - 3.2E-009 35.9 0.1 3.2E-009 35.9 0.1 1.8 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:78029-79496 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~78029-79496 Vma12 PF11712.3 g47395.t1 - 0.57 9.8 3.2 0.74 9.5 2.2 1.3 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:375981-376648 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~375981-376648 bZIP_1 PF00170.16 g74145.t1 - 0.1 12.5 1.2 0.26 11.2 0.6 1.8 2 0 0 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:87134-87502 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~87134-87502 PQ-loop PF04193.9 g33517.t1 - 0.032 13.7 0.5 2.4 7.7 0 2.3 2 0 0 2 2 2 0 PQ loop repeat | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:95277-95740 Augustus predicted protein sequence Tomato scaffold1132_contigs=4~95277-95740 zf-CCHC PF00098.18 g62470.t1 - 0.0000031 26.8 6.8 0.0000056 26 4.7 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:236444-236789 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~236444-236789 Neuropep_like PF15161.1 g28735.t1 - 0.016 14.6 0.2 0.11 11.9 0.1 2.1 1 1 1 2 2 2 0 Neuropeptide-like | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:125155-126107 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~125155-126107 QLQ PF08880.6 g82662.t1 - 0.72 9.3 4.4 0.95 8.9 0.1 2.7 1 1 1 2 2 2 0 QLQ | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:9396-10006 Augustus predicted protein sequence Tomato scaffold2747_contigs=3~9396-10006 MHCassoc_trimer PF08831.5 g10713.t1 - 0.034 13.9 0.5 0.062 13.1 0.3 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:339022-339348 Augustus predicted protein sequence Tomato scaffold503_contigs=7~339022-339348 Microvir_lysis PF04517.7 g71709.t1 - 1.8 8.3 4.9 4.3 7.1 0.7 2.5 2 1 0 2 2 2 0 Microvirus lysis protein (E), C terminus | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:188325-188609 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~188325-188609 DUF1117 PF06547.7 g5925.t1 - 0.17 11.9 1.2 19 5.4 0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1117) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:140829-141092 Augustus predicted protein sequence Tomato scaffold344_contigs=14~140829-141092 DinI PF06183.8 g11361.t1 - 0.00089 19.2 0.1 1.7 8.7 0 2.3 2 0 0 2 2 2 2 DinI-like family | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:390857-391377 Augustus predicted protein sequence Tomato scaffold523_contigs=15~390857-391377 CaM-KIIN PF15170.1 g87067.t1 - 0.094 12.7 1.4 10 6.2 0 2.7 1 1 2 3 3 3 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold2930_contigs=1, transcript_loc=scaffold2930_contigs=1:11125-11376 Augustus predicted protein sequence Tomato scaffold2930_contigs=1~11125-11376 DUF1509 PF07420.6 g36026.t1 - 0.37 10 3.5 0.37 10 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:139832-140146 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~139832-140146 CbiN PF02553.10 g32587.t1 - 0.013 15.5 0 0.024 14.6 0 1.5 1 0 0 1 1 1 0 Cobalt transport protein component CbiN | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:378227-378978 Augustus predicted protein sequence Tomato scaffold1107_contigs=16~378227-378978 ATHILA PF03078.10 g54597.t1 - 0.000000001 37.6 0 0.0000017 26.9 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:138868-139302 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~138868-139302 AAA_13 PF13166.1 g69893.t1 - 0.0056 15.2 4.9 0.007 14.8 3.4 1.1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:26774-27689 Augustus predicted protein sequence Tomato scaffold2312_contigs=19~26774-27689 CUT PF02376.10 g48405.t1 - 0.063 13 0 0.083 12.7 0 1.1 1 0 0 1 1 1 0 CUT domain | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:240657-240935 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~240657-240935 Dec-1 PF04624.9 g60854.t1 - 0.026 14.1 0.2 0.041 13.4 0.2 1.2 1 0 0 1 1 1 0 Dec-1 repeat | Ref_seq=scaffold1960_contigs=6, transcript_loc=scaffold1960_contigs=6:34937-35917 Augustus predicted protein sequence Tomato scaffold1960_contigs=6~34937-35917 Retrotrans_gag PF03732.12 g18094.t1 - 0.022 14.7 1.7 0.05 13.6 0.2 2.1 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:401590-402228 Augustus predicted protein sequence Tomato scaffold720_contigs=9~401590-402228 AlgF PF11182.3 g78249.t1 - 0.041 13.5 0.2 0.052 13.2 0.1 1.1 1 0 0 1 1 1 0 Alginate O-acetyl transferase AlgF | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:658480-658791 Augustus predicted protein sequence Tomato scaffold2667_contigs=25~658480-658791 Radial_spoke_3 PF06098.6 g47597.t1 - 0.062 12.2 0.6 0.073 12 0.4 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:711389-711727 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~711389-711727 APG9 PF04109.11 g73608.t1 - 0.14 11 0 0.22 10.4 0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg9 | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:281544-283098 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~281544-283098 T_Ag_DNA_bind PF02217.11 g57282.t1 - 0.036 14.4 0.2 0.051 13.9 0.1 1.4 1 1 0 1 1 1 0 Origin of replication binding protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:37561-37854 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~37561-37854 HTH_40 PF14493.1 g85708.t1 - 0.0038 17.4 0.1 0.0041 17.3 0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:32670-33004 Augustus predicted protein sequence Tomato scaffold2815_contigs=1~32670-33004 L31 PF09784.4 g86953.t1 - 0.038 14 0.7 0.068 13.2 0.5 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L31 | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:8084-10985 Augustus predicted protein sequence Tomato scaffold2915_contigs=1~8084-10985 DUF411 PF04214.8 g37771.t1 - 0.3 10.5 3 28 4.3 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function, DUF | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:277446-278243 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~277446-278243 Filaggrin PF03516.8 g46133.t1 - 8.2 6.9 22.8 3.6 8 9.3 2.4 2 0 0 2 2 2 0 Filaggrin | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:104901-105474 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~104901-105474 Stathmin PF00836.14 g4804.t1 - 2.2 7.9 7 0.58 9.7 0.6 2 1 1 1 2 2 2 0 Stathmin family | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:91057-91566 Augustus predicted protein sequence Tomato scaffold308_contigs=4~91057-91566 Vesiculo_matrix PF06326.7 g913.t1 - 0.041 13.3 0 0.063 12.7 0 1.2 1 0 0 1 1 1 0 Vesiculovirus matrix protein | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:53492-54645 Augustus predicted protein sequence Tomato scaffold180_contigs=3~53492-54645 Toprim_C_rpt PF13368.1 g63356.t1 - 7.2 7.1 8 0.95 9.9 0.8 2.1 2 0 0 2 2 2 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:403551-403823 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~403551-403823 Apo-CIII PF05778.7 g12549.t1 - 0.013 14.9 0.1 0.02 14.2 0 1.4 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:232978-234179 Augustus predicted protein sequence Tomato scaffold556_contigs=11~232978-234179 NPV_P10 PF05531.7 g86182.t1 - 0.011 15.9 0 0.11 12.6 0 2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:51023-52256 Augustus predicted protein sequence Tomato scaffold2841_contigs=1~51023-52256 DUF3464 PF11947.3 g68087.t1 - 0.13 11.7 0.4 0.28 10.6 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:372154-373367 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~372154-373367 Endotoxin_M PF00555.14 g13098.t1 - 0.063 13.1 0.1 0.075 12.8 0.1 1.2 1 0 0 1 1 1 0 delta endotoxin | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:288830-289126 Augustus predicted protein sequence Tomato scaffold568_contigs=22~288830-289126 DUF4094 PF13334.1 g13970.t1 - 0.053 13.9 4.7 0.097 13 3.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:89953-90712 Augustus predicted protein sequence Tomato scaffold583_contigs=2~89953-90712 DUF2611 PF11022.3 g35881.t1 - 3.8 7.6 5.2 2.5 8.2 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2611) | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:99043-100326 Augustus predicted protein sequence Tomato scaffold1184_contigs=2~99043-100326 NAM-associated PF14303.1 g43202.t1 - 0.014 15.7 2.1 0.017 15.4 1.4 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:75442-75708 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~75442-75708 zf-Mss51 PF13824.1 g79176.t1 - 0.44 10.4 3.1 0.67 9.8 2.1 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:175109-175540 Augustus predicted protein sequence Tomato scaffold2685_contigs=11~175109-175540 Pox_Ag35 PF03286.9 g55402.t1 - 0.029 13.9 7.9 0.031 13.7 5.5 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:86393-86749 Augustus predicted protein sequence Tomato scaffold1743_contigs=11~86393-86749 VIT1 PF01988.14 g11892.t1 - 0.058 12.8 0 0.061 12.7 0 1.1 1 0 0 1 1 1 0 VIT family | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:195242-195490 Augustus predicted protein sequence Tomato scaffold530_contigs=12~195242-195490 Herpes_UL14 PF03580.9 g19760.t1 - 0.15 11.8 2.1 0.18 11.5 1.3 1.3 1 1 0 1 1 1 0 Herpesvirus UL14-like protein | Ref_seq=scaffold758_contigs=7, transcript_loc=scaffold758_contigs=7:79873-80855 Augustus predicted protein sequence Tomato scaffold758_contigs=7~79873-80855 Glyoxal_oxid_N PF07250.6 g80245.t1 - 0.05 12.6 0.1 0.091 11.8 0 1.4 2 0 0 2 2 2 0 Glyoxal oxidase N-terminus | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:863566-864115 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~863566-864115 Herpes_U30 PF04523.8 g11278.t1 - 0.14 9.5 0.5 0.15 9.5 0.3 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:15837-16067 Augustus predicted protein sequence Tomato scaffold523_contigs=15~15837-16067 Fib_alpha PF08702.5 g42595.t1 - 0.11 12.6 0.8 0.13 12.3 0.5 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family | Ref_seq=scaffold1363_contigs=4, transcript_loc=scaffold1363_contigs=4:40006-40344 Augustus predicted protein sequence Tomato scaffold1363_contigs=4~40006-40344 ATHILA PF03078.10 g60253.t1 - 0.000079 21.4 0.5 0.00023 19.8 0.3 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:56729-57307 Augustus predicted protein sequence Tomato scaffold1945_contigs=4~56729-57307 Prefoldin PF02996.12 g76934.t1 - 0.03 13.9 1.4 0.048 13.3 1 1.3 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:7467-7802 Augustus predicted protein sequence Tomato scaffold2643_contigs=16~7467-7802 RVP_2 PF08284.6 g38638.t1 - 0.0024 17.8 0.4 0.026 14.4 0.2 2.2 1 1 1 2 2 2 2 Retroviral aspartyl protease | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:149984-151672 Augustus predicted protein sequence Tomato scaffold1248_contigs=3~149984-151672 Sec3-PIP2_bind PF15277.1 g33549.t1 - 0.076 12.8 0 0.22 11.3 0 1.8 2 0 0 2 2 2 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:101777-103101 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~101777-103101 zf-UBP PF02148.14 g55969.t1 - 2 8.5 7.9 3.4 7.8 5.5 1.7 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:146276-146569 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~146276-146569 FANCAA PF15146.1 g79887.t1 - 0.13 11.1 0 0.16 10.8 0 1.1 1 0 0 1 1 1 0 Fanconi anemia-associated | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:153255-153578 Augustus predicted protein sequence Tomato scaffold2703_contigs=7~153255-153578 DUF915 PF06028.6 g64465.t1 - 0.049 12.7 0 0.055 12.5 0 1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:5698-5925 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~5698-5925 DUF4322 PF14210.1 g69468.t1 - 0.14 11.6 0 0.23 10.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4322) | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:68105-69056 Augustus predicted protein sequence Tomato scaffold2287_contigs=19~68105-69056 NPV_P10 PF05531.7 g75901.t1 - 0.0033 17.6 1 0.14 12.4 0.3 2.1 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:232882-233971 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~232882-233971 YaaC PF14175.1 g8766.t1 - 0.022 13.7 0.1 0.026 13.5 0.1 1.1 1 0 0 1 1 1 0 YaaC-like Protein | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:58021-58404 Augustus predicted protein sequence Tomato scaffold436_contigs=4~58021-58404 TPR_MLP1_2 PF07926.7 g58105.t1 - 0.4 10.4 5.7 0.63 9.7 4 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:18047-18797 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~18047-18797 PsbP PF01789.11 g31070.t1 - 0.12 11.8 0 0.21 11 0 1.4 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:80245-81192 Augustus predicted protein sequence Tomato scaffold1055_contigs=9~80245-81192 DUF4200 PF13863.1 g71767.t1 - 0.0037 17.1 0.8 0.0037 17.1 0.5 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4200) | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:188469-188771 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~188469-188771 Lzipper-MIP1 PF14389.1 g16438.t1 - 0.026 14.6 0.9 0.16 12.1 0.1 2 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:100637-101289 Augustus predicted protein sequence Tomato scaffold671_contigs=7~100637-101289 ACCA PF03255.9 g84778.t1 - 0.057 12.9 0.3 0.14 11.7 0.2 1.6 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:107595-110022 Augustus predicted protein sequence Tomato scaffold2779_contigs=1~107595-110022 zf-CCHC PF00098.18 g46829.t1 - 0.043 13.7 5.3 0.069 13.1 3.7 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:232472-232726 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~232472-232726 DUF4584 PF15223.1 g52245.t1 - 0.73 9 5 0.59 9.3 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4584) | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:20005-20538 Augustus predicted protein sequence Tomato scaffold1634_contigs=13~20005-20538 NESP55 PF06390.7 g37405.t1 - 0.099 12 2.9 0.12 11.6 2 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:146063-146419 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~146063-146419 DUF2422 PF10337.4 g7359.t1 - 0.057 12.2 0.9 0.058 12.1 0.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:5971-6204 Augustus predicted protein sequence Tomato scaffold395_contigs=7~5971-6204 IFP_35_N PF07334.8 g17592.t1 - 0.032 14.1 0.4 0.071 13 0.3 1.6 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:388465-388779 Augustus predicted protein sequence Tomato scaffold708_contigs=18~388465-388779 Shisa PF13908.1 g17938.t1 - 0.034 14.3 0.1 0.04 14 0.1 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:199311-200080 Augustus predicted protein sequence Tomato scaffold717_contigs=7~199311-200080 DUF2341 PF10102.4 g46999.t1 - 0.12 12.4 0 0.28 11.3 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2341) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:56936-59431 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~56936-59431 Pol_alpha_B_N PF08418.5 g40001.t1 - 0.089 12.3 0.1 0.091 12.2 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:75017-75385 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~75017-75385 Polyketide_cyc2 PF10604.4 g41538.t1 - 0.076 13.1 0 0.12 12.5 0 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:51256-57556 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~51256-57556 ODC_AZ PF02100.12 g16165.t1 - 0.034 13.6 0 5.9 6.4 0 2.1 2 0 0 2 2 2 0 Ornithine decarboxylase antizyme | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:27527-28040 Augustus predicted protein sequence Tomato scaffold656_contigs=9~27527-28040 NACHT PF05729.7 g39316.t1 - 0.052 13.2 0 0.067 12.8 0 1.3 1 0 0 1 1 1 0 NACHT domain | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:400815-404047 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~400815-404047 Prog_receptor PF02161.10 g10492.t1 - 0.11 11.3 1.4 0.14 10.9 0.9 1.1 1 0 0 1 1 1 0 Progesterone receptor | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:402668-403108 Augustus predicted protein sequence Tomato scaffold498_contigs=12~402668-403108 MRI PF15325.1 g60583.t1 - 4.5 8.2 8.3 5.4 8 5.7 1.1 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:3827-4594 Augustus predicted protein sequence Tomato scaffold1956_contigs=5~3827-4594 Ribosomal_S20p PF01649.13 g56512.t1 - 0.024 14.9 0.3 0.042 14.2 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein S20 | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:71286-71603 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~71286-71603 Antirestrict PF03230.8 g35192.t1 - 0.094 12.7 0 0.19 11.7 0 1.5 1 0 0 1 1 1 0 Antirestriction protein | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:594167-596179 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~594167-596179 DICT PF10069.4 g71869.t1 - 0.063 12.8 0 0.13 11.8 0 1.5 2 0 0 2 2 2 0 Sensory domain found in DIguanylate Cyclases & Two-component systems | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:115311-115721 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~115311-115721 DUF3653 PF12375.3 g80240.t1 - 8.7 6.6 7.1 130 2.8 4.9 2.1 1 1 0 1 1 1 0 Phage protein | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:846031-846372 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~846031-846372 UBN2 PF14223.1 g54317.t1 - 0.00081 19.1 0.1 0.002 17.8 0 1.7 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:177695-178237 Augustus predicted protein sequence Tomato scaffold1719_contigs=7~177695-178237 HpaP PF09483.5 g2355.t1 - 1.2 9 8.7 0.34 10.8 3.3 1.8 1 1 1 2 2 2 0 Type III secretion protein (HpaP) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:52551-53266 Augustus predicted protein sequence Tomato scaffold235_contigs=2~52551-53266 Tim54 PF11711.3 g77375.t1 - 0.58 8.7 2.8 0.73 8.3 1.9 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:155970-156877 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~155970-156877 Hepatitis_core PF00906.15 g15232.t1 - 1.7 8.3 4.9 2.7 7.6 3.4 1.3 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:67045-67698 Augustus predicted protein sequence Tomato scaffold623_contigs=13~67045-67698 Adeno_PV PF03910.8 g13202.t1 - 2.6 7 6.2 3.1 6.7 4.3 1 1 0 0 1 1 1 0 Adenovirus minor core protein PV | Ref_seq=scaffold569_contigs=9, transcript_loc=scaffold569_contigs=9:149656-149961 Augustus predicted protein sequence Tomato scaffold569_contigs=9~149656-149961 PMD PF10536.4 g21212.t1 - 5.4E-009 35.5 0.1 7.2E-009 35.1 0.1 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:120384-121187 Augustus predicted protein sequence Tomato scaffold795_contigs=8~120384-121187 DUF4290 PF14123.1 g27604.t1 - 0.0033 16.6 0.1 0.0044 16.2 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4290) | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:41357-41665 Augustus predicted protein sequence Tomato scaffold982_contigs=2~41357-41665 DUF1985 PF09331.6 g56940.t1 - 0.0071 16.1 0 0.01 15.6 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:54293-55503 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~54293-55503 Myb_DNA-bind_4 PF13837.1 g1160.t1 - 0.00053 20 4 0.0008 19.4 2.8 1.2 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:16274-18724 Augustus predicted protein sequence Tomato scaffold193_contigs=2~16274-18724 DUF4167 PF13763.1 g38389.t1 - 0.078 13 0 0.13 12.3 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) | Ref_seq=scaffold1242_contigs=5, transcript_loc=scaffold1242_contigs=5:81465-81848 Augustus predicted protein sequence Tomato scaffold1242_contigs=5~81465-81848 Phage_integrase PF00589.17 g87467.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:1363-1707 Augustus predicted protein sequence Tomato scaffold3123_contigs=1~1363-1707 TT_ORF2a PF08197.6 g40400.t1 - 0.22 11.3 1 0.4 10.4 0.6 1.5 1 1 0 1 1 1 0 pORF2a truncated protein | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:62570-63337 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~62570-63337 RVT_3 PF13456.1 g10096.t1 - 0.0001 21.9 0 0.00039 20.1 0 1.8 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold484_contigs=2, transcript_loc=scaffold484_contigs=2:4732-5019 Augustus predicted protein sequence Tomato scaffold484_contigs=2~4732-5019 Ipi1_N PF12333.3 g16315.t1 - 0.026 14.4 0 0.046 13.6 0 1.5 1 0 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:147648-148259 Augustus predicted protein sequence Tomato scaffold668_contigs=10~147648-148259 Herpeto_peptide PF14409.1 g36305.t1 - 0.00071 19.2 0.1 1.8 8.3 0 2.5 2 0 0 2 2 2 2 Ribosomally synthesized peptide in Herpetosiphon | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:48318-49046 Augustus predicted protein sequence Tomato scaffold1190_contigs=29~48318-49046 Radial_spoke_3 PF06098.6 g11203.t1 - 0.0083 15.1 3.5 0.01 14.8 2.4 1.1 1 0 0 1 1 1 1 Radial spoke protein 3 | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:64520-67554 Augustus predicted protein sequence Tomato scaffold519_contigs=1~64520-67554 DUF3245 PF11595.3 g27493.t1 - 0.0024 18.1 0.3 0.003 17.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:276268-276954 Augustus predicted protein sequence Tomato scaffold980_contigs=13~276268-276954 DBC1 PF14443.1 g65820.t1 - 0.14 11.6 0.4 0.26 10.7 0 1.6 1 1 1 2 2 2 0 DBC1 | Ref_seq=scaffold2141_contigs=2, transcript_loc=scaffold2141_contigs=2:36560-36805 Augustus predicted protein sequence Tomato scaffold2141_contigs=2~36560-36805 GST_C_2 PF13410.1 g21942.t1 - 0.096 12.5 0 0.12 12.2 0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:316038-316322 Augustus predicted protein sequence Tomato scaffold817_contigs=11~316038-316322 DUF591 PF04569.9 g74518.t1 - 0.25 11.4 2.5 0.46 10.5 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold2559_contigs=11, transcript_loc=scaffold2559_contigs=11:32517-33404 Augustus predicted protein sequence Tomato scaffold2559_contigs=11~32517-33404 GalP_UDP_transf PF01087.17 g38231.t1 - 0.096 12.7 0 0.096 12.7 0 1.2 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, N-terminal domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:690954-691250 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~690954-691250 PSRT PF07636.6 g77141.t1 - 0.25 10.8 2.3 0.37 10.3 1.6 1.3 1 0 0 1 1 1 0 PSRT | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:120056-120262 Augustus predicted protein sequence Tomato scaffold2650_contigs=9~120056-120262 Atg14 PF10186.4 g79448.t1 - 0.079 11.8 0.1 0.086 11.7 0.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:109667-112365 Augustus predicted protein sequence Tomato scaffold2695_contigs=11~109667-112365 DUF4182 PF13790.1 g68428.t1 - 0.056 13.2 0.3 13 5.6 0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:167025-167468 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~167025-167468 Glyco_hydro_39 PF01229.12 g8658.t1 - 0.07 11.5 3.4 0.08 11.3 2.4 1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:385660-385947 Augustus predicted protein sequence Tomato scaffold429_contigs=9~385660-385947 DUF722 PF05263.6 g65839.t1 - 0.1 12.6 2.2 0.14 12.2 0.2 2 1 1 2 3 3 3 0 Protein of unknown function (DUF722) | Ref_seq=scaffold2143_contigs=4, transcript_loc=scaffold2143_contigs=4:56914-57708 Augustus predicted protein sequence Tomato scaffold2143_contigs=4~56914-57708 Cep57_MT_bd PF06657.8 g24956.t1 - 0.15 12 5.2 1.8 8.5 0.7 2.1 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:64510-64719 Augustus predicted protein sequence Tomato scaffold907_contigs=7~64510-64719 DUF2701 PF10857.3 g18351.t1 - 3.3 7.5 5.7 33 4.3 2.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2701) | Ref_seq=scaffold722_contigs=14, transcript_loc=scaffold722_contigs=14:301424-304318 Augustus predicted protein sequence Tomato scaffold722_contigs=14~301424-304318 GET2 PF08690.5 g50879.t1 - 0.12 11.5 0.2 0.14 11.4 0.2 1 1 0 0 1 1 1 0 GET complex subunit GET2 | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:98675-98938 Augustus predicted protein sequence Tomato scaffold1576_contigs=4~98675-98938 Flavi_glycoprot PF00869.15 g7979.t1 - 0.11 11.5 0.4 0.12 11.3 0.3 1.1 1 0 0 1 1 1 0 Flavivirus glycoprotein, central and dimerisation domains | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:98307-98693 Augustus predicted protein sequence Tomato scaffold413_contigs=6~98307-98693 UBN2 PF14223.1 g84574.t1 - 0.0003 20.5 4.1 0.00037 20.2 0.1 2.2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:104513-105943 Augustus predicted protein sequence Tomato scaffold2773_contigs=1~104513-105943 RBM1CTR PF08081.6 g23848.t1 - 0.044 13.5 4.4 0.14 11.9 3.1 1.8 1 0 0 1 1 1 0 RBM1CTR (NUC064) family | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:27079-28328 Augustus predicted protein sequence Tomato scaffold871_contigs=9~27079-28328 Herpes_capsid PF06112.6 g56371.t1 - 0.32 11 2.1 0.37 10.8 1.4 1.1 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:108691-109212 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~108691-109212 DUF3052 PF11253.3 g25284.t1 - 0.02 14.4 0.9 0.041 13.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3052) | Ref_seq=scaffold927_contigs=11, transcript_loc=scaffold927_contigs=11:56621-57730 Augustus predicted protein sequence Tomato scaffold927_contigs=11~56621-57730 DDHD PF02862.12 g14017.t1 - 0.0041 16.9 9.6 0.0043 16.8 6.7 1 1 0 0 1 1 1 1 DDHD domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:215226-217169 Augustus predicted protein sequence Tomato scaffold583_contigs=2~215226-217169 UBN2 PF14223.1 g28179.t1 - 0.058 13.1 0 0.15 11.8 0 1.7 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:227741-228034 Augustus predicted protein sequence Tomato scaffold992_contigs=3~227741-228034 DUF2161 PF09929.4 g15387.t1 - 0.071 13 0.1 0.093 12.6 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:308477-308719 Augustus predicted protein sequence Tomato scaffold624_contigs=9~308477-308719 LTXXQ PF07813.7 g37145.t1 - 0.1 13 2.2 0.16 12.4 1.5 1.2 1 0 0 1 1 1 0 LTXXQ motif family protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:468669-469408 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~468669-469408 LEAP-2 PF07359.6 g3185.t1 - 0.081 12.5 0 0.098 12.3 0 1.2 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold263_contigs=4, transcript_loc=scaffold263_contigs=4:57185-57599 Augustus predicted protein sequence Tomato scaffold263_contigs=4~57185-57599 SPG48 PF14764.1 g46721.t1 - 0.01 14.3 0.1 1.1 7.6 0 2 2 0 0 2 2 2 0 AP-5 complex subunit, vesicle trafficking | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:49115-49606 Augustus predicted protein sequence Tomato scaffold1486_contigs=6~49115-49606 R3H PF01424.17 g44548.t1 - 0.027 14.1 0.1 0.064 12.9 0 1.6 1 0 0 1 1 1 0 R3H domain | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:155026-155397 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~155026-155397 Period_C PF12114.3 g21036.t1 - 4.5 6.8 7 5.3 6.6 4.8 1 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold787_contigs=2, transcript_loc=scaffold787_contigs=2:1-992 Augustus predicted protein sequence Tomato scaffold787_contigs=2~1-992 RVT_3 PF13456.1 g86244.t1 - 0.000017 24.5 0 0.000022 24.1 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:1-1667 Augustus predicted protein sequence Tomato scaffold2846_contigs=1~1-1667 DUF2360 PF10152.4 g60153.t1 - 0.17 12.1 4.4 0.22 11.7 3.1 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:167223-169673 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~167223-169673 NIPSNAP PF07978.8 g70628.t1 - 0.0053 16.7 0 0.0072 16.2 0 1.2 1 0 0 1 1 1 1 NIPSNAP | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:249513-249953 Augustus predicted protein sequence Tomato scaffold2343_contigs=14~249513-249953 Ets PF00178.17 g13809.t1 - 0.2 11.7 0.7 1.9 8.7 0.1 2.1 2 0 0 2 2 2 0 Ets-domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:256513-259806 Augustus predicted protein sequence Tomato scaffold582_contigs=8~256513-259806 AAA_18 PF13238.1 g37740.t1 - 0.0024 18.1 0.2 0.0091 16.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:141303-141701 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~141303-141701 DBC1 PF14443.1 g20066.t1 - 0.14 11.6 0.2 0.18 11.3 0.1 1.4 1 1 0 1 1 1 0 DBC1 | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:182271-182525 Augustus predicted protein sequence Tomato scaffold767_contigs=5~182271-182525 Crust_neurohorm PF01147.12 g63873.t1 - 0.064 12.5 1.7 1.3 8.4 0 2.8 2 0 0 2 2 2 0 Crustacean CHH/MIH/GIH neurohormone family | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:61854-65002 Augustus predicted protein sequence Tomato scaffold2046_contigs=5~61854-65002 DUF2285 PF10074.4 g68296.t1 - 0.0055 17 0.6 0.0099 16.2 0.4 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2285) | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:181560-182255 Augustus predicted protein sequence Tomato scaffold2209_contigs=9~181560-182255 DUF3774 PF12609.3 g86453.t1 - 0.0018 19 0.3 0.0024 18.7 0.2 1.4 1 1 0 1 1 1 1 Wound-induced protein | Ref_seq=scaffold2862_contigs=1, transcript_loc=scaffold2862_contigs=1:46271-46489 Augustus predicted protein sequence Tomato scaffold2862_contigs=1~46271-46489 RVT_3 PF13456.1 g49276.t1 - 0.00053 19.7 0 0.00073 19.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:109634-109960 Augustus predicted protein sequence Tomato scaffold1531_contigs=12~109634-109960 Rbsn PF11464.3 g76767.t1 - 0.02 14.4 0.5 0.036 13.6 0.3 1.4 1 0 0 1 1 1 0 Rabenosyn Rab binding domain | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:617744-618028 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~617744-618028 F_bP_aldolase PF01116.15 g10342.t1 - 0.15 11.1 0.4 2 7.4 0 2 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:304841-305679 Augustus predicted protein sequence Tomato scaffold494_contigs=9~304841-305679 CDC45 PF02724.9 g502.t1 - 0.85 7.5 6.4 0.97 7.3 4.4 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:2429-3997 Augustus predicted protein sequence Tomato scaffold51_contigs=2~2429-3997 GRIM-19 PF06212.7 g37167.t1 - 0.077 12.6 0.2 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 GRIM-19 protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:560543-561548 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~560543-561548 FAM110_C PF14160.1 g73655.t1 - 0.0002 22.2 0.3 0.66 10.9 0 2.2 1 1 1 2 2 2 2 Centrosome-associated C terminus | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:2309-3317 Augustus predicted protein sequence Tomato scaffold2491_contigs=9~2309-3317 DUF4207 PF13904.1 g26505.t1 - 0.0017 17.7 3.8 0.002 17.5 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4207) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:264630-266530 Augustus predicted protein sequence Tomato scaffold949_contigs=2~264630-266530 Chordopox_A33R PF05966.7 g80795.t1 - 0.11 11.2 0 0.16 10.6 0 1.3 1 0 0 1 1 1 0 Chordopoxvirus A33R protein | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:389889-391778 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~389889-391778 DUF3987 PF13148.1 g40615.t1 - 0.072 11.6 2.4 0.098 11.1 0.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:6648-10057 Augustus predicted protein sequence Tomato scaffold1304_contigs=4~6648-10057 Spore_GerQ PF09671.5 g23962.t1 - 0.15 11.7 0 0.21 11.2 0 1.3 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:266524-266979 Augustus predicted protein sequence Tomato scaffold874_contigs=5~266524-266979 Peptidase_M15_2 PF05951.8 g79781.t1 - 0.15 11.4 0 0.18 11.2 0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:596203-596820 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~596203-596820 ATHILA PF03078.10 g20154.t1 - 0.000048 22.1 0 0.000054 21.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:92455-92721 Augustus predicted protein sequence Tomato scaffold768_contigs=4~92455-92721 DUF1347 PF07079.6 g22512.t1 - 0.073 11.2 0.1 0.089 10.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:175928-176383 Augustus predicted protein sequence Tomato scaffold831_contigs=10~175928-176383 WHIM1 PF15612.1 g87037.t1 - 0.021 14.7 1.3 7.8 6.6 0.1 2.5 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 1 | Ref_seq=scaffold2926_contigs=1, transcript_loc=scaffold2926_contigs=1:6264-7082 Augustus predicted protein sequence Tomato scaffold2926_contigs=1~6264-7082 Med9 PF07544.8 g37447.t1 - 0.0038 16.9 0.4 0.0058 16.3 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:278702-279120 Augustus predicted protein sequence Tomato scaffold1218_contigs=3~278702-279120 Myc_N PF01056.13 g68077.t1 - 0.031 13.4 1.7 0.033 13.3 1.2 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:350472-350720 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~350472-350720 DASH_Dad2 PF08654.5 g73369.t1 - 0.00016 21.6 0 0.00019 21.3 0 1.1 1 0 0 1 1 1 1 DASH complex subunit Dad2 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:342533-342769 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~342533-342769 DUF2127 PF09900.4 g72330.t1 - 0.1 12.6 0.1 0.12 12.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1109443-1109673 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1109443-1109673 Peptidase_S49_N PF08496.5 g77903.t1 - 1.9 8.2 5.4 2.8 7.7 3.8 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:796190-796975 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~796190-796975 BLVR PF06375.6 g11599.t1 - 0.00039 20.2 11.7 0.00054 19.8 8.1 1.3 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:40883-44507 Augustus predicted protein sequence Tomato scaffold528_contigs=4~40883-44507 Cation_ATPase_C PF00689.16 g3739.t1 - 0.021 14.3 5.7 0.018 14.5 3.4 1.3 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:363130-363579 Augustus predicted protein sequence Tomato scaffold280_contigs=12~363130-363579 Nucleoplasmin PF03066.10 g71395.t1 - 0.0052 16.3 7.8 0.0052 16.3 5.4 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:869717-870456 Augustus predicted protein sequence Tomato scaffold2367_contigs=57~869717-870456 DUF977 PF06163.6 g85703.t1 - 0.0097 15.6 0 0.014 15.1 0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:27007-27378 Augustus predicted protein sequence Tomato scaffold2815_contigs=1~27007-27378 Y1_Tnp PF01797.11 g28184.t1 - 0.088 12.6 0 0.23 11.3 0 1.7 1 1 0 1 1 1 0 Transposase IS200 like | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:1813-2316 Augustus predicted protein sequence Tomato scaffold993_contigs=5~1813-2316 TPD52 PF04201.10 g19584.t1 - 0.00033 20.4 0.3 0.0004 20.1 0.2 1.2 1 0 0 1 1 1 1 Tumour protein D52 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:107480-108003 Augustus predicted protein sequence Tomato scaffold756_contigs=8~107480-108003 MmlI PF09448.5 g62608.t1 - 0.13 12 0 0.17 11.6 0 1.3 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase | Ref_seq=scaffold1997_contigs=2, transcript_loc=scaffold1997_contigs=2:49267-49596 Augustus predicted protein sequence Tomato scaffold1997_contigs=2~49267-49596 DPM2 PF07297.7 g62508.t1 - 0.12 12.6 0 0.14 12.4 0 1.2 1 0 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:334267-335948 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~334267-335948 Spt5_N PF11942.3 g7393.t1 - 0.22 12.1 3.9 0.31 11.6 2.7 1.1 1 0 0 1 1 1 0 Spt5 transcription elongation factor, acidic N-terminal | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:168319-172226 Augustus predicted protein sequence Tomato scaffold395_contigs=7~168319-172226 Tropomyosin PF00261.15 g33189.t1 - 0.12 11.5 1.7 0.17 10.9 1.2 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:58083-58754 Augustus predicted protein sequence Tomato scaffold1116_contigs=2~58083-58754 ADC PF06314.6 g70891.t1 - 0.01 15.2 0 0.014 14.7 0 1.2 1 0 0 1 1 1 0 Acetoacetate decarboxylase (ADC) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:500403-500813 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~500403-500813 Leu_zip PF15294.1 g25546.t1 - 0.036 13.1 0 0.042 12.9 0 1.1 1 0 0 1 1 1 0 Leucine zipper | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:189458-193293 Augustus predicted protein sequence Tomato scaffold929_contigs=9~189458-193293 YlbE PF14003.1 g63801.t1 - 0.36 10.9 1.4 0.52 10.4 0.1 1.9 2 0 0 2 2 2 0 YlbE-like protein | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:222162-223741 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~222162-223741 DUF3122 PF11320.3 g42084.t1 - 0.079 12.8 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:430891-431277 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~430891-431277 DUF3643 PF12356.3 g17127.t1 - 0.15 11.3 0.1 0.17 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3643) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:255554-256585 Augustus predicted protein sequence Tomato scaffold694_contigs=2~255554-256585 Atrophin-1 PF03154.10 g8378.t1 - 0.0014 16.9 3.7 0.0015 16.8 2.6 1 1 0 0 1 1 1 1 Atrophin-1 family | Ref_seq=scaffold425_contigs=5, transcript_loc=scaffold425_contigs=5:43829-45811 Augustus predicted protein sequence Tomato scaffold425_contigs=5~43829-45811 Hanta_nucleocap PF00846.13 g28851.t1 - 0.12 11 0 0.16 10.6 0 1 1 0 0 1 1 1 0 Hantavirus nucleocapsid protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:548525-549222 Augustus predicted protein sequence Tomato scaffold1010_contigs=27~548525-549222 PMD PF10536.4 g61941.t1 - 0.00092 18.3 0 0.0024 16.9 0 1.6 1 1 1 2 2 2 1 Plant mobile domain | Ref_seq=scaffold1981_contigs=8, transcript_loc=scaffold1981_contigs=8:63115-64011 Augustus predicted protein sequence Tomato scaffold1981_contigs=8~63115-64011 Fer4_5 PF12801.2 g68789.t1 - 0.13 12 0.5 0.28 11 0.4 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain | Ref_seq=scaffold2227_contigs=6, transcript_loc=scaffold2227_contigs=6:41069-43051 Augustus predicted protein sequence Tomato scaffold2227_contigs=6~41069-43051 TRAP-gamma PF07074.7 g36818.t1 - 0.025 14 3.1 0.035 13.6 2.2 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:141826-142349 Augustus predicted protein sequence Tomato scaffold1209_contigs=7~141826-142349 EF-hand_like PF09279.6 g19081.t1 - 0.054 13.5 0.8 0.12 12.3 0.6 1.7 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:53957-58858 Augustus predicted protein sequence Tomato scaffold744_contigs=4~53957-58858 DUF2570 PF10828.3 g4110.t1 - 0.13 11.9 1.9 0.18 11.4 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:20230-20633 Augustus predicted protein sequence Tomato scaffold293_contigs=5~20230-20633 DUF2180 PF09947.4 g85976.t1 - 0.074 12.8 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) | Ref_seq=scaffold2830_contigs=1, transcript_loc=scaffold2830_contigs=1:36559-42578 Augustus predicted protein sequence Tomato scaffold2830_contigs=1~36559-42578 Dynamitin PF04912.9 g29734.t1 - 0.029 13.2 0 0.029 13.2 0 1 1 0 0 1 1 1 0 Dynamitin | Ref_seq=scaffold1032_contigs=3, transcript_loc=scaffold1032_contigs=3:86126-87850 Augustus predicted protein sequence Tomato scaffold1032_contigs=3~86126-87850 DUF2694 PF10904.3 g83544.t1 - 0.043 13.8 0.1 0.094 12.7 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:896653-897381 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~896653-897381 InaF-motif PF15018.1 g48811.t1 - 1.1 8.7 4.2 2.9 7.3 2.9 1.7 1 1 0 1 1 1 0 TRP-interacting helix | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:91814-92152 Augustus predicted protein sequence Tomato scaffold1507_contigs=2~91814-92152 zf-C4H2 PF10146.4 g74870.t1 - 0.27 11.2 3.7 8 6.4 1.2 2 1 1 1 2 2 2 0 Zinc finger-containing protein | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:12454-13458 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~12454-13458 MCPVI PF02993.9 g60822.t1 - 6 6.9 5.7 7.3 6.6 3.9 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:465990-466502 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~465990-466502 MHCassoc_trimer PF08831.5 g40253.t1 - 0.013 15.2 0.3 0.028 14.2 0.2 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:45693-46456 Augustus predicted protein sequence Tomato scaffold1297_contigs=3~45693-46456 Chorion_3 PF05387.6 g66804.t1 - 0.014 14.8 2 0.016 14.6 1.4 1.1 1 0 0 1 1 1 0 Chorion family 3 | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:79555-80540 Augustus predicted protein sequence Tomato scaffold2170_contigs=8~79555-80540 SEF14_adhesin PF06443.6 g56864.t1 - 0.066 12.8 0 0.077 12.6 0 1.1 1 0 0 1 1 1 0 SEF14-like adhesin | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:207917-208401 Augustus predicted protein sequence Tomato scaffold1821_contigs=10~207917-208401 ATHILA PF03078.10 g29667.t1 - 1.6E-010 40.1 0 0.00015 20.4 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:47465-48513 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~47465-48513 YscO PF07321.7 g54330.t1 - 0.0041 16.9 1.1 0.0069 16.2 0.7 1.3 1 0 0 1 1 1 1 Type III secretion protein YscO | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:12417-13574 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~12417-13574 LMSTEN PF07988.7 g71669.t1 - 0.042 13.1 0.3 0.081 12.2 0.2 1.5 1 0 0 1 1 1 0 LMSTEN motif | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:58417-59240 Augustus predicted protein sequence Tomato scaffold2372_contigs=2~58417-59240 EGF_alliinase PF04863.8 g67112.t1 - 0.062 13.2 4 0.48 10.4 0 2.7 3 0 0 3 3 3 0 Alliinase EGF-like domain | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:7972-13241 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~7972-13241 CD24 PF14984.1 g67046.t1 - 0.48 10.2 3.4 6 6.7 0.2 2.6 2 0 0 2 2 2 0 CD24 protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:612312-612659 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~612312-612659 IPP-2 PF04979.9 g1690.t1 - 0.084 13.1 0.4 0.13 12.4 0.3 1.4 1 0 0 1 1 1 0 Protein phosphatase inhibitor 2 (IPP-2) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:169995-170384 Augustus predicted protein sequence Tomato scaffold213_contigs=5~169995-170384 DUF908 PF06012.7 g71819.t1 - 0.011 15 1.4 0.018 14.3 1 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:87865-89778 Augustus predicted protein sequence Tomato scaffold2375_contigs=1~87865-89778 K-box PF01486.12 g36877.t1 - 0.00058 19.6 0.1 0.00089 19 0.1 1.3 1 0 0 1 1 1 1 K-box region | Ref_seq=scaffold1210_contigs=1, transcript_loc=scaffold1210_contigs=1:26095-29068 Augustus predicted protein sequence Tomato scaffold1210_contigs=1~26095-29068 Transposase_28 PF04195.7 g32153.t1 - 0.0082 15.4 0.2 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:596096-598385 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~596096-598385 Activator-TraM PF11657.3 g57272.t1 - 0.44 10 2.7 0.44 10 1.9 1.3 1 1 0 1 1 1 0 Transcriptional activator TraM | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:14824-15185 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~14824-15185 Leptin PF02024.10 g64821.t1 - 0.028 14 0.1 0.043 13.4 0.1 1.3 1 0 0 1 1 1 0 Leptin | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:18479-19072 Augustus predicted protein sequence Tomato scaffold2097_contigs=12~18479-19072 DUF4508 PF14969.1 g5498.t1 - 0.0085 16 0 0.013 15.4 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4508) | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:11913-12313 Augustus predicted protein sequence Tomato scaffold330_contigs=6~11913-12313 Phage_RpbA PF10789.4 g11675.t1 - 0.01 15.6 1.3 0.014 15.2 0.9 1.3 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:269736-270119 Augustus predicted protein sequence Tomato scaffold528_contigs=4~269736-270119 Acatn PF13000.2 g32113.t1 - 0.091 11.2 0 0.095 11.1 0 1.2 1 0 0 1 1 1 0 Acetyl-coenzyme A transporter 1 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:425467-425781 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~425467-425781 QLQ PF08880.6 g27951.t1 - 1 8.8 4.8 3.5 7.1 0.1 3.2 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold988_contigs=4, transcript_loc=scaffold988_contigs=4:66354-67873 Augustus predicted protein sequence Tomato scaffold988_contigs=4~66354-67873 NADH5_C PF06455.6 g37138.t1 - 0.018 14.4 0.7 19 4.5 0 3 2 1 1 3 3 3 0 NADH dehydrogenase subunit 5 C-terminus | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:423671-425733 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~423671-425733 Cortex-I_coil PF09304.5 g46518.t1 - 0.018 15.1 2.1 0.022 14.7 1.4 1.1 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:327107-327478 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~327107-327478 Transposase_28 PF04195.7 g68971.t1 - 0.032 13.5 0 0.054 12.7 0 1.4 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:32769-34503 Augustus predicted protein sequence Tomato scaffold2237_contigs=22~32769-34503 DUF1985 PF09331.6 g16702.t1 - 0.00032 20.5 0 0.00051 19.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:42672-45163 Augustus predicted protein sequence Tomato scaffold677_contigs=5~42672-45163 Hemopexin PF00045.14 g55008.t1 - 0.051 13.3 0.4 0.076 12.7 0.3 1.4 1 0 0 1 1 1 0 Hemopexin | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:307640-307888 Augustus predicted protein sequence Tomato scaffold1732_contigs=8~307640-307888 AphA_like PF14557.1 g12493.t1 - 0.13 11.7 0 0.14 11.7 0 1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:69303-69767 Augustus predicted protein sequence Tomato scaffold556_contigs=11~69303-69767 DUF1373 PF07117.6 g12558.t1 - 0.0038 16.9 0.2 0.0041 16.8 0.1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1373) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:257680-257937 Augustus predicted protein sequence Tomato scaffold556_contigs=11~257680-257937 CENP-T PF15511.1 g47072.t1 - 1.4 8 12.9 1.9 7.6 9 1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:352930-353598 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~352930-353598 MerR-DNA-bind PF09278.6 g40108.t1 - 0.11 12.9 0.1 0.15 12.4 0.1 1.2 1 0 0 1 1 1 0 MerR, DNA binding | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:151301-152908 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~151301-152908 DegS PF05384.6 g30410.t1 - 0.000062 22.2 0.3 0.000084 21.8 0.2 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:353469-356494 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~353469-356494 UBN2 PF14223.1 g77238.t1 - 0.02 14.6 0.8 0.033 13.9 0.5 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:57349-57816 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~57349-57816 PMD PF10536.4 g33272.t1 - 0.00000098 28 0.3 0.00052 19.1 0.1 2.9 1 1 2 3 3 3 2 Plant mobile domain | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:123680-127793 Augustus predicted protein sequence Tomato scaffold1126_contigs=23~123680-127793 N6_N4_Mtase PF01555.13 g85975.t1 - 0.085 12.3 0.1 0.088 12.2 0.1 1.1 1 0 0 1 1 1 0 DNA methylase | Ref_seq=scaffold2830_contigs=1, transcript_loc=scaffold2830_contigs=1:35062-35421 Augustus predicted protein sequence Tomato scaffold2830_contigs=1~35062-35421 DUF4283 PF14111.1 g43432.t1 - 0.00000044 29.1 0.1 0.00000053 28.8 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:49355-49708 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~49355-49708 Crl PF07417.7 g16445.t1 - 0.027 14.1 0 0.033 13.8 0 1.1 1 0 0 1 1 1 0 Transcriptional regulator Crl | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:127832-131673 Augustus predicted protein sequence Tomato scaffold671_contigs=7~127832-131673 ImpE PF07024.8 g7780.t1 - 0.13 12.2 0 0.17 11.8 0 1.2 1 0 0 1 1 1 0 ImpE protein | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:33975-34430 Augustus predicted protein sequence Tomato scaffold408_contigs=6~33975-34430 ATHILA PF03078.10 g38230.t1 - 0.00000031 29.3 0.1 0.00000035 29.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:688325-688582 Augustus predicted protein sequence Tomato scaffold1241_contigs=24~688325-688582 EPO_TPO PF00758.13 g30133.t1 - 0.11 12.1 0.1 0.17 11.4 0 1.3 1 1 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:113282-113503 Augustus predicted protein sequence Tomato scaffold1038_contigs=3~113282-113503 DUF3245 PF11595.3 g75269.t1 - 0.0086 16.3 1.9 0.01 16 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:14374-15975 Augustus predicted protein sequence Tomato scaffold2590_contigs=10~14374-15975 FtsH_ext PF06480.10 g11950.t1 - 0.026 14.7 0.1 0.055 13.6 0.1 1.4 1 0 0 1 1 1 0 FtsH Extracellular | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:15032-16488 Augustus predicted protein sequence Tomato scaffold534_contigs=3~15032-16488 VQ PF05678.9 g48160.t1 - 0.19 10.8 2.8 6.3 5.9 0.1 2.8 2 1 0 2 2 2 0 VQ motif | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:84315-84539 Augustus predicted protein sequence Tomato scaffold1501_contigs=1~84315-84539 DUF2360 PF10152.4 g6946.t1 - 0.042 14.1 2.6 0.059 13.6 1.8 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold385_contigs=8, transcript_loc=scaffold385_contigs=8:88326-89874 Augustus predicted protein sequence Tomato scaffold385_contigs=8~88326-89874 Tropomyosin_1 PF12718.2 g13631.t1 - 0.062 13.1 0.5 0.073 12.9 0.3 1.1 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:203925-204155 Augustus predicted protein sequence Tomato scaffold578_contigs=5~203925-204155 TGF_beta_GS PF08515.7 g1844.t1 - 0.2 11 1.8 0.34 10.2 1.2 1.4 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:1-143 Augustus predicted protein sequence Tomato scaffold218_contigs=4~1-143 zf-CCHC PF00098.18 g28964.t1 - 0.0012 18.6 3.2 0.0019 18 2.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:8521-8910 Augustus predicted protein sequence Tomato scaffold1011_contigs=17~8521-8910 Med2 PF11214.3 g83329.t1 - 0.03 14.3 2.7 0.045 13.7 1.8 1.3 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:84853-85413 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~84853-85413 Imm17 PF15591.1 g61690.t1 - 0.06 13.1 0 0.15 11.8 0 1.6 1 0 0 1 1 1 0 Immunity protein 17 | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:125079-131716 Augustus predicted protein sequence Tomato scaffold1973_contigs=23~125079-131716 DUF2684 PF10885.3 g23522.t1 - 0.055 13.3 0.1 0.097 12.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2684) | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:86168-86527 Augustus predicted protein sequence Tomato scaffold862_contigs=2~86168-86527 Agouti PF05039.7 g30713.t1 - 0.29 11.5 1.5 0.38 11.1 1 1.2 1 0 0 1 1 1 0 Agouti protein | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:139727-140268 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~139727-140268 DDDD PF10161.4 g55003.t1 - 4.5 6.9 5 7.3 6.2 3.4 1.6 1 1 1 2 2 2 0 Putative mitochondrial precursor protein | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:264922-265281 Augustus predicted protein sequence Tomato scaffold1732_contigs=8~264922-265281 DUF1682 PF07946.9 g16731.t1 - 0.0031 16.4 0.3 0.0032 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:1-472 Augustus predicted protein sequence Tomato scaffold679_contigs=3~1-472 ATHILA PF03078.10 g52422.t1 - 0.0016 17 0.3 0.0016 17 0.2 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:11563-12948 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~11563-12948 VLPT PF07122.6 g4287.t1 - 0.11 12.1 0.2 2.2 7.9 0 2.3 2 0 0 2 2 2 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:10184-10561 Augustus predicted protein sequence Tomato scaffold296_contigs=6~10184-10561 Pro_Al_protease PF02983.9 g39293.t1 - 0.015 15.2 0.1 7.2 6.6 0 2.3 2 0 0 2 2 2 0 Alpha-lytic protease prodomain | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:295323-298667 Augustus predicted protein sequence Tomato scaffold1267_contigs=12~295323-298667 APG6 PF04111.7 g79059.t1 - 0.00013 21.1 1.3 0.00019 20.5 0.9 1.3 1 0 0 1 1 1 1 Autophagy protein Apg6 | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:36590-38854 Augustus predicted protein sequence Tomato scaffold2684_contigs=8~36590-38854 DUF3454 PF11936.3 g21874.t1 - 0.28 11.4 1.2 0.4 10.9 0.1 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3454) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:130539-130856 Augustus predicted protein sequence Tomato scaffold817_contigs=11~130539-130856 SSB PF00436.20 g44609.t1 - 0.011 15.6 0 0.012 15.4 0 1.2 1 0 0 1 1 1 0 Single-strand binding protein family | Ref_seq=scaffold1434_contigs=2, transcript_loc=scaffold1434_contigs=2:8205-8542 Augustus predicted protein sequence Tomato scaffold1434_contigs=2~8205-8542 CD45 PF12567.3 g77324.t1 - 0.066 13 0.8 12 5.8 0.1 2.2 2 0 0 2 2 2 0 Leukocyte receptor CD45 | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:18580-19384 Augustus predicted protein sequence Tomato scaffold2656_contigs=23~18580-19384 IBV_3A PF03617.8 g83091.t1 - 0.082 12.6 0.3 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:165667-165957 Augustus predicted protein sequence Tomato scaffold2755_contigs=10~165667-165957 DUF1985 PF09331.6 g42644.t1 - 0.0075 16 0 0.014 15.2 0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1368_contigs=16, transcript_loc=scaffold1368_contigs=16:34063-35430 Augustus predicted protein sequence Tomato scaffold1368_contigs=16~34063-35430 LCE PF14672.1 g87538.t1 - 5 7.6 13.7 0.51 10.8 3.3 2.8 2 1 0 2 2 2 0 Late cornified envelope | Ref_seq=scaffold3265_contigs=1, transcript_loc=scaffold3265_contigs=1:1749-2600 Augustus predicted protein sequence Tomato scaffold3265_contigs=1~1749-2600 Bac_globin PF01152.16 g9148.t1 - 0.0046 16.9 0.2 4.7 7.2 0 2.5 2 0 0 2 2 2 2 Bacterial-like globin | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:98746-99738 Augustus predicted protein sequence Tomato scaffold448_contigs=2~98746-99738 Matrilin_ccoil PF10393.4 g39149.t1 - 0.048 13 0.3 0.096 12 0.2 1.6 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:105073-105396 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~105073-105396 DUF3073 PF11273.3 g624.t1 - 0.065 13.7 2.8 8.6 6.9 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:146707-147414 Augustus predicted protein sequence Tomato scaffold66_contigs=5~146707-147414 DUF4200 PF13863.1 g15360.t1 - 0.0024 17.8 8 0.0036 17.2 5.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:215284-215732 Augustus predicted protein sequence Tomato scaffold624_contigs=9~215284-215732 P33MONOX PF15302.1 g76518.t1 - 0.43 10.1 2.4 0.43 10.1 1.7 1.1 1 0 0 1 1 1 0 P33 mono-oxygenase | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:115805-116098 Augustus predicted protein sequence Tomato scaffold2632_contigs=8~115805-116098 NESP55 PF06390.7 g69215.t1 - 0.11 11.9 6.3 0.2 10.9 4.4 1.6 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:72893-73249 Augustus predicted protein sequence Tomato scaffold2263_contigs=12~72893-73249 DUF3778 PF12620.3 g4390.t1 - 0.0085 15.6 4.4 0.042 13.3 1 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF3778) | Ref_seq=scaffold299_contigs=2, transcript_loc=scaffold299_contigs=2:14526-14858 Augustus predicted protein sequence Tomato scaffold299_contigs=2~14526-14858 Myc_target_1 PF15179.1 g74825.t1 - 0.11 12 2.4 0.13 11.8 1.7 1.2 1 0 0 1 1 1 0 Myc target protein 1 | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:4994-5380 Augustus predicted protein sequence Tomato scaffold2571_contigs=16~4994-5380 DUF4219 PF13961.1 g7499.t1 - 0.00088 18.6 0 0.0014 18 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:59044-59361 Augustus predicted protein sequence Tomato scaffold403_contigs=6~59044-59361 HpaP PF09483.5 g26973.t1 - 0.081 12.8 3.7 0.1 12.5 2.6 1.2 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:59078-59671 Augustus predicted protein sequence Tomato scaffold965_contigs=10~59078-59671 SMN PF06003.7 g33758.t1 - 0.041 12.9 0.8 0.055 12.5 0.6 1.3 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:282906-283657 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~282906-283657 Chorion_2 PF03964.10 g37709.t1 - 3.2 8.3 6 2.8 8.5 0.7 2.1 2 0 0 2 2 2 0 Chorion family 2 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:18242-18783 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~18242-18783 HMG14_17 PF01101.13 g24584.t1 - 0.027 15.1 0.7 0.064 13.9 0.1 1.7 2 0 0 2 2 2 0 HMG14 and HMG17 | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:84-581 Augustus predicted protein sequence Tomato scaffold890_contigs=10~84-581 Exotox-A_cataly PF09009.5 g18383.t1 - 0.015 14.2 0 0.017 14 0 1.1 1 0 0 1 1 1 0 Exotoxin A catalytic | Ref_seq=scaffold722_contigs=14, transcript_loc=scaffold722_contigs=14:516750-517112 Augustus predicted protein sequence Tomato scaffold722_contigs=14~516750-517112 zf-CCHC PF00098.18 g3860.t1 - 0.00016 21.4 0.2 0.00035 20.3 0.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:350266-351189 Augustus predicted protein sequence Tomato scaffold281_contigs=6~350266-351189 Tim54 PF11711.3 g54690.t1 - 0.6 8.6 7.5 1.8 7 0.5 2.7 2 1 1 3 3 3 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:156318-158442 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~156318-158442 Abhydro_lipase PF04083.11 g28429.t1 - 0.044 13.1 0 0.062 12.6 0 1.4 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:9151-9543 Augustus predicted protein sequence Tomato scaffold1003_contigs=3~9151-9543 FYDLN_acid PF09538.5 g48596.t1 - 0.12 12.9 13.6 0.16 12.5 9.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:437021-437585 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~437021-437585 Colicin_C PF12106.3 g4812.t1 - 0.12 12 0.1 0.24 11 0.1 1.5 1 0 0 1 1 1 0 Colicin C terminal ribonuclease domain | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:106747-107088 Augustus predicted protein sequence Tomato scaffold308_contigs=4~106747-107088 DUF1854 PF08909.6 g15606.t1 - 0.08 12.5 0 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1854) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:109002-109656 Augustus predicted protein sequence Tomato scaffold635_contigs=5~109002-109656 DUF4404 PF14357.1 g83385.t1 - 0.014 15.7 0.3 0.017 15.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:306815-307852 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~306815-307852 Tropomyosin PF00261.15 g40485.t1 - 0.003 16.7 0.6 0.0037 16.3 0.4 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:74412-74897 Augustus predicted protein sequence Tomato scaffold1302_contigs=6~74412-74897 MTH865 PF07747.6 g15807.t1 - 0.057 13 0 0.076 12.6 0 1.2 1 0 0 1 1 1 0 MTH865-like family | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:7936-8178 Augustus predicted protein sequence Tomato scaffold645_contigs=7~7936-8178 Med2 PF11214.3 g29687.t1 - 0.34 10.9 3.2 0.59 10.1 2.2 1.3 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:113643-114341 Augustus predicted protein sequence Tomato scaffold1031_contigs=7~113643-114341 WXG100 PF06013.7 g3236.t1 - 0.76 9.8 5.7 5.2 7.1 2 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:127355-128255 Augustus predicted protein sequence Tomato scaffold264_contigs=10~127355-128255 Lipoprotein_3 PF00938.12 g45163.t1 - 0.12 12.1 0.1 0.19 11.5 0.1 1.2 1 0 0 1 1 1 0 Lipoprotein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:208514-208954 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~208514-208954 DC_STAMP PF07782.8 g86583.t1 - 0.025 14.2 1 0.042 13.4 0.2 1.7 1 1 1 2 2 2 0 DC-STAMP-like protein | Ref_seq=scaffold2874_contigs=1, transcript_loc=scaffold2874_contigs=1:30062-32992 Augustus predicted protein sequence Tomato scaffold2874_contigs=1~30062-32992 ATHILA PF03078.10 g61623.t1 - 0.0000019 26.7 0 0.0000042 25.6 0 1.5 1 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:26472-27427 Augustus predicted protein sequence Tomato scaffold1972_contigs=6~26472-27427 Hpt PF01627.18 g23939.t1 - 0.038 14 0 0.088 12.8 0 1.6 1 0 0 1 1 1 0 Hpt domain | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:210875-212076 Augustus predicted protein sequence Tomato scaffold874_contigs=5~210875-212076 Myosin_HC-like PF07058.6 g33119.t1 - 0.1 11.6 0.2 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Myosin II heavy chain-like | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:14527-16664 Augustus predicted protein sequence Tomato scaffold1113_contigs=8~14527-16664 Transposase_28 PF04195.7 g2775.t1 - 0.0048 16.2 0.1 0.0066 15.7 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:34842-35963 Augustus predicted protein sequence Tomato scaffold254_contigs=6~34842-35963 DBD_Tnp_Mut PF03108.10 g67834.t1 - 0.0000048 26 0.1 0.000012 24.8 0 1.7 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:154094-162355 Augustus predicted protein sequence Tomato scaffold2197_contigs=7~154094-162355 Transposase_28 PF04195.7 g30733.t1 - 0.00021 20.6 0 0.00028 20.2 0 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:178220-179052 Augustus predicted protein sequence Tomato scaffold1046_contigs=4~178220-179052 Ribosomal_L27e PF01777.13 g62526.t1 - 0.079 13 0.8 0.13 12.4 0.5 1.4 1 1 0 1 1 1 0 Ribosomal L27e protein family | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:8024-8332 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~8024-8332 Tospo_nucleocap PF01533.11 g68191.t1 - 0.09 11.9 0 0.13 11.4 0 1.2 1 0 0 1 1 1 0 Tospovirus nucleocapsid protein | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:88144-93155 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~88144-93155 DUF2436 PF10365.4 g18130.t1 - 0.076 12.6 0 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2436) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:503200-503980 Augustus predicted protein sequence Tomato scaffold720_contigs=9~503200-503980 DUF641 PF04859.7 g87394.t1 - 0.0006 19.5 11 0.035 13.8 1.8 2.6 1 1 1 2 2 2 2 Plant protein of unknown function (DUF641) | Ref_seq=scaffold3044_contigs=1, transcript_loc=scaffold3044_contigs=1:1-1623 Augustus predicted protein sequence Tomato scaffold3044_contigs=1~1-1623 DUF4286 PF14114.1 g59743.t1 - 0.12 12.6 0 2.7 8.3 0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:168711-169683 Augustus predicted protein sequence Tomato scaffold1933_contigs=6~168711-169683 Peptidase_C97 PF05903.9 g63148.t1 - 0.00044 20 0.3 0.00061 19.5 0.2 1.2 1 0 0 1 1 1 1 PPPDE putative peptidase domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:321289-322648 Augustus predicted protein sequence Tomato scaffold2023_contigs=13~321289-322648 ATHILA PF03078.10 g20258.t1 - 0.000019 23.4 0 0.0011 17.6 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:496156-496542 Augustus predicted protein sequence Tomato scaffold768_contigs=4~496156-496542 zf-CCHC PF00098.18 g64587.t1 - 0.000094 22.1 0.7 0.00019 21.1 0.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:55058-56092 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~55058-56092 PhoU PF01895.14 g61284.t1 - 0.011 16.2 0.3 0.012 16 0.2 1.1 1 0 0 1 1 1 0 PhoU domain | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:96557-96757 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~96557-96757 IL12p40_C PF10420.4 g30066.t1 - 0.12 12.4 0 0.16 12.1 0 1.3 1 0 0 1 1 1 0 Cytokine interleukin-12p40 C-terminus | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:401490-401807 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~401490-401807 ACC_epsilon PF13822.1 g22372.t1 - 0.17 12.2 3.1 0.24 11.7 2.2 1.4 1 1 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit | Ref_seq=scaffold828_contigs=2, transcript_loc=scaffold828_contigs=2:10910-11321 Augustus predicted protein sequence Tomato scaffold828_contigs=2~10910-11321 Rotamase PF00639.16 g49285.t1 - 0.013 16.1 0 0.016 15.9 0 1.1 1 0 0 1 1 1 0 PPIC-type PPIASE domain | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:7864-8154 Augustus predicted protein sequence Tomato scaffold1532_contigs=5~7864-8154 Peptidase_C10 PF01640.12 g77985.t1 - 0.0039 16.9 0.2 0.0051 16.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase C10 family | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:132950-133552 Augustus predicted protein sequence Tomato scaffold2661_contigs=2~132950-133552 Cu-oxidase_3 PF07732.10 g75606.t1 - 0.037 13.7 0.8 7.1 6.3 0.1 2.1 1 1 0 2 2 2 0 Multicopper oxidase | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:12060-12538 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~12060-12538 DUF2613 PF11021.3 g27803.t1 - 0.013 15.1 4.8 0.024 14.3 3.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:751891-755059 Augustus predicted protein sequence Tomato scaffold983_contigs=13~751891-755059 Ni_hydr_CYTB PF01292.15 g58133.t1 - 0.12 11.7 0.5 0.12 11.7 0.3 1.1 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:130691-131137 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~130691-131137 BAR PF03114.13 g86274.t1 - 0.036 13.5 0.8 0.045 13.2 0.6 1.1 1 0 0 1 1 1 0 BAR domain | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:6855-7560 Augustus predicted protein sequence Tomato scaffold2848_contigs=1~6855-7560 DUF1043 PF06295.7 g47689.t1 - 0.014 14.9 2 2.5 7.7 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:167944-172937 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~167944-172937 ATHILA PF03078.10 g13919.t1 - 0.000022 23.2 0.4 0.000025 23 0.3 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:556801-557121 Augustus predicted protein sequence Tomato scaffold582_contigs=8~556801-557121 HTH_AraC PF00165.18 g12224.t1 - 0.13 12.1 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:49172-49465 Augustus predicted protein sequence Tomato scaffold541_contigs=3~49172-49465 Tropomyosin PF00261.15 g40927.t1 - 0.000023 23.5 11.3 0.019 14 6.5 2.2 2 0 0 2 2 2 2 Tropomyosin | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:226262-231336 Augustus predicted protein sequence Tomato scaffold1311_contigs=22~226262-231336 Chitin_bind_1 PF00187.14 g33871.t1 - 0.069 13.1 0.4 0.13 12.2 0.3 1.4 1 0 0 1 1 1 0 Chitin recognition protein | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:251512-252015 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~251512-252015 IFT57 PF10498.4 g19499.t1 - 0.014 14.1 8.4 0.014 14.1 5.8 1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:139819-140130 Augustus predicted protein sequence Tomato scaffold752_contigs=5~139819-140130 Retrotrans_gag PF03732.12 g19224.t1 - 0.041 13.9 0.1 0.055 13.5 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:156295-156645 Augustus predicted protein sequence Tomato scaffold748_contigs=11~156295-156645 Bap31 PF05529.7 g56987.t1 - 0.55 9.6 3.4 0.96 8.8 2.3 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:270305-271361 Augustus predicted protein sequence Tomato scaffold1823_contigs=11~270305-271361 Elong_Iki1 PF10483.4 g80771.t1 - 0.00059 19.2 3 0.00074 18.9 2.1 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:278365-278916 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~278365-278916 Tup_N PF08581.5 g77684.t1 - 0.019 15.1 0.3 0.028 14.6 0.2 1.2 1 0 0 1 1 1 0 Tup N-terminal | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:22393-22689 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~22393-22689 ATP-synt_E PF05680.7 g45610.t1 - 3 7.8 9.7 4.7 7.2 6.7 1.4 1 0 0 1 1 1 0 ATP synthase E chain | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:48910-49239 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~48910-49239 Mesd PF10185.4 g40092.t1 - 0.17 11.5 0.4 0.26 10.9 0.2 1.3 1 0 0 1 1 1 0 Chaperone for wingless signalling and trafficking of LDL receptor | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:93794-95250 Augustus predicted protein sequence Tomato scaffold1291_contigs=2~93794-95250 PBP1_TM PF14812.1 g24149.t1 - 5.7 7.3 7.3 110 3.1 5.1 2.2 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:368658-369002 Augustus predicted protein sequence Tomato scaffold876_contigs=13~368658-369002 PT PF04886.7 g19152.t1 - 0.11 11.8 1.7 0.22 10.8 1.2 1.5 1 0 0 1 1 1 0 PT repeat | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:94226-95231 Augustus predicted protein sequence Tomato scaffold746_contigs=6~94226-95231 zf-CCHC PF00098.18 g5632.t1 - 0.0078 16.1 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:206633-208210 Augustus predicted protein sequence Tomato scaffold334_contigs=13~206633-208210 Nro1 PF12753.2 g49899.t1 - 0.0039 16.1 0.1 0.0045 15.9 0.1 1.2 1 0 0 1 1 1 1 Nuclear pore complex subunit Nro1 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:559701-562418 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~559701-562418 UBN2_2 PF14227.1 g30378.t1 - 0.0024 17.4 0 0.0031 17 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:249963-252278 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~249963-252278 PT PF04886.7 g82665.t1 - 2.5 7.4 5.9 5.3 6.4 0.1 2.5 3 0 0 3 3 3 0 PT repeat | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:10965-12933 Augustus predicted protein sequence Tomato scaffold2747_contigs=3~10965-12933 Amelogenin PF02948.10 g44482.t1 - 0.07 13.7 7 0.086 13.4 4.8 1.1 1 0 0 1 1 1 0 Amelogenin | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:68480-69069 Augustus predicted protein sequence Tomato scaffold1430_contigs=34~68480-69069 HR1 PF02185.11 g2616.t1 - 0.18 11.5 0.9 0.32 10.7 0.2 1.7 2 0 0 2 2 2 0 Hr1 repeat | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:92464-93398 Augustus predicted protein sequence Tomato scaffold247_contigs=8~92464-93398 ATHILA PF03078.10 g79040.t1 - 0.011 14.3 0.1 0.013 14.1 0.1 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:208525-208830 Augustus predicted protein sequence Tomato scaffold2682_contigs=6~208525-208830 Tropomyosin_1 PF12718.2 g25923.t1 - 0.038 13.8 0.1 0.044 13.6 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold940_contigs=2, transcript_loc=scaffold940_contigs=2:36566-36796 Augustus predicted protein sequence Tomato scaffold940_contigs=2~36566-36796 Potassium_chann PF11404.3 g66773.t1 - 0.0029 17.3 1.9 2.1 8.2 0 2.6 3 0 0 3 3 3 2 Potassium voltage-gated channel | Ref_seq=scaffold2169_contigs=12, transcript_loc=scaffold2169_contigs=12:63410-63954 Augustus predicted protein sequence Tomato scaffold2169_contigs=12~63410-63954 zf-CCHC_4 PF14392.1 g60731.t1 - 0.069 12.8 1.1 0.14 11.8 0.7 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:134208-134597 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~134208-134597 PRCC PF10253.4 g35345.t1 - 0.06 14 3.6 0.074 13.7 2.5 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:123423-124381 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~123423-124381 DUF4259 PF14078.1 g62414.t1 - 0.046 14.2 0.3 0.12 12.8 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4259) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:17569-20143 Augustus predicted protein sequence Tomato scaffold1994_contigs=7~17569-20143 Mito_fiss_reg PF05308.6 g17503.t1 - 0.096 12 4.7 0.11 11.8 3.3 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:239396-239812 Augustus predicted protein sequence Tomato scaffold707_contigs=5~239396-239812 AAA_33 PF13671.1 g70016.t1 - 0.014 15.2 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:236281-242661 Augustus predicted protein sequence Tomato scaffold2319_contigs=5~236281-242661 PsbP PF01789.11 g17069.t1 - 0.078 12.4 0.1 0.19 11.1 0.1 1.6 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:86519-87340 Augustus predicted protein sequence Tomato scaffold694_contigs=2~86519-87340 ALIX_LYPXL_bnd PF13949.1 g38822.t1 - 0.0044 16 0.2 0.0062 15.5 0.2 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:190879-191787 Augustus predicted protein sequence Tomato scaffold1252_contigs=16~190879-191787 DegS PF05384.6 g16352.t1 - 0.015 14.4 1.4 0.02 14.1 0.9 1.1 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:335409-335702 Augustus predicted protein sequence Tomato scaffold668_contigs=10~335409-335702 ParB PF08775.5 g8161.t1 - 0.0099 16.1 0.5 0.018 15.3 0.3 1.4 1 0 0 1 1 1 1 ParB family | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:201405-202133 Augustus predicted protein sequence Tomato scaffold421_contigs=12~201405-202133 ATHILA PF03078.10 g40437.t1 - 3.3E-009 35.8 0 0.000065 21.7 0 2.4 3 0 0 3 3 3 2 ATHILA ORF-1 family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:217079-218288 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~217079-218288 DUF2219 PF09982.4 g87586.t1 - 0.046 12.5 4.5 21 3.7 0 3.8 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold3360_contigs=1, transcript_loc=scaffold3360_contigs=1:917-2743 Augustus predicted protein sequence Tomato scaffold3360_contigs=1~917-2743 MDM1 PF15501.1 g43195.t1 - 0.15 10.9 0.5 0.18 10.7 0.3 1 1 0 0 1 1 1 0 Nuclear protein MDM1 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:40215-40535 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~40215-40535 DUF3563 PF12086.3 g28690.t1 - 0.000023 24 1 0.28 10.9 0.1 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF3563) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:46661-48719 Augustus predicted protein sequence Tomato scaffold1009_contigs=17~46661-48719 AMPKBI PF04739.10 g16481.t1 - 1 9.2 5.5 2.3 8.1 3.8 1.5 1 0 0 1 1 1 0 5'-AMP-activated protein kinase beta subunit, interation domain | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:261009-267083 Augustus predicted protein sequence Tomato scaffold671_contigs=7~261009-267083 IFP_35_N PF07334.8 g24454.t1 - 0.000033 23.7 0.5 0.3 11 0 2.6 2 0 0 2 2 2 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold882_contigs=2, transcript_loc=scaffold882_contigs=2:8312-10461 Augustus predicted protein sequence Tomato scaffold882_contigs=2~8312-10461 DUF2457 PF10446.4 g53089.t1 - 0.015 14 26.4 0.018 13.7 18.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:146615-147256 Augustus predicted protein sequence Tomato scaffold1674_contigs=9~146615-147256 ATHILA PF03078.10 g50182.t1 - 0.000092 21.2 0.1 0.00011 20.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:132781-133786 Augustus predicted protein sequence Tomato scaffold1557_contigs=8~132781-133786 HNH_2 PF13391.1 g16449.t1 - 0.061 13.1 0 0.083 12.6 0 1.3 1 1 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:144881-146102 Augustus predicted protein sequence Tomato scaffold671_contigs=7~144881-146102 FAM117 PF15388.1 g79682.t1 - 0.2 10.8 1.7 0.29 10.3 1.1 1.4 1 1 0 1 1 1 0 Protein Family FAM117 | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:163779-164558 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~163779-164558 DUF2862 PF11061.3 g44671.t1 - 0.077 12.7 0 0.092 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) | Ref_seq=scaffold1437_contigs=6, transcript_loc=scaffold1437_contigs=6:225477-226371 Augustus predicted protein sequence Tomato scaffold1437_contigs=6~225477-226371 Ycf54 PF10674.4 g26997.t1 - 0.043 13.9 0.6 4.8 7.3 0.1 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF2488) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:152025-152541 Augustus predicted protein sequence Tomato scaffold965_contigs=10~152025-152541 NeuB PF03102.9 g71753.t1 - 0.056 12.5 0.2 0.65 9 0 2 1 1 0 2 2 2 0 NeuB family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:127894-128220 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~127894-128220 RVT_3 PF13456.1 g16344.t1 - 0.000066 22.6 0.3 0.00023 20.8 0 1.9 2 1 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:306754-308068 Augustus predicted protein sequence Tomato scaffold668_contigs=10~306754-308068 CaMKII_AD PF08332.5 g35391.t1 - 0.034 14 0 0.22 11.4 0 1.9 1 1 1 2 2 2 0 Calcium/calmodulin dependent protein kinase II Association | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:282796-283620 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~282796-283620 MUG2_C PF08593.5 g49850.t1 - 0.74 10 3.5 2.2 8.5 0.1 2.6 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:428887-429246 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~428887-429246 bZIP_1 PF00170.16 g60088.t1 - 7.3 6.6 10.5 2.2 8.2 0.8 2.9 2 1 1 3 3 3 0 bZIP transcription factor | Ref_seq=scaffold1941_contigs=2, transcript_loc=scaffold1941_contigs=2:13868-14794 Augustus predicted protein sequence Tomato scaffold1941_contigs=2~13868-14794 NPV_P10 PF05531.7 g67131.t1 - 0.18 12 1.3 2.1 8.6 0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:66878-73110 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~66878-73110 Arc PF03869.9 g69143.t1 - 3.1 7.5 8.1 35 4.1 0 3.6 3 1 0 3 3 3 0 Arc-like DNA binding domain | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:164583-165525 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~164583-165525 DUF2215 PF10225.4 g83036.t1 - 0.15 11.5 0.2 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:77572-79679 Augustus predicted protein sequence Tomato scaffold2754_contigs=4~77572-79679 Dimer_Tnp_hAT PF05699.9 g72866.t1 - 0.00000035 29.7 0 0.0000005 29.2 0 1.2 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:501095-501521 Augustus predicted protein sequence Tomato scaffold2434_contigs=40~501095-501521 Minor_capsid_3 PF12691.2 g65110.t1 - 0.012 15.3 0 4.6 6.9 0 2.1 2 0 0 2 2 2 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold2116_contigs=9, transcript_loc=scaffold2116_contigs=9:11361-12632 Augustus predicted protein sequence Tomato scaffold2116_contigs=9~11361-12632 Ribosomal_S28e PF01200.13 g64903.t1 - 0.07 12.8 0.5 0.16 11.7 0.3 1.6 1 1 0 1 1 1 0 Ribosomal protein S28e | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:43505-43753 Augustus predicted protein sequence Tomato scaffold2100_contigs=9~43505-43753 DUF4055 PF13264.1 g57525.t1 - 0.16 12 1.5 0.22 11.6 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:19103-19791 Augustus predicted protein sequence Tomato scaffold1834_contigs=13~19103-19791 CENP-R PF06729.7 g37005.t1 - 0.054 13.1 6.1 0.063 12.9 3.7 1.4 1 1 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:533562-533957 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~533562-533957 PMD PF10536.4 g28075.t1 - 0.000000069 31.8 0 0.00000011 31.2 0 1.3 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:219921-229181 Augustus predicted protein sequence Tomato scaffold990_contigs=6~219921-229181 Somatostatin PF03002.10 g64575.t1 - 0.26 10.9 1.8 0.34 10.5 0.2 1.9 2 0 0 2 2 2 0 Somatostatin/Cortistatin family | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:378924-380710 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~378924-380710 DUF2537 PF10801.3 g69788.t1 - 0.076 13.1 2.3 0.13 12.3 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2537) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:928280-928582 Augustus predicted protein sequence Tomato scaffold2305_contigs=28~928280-928582 TSP_1 PF00090.14 g4931.t1 - 1.4 9.1 0.1 1.4 9.1 0.1 3 3 1 1 4 4 4 0 Thrombospondin type 1 domain | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:141487-141900 Augustus predicted protein sequence Tomato scaffold311_contigs=5~141487-141900 zf-CCHC PF00098.18 g36210.t1 - 0.00024 20.8 0.9 0.00024 20.8 0.6 2 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:198551-200301 Augustus predicted protein sequence Tomato scaffold1188_contigs=5~198551-200301 zf-CCHC PF00098.18 g7055.t1 - 0.00027 20.7 1.5 0.0004 20.1 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:340883-341470 Augustus predicted protein sequence Tomato scaffold386_contigs=10~340883-341470 DUF3013 PF11217.3 g42568.t1 - 0.065 12.9 0 0.069 12.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3013) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:243442-243738 Augustus predicted protein sequence Tomato scaffold1361_contigs=6~243442-243738 UBN2_2 PF14227.1 g44513.t1 - 0.00000045 29.4 2.6 0.0021 17.5 0.1 2.9 1 1 2 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:8959-9747 Augustus predicted protein sequence Tomato scaffold1432_contigs=9~8959-9747 DNA_photolyase PF00875.13 g54482.t1 - 0.054 13.2 0 0.11 12.2 0 1.5 1 0 0 1 1 1 0 DNA photolyase | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:239461-242350 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~239461-242350 EF-hand_9 PF14658.1 g69274.t1 - 0.036 13.9 0 0.053 13.4 0 1.2 1 0 0 1 1 1 0 EF-hand domain | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:14992-15375 Augustus predicted protein sequence Tomato scaffold2268_contigs=6~14992-15375 Na_H_antiport_1 PF06965.7 g81560.t1 - 0.019 13.7 0 0.027 13.2 0 1.3 1 0 0 1 1 1 0 Na+/H+ antiporter 1 | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:86605-87786 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~86605-87786 MMR1 PF08505.5 g8760.t1 - 0.028 14.4 0.3 0.031 14.3 0.2 1 1 0 0 1 1 1 0 Mitochondrial Myo2 receptor-related protein | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:46776-47171 Augustus predicted protein sequence Tomato scaffold436_contigs=4~46776-47171 Nup96 PF12110.3 g35436.t1 - 0.15 11.1 0.4 0.23 10.5 0.2 1.4 1 0 0 1 1 1 0 Nuclear protein 96 | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:400732-402401 Augustus predicted protein sequence Tomato scaffold1179_contigs=8~400732-402401 CagY_M PF07337.6 g84008.t1 - 0.52 9.8 2.7 0.91 9 0.2 2.5 3 0 0 3 3 3 0 DC-EC Repeat | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:104540-104800 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~104540-104800 NdhO PF11910.3 g65901.t1 - 0.034 13.7 0 15 5.2 0 2.8 3 0 0 3 3 3 0 Cyanobacterial and plant NDH-1 subunit O | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:78602-81790 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~78602-81790 zf-Dof PF02701.10 g69643.t1 - 1.5 8.8 5.5 0.85 9.5 2.1 1.8 2 0 0 2 2 2 0 Dof domain, zinc finger | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:456331-456636 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~456331-456636 DUF4219 PF13961.1 g2040.t1 - 0.000028 23.4 0.3 0.000047 22.6 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:194708-195857 Augustus predicted protein sequence Tomato scaffold223_contigs=4~194708-195857 IncA PF04156.9 g85357.t1 - 0.0019 17.8 5.7 0.0027 17.3 4 1.2 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:60083-62749 Augustus predicted protein sequence Tomato scaffold2801_contigs=1~60083-62749 DUF3688 PF12461.3 g86335.t1 - 0.053 13.9 0 0.094 13.1 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3688) | Ref_seq=scaffold2852_contigs=1, transcript_loc=scaffold2852_contigs=1:25347-28013 Augustus predicted protein sequence Tomato scaffold2852_contigs=1~25347-28013 CD99L2 PF12301.3 g18921.t1 - 0.14 11.8 1.2 0.15 11.7 0.9 1.1 1 0 0 1 1 1 0 CD99 antigen like protein 2 | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:5095-5340 Augustus predicted protein sequence Tomato scaffold738_contigs=9~5095-5340 PocR PF10114.4 g75881.t1 - 0.12 11.4 0 0.14 11.3 0 1.1 1 0 0 1 1 1 0 Sensory domain found in PocR | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:158331-158594 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~158331-158594 Cep57_CLD_2 PF14197.1 g19632.t1 - 1.2 9.1 4.4 9.6 6.2 3 2.3 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:243750-244505 Augustus predicted protein sequence Tomato scaffold756_contigs=8~243750-244505 ATHILA PF03078.10 g34155.t1 - 0.000072 21.5 0.1 0.022 13.3 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:21610-22223 Augustus predicted protein sequence Tomato scaffold1143_contigs=1~21610-22223 DUF1510 PF07423.6 g5536.t1 - 0.023 14 6.4 0.03 13.6 4.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:5673-6485 Augustus predicted protein sequence Tomato scaffold331_contigs=3~5673-6485 Caps_synth_GfcC PF06251.6 g12680.t1 - 0.1 11.7 0.1 0.14 11.3 0.1 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:762080-762905 Augustus predicted protein sequence Tomato scaffold556_contigs=11~762080-762905 RALF PF05498.6 g5428.t1 - 0.000024 25 0.2 0.000039 24.3 0.1 1.4 1 0 0 1 1 1 1 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold327_contigs=7, transcript_loc=scaffold327_contigs=7:267419-267652 Augustus predicted protein sequence Tomato scaffold327_contigs=7~267419-267652 Matrilin_ccoil PF10393.4 g87569.t1 - 0.022 14.1 0 0.035 13.4 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3327_contigs=1, transcript_loc=scaffold3327_contigs=1:1-650 Augustus predicted protein sequence Tomato scaffold3327_contigs=1~1-650 DUF3363 PF11843.3 g13921.t1 - 0.048 12.2 0.6 0.053 12.1 0.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:557860-558270 Augustus predicted protein sequence Tomato scaffold582_contigs=8~557860-558270 RasGEF PF00617.14 g41432.t1 - 0.028 14.1 0.1 0.037 13.7 0.1 1.1 1 0 0 1 1 1 0 RasGEF domain | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:129708-130221 Augustus predicted protein sequence Tomato scaffold1332_contigs=3~129708-130221 Retrotrans_gag PF03732.12 g87101.t1 - 0.031 14.3 0 0.051 13.6 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2937_contigs=1, transcript_loc=scaffold2937_contigs=1:14165-17332 Augustus predicted protein sequence Tomato scaffold2937_contigs=1~14165-17332 MAGSP PF03082.9 g16784.t1 - 0.13 11.6 0.1 0.16 11.2 0 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:19836-21521 Augustus predicted protein sequence Tomato scaffold682_contigs=5~19836-21521 PHD PF00628.24 g19290.t1 - 0.0044 16.6 2.9 1.1 9 0.4 2.3 1 1 1 2 2 2 2 PHD-finger | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:32942-33322 Augustus predicted protein sequence Tomato scaffold750_contigs=7~32942-33322 Phage_integrase PF00589.17 g87608.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:218-562 Augustus predicted protein sequence Tomato scaffold3413_contigs=1~218-562 Het-C PF07217.6 g86483.t1 - 0.0097 14.1 0 0.011 13.9 0 1.1 1 0 0 1 1 1 1 Heterokaryon incompatibility protein Het-C | Ref_seq=scaffold2865_contigs=1, transcript_loc=scaffold2865_contigs=1:41635-42181 Augustus predicted protein sequence Tomato scaffold2865_contigs=1~41635-42181 Phage_T4_gp19 PF06841.7 g8415.t1 - 0.047 13.3 0.5 0.06 12.9 0.3 1.2 1 0 0 1 1 1 0 T4-like virus tail tube protein gp19 | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:148643-149077 Augustus predicted protein sequence Tomato scaffold426_contigs=7~148643-149077 Diphtheria_C PF02763.9 g58851.t1 - 0.084 12.3 0 0.089 12.2 0 1.2 1 0 0 1 1 1 0 Diphtheria toxin, C domain | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:61165-61560 Augustus predicted protein sequence Tomato scaffold1877_contigs=4~61165-61560 RVT_3 PF13456.1 g54700.t1 - 0.0084 15.8 0 0.035 13.8 0 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1726_contigs=2, transcript_loc=scaffold1726_contigs=2:27011-27391 Augustus predicted protein sequence Tomato scaffold1726_contigs=2~27011-27391 CRISPR_Cse2 PF09485.5 g75861.t1 - 0.0034 17.4 0 3.1 7.8 0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein Cse2 (CRISPR_cse2) | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:113169-114218 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~113169-114218 CusF_Ec PF11604.3 g47216.t1 - 0.12 12.3 0 0.16 11.8 0 1.2 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:249262-249468 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~249262-249468 CCDC155 PF14662.1 g25198.t1 - 0.011 15.3 0.4 0.011 15.3 0.3 1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:75644-75850 Augustus predicted protein sequence Tomato scaffold924_contigs=4~75644-75850 Pox_A6 PF04924.7 g40461.t1 - 0.094 11.5 0 0.15 10.8 0 1.2 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:332857-333714 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~332857-333714 DUF4219 PF13961.1 g58776.t1 - 0.0046 16.3 0 0.0093 15.3 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:175618-177148 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~175618-177148 Macoilin PF09726.4 g79554.t1 - 0.21 9.8 2.1 0.24 9.6 1.5 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:69460-69909 Augustus predicted protein sequence Tomato scaffold2698_contigs=8~69460-69909 Arc PF03869.9 g87759.t1 - 0.49 10 2.1 5.5 6.6 0.1 2.3 2 0 0 2 2 2 0 Arc-like DNA binding domain | Ref_seq=scaffold3978_contigs=1, transcript_loc=scaffold3978_contigs=1:1-1331 Augustus predicted protein sequence Tomato scaffold3978_contigs=1~1-1331 VLPT PF07122.6 g17474.t1 - 0.18 11.4 0.5 13 5.5 0 2.5 2 0 0 2 2 2 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:150402-150815 Augustus predicted protein sequence Tomato scaffold707_contigs=5~150402-150815 Lzipper-MIP1 PF14389.1 g6018.t1 - 0.016 15.3 0 0.022 14.8 0 1.2 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:57379-57621 Augustus predicted protein sequence Tomato scaffold346_contigs=1~57379-57621 CENP-F_leu_zip PF10473.4 g17955.t1 - 0.035 13.9 7.1 0.052 13.4 4.3 1.6 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:33713-35581 Augustus predicted protein sequence Tomato scaffold720_contigs=9~33713-35581 ACR_tran PF00873.14 g58327.t1 - 0.054 10.9 0.1 0.063 10.6 0.1 1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:87687-88181 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~87687-88181 DUF3293 PF11697.3 g75656.t1 - 0.097 12.8 0.6 0.25 11.4 0.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3293) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:230127-230677 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~230127-230677 tRNA-synt_1 PF00133.17 g54476.t1 - 0.013 13.5 0 0.014 13.4 0 1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:213781-214121 Augustus predicted protein sequence Tomato scaffold1721_contigs=4~213781-214121 ATHILA PF03078.10 g2198.t1 - 0.000000021 33.2 0 0.00000055 28.5 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:174717-175447 Augustus predicted protein sequence Tomato scaffold228_contigs=4~174717-175447 CAF1 PF04857.15 g39641.t1 - 0.11 11.8 0 0.11 11.8 0 1.1 1 0 0 1 1 1 0 CAF1 family ribonuclease | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:580226-581790 Augustus predicted protein sequence Tomato scaffold1273_contigs=11~580226-581790 Tropomyosin PF00261.15 g14211.t1 - 0.13 11.3 0.1 0.14 11.2 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:356358-356774 Augustus predicted protein sequence Tomato scaffold586_contigs=6~356358-356774 DUF342 PF03961.8 g83292.t1 - 0.0077 14.6 3 0.01 14.3 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF342) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:139244-144968 Augustus predicted protein sequence Tomato scaffold2760_contigs=2~139244-144968 Orexin PF02072.10 g33739.t1 - 0.25 11.1 5.9 12 5.6 4.1 2.2 1 1 0 1 1 1 0 Prepro-orexin | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:211379-211720 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~211379-211720 BLVR PF06375.6 g37104.t1 - 0.00011 22.1 7.1 0.00014 21.6 4.9 1.2 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:286903-287409 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~286903-287409 TPPK_C PF12555.3 g68201.t1 - 0.18 11.5 0.9 0.28 10.9 0.6 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:121708-122005 Augustus predicted protein sequence Tomato scaffold2208_contigs=7~121708-122005 Retinal PF15449.1 g65733.t1 - 0.094 10.3 1.3 0.11 10.1 0.9 1 1 0 0 1 1 1 0 Retinal protein | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:53162-53956 Augustus predicted protein sequence Tomato scaffold2138_contigs=7~53162-53956 DUF3487 PF11990.3 g3271.t1 - 0.023 14.1 0.1 0.035 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:141998-143197 Augustus predicted protein sequence Tomato scaffold265_contigs=4~141998-143197 Cupin_2 PF07883.6 g9519.t1 - 0.098 12.1 0.3 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 Cupin domain | Ref_seq=scaffold459_contigs=2, transcript_loc=scaffold459_contigs=2:6414-6686 Augustus predicted protein sequence Tomato scaffold459_contigs=2~6414-6686 Ldl_recept_b PF00058.12 g65248.t1 - 0.026 14.8 0 6.3 7.2 0 2.3 2 0 0 2 2 2 0 Low-density lipoprotein receptor repeat class B | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:39886-40173 Augustus predicted protein sequence Tomato scaffold2122_contigs=11~39886-40173 DUF2694 PF10904.3 g51096.t1 - 0.025 14.5 0.4 0.047 13.6 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:86467-88565 Augustus predicted protein sequence Tomato scaffold1606_contigs=13~86467-88565 ATHILA PF03078.10 g37918.t1 - 0.11 11 0 8.9 4.7 0 2.1 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:225220-226557 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~225220-226557 Rbsn PF11464.3 g24387.t1 - 0.023 14.2 1.2 0.034 13.7 0.8 1.3 1 0 0 1 1 1 0 Rabenosyn Rab binding domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:420919-421173 Augustus predicted protein sequence Tomato scaffold880_contigs=9~420919-421173 Rubis-subs-bind PF09273.6 g29132.t1 - 0.034 14 0 0.045 13.6 0 1.3 1 0 0 1 1 1 0 Rubisco LSMT substrate-binding | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:90168-90491 Augustus predicted protein sequence Tomato scaffold1013_contigs=9~90168-90491 IP_trans PF02121.13 g77878.t1 - 0.0026 17 0.6 0.0032 16.6 0.4 1.1 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:677574-678347 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~677574-678347 RVT_3 PF13456.1 g65220.t1 - 0.016 14.9 0 0.022 14.5 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:368951-369244 Augustus predicted protein sequence Tomato scaffold2119_contigs=20~368951-369244 Atg14 PF10186.4 g62126.t1 - 0.47 9.3 4.9 0.62 8.9 3.4 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:54639-55911 Augustus predicted protein sequence Tomato scaffold1983_contigs=2~54639-55911 RVT_3 PF13456.1 g86145.t1 - 0.0011 18.6 0 0.0016 18.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:23193-23513 Augustus predicted protein sequence Tomato scaffold2839_contigs=1~23193-23513 DUF2099 PF09872.4 g37755.t1 - 0.018 14 0 0.023 13.7 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:203740-208088 Augustus predicted protein sequence Tomato scaffold1238_contigs=39~203740-208088 TAP_C PF03943.8 g50349.t1 - 0.13 11.7 0.1 0.22 10.9 0.1 1.5 1 0 0 1 1 1 0 TAP C-terminal domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:134136-134447 Augustus predicted protein sequence Tomato scaffold1564_contigs=8~134136-134447 Gal4_dimer PF03902.8 g44197.t1 - 0.071 13 0.1 0.41 10.6 0 1.9 2 0 0 2 2 2 0 Gal4-like dimerisation domain | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:70670-70879 Augustus predicted protein sequence Tomato scaffold1415_contigs=17~70670-70879 FXR1P_C PF12235.3 g28983.t1 - 0.035 14.2 0.8 0.057 13.5 0.6 1.3 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:107771-109344 Augustus predicted protein sequence Tomato scaffold1011_contigs=17~107771-109344 DUF1864 PF08933.6 g59474.t1 - 0.059 11.8 0 0.082 11.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:18698-19555 Augustus predicted protein sequence Tomato scaffold1925_contigs=8~18698-19555 RVT_3 PF13456.1 g13745.t1 - 0.000057 22.8 0 0.000079 22.3 0 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:19485-19873 Augustus predicted protein sequence Tomato scaffold582_contigs=8~19485-19873 PRESAN PF09687.5 g41804.t1 - 0.014 15.4 0.3 0.017 15.1 0.2 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:10787-11056 Augustus predicted protein sequence Tomato scaffold1344_contigs=2~10787-11056 RR_TM4-6 PF06459.7 g44065.t1 - 0.088 12.6 1.2 0.12 12.2 0.8 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:229631-232933 Augustus predicted protein sequence Tomato scaffold1403_contigs=11~229631-232933 DUF4248 PF14053.1 g63444.t1 - 0.087 12.4 0 0.16 11.5 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:15515-16737 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~15515-16737 Phage_HK97_TLTM PF06120.6 g31941.t1 - 0.038 13.3 0 0.044 13.1 0 1.1 1 0 0 1 1 1 0 Tail length tape measure protein | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:32009-32311 Augustus predicted protein sequence Tomato scaffold1097_contigs=2~32009-32311 Gly-rich_Ago1 PF12764.2 g15842.t1 - 0.049 14.2 0.4 0.056 14 0.2 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold648_contigs=4, transcript_loc=scaffold648_contigs=4:1-227 Augustus predicted protein sequence Tomato scaffold648_contigs=4~1-227 zf-met2 PF12907.2 g25179.t1 - 0.003 17.4 0.1 0.0054 16.6 0 1.4 1 0 0 1 1 1 1 Zinc-binding | Ref_seq=scaffold922_contigs=1, transcript_loc=scaffold922_contigs=1:21187-21738 Augustus predicted protein sequence Tomato scaffold922_contigs=1~21187-21738 ATP-synt_B PF00430.13 g82638.t1 - 0.061 13.1 4.6 0.073 12.8 3.2 1.1 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:328019-328405 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~328019-328405 End_N_terminal PF12218.3 g27360.t1 - 0.14 11.6 0 0.3 10.5 0 1.6 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:166-552 Augustus predicted protein sequence Tomato scaffold976_contigs=1~166-552 LRS4 PF10422.4 g50099.t1 - 0.031 13.6 3 0.12 11.7 2.1 1.9 1 1 0 1 1 1 0 Monopolin complex subunit LRS4 | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:224969-225736 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~224969-225736 Ycf54 PF10674.4 g3957.t1 - 0.00048 20.1 2.7 18 5.5 0 4.9 1 1 5 6 6 6 1 Protein of unknown function (DUF2488) | Ref_seq=scaffold284_contigs=1, transcript_loc=scaffold284_contigs=1:39726-44485 Augustus predicted protein sequence Tomato scaffold284_contigs=1~39726-44485 DUF1985 PF09331.6 g86380.t1 - 3.4E-009 36.6 0 5.7E-009 35.9 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:28586-32144 Augustus predicted protein sequence Tomato scaffold2856_contigs=1~28586-32144 Chromo PF00385.19 g2451.t1 - 0.00014 21.4 0 0.00022 20.8 0 1.3 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold238_contigs=5, transcript_loc=scaffold238_contigs=5:22229-22807 Augustus predicted protein sequence Tomato scaffold238_contigs=5~22229-22807 CHORD PF04968.7 g87339.t1 - 0.0068 16.6 0.1 5.6 7.2 0 2.3 2 0 0 2 2 2 2 CHORD | Ref_seq=scaffold3009_contigs=1, transcript_loc=scaffold3009_contigs=1:6523-7051 Augustus predicted protein sequence Tomato scaffold3009_contigs=1~6523-7051 CAF-1_p150 PF11600.3 g25875.t1 - 0.0012 18.2 26.6 0.0016 17.8 18.4 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:100514-101104 Augustus predicted protein sequence Tomato scaffold937_contigs=20~100514-101104 FH2 PF02181.18 g68046.t1 - 0.028 13.2 0.1 0.037 12.9 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:233810-236517 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~233810-236517 ATHILA PF03078.10 g2910.t1 - 1.8E-018 66.3 0.2 0.00000003 32.7 0 3 1 1 1 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:87536-88781 Augustus predicted protein sequence Tomato scaffold257_contigs=2~87536-88781 muHD PF10291.4 g46528.t1 - 0.069 12.3 0 0.1 11.7 0 1.2 1 0 0 1 1 1 0 Muniscin C-terminal mu homology domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:354626-355626 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~354626-355626 ATHILA PF03078.10 g22873.t1 - 5.6E-009 35 0 6.4E-009 34.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold835_contigs=3, transcript_loc=scaffold835_contigs=3:26044-26361 Augustus predicted protein sequence Tomato scaffold835_contigs=3~26044-26361 DUF313 PF03754.8 g15438.t1 - 0.00015 21.6 0 0.00019 21.2 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF313) | Ref_seq=scaffold626_contigs=2, transcript_loc=scaffold626_contigs=2:38350-38745 Augustus predicted protein sequence Tomato scaffold626_contigs=2~38350-38745 FRG1 PF06229.7 g4097.t1 - 0.008 15.6 6.2 0.01 15.3 4.3 1 1 0 0 1 1 1 1 FRG1-like family | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:38256-38672 Augustus predicted protein sequence Tomato scaffold291_contigs=11~38256-38672 IF-2 PF11987.3 g25486.t1 - 0.041 13.7 0.2 0.05 13.4 0.1 1.1 1 0 0 1 1 1 0 Translation-initiation factor 2 | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:37540-37995 Augustus predicted protein sequence Tomato scaffold929_contigs=9~37540-37995 CNP1 PF08750.6 g63037.t1 - 0.085 12.5 1 0.099 12.3 0.7 1.1 1 0 0 1 1 1 0 CNP1-like family | Ref_seq=scaffold2021_contigs=4, transcript_loc=scaffold2021_contigs=4:43830-44060 Augustus predicted protein sequence Tomato scaffold2021_contigs=4~43830-44060 Serglycin PF04360.7 g8996.t1 - 2.3 7.9 9.3 2.3 7.9 6.1 1.5 1 1 0 1 1 1 0 Serglycin | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:289411-289800 Augustus predicted protein sequence Tomato scaffold443_contigs=11~289411-289800 zf-CCHC PF00098.18 g5029.t1 - 0.055 13.4 0.2 0.055 13.4 0.1 2.9 4 0 0 4 4 4 0 Zinc knuckle | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:83515-83907 Augustus predicted protein sequence Tomato scaffold315_contigs=11~83515-83907 MHCassoc_trimer PF08831.5 g62585.t1 - 0.14 11.9 1.7 0.24 11.2 1.2 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:302695-303063 Augustus predicted protein sequence Tomato scaffold1996_contigs=15~302695-303063 DpnD-PcfM PF14207.1 g5535.t1 - 0.058 13.1 4.2 0.21 11.3 2.9 1.9 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:4140-5600 Augustus predicted protein sequence Tomato scaffold331_contigs=3~4140-5600 DUF2868 PF11067.3 g57968.t1 - 0.039 13 0.1 0.049 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:164840-165567 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~164840-165567 Antifungal_pept PF11410.3 g3000.t1 - 0.88 9.7 8.6 0.3 11.1 3.8 1.8 2 0 0 2 2 2 0 Antifungal peptide | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:322709-323893 Augustus predicted protein sequence Tomato scaffold257_contigs=2~322709-323893 DUF998 PF06197.8 g71140.t1 - 0.13 11.5 1.9 0.2 10.9 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) | Ref_seq=scaffold2356_contigs=4, transcript_loc=scaffold2356_contigs=4:58220-62842 Augustus predicted protein sequence Tomato scaffold2356_contigs=4~58220-62842 Peptidase_C14 PF00656.17 g11178.t1 - 0.074 12.7 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Caspase domain | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:8075-8631 Augustus predicted protein sequence Tomato scaffold519_contigs=1~8075-8631 DUF2205 PF10224.4 g52452.t1 - 0.028 13.9 0.8 0.062 12.8 0.1 1.7 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:76886-77173 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~76886-77173 DUF4047 PF13256.1 g35108.t1 - 0.0083 16 0.4 0.03 14.2 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4047) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:260300-261098 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~260300-261098 Thioredoxin_9 PF14595.1 g19581.t1 - 0.05 13.1 0 0.092 12.3 0 1.4 1 0 0 1 1 1 0 Thioredoxin | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:100535-101640 Augustus predicted protein sequence Tomato scaffold756_contigs=8~100535-101640 T_Ag_DNA_bind PF02217.11 g24000.t1 - 0.11 12.8 1.3 0.19 12.1 0.9 1.4 1 0 0 1 1 1 0 Origin of replication binding protein | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:78152-78817 Augustus predicted protein sequence Tomato scaffold875_contigs=10~78152-78817 Self-incomp_S1 PF05938.6 g82246.t1 - 0.00066 19.7 0.7 0.0012 18.9 0.3 1.6 1 1 1 2 2 2 1 Plant self-incompatibility protein S1 | Ref_seq=scaffold2739_contigs=11, transcript_loc=scaffold2739_contigs=11:177337-179395 Augustus predicted protein sequence Tomato scaffold2739_contigs=11~177337-179395 Tropomyosin PF00261.15 g38669.t1 - 0.011 14.8 0 0.013 14.6 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:66359-66775 Augustus predicted protein sequence Tomato scaffold1249_contigs=2~66359-66775 CDC45 PF02724.9 g1782.t1 - 0.021 12.9 12.3 0.021 12.8 8.5 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:8781-9809 Augustus predicted protein sequence Tomato scaffold217_contigs=3~8781-9809 Glycohydro_20b2 PF14845.1 g72211.t1 - 0.0026 18.4 0 0.0041 17.7 0 1.5 1 0 0 1 1 1 1 beta-acetyl hexosaminidase like | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:646877-653833 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~646877-653833 Retrotrans_gag PF03732.12 g34771.t1 - 0.00012 22 0.3 0.0003 20.8 0.2 1.6 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:98397-103284 Augustus predicted protein sequence Tomato scaffold1157_contigs=12~98397-103284 ArabFuran-catal PF09206.6 g40960.t1 - 0.043 12.7 0 0.066 12.1 0 1.2 1 0 0 1 1 1 0 Alpha-L-arabinofuranosidase B, catalytic | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:4546-10390 Augustus predicted protein sequence Tomato scaffold1317_contigs=17~4546-10390 DUF3809 PF12723.2 g84391.t1 - 0.0042 16.9 0.3 1.1 9.1 0 2.5 1 1 2 3 3 3 3 Protein of unknown function (DUF3809) | Ref_seq=scaffold2768_contigs=1, transcript_loc=scaffold2768_contigs=1:143637-143939 Augustus predicted protein sequence Tomato scaffold2768_contigs=1~143637-143939 FAM104 PF15434.1 g46095.t1 - 0.063 13.4 0.8 0.063 13.4 0.6 1.9 2 1 0 2 2 2 0 Family 104 | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:47886-48905 Augustus predicted protein sequence Tomato scaffold1476_contigs=2~47886-48905 MCPVI PF02993.9 g72640.t1 - 6.1 6.9 14.9 12 6 10.3 1.5 1 1 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:113345-114079 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~113345-114079 DREPP PF05558.7 g31756.t1 - 0.48 10.2 4.9 0.6 9.9 3.4 1.1 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide | Ref_seq=scaffold1087_contigs=6, transcript_loc=scaffold1087_contigs=6:14405-16466 Augustus predicted protein sequence Tomato scaffold1087_contigs=6~14405-16466 HD-ZIP_N PF04618.7 g75466.t1 - 0.92 10 7.7 2.2 8.8 5.1 2 2 1 0 2 2 2 0 HD-ZIP protein N terminus | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:1085-1522 Augustus predicted protein sequence Tomato scaffold2598_contigs=24~1085-1522 Mito_fiss_reg PF05308.6 g77044.t1 - 0.55 9.5 3.3 12 5.1 0.4 2.1 2 0 0 2 2 2 0 Mitochondrial fission regulator | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:13555-14299 Augustus predicted protein sequence Tomato scaffold2646_contigs=41~13555-14299 Use1 PF09753.4 g54790.t1 - 0.064 12.6 0.4 0.078 12.4 0.3 1.1 1 0 0 1 1 1 0 Membrane fusion protein Use1 | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:68056-68451 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~68056-68451 CENP-O PF09496.5 g2173.t1 - 0.006 16.7 0.2 0.0088 16.2 0.1 1.4 1 0 0 1 1 1 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:64411-64761 Augustus predicted protein sequence Tomato scaffold228_contigs=4~64411-64761 RR_TM4-6 PF06459.7 g60149.t1 - 2.1 8.1 5.7 2.4 7.9 3.9 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:160294-160863 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~160294-160863 TPR_7 PF13176.1 g31008.t1 - 0.11 12.2 0 0.22 11.3 0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:301992-303628 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~301992-303628 Phyto_Pns9_10 PF05878.6 g4762.t1 - 2.9 6.8 5.3 4.4 6.2 3.7 1.2 1 0 0 1 1 1 0 Phytoreovirus nonstructural protein Pns9/Pns10 | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:107999-111792 Augustus predicted protein sequence Tomato scaffold307_contigs=2~107999-111792 ATHILA PF03078.10 g37881.t1 - 0.00078 18.1 0 0.0015 17.2 0 1.4 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:150061-150879 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~150061-150879 DUF1835 PF08874.5 g3467.t1 - 0.14 12.1 0 0.17 11.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1835) | Ref_seq=scaffold273_contigs=2, transcript_loc=scaffold273_contigs=2:31181-33121 Augustus predicted protein sequence Tomato scaffold273_contigs=2~31181-33121 CENP-I PF07778.6 g56844.t1 - 0.14 10.3 0 0.17 10 0 1.1 1 0 0 1 1 1 0 Mis6 | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:68084-70423 Augustus predicted protein sequence Tomato scaffold1821_contigs=10~68084-70423 PilI PF10623.4 g75510.t1 - 0.013 15.3 0 3.7 7.5 0 2.5 2 0 0 2 2 2 0 Plasmid conjugative transfer protein PilI | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:56708-60628 Augustus predicted protein sequence Tomato scaffold2599_contigs=27~56708-60628 DNA_pol_phi PF04931.8 g70923.t1 - 0.025 12.3 6.6 0.033 11.9 4.6 1.1 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold2353_contigs=10, transcript_loc=scaffold2353_contigs=10:90118-90621 Augustus predicted protein sequence Tomato scaffold2353_contigs=10~90118-90621 IFP_35_N PF07334.8 g11179.t1 - 0.048 13.6 0.3 0.1 12.5 0.2 1.6 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:8674-9625 Augustus predicted protein sequence Tomato scaffold519_contigs=1~8674-9625 U-box PF04564.10 g87916.t1 - 0.092 12.7 0 0.13 12.2 0 1.2 1 0 0 1 1 1 0 U-box domain | Ref_seq=scaffold4853_contigs=1, transcript_loc=scaffold4853_contigs=1:130-496 Augustus predicted protein sequence Tomato scaffold4853_contigs=1~130-496 Sigma70_ner PF04546.8 g50133.t1 - 0.0055 16.3 1 0.006 16.2 0.7 1.1 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:371073-371324 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~371073-371324 PEARLI-4 PF05278.7 g26678.t1 - 0.000026 23.7 5.1 0.000042 23 3.5 1.2 1 0 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:72342-80872 Augustus predicted protein sequence Tomato scaffold957_contigs=5~72342-80872 zf-CCHC PF00098.18 g64000.t1 - 0.0062 16.4 3.6 0.0097 15.7 2.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:21875-22236 Augustus predicted protein sequence Tomato scaffold2049_contigs=3~21875-22236 DUF4140 PF13600.1 g23984.t1 - 0.017 15.5 2.2 0.021 15.2 1.5 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:15861-16211 Augustus predicted protein sequence Tomato scaffold875_contigs=10~15861-16211 PYRIN PF02758.11 g79291.t1 - 0.015 14.9 0.4 0.024 14.3 0.3 1.4 1 0 0 1 1 1 0 PAAD/DAPIN/Pyrin domain | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:189174-189449 Augustus predicted protein sequence Tomato scaffold2689_contigs=12~189174-189449 PROL5-SMR PF15621.1 g25463.t1 - 6.7 7.1 10.5 3.1 8.2 3.2 2.1 2 0 0 2 2 2 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:324509-326166 Augustus predicted protein sequence Tomato scaffold928_contigs=4~324509-326166 Trypan_PARP PF05887.6 g63730.t1 - 0.036 13.8 9.2 0.058 13.2 6.4 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:704-3464 Augustus predicted protein sequence Tomato scaffold2043_contigs=7~704-3464 FH2 PF02181.18 g39999.t1 - 0.023 13.5 0 0.028 13.3 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:70145-70926 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~70145-70926 HflK_N PF12221.3 g45265.t1 - 0.097 12.4 0.4 0.17 11.6 0.3 1.3 1 0 0 1 1 1 0 Bacterial membrane protein N terminal | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:566493-568067 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~566493-568067 VPEP PF07589.6 g7175.t1 - 1.4 8.9 4.5 0.3 11 0.5 1.9 2 0 0 2 2 2 0 PEP-CTERM motif | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:324704-325183 Augustus predicted protein sequence Tomato scaffold387_contigs=7~324704-325183 MARCKS PF02063.12 g82490.t1 - 0.33 10.7 16 0.43 10.3 11.1 1.1 1 0 0 1 1 1 0 MARCKS family | Ref_seq=scaffold2744_contigs=5, transcript_loc=scaffold2744_contigs=5:86331-87059 Augustus predicted protein sequence Tomato scaffold2744_contigs=5~86331-87059 DBD_Tnp_Mut PF03108.10 g18649.t1 - 0.00000012 31.1 0.1 0.00000021 30.4 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:64916-68234 Augustus predicted protein sequence Tomato scaffold731_contigs=13~64916-68234 DUF673 PF05054.7 g65513.t1 - 0.1 11.1 0.1 0.11 11 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF673) | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:34456-34680 Augustus predicted protein sequence Tomato scaffold2130_contigs=1~34456-34680 YdjO PF14169.1 g3578.t1 - 0.01 15.2 0.1 0.025 14 0 1.6 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:80651-82945 Augustus predicted protein sequence Tomato scaffold278_contigs=5~80651-82945 DUF4568 PF15132.1 g30083.t1 - 0.033 13.3 0.3 0.18 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4568) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:470956-471513 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~470956-471513 Bot1p PF12298.3 g59655.t1 - 0.12 12.2 0.3 16 5.3 0 2.2 2 0 0 2 2 2 0 Eukaryotic mitochondrial regulator protein | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:58319-63888 Augustus predicted protein sequence Tomato scaffold1930_contigs=25~58319-63888 Lactamase_B_4 PF13691.1 g39802.t1 - 0.018 14.5 0 0.032 13.7 0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:297686-298030 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~297686-298030 CDK5_activator PF03261.10 g87876.t1 - 0.15 11.3 1.2 0.17 11.1 0.8 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase 5 activator protein | Ref_seq=scaffold4647_contigs=1, transcript_loc=scaffold4647_contigs=1:1-447 Augustus predicted protein sequence Tomato scaffold4647_contigs=1~1-447 DUF3738 PF12543.3 g28018.t1 - 0.04 13.4 0.9 0.075 12.5 0.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3738) | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:949-2041 Augustus predicted protein sequence Tomato scaffold990_contigs=6~949-2041 GRP PF07172.6 g46546.t1 - 0.00000022 31.2 40.5 0.0000004 30.4 27.4 1.9 2 1 0 2 2 2 1 Glycine rich protein family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:401069-404992 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~401069-404992 DUF2215 PF10225.4 g47883.t1 - 0.0035 16.8 1.2 0.0039 16.6 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:3787-4239 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~3787-4239 DUF2264 PF10022.4 g41241.t1 - 0.005 15.5 0.2 0.006 15.2 0.2 1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:69347-69757 Augustus predicted protein sequence Tomato scaffold1328_contigs=9~69347-69757 DUF2457 PF10446.4 g9346.t1 - 0.18 10.4 9.2 0.25 10 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:28583-29997 Augustus predicted protein sequence Tomato scaffold455_contigs=9~28583-29997 DUF2680 PF10925.3 g48216.t1 - 0.016 15 0.3 0.04 13.7 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:13044-15424 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~13044-15424 DUF4283 PF14111.1 g72512.t1 - 0.000028 23.2 0 0.000039 22.7 0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:22873-23184 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~22873-23184 RNase_H2-Ydr279 PF09468.5 g26249.t1 - 0.00003 23.3 12.7 0.00003 23.3 8.8 1.6 2 0 0 2 2 2 1 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:295512-296790 Augustus predicted protein sequence Tomato scaffold945_contigs=10~295512-296790 Cir_N PF10197.4 g52795.t1 - 0.016 15.2 0 0.035 14.1 0 1.5 1 0 0 1 1 1 0 N-terminal domain of CBF1 interacting co-repressor CIR | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:7410-8002 Augustus predicted protein sequence Tomato scaffold1648_contigs=6~7410-8002 FCP1_C PF09309.5 g43389.t1 - 0.13 11.5 6.3 0.13 11.5 4.4 1 1 0 0 1 1 1 0 FCP1, C-terminal | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:324257-324487 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~324257-324487 NPV_P10 PF05531.7 g33040.t1 - 0.045 13.9 0.1 0.059 13.6 0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:107002-107289 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~107002-107289 CK2S PF15011.1 g83308.t1 - 0.052 13.3 0.2 0.13 12 0 1.6 2 0 0 2 2 2 0 Casein Kinase 2 substrate | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:14887-16237 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~14887-16237 E2_bind PF08825.5 g70314.t1 - 0.02 14.6 0 0.035 13.8 0 1.3 1 0 0 1 1 1 0 E2 binding domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:454379-455306 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~454379-455306 Daxx PF03344.10 g36635.t1 - 0.013 13.9 8.5 0.014 13.9 5.9 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:168873-169442 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~168873-169442 7kD_coat PF02495.12 g70365.t1 - 0.51 9.8 2.5 1.1 8.6 1.7 1.6 1 0 0 1 1 1 0 7kD viral coat protein | Ref_seq=scaffold2338_contigs=16, transcript_loc=scaffold2338_contigs=16:38105-39070 Augustus predicted protein sequence Tomato scaffold2338_contigs=16~38105-39070 Myc_N PF01056.13 g81642.t1 - 0.26 10.3 12.8 0.32 10.1 8.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:343005-343406 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~343005-343406 Gb3_synth PF04572.7 g630.t1 - 0.057 13.1 0.4 1.4 8.5 0.3 2.6 1 1 1 2 2 2 0 Alpha 1,4-glycosyltransferase conserved region | Ref_seq=scaffold67_contigs=4, transcript_loc=scaffold67_contigs=4:32587-32922 Augustus predicted protein sequence Tomato scaffold67_contigs=4~32587-32922 Neisseria_TspB PF05616.8 g28361.t1 - 0.57 8.4 5.1 0.78 8 3.5 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:3290-6084 Augustus predicted protein sequence Tomato scaffold999_contigs=6~3290-6084 DUF3073 PF11273.3 g80884.t1 - 0.022 15.3 0.4 0.041 14.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:190676-191519 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~190676-191519 APG6 PF04111.7 g80826.t1 - 0.068 12.2 4.4 0.11 11.4 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:502694-503492 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~502694-503492 CENP-F_leu_zip PF10473.4 g82318.t1 - 0.0016 18.3 0.1 0.002 17.9 0.1 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:143553-144223 Augustus predicted protein sequence Tomato scaffold2741_contigs=6~143553-144223 HAUS4 PF14735.1 g43382.t1 - 0.011 15 4.2 0.014 14.7 2.9 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:294929-295357 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~294929-295357 DUF4232 PF14016.1 g70876.t1 - 0.0013 18.4 2.6 0.44 10.2 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF4232) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:409374-410010 Augustus predicted protein sequence Tomato scaffold2350_contigs=15~409374-410010 VID27 PF08553.5 g33863.t1 - 6.3 4.8 6 7.7 4.5 4.2 1 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:237690-238325 Augustus predicted protein sequence Tomato scaffold1136_contigs=7~237690-238325 zf-BED PF02892.10 g26994.t1 - 0.000006 25.9 6.2 0.031 14 0.1 2.8 2 1 0 2 2 2 2 BED zinc finger | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:148583-149466 Augustus predicted protein sequence Tomato scaffold965_contigs=10~148583-149466 Peptidase_S46 PF10459.4 g47310.t1 - 0.026 12.9 2.7 0.033 12.6 1.9 1.1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:119481-120423 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~119481-120423 Med21 PF11221.3 g63646.t1 - 0.027 14.4 2.5 0.038 13.9 1.8 1.2 1 0 0 1 1 1 0 Subunit 21 of Mediator complex | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:894491-895296 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~894491-895296 MGC-24 PF05283.6 g19212.t1 - 0.042 13.6 0.1 0.046 13.4 0.1 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:106207-106751 Augustus predicted protein sequence Tomato scaffold748_contigs=11~106207-106751 7TMR-DISM_7TM PF07695.6 g45233.t1 - 0.51 9.9 10 0.043 13.4 1.7 2.2 2 0 0 2 2 2 0 7TM diverse intracellular signalling | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:478733-479961 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~478733-479961 Jag_N PF14804.1 g42466.t1 - 0.03 14.3 0 0.045 13.7 0 1.2 1 0 0 1 1 1 0 Jag N-terminus | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:657480-657704 Augustus predicted protein sequence Tomato scaffold1357_contigs=25~657480-657704 PRP3 PF08572.5 g54640.t1 - 0.06 12.7 0.1 0.08 12.3 0.1 1.1 1 0 0 1 1 1 0 pre-mRNA processing factor 3 (PRP3) | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:11775-12650 Augustus predicted protein sequence Tomato scaffold1725_contigs=3~11775-12650 SWIM PF04434.12 g8441.t1 - 0.081 12.4 4.1 0.51 9.8 0 2.3 1 1 1 2 2 2 0 SWIM zinc finger | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:215473-216906 Augustus predicted protein sequence Tomato scaffold426_contigs=7~215473-216906 Cytokin-bind PF09265.5 g949.t1 - 0.19 10.8 1.5 0.24 10.5 1 1.1 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:96054-96344 Augustus predicted protein sequence Tomato scaffold182_contigs=2~96054-96344 Asp-B-Hydro_N PF05279.6 g2288.t1 - 0.039 13.7 3.7 0.047 13.5 2.6 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:29869-30261 Augustus predicted protein sequence Tomato scaffold234_contigs=2~29869-30261 Inhibitor_I29 PF08246.7 g86795.t1 - 0.083 13.1 0.1 0.18 12 0 1.6 1 0 0 1 1 1 0 Cathepsin propeptide inhibitor domain (I29) | Ref_seq=scaffold2894_contigs=1, transcript_loc=scaffold2894_contigs=1:1823-3132 Augustus predicted protein sequence Tomato scaffold2894_contigs=1~1823-3132 Cytochrom_B559a PF00284.15 g67290.t1 - 0.58 9.7 2.7 1.3 8.6 1.9 1.5 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:64405-64938 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~64405-64938 ATG_C PF09333.6 g73594.t1 - 0.096 12.8 0 0.13 12.3 0 1.2 1 0 0 1 1 1 0 ATG C terminal domain | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:169919-170191 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~169919-170191 DivIC PF04977.10 g2243.t1 - 0.086 12.3 0.1 4.2 6.9 0 2.3 2 0 0 2 2 2 0 Septum formation initiator | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:78631-82535 Augustus predicted protein sequence Tomato scaffold230_contigs=2~78631-82535 DUF3099 PF11298.3 g81253.t1 - 0.75 9.5 3.1 18 5.1 0 3 2 1 1 3 3 3 0 Protein of unknown function (DUF3099) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:99709-100296 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~99709-100296 CobS PF02654.10 g44198.t1 - 0.17 11.4 1 36 3.8 0 3 2 1 1 3 3 3 0 Cobalamin-5-phosphate synthase | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:70899-72774 Augustus predicted protein sequence Tomato scaffold1415_contigs=17~70899-72774 zf-C4pol PF14260.1 g75518.t1 - 0.015 15.3 0.1 5.1 7.1 0 2.1 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:80759-81213 Augustus predicted protein sequence Tomato scaffold2599_contigs=27~80759-81213 Remorin_N PF03766.8 g64707.t1 - 0.081 12.7 1.2 0.12 12.1 0.8 1.3 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:40192-40790 Augustus predicted protein sequence Tomato scaffold2090_contigs=6~40192-40790 NESP55 PF06390.7 g49932.t1 - 0.078 12.3 5.5 0.13 11.5 3.8 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:652408-653128 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~652408-653128 DUF4610 PF15384.1 g86493.t1 - 0.15 11.5 3.4 4.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4610) | Ref_seq=scaffold2866_contigs=1, transcript_loc=scaffold2866_contigs=1:41035-42344 Augustus predicted protein sequence Tomato scaffold2866_contigs=1~41035-42344 LZ_Tnp_IS66 PF13007.2 g10087.t1 - 0.22 12.1 1.8 0.38 11.4 1.3 1.4 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:225808-226695 Augustus predicted protein sequence Tomato scaffold482_contigs=7~225808-226695 DUF751 PF05421.6 g69624.t1 - 0.18 12.1 2.7 0.24 11.7 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF751) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:357177-357650 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~357177-357650 CENP-F_leu_zip PF10473.4 g39790.t1 - 0.015 15.1 7.7 0.023 14.5 5.3 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:269248-273396 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~269248-273396 Gly-rich_Ago1 PF12764.2 g87650.t1 - 0.2 12.3 1.6 0.27 11.8 1.1 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold3542_contigs=1, transcript_loc=scaffold3542_contigs=1:1019-1243 Augustus predicted protein sequence Tomato scaffold3542_contigs=1~1019-1243 DUF972 PF06156.8 g50098.t1 - 0.15 12.4 1.9 0.27 11.6 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:224161-224895 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~224161-224895 SlyX PF04102.7 g17685.t1 - 0.00073 19.8 0 0.00085 19.6 0 1.2 1 0 0 1 1 1 1 SlyX | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:154863-155165 Augustus predicted protein sequence Tomato scaffold713_contigs=10~154863-155165 DAZAP2 PF11029.3 g75449.t1 - 0.022 15.2 0 0.028 14.8 0 1.2 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:28779-29501 Augustus predicted protein sequence Tomato scaffold2597_contigs=14~28779-29501 MAGP PF05507.6 g55342.t1 - 0.21 11.3 0.8 0.25 11.1 0.5 1.1 1 0 0 1 1 1 0 Microfibril-associated glycoprotein (MAGP) | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:38936-39564 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~38936-39564 Arena_glycoprot PF00798.13 g30049.t1 - 0.088 11.1 1.1 0.1 10.9 0.7 1 1 0 0 1 1 1 0 Arenavirus glycoprotein | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:354428-355107 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~354428-355107 CAF-1_p150 PF11600.3 g55351.t1 - 7.5 5.8 39.3 8.2 5.7 27.2 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:69974-70192 Augustus predicted protein sequence Tomato scaffold1741_contigs=2~69974-70192 Flu_NP PF00506.13 g59550.t1 - 0.014 13.9 0.6 0.015 13.7 0.4 1 1 0 0 1 1 1 0 Influenza virus nucleoprotein | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:190095-190340 Augustus predicted protein sequence Tomato scaffold1926_contigs=8~190095-190340 MscS_porin PF12795.2 g81620.t1 - 0.00068 19 6.2 0.00096 18.5 4.3 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:287563-288443 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~287563-288443 Nnf1 PF03980.9 g78352.t1 - 0.086 12.8 5.5 0.87 9.6 1.1 3 1 1 2 3 3 3 0 Nnf1 | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:288380-290082 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~288380-290082 eIF3g PF12353.3 g15508.t1 - 0.00066 19.5 0.2 0.00083 19.2 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:17102-17431 Augustus predicted protein sequence Tomato scaffold631_contigs=3~17102-17431 NAM-associated PF14303.1 g4002.t1 - 0.0062 16.8 1 0.0076 16.5 0.7 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold285_contigs=5, transcript_loc=scaffold285_contigs=5:120186-120521 Augustus predicted protein sequence Tomato scaffold285_contigs=5~120186-120521 MYT1 PF08474.6 g49844.t1 - 0.11 11.9 1.3 0.12 11.8 0.1 1.5 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:410705-414134 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~410705-414134 Ala_racemase_N PF01168.15 g50952.t1 - 0.0036 16.9 0.6 0.0046 16.5 0.4 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain | Ref_seq=scaffold1590_contigs=1, transcript_loc=scaffold1590_contigs=1:26373-28039 Augustus predicted protein sequence Tomato scaffold1590_contigs=1~26373-28039 Pribosyltran_N PF13793.1 g45.t1 - 0.0016 18.1 0.1 0.0029 17.3 0.1 1.4 1 1 0 1 1 1 1 N-terminal domain of ribose phosphate pyrophosphokinase | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:22606-23552 Augustus predicted protein sequence Tomato scaffold3_contigs=2~22606-23552 AKAP28 PF14469.1 g26156.t1 - 0.09 12.3 0.2 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 28 kDa A-kinase anchor | Ref_seq=scaffold944_contigs=5, transcript_loc=scaffold944_contigs=5:88495-88749 Augustus predicted protein sequence Tomato scaffold944_contigs=5~88495-88749 zf-CCHC PF00098.18 g67908.t1 - 0.00018 21.2 2.4 0.00033 20.4 1.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:213918-214316 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~213918-214316 DUF2360 PF10152.4 g10958.t1 - 5.5 7.2 7.4 11 6.2 5.1 1.5 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:54601-54975 Augustus predicted protein sequence Tomato scaffold510_contigs=5~54601-54975 NAM-associated PF14303.1 g8905.t1 - 0.00011 22.5 3.4 0.00012 22.3 2.3 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:250250-250510 Augustus predicted protein sequence Tomato scaffold442_contigs=14~250250-250510 zf-CCHC PF00098.18 g6397.t1 - 0.069 13.1 5.2 0.15 12 3.6 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold366_contigs=3, transcript_loc=scaffold366_contigs=3:91198-93247 Augustus predicted protein sequence Tomato scaffold366_contigs=3~91198-93247 CcdA PF07362.7 g65471.t1 - 0.14 12 0.2 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:151966-152208 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~151966-152208 Trypan_PARP PF05887.6 g72438.t1 - 0.88 9.3 10.5 0.91 9.3 7.3 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:57371-57604 Augustus predicted protein sequence Tomato scaffold2394_contigs=12~57371-57604 PAP_assoc PF03828.14 g1706.t1 - 1.2 9.1 4.2 0.24 11.3 0.6 1.7 2 1 0 2 2 2 0 Cid1 family poly A polymerase | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:196010-196258 Augustus predicted protein sequence Tomato scaffold213_contigs=5~196010-196258 Bombolitin PF08096.6 g53022.t1 - 0.14 12.2 1.2 0.16 12 0.1 1.8 2 0 0 2 2 2 0 Bombolitin family | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:90041-90421 Augustus predicted protein sequence Tomato scaffold1672_contigs=4~90041-90421 PMD PF10536.4 g47792.t1 - 0.0000024 26.7 0 0.0000039 26 0 1.3 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:89411-91708 Augustus predicted protein sequence Tomato scaffold1499_contigs=18~89411-91708 CofC PF01983.11 g19028.t1 - 0.056 12.3 0.7 0.11 11.3 0.5 1.5 1 1 1 2 2 2 0 Guanylyl transferase CofC like | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:28500-29166 Augustus predicted protein sequence Tomato scaffold743_contigs=3~28500-29166 FLYWCH PF04500.11 g48543.t1 - 1.6 8.6 8.8 2 8.3 1.3 2.3 1 1 1 2 2 2 0 FLYWCH zinc finger domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:247362-247955 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~247362-247955 FAM176 PF14851.1 g71778.t1 - 2.6 7.7 5.2 3.2 7.4 3.6 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:205492-205875 Augustus predicted protein sequence Tomato scaffold2373_contigs=10~205492-205875 DUF1840 PF08895.6 g27042.t1 - 0.19 11.7 1.2 0.37 10.8 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1840) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:334662-335141 Augustus predicted protein sequence Tomato scaffold965_contigs=10~334662-335141 VIT1 PF01988.14 g63484.t1 - 0.037 13.5 5.6 0.053 13 3.9 1.1 1 0 0 1 1 1 0 VIT family | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:114786-115184 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~114786-115184 Transposase_28 PF04195.7 g38691.t1 - 0.095 11.9 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:44709-45002 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~44709-45002 Folate_carrier PF01770.13 g62947.t1 - 0.047 12.2 0.6 0.05 12.1 0.4 1 1 0 0 1 1 1 0 Reduced folate carrier | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:143472-143884 Augustus predicted protein sequence Tomato scaffold2015_contigs=7~143472-143884 CTK3_C PF12350.3 g22023.t1 - 0.088 12.8 0.3 0.31 11 0 2 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 C-terminus | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:633191-633634 Augustus predicted protein sequence Tomato scaffold817_contigs=11~633191-633634 DUF3088 PF11287.3 g45640.t1 - 0.0099 15.3 0.1 0.013 15 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3088) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:161433-161922 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~161433-161922 DUF4219 PF13961.1 g77604.t1 - 0.023 14.1 0.1 0.049 13 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:140528-142005 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~140528-142005 SMN PF06003.7 g1656.t1 - 0.16 11 0.8 0.18 10.8 0.5 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:75061-75641 Augustus predicted protein sequence Tomato scaffold213_contigs=5~75061-75641 ARA70 PF12489.3 g8581.t1 - 0.038 13.9 4.5 0.064 13.2 3.1 1.5 1 1 0 1 1 1 0 Nuclear coactivator | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:73332-73646 Augustus predicted protein sequence Tomato scaffold429_contigs=9~73332-73646 Herpes_UL6 PF01763.11 g51003.t1 - 0.055 11.6 0.5 0.051 11.7 0.3 1 1 0 0 1 1 1 0 Herpesvirus UL6 like | Ref_seq=scaffold1603_contigs=1, transcript_loc=scaffold1603_contigs=1:44154-44438 Augustus predicted protein sequence Tomato scaffold1603_contigs=1~44154-44438 Roughex PF06020.6 g43932.t1 - 0.066 11.8 0.3 0.072 11.7 0.2 1.1 1 0 0 1 1 1 0 Drosophila roughex protein | Ref_seq=scaffold1396_contigs=6, transcript_loc=scaffold1396_contigs=6:54833-55273 Augustus predicted protein sequence Tomato scaffold1396_contigs=6~54833-55273 DUF4584 PF15223.1 g36630.t1 - 0.076 12.2 0.6 0.096 11.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4584) | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:156411-157510 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~156411-157510 FlxA PF14282.1 g46509.t1 - 0.065 13.1 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:309769-310179 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~309769-310179 PBP1_TM PF14812.1 g44617.t1 - 9.8 6.5 10.4 120 3 7.2 2.1 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1435_contigs=2, transcript_loc=scaffold1435_contigs=2:23893-27591 Augustus predicted protein sequence Tomato scaffold1435_contigs=2~23893-27591 DUF3974 PF13120.1 g65919.t1 - 0.064 13 0.2 12 5.7 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3974) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:156364-159808 Augustus predicted protein sequence Tomato scaffold2145_contigs=33~156364-159808 Myb_Cef PF11831.3 g7700.t1 - 0.017 14.3 0.2 0.022 13.9 0.1 1.1 1 0 0 1 1 1 0 pre-mRNA splicing factor component | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:732-1248 Augustus predicted protein sequence Tomato scaffold406_contigs=8~732-1248 7TMR-HDED PF07697.6 g45566.t1 - 0.018 14.8 0.3 0.025 14.3 0.2 1.2 1 0 0 1 1 1 0 7TM-HD extracellular | Ref_seq=scaffold1451_contigs=1, transcript_loc=scaffold1451_contigs=1:71742-72149 Augustus predicted protein sequence Tomato scaffold1451_contigs=1~71742-72149 M-factor PF03855.8 g66889.t1 - 0.16 12 0.8 0.36 10.8 0.2 1.8 2 0 0 2 2 2 0 M-factor | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:119099-125259 Augustus predicted protein sequence Tomato scaffold2172_contigs=4~119099-125259 DUF2587 PF10759.4 g52974.t1 - 0.019 14.3 1.1 0.032 13.6 0.6 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2587) | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:64187-65247 Augustus predicted protein sequence Tomato scaffold1667_contigs=5~64187-65247 Seryl_tRNA_N PF02403.17 g86630.t1 - 0.033 14.2 4.3 0.043 13.8 3 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2878_contigs=1, transcript_loc=scaffold2878_contigs=1:2219-2542 Augustus predicted protein sequence Tomato scaffold2878_contigs=1~2219-2542 DDHD PF02862.12 g48076.t1 - 0.66 9.7 3.9 0.72 9.6 2.7 1.2 1 0 0 1 1 1 0 DDHD domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:568535-569438 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~568535-569438 LSPR PF06049.7 g76212.t1 - 0.71 9.5 4.3 22 5 0.2 2.9 2 0 0 2 2 2 0 Coagulation Factor V LSPD Repeat | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:211827-215383 Augustus predicted protein sequence Tomato scaffold2619_contigs=18~211827-215383 Daxx PF03344.10 g4143.t1 - 0.007 14.9 13.8 0.0087 14.6 9.6 1.1 1 0 0 1 1 1 1 Daxx Family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:116329-119437 Augustus predicted protein sequence Tomato scaffold293_contigs=5~116329-119437 RVT_3 PF13456.1 g37608.t1 - 0.0008 19.1 0 0.00093 18.9 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1223_contigs=14, transcript_loc=scaffold1223_contigs=14:3141-3398 Augustus predicted protein sequence Tomato scaffold1223_contigs=14~3141-3398 zf-CCHC PF00098.18 g30073.t1 - 0.074 13 2.8 0.12 12.3 1.9 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:431693-435408 Augustus predicted protein sequence Tomato scaffold1037_contigs=11~431693-435408 Transposase_28 PF04195.7 g43871.t1 - 0.025 13.9 0.9 0.041 13.1 0.7 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:180027-188528 Augustus predicted protein sequence Tomato scaffold1393_contigs=3~180027-188528 DUF972 PF06156.8 g40623.t1 - 0.026 14.8 0.4 8.3 6.8 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:23194-24079 Augustus predicted protein sequence Tomato scaffold1304_contigs=4~23194-24079 PspA_IM30 PF04012.7 g55016.t1 - 0.073 12.4 0 0.087 12.1 0 1 1 0 0 1 1 1 0 PspA/IM30 family | Ref_seq=scaffold1734_contigs=1, transcript_loc=scaffold1734_contigs=1:35134-35970 Augustus predicted protein sequence Tomato scaffold1734_contigs=1~35134-35970 XH PF03469.9 g63642.t1 - 0.098 12.3 0.2 0.12 12 0.2 1.1 1 0 0 1 1 1 0 XH domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:857971-859478 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~857971-859478 DUF2385 PF09539.5 g36586.t1 - 0.022 15.1 0.1 0.045 14.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:22840-27059 Augustus predicted protein sequence Tomato scaffold1205_contigs=6~22840-27059 HTH_18 PF12833.2 g3164.t1 - 0.084 12.9 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:21506-23369 Augustus predicted protein sequence Tomato scaffold261_contigs=2~21506-23369 PAT1 PF09770.4 g57878.t1 - 3.2 5.8 9.9 3.7 5.6 6.8 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:189705-190367 Augustus predicted protein sequence Tomato scaffold1840_contigs=10~189705-190367 AAA_18 PF13238.1 g30572.t1 - 0.0053 17 0.2 0.0062 16.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:183683-185262 Augustus predicted protein sequence Tomato scaffold1045_contigs=9~183683-185262 DUF1206 PF06724.6 g87474.t1 - 0.0042 16.7 0 0.051 13.3 0 2.1 2 0 0 2 2 2 1 Domain of Unknown Function (DUF1206) | Ref_seq=scaffold3128_contigs=1, transcript_loc=scaffold3128_contigs=1:209-1463 Augustus predicted protein sequence Tomato scaffold3128_contigs=1~209-1463 DUF755 PF05501.6 g43458.t1 - 0.24 11.4 8.7 0.67 10 6.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:150172-151411 Augustus predicted protein sequence Tomato scaffold1386_contigs=4~150172-151411 TraU PF06834.6 g64986.t1 - 0.0092 15.1 0.2 0.012 14.7 0.2 1 1 0 0 1 1 1 1 TraU protein | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:176745-177718 Augustus predicted protein sequence Tomato scaffold2105_contigs=7~176745-177718 Flavi_NS4A PF01350.12 g4148.t1 - 0.031 13.8 0 0.042 13.4 0 1.1 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:136434-137435 Augustus predicted protein sequence Tomato scaffold293_contigs=5~136434-137435 Lipase3_N PF03893.11 g28130.t1 - 0.058 13.2 0 0.087 12.6 0 1.2 1 0 0 1 1 1 0 Lipase 3 N-terminal region | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:67139-68070 Augustus predicted protein sequence Tomato scaffold992_contigs=3~67139-68070 DDRGK PF09756.4 g52130.t1 - 0.54 9.6 32.5 0.61 9.4 22.5 1 1 0 0 1 1 1 0 DDRGK domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:130365-130643 Augustus predicted protein sequence Tomato scaffold1630_contigs=40~130365-130643 DUF4172 PF13776.1 g65588.t1 - 0.05 13.7 0.4 0.1 12.7 0.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:53829-54122 Augustus predicted protein sequence Tomato scaffold2134_contigs=5~53829-54122 Retrotrans_gag PF03732.12 g2011.t1 - 0.0013 18.7 0 0.0023 17.9 0 1.4 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:86849-91400 Augustus predicted protein sequence Tomato scaffold223_contigs=4~86849-91400 2OG-FeII_Oxy_4 PF13661.1 g41446.t1 - 0.097 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:30022-31334 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~30022-31334 tRNA_lig_CPD PF08302.6 g80847.t1 - 0.052 12.7 0 0.053 12.7 0 1.1 1 0 0 1 1 1 0 Fungal tRNA ligase phosphodiesterase domain | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:72040-72360 Augustus predicted protein sequence Tomato scaffold2719_contigs=8~72040-72360 TOBE PF03459.12 g64143.t1 - 0.39 10.8 4.8 9.5 6.4 0.1 3.9 2 1 1 3 3 3 0 TOBE domain | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:236349-236910 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~236349-236910 DUF1777 PF08648.7 g48235.t1 - 9.9 5.8 19.8 12 5.6 13.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1777) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:66634-66870 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~66634-66870 DUF4355 PF14265.1 g1767.t1 - 0.23 11.4 8 0.071 13 3.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4355) | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:68075-68554 Augustus predicted protein sequence Tomato scaffold215_contigs=2~68075-68554 DUF504 PF04457.7 g23723.t1 - 0.085 13 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF504) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:134446-136517 Augustus predicted protein sequence Tomato scaffold865_contigs=7~134446-136517 DUF4088 PF13317.1 g1548.t1 - 0.039 13.3 0 0.043 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) | Ref_seq=scaffold208_contigs=2, transcript_loc=scaffold208_contigs=2:24255-24826 Augustus predicted protein sequence Tomato scaffold208_contigs=2~24255-24826 Toxin_67 PF15545.1 g73382.t1 - 0.12 12.2 0 0.19 11.6 0 1.2 1 0 0 1 1 1 0 Putative toxin 67 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:364551-365844 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~364551-365844 GSK-3_bind PF05350.7 g16067.t1 - 0.16 11.3 3.5 0.18 11.1 2.4 1 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:197479-197796 Augustus predicted protein sequence Tomato scaffold654_contigs=10~197479-197796 KfrA_N PF11740.3 g25554.t1 - 9.2 6.7 7.2 0.39 11.1 0.8 1.7 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:210314-215141 Augustus predicted protein sequence Tomato scaffold929_contigs=9~210314-215141 zf-CCHC_3 PF13917.1 g24961.t1 - 0.0045 16.6 1.7 0.0096 15.6 1.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:87362-89089 Augustus predicted protein sequence Tomato scaffold907_contigs=7~87362-89089 DUF591 PF04569.9 g33695.t1 - 1.7 8.7 15.7 0.9 9.6 3.2 2.2 1 1 1 2 2 2 0 Protein of unknown function | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:26430-27028 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~26430-27028 TetR PF13972.1 g45118.t1 - 0.042 13.2 0.1 0.054 12.9 0 1.2 1 0 0 1 1 1 0 Bacterial transcriptional repressor | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:41551-41901 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~41551-41901 DUF1985 PF09331.6 g6618.t1 - 0.000068 22.7 0 0.00011 22 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:232971-234884 Augustus predicted protein sequence Tomato scaffold379_contigs=8~232971-234884 PEP-utilisers_N PF05524.8 g17811.t1 - 0.013 15.2 3.9 0.075 12.8 2.7 1.9 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:30957-32193 Augustus predicted protein sequence Tomato scaffold715_contigs=2~30957-32193 RVT_3 PF13456.1 g77619.t1 - 0.000017 24.5 0.5 0.000061 22.7 0.3 1.8 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:182477-182821 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~182477-182821 HTH_8 PF02954.14 g70321.t1 - 0.12 11.9 0.3 0.4 10.2 0.1 2.1 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:494369-495214 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~494369-495214 Mhr1 PF12829.2 g86871.t1 - 0.017 14.9 0 0.028 14.2 0 1.4 1 0 0 1 1 1 0 Transcriptional regulation of mitochondrial recombination | Ref_seq=scaffold2903_contigs=1, transcript_loc=scaffold2903_contigs=1:28163-28576 Augustus predicted protein sequence Tomato scaffold2903_contigs=1~28163-28576 RVT_3 PF13456.1 g82077.t1 - 0.00018 21.2 1.4 0.027 14.2 0.1 2.2 1 1 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:89788-90257 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~89788-90257 DUF2250 PF10007.4 g78345.t1 - 0.0007 19.4 0.4 0.48 10.3 0 2.4 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:265703-266766 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~265703-266766 zf-CCHC PF00098.18 g21407.t1 - 0.0023 17.7 0.8 0.0023 17.7 0.5 2.1 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:151430-152524 Augustus predicted protein sequence Tomato scaffold798_contigs=6~151430-152524 Myc_N PF01056.13 g6541.t1 - 0.012 14.8 0.3 0.015 14.5 0.2 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:87152-88861 Augustus predicted protein sequence Tomato scaffold378_contigs=5~87152-88861 DUF2894 PF11445.3 g81651.t1 - 2.7 8.2 6.7 5 7.3 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:387726-389248 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~387726-389248 Phage_integrase PF00589.17 g87611.t1 - 0.12 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:3381-3725 Augustus predicted protein sequence Tomato scaffold3413_contigs=1~3381-3725 LRRNT PF01462.13 g71040.t1 - 4.1 6.9 7.9 1.1 8.8 0.2 2.2 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:566180-566398 Augustus predicted protein sequence Tomato scaffold2354_contigs=18~566180-566398 YusW PF14039.1 g85512.t1 - 8.8 6.6 13.8 7.3 6.9 4 2.1 2 0 0 2 2 2 0 YusW-like protein | Ref_seq=scaffold2807_contigs=1, transcript_loc=scaffold2807_contigs=1:20073-20476 Augustus predicted protein sequence Tomato scaffold2807_contigs=1~20073-20476 DUF1830 PF08865.6 g73638.t1 - 0.0028 17.2 0.1 15 5.3 0 3.2 3 0 0 3 3 3 3 Domain of unknown function (DUF1830) | Ref_seq=scaffold2486_contigs=8, transcript_loc=scaffold2486_contigs=8:9285-10186 Augustus predicted protein sequence Tomato scaffold2486_contigs=8~9285-10186 IFP_35_N PF07334.8 g32473.t1 - 0.034 14.1 0.5 0.099 12.6 0.4 1.7 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:429981-430708 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~429981-430708 DUF1221 PF06760.6 g58778.t1 - 0.056 12.6 0 0.075 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1221) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:185471-187617 Augustus predicted protein sequence Tomato scaffold1876_contigs=18~185471-187617 RecR PF02132.10 g45465.t1 - 0.15 11.5 1.1 0.25 10.8 0.2 1.8 2 1 0 2 2 2 0 RecR protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:330563-330844 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~330563-330844 DUF1409 PF07197.7 g84004.t1 - 0.0065 16.5 0.1 0.014 15.4 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1409) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:101374-101820 Augustus predicted protein sequence Tomato scaffold2763_contigs=1~101374-101820 DUF2264 PF10022.4 g15304.t1 - 0.012 14.2 0.4 0.016 13.9 0.3 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:70013-71293 Augustus predicted protein sequence Tomato scaffold624_contigs=9~70013-71293 Synthase_beta PF11421.3 g17688.t1 - 4.9 7.8 7.5 5 7.8 2.9 2.2 1 1 1 2 2 2 0 ATP synthase F1 beta subunit | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:156777-157204 Augustus predicted protein sequence Tomato scaffold713_contigs=10~156777-157204 PsbP PF01789.11 g49613.t1 - 0.11 11.8 0 0.2 11 0 1.4 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:155919-156835 Augustus predicted protein sequence Tomato scaffold1542_contigs=5~155919-156835 Cep57_CLD_2 PF14197.1 g16499.t1 - 0.029 14.2 14.6 0.066 13.1 8 2.3 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:61359-64089 Augustus predicted protein sequence Tomato scaffold672_contigs=7~61359-64089 Phage_Treg PF04761.7 g22299.t1 - 0.17 11.6 0.1 0.26 11 0.1 1.3 1 0 0 1 1 1 0 Lactococcus bacteriophage putative transcription regulator | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:404004-406335 Augustus predicted protein sequence Tomato scaffold825_contigs=10~404004-406335 Gal-3-0_sulfotr PF06990.6 g66062.t1 - 0.11 11.1 0 0.12 11 0 1 1 0 0 1 1 1 0 Galactose-3-O-sulfotransferase | Ref_seq=scaffold2147_contigs=12, transcript_loc=scaffold2147_contigs=12:267696-267971 Augustus predicted protein sequence Tomato scaffold2147_contigs=12~267696-267971 zf-CCHC PF00098.18 g42015.t1 - 0.00055 19.7 0.2 0.001 18.8 0.2 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:195332-195826 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~195332-195826 SSI PF00720.12 g60548.t1 - 0.38 10.7 3.5 7.3 6.5 0.3 2.3 1 1 1 2 2 2 0 Subtilisin inhibitor-like | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:203050-203746 Augustus predicted protein sequence Tomato scaffold1954_contigs=4~203050-203746 FoP_duplication PF13865.1 g14823.t1 - 6 7.3 8 12 6.3 5.5 1.5 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:10417-10740 Augustus predicted protein sequence Tomato scaffold607_contigs=8~10417-10740 gag_pre-integrs PF13976.1 g51806.t1 - 0.032 13.8 3.2 0.43 10.2 2.2 2.2 1 1 0 1 1 1 0 GAG-pre-integrase domain | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:15085-15447 Augustus predicted protein sequence Tomato scaffold1624_contigs=2~15085-15447 zf-CCHC PF00098.18 g31576.t1 - 0.000082 22.3 0.7 0.00016 21.4 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1079_contigs=2, transcript_loc=scaffold1079_contigs=2:31072-31944 Augustus predicted protein sequence Tomato scaffold1079_contigs=2~31072-31944 Pox_G7 PF05503.7 g1975.t1 - 0.058 12 0.1 0.07 11.7 0.1 1 1 0 0 1 1 1 0 Poxvirus G7-like | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:86382-86651 Augustus predicted protein sequence Tomato scaffold221_contigs=3~86382-86651 DUF3240 PF11582.3 g40217.t1 - 0.017 15 0.1 20 5.2 0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3240) | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:130517-130990 Augustus predicted protein sequence Tomato scaffold1294_contigs=7~130517-130990 Arc PF03869.9 g76694.t1 - 0.067 12.8 0.5 0.26 10.9 0.1 2 2 0 0 2 2 2 0 Arc-like DNA binding domain | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:366802-367451 Augustus predicted protein sequence Tomato scaffold2638_contigs=15~366802-367451 TFIID-18kDa PF02269.11 g43949.t1 - 0.33 10.7 1.8 0.64 9.8 0.3 2.2 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:61931-63517 Augustus predicted protein sequence Tomato scaffold1397_contigs=9~61931-63517 ATHILA PF03078.10 g75703.t1 - 0.00008 21.4 0 0.000087 21.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:28398-28691 Augustus predicted protein sequence Tomato scaffold2609_contigs=44~28398-28691 Pol_alpha_B_N PF08418.5 g56504.t1 - 0.67 9.4 16.7 0.73 9.3 11.6 1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:55075-55582 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~55075-55582 TRH PF05438.7 g51143.t1 - 0.026 13.9 0.8 0.031 13.6 0.6 1.2 1 0 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:53914-54162 Augustus predicted protein sequence Tomato scaffold1608_contigs=6~53914-54162 Peptidase_C48 PF02902.14 g68469.t1 - 0.000094 22.1 0.2 0.00025 20.7 0.1 1.7 1 1 1 2 2 2 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:325027-326765 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~325027-326765 Imm33 PF15580.1 g77851.t1 - 0.11 12 0.1 0.15 11.5 0 1.2 1 0 0 1 1 1 0 Immunity protein 33 | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:606767-607102 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~606767-607102 Inhibitor_I71 PF12628.2 g40433.t1 - 0.042 13.5 0.4 0.045 13.4 0.3 1.1 1 0 0 1 1 1 0 Falstatin, cysteine peptidase inhibitor | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:194307-194633 Augustus predicted protein sequence Tomato scaffold1300_contigs=11~194307-194633 CbiX PF01903.12 g47294.t1 - 0.15 12.2 0 0.23 11.5 0 1.3 1 0 0 1 1 1 0 CbiX | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:83370-86770 Augustus predicted protein sequence Tomato scaffold1493_contigs=5~83370-86770 GlnD_UR_UTase PF08335.6 g69115.t1 - 0.012 15.4 0 3.8 7.3 0 2.1 1 1 1 2 2 2 0 GlnD PII-uridylyltransferase | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:34551-35227 Augustus predicted protein sequence Tomato scaffold2255_contigs=20~34551-35227 DUF834 PF05754.9 g78677.t1 - 0.091 12.5 0.9 0.18 11.6 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF834) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:43581-43859 Augustus predicted protein sequence Tomato scaffold2674_contigs=11~43581-43859 RecT PF03837.9 g73481.t1 - 0.1 11.8 0.8 0.14 11.4 0.5 1.1 1 0 0 1 1 1 0 RecT family | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:140475-146904 Augustus predicted protein sequence Tomato scaffold2465_contigs=4~140475-146904 Phage_endo_I PF05367.6 g85057.t1 - 0.086 12.2 0 0.12 11.7 0 1.3 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:23843-24238 Augustus predicted protein sequence Tomato scaffold2789_contigs=1~23843-24238 Daxx PF03344.10 g31522.t1 - 0.016 13.6 11.9 0.022 13.3 8.2 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:91925-94627 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~91925-94627 DUF2360 PF10152.4 g28590.t1 - 0.27 11.5 3.5 0.3 11.3 2.4 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:84188-84687 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~84188-84687 Vac_Fusion PF02346.11 g45885.t1 - 0.13 11.7 0 2.8 7.4 0 2.5 3 0 0 3 3 3 0 Chordopoxvirus fusion protein | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:31716-32282 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~31716-32282 Dimer_Tnp_hAT PF05699.9 g56399.t1 - 0.00082 18.9 0 0.0019 17.7 0 1.6 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:203475-208016 Augustus predicted protein sequence Tomato scaffold1802_contigs=7~203475-208016 LUC7 PF03194.10 g62257.t1 - 0.01 15.3 5.1 0.011 15.3 3.5 1.1 1 0 0 1 1 1 0 LUC7 N_terminus | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:298703-299272 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~298703-299272 DUF845 PF05820.6 g14401.t1 - 0.026 14.2 1 0.72 9.6 0 2.7 2 1 1 3 3 3 0 Baculovirus protein of unknown function (DUF845) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:243754-244269 Augustus predicted protein sequence Tomato scaffold594_contigs=19~243754-244269 TMF_DNA_bd PF12329.3 g20560.t1 - 0.032 14 1.9 0.059 13.1 1.3 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1122675-1123073 Augustus predicted protein sequence Tomato scaffold774_contigs=20~1122675-1123073 CT47 PF15623.1 g20620.t1 - 0.041 13.6 15 0.053 13.2 10.4 1.1 1 0 0 1 1 1 0 Cancer/testis gene family 47 | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:42747-43872 Augustus predicted protein sequence Tomato scaffold777_contigs=4~42747-43872 RPAP3_C PF13877.1 g26590.t1 - 0.12 12.4 0 0.17 11.8 0 1.2 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:25828-26109 Augustus predicted protein sequence Tomato scaffold954_contigs=1~25828-26109 MmlI PF09448.5 g73323.t1 - 0.075 12.7 0.8 0.28 10.9 0.1 2.3 2 2 1 3 3 3 0 Methylmuconolactone methyl-isomerase | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:167140-171087 Augustus predicted protein sequence Tomato scaffold2449_contigs=12~167140-171087 YWFCY PF14293.1 g56142.t1 - 0.19 11.5 1.2 13 5.7 0 2.3 2 0 0 2 2 2 0 YWFCY protein | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:49104-49657 Augustus predicted protein sequence Tomato scaffold1791_contigs=14~49104-49657 Seryl_tRNA_N PF02403.17 g54820.t1 - 0.015 15.3 1.2 0.024 14.6 0.8 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:138122-139006 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~138122-139006 EPO_TPO PF00758.13 g65010.t1 - 0.062 12.9 0 0.11 12.1 0 1.4 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:46169-46705 Augustus predicted protein sequence Tomato scaffold2109_contigs=23~46169-46705 CENP-F_leu_zip PF10473.4 g2887.t1 - 0.0038 17 2.5 0.0067 16.2 1.7 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:111637-112947 Augustus predicted protein sequence Tomato scaffold256_contigs=5~111637-112947 PIR PF00399.14 g7103.t1 - 0.023 14 1.3 0.04 13.2 0.9 1.4 1 0 0 1 1 1 0 Yeast PIR protein repeat | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:135109-135528 Augustus predicted protein sequence Tomato scaffold387_contigs=7~135109-135528 DUF1347 PF07079.6 g11663.t1 - 0.14 10.3 0 0.16 10.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:235034-235348 Augustus predicted protein sequence Tomato scaffold528_contigs=4~235034-235348 Peptidase_C48 PF02902.14 g66896.t1 - 0.0033 17 0 0.0057 16.3 0 1.3 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:150437-154603 Augustus predicted protein sequence Tomato scaffold2172_contigs=4~150437-154603 7TM_GPCR_Srj PF10319.4 g59231.t1 - 0.093 11.8 0.1 0.13 11.3 0 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srj | Ref_seq=scaffold1902_contigs=4, transcript_loc=scaffold1902_contigs=4:42980-45559 Augustus predicted protein sequence Tomato scaffold1902_contigs=4~42980-45559 DUF3365 PF11845.3 g59116.t1 - 0.15 11.8 0.3 0.3 10.9 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3365) | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:355234-355659 Augustus predicted protein sequence Tomato scaffold1896_contigs=29~355234-355659 DUF1985 PF09331.6 g56567.t1 - 1.6E-012 47.4 0 0.00011 21.9 0 3.3 2 1 1 3 3 3 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:266210-271960 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~266210-271960 UBN2 PF14223.1 g37529.t1 - 0.05 13.3 0 0.061 13.1 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:74187-76610 Augustus predicted protein sequence Tomato scaffold1221_contigs=11~74187-76610 LRR_6 PF13516.1 g56029.t1 - 5 7.5 5.4 88 3.6 0 4.2 5 0 0 5 5 5 0 Leucine Rich repeat | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:366950-367827 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~366950-367827 ATHILA PF03078.10 g5914.t1 - 0.000000013 33.8 0 0.000000088 31.1 0 1.9 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:110667-111754 Augustus predicted protein sequence Tomato scaffold344_contigs=14~110667-111754 DUF1664 PF07889.7 g26931.t1 - 0.013 15.3 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:100034-100925 Augustus predicted protein sequence Tomato scaffold962_contigs=5~100034-100925 CAP-ZIP_m PF15255.1 g37865.t1 - 0.077 12.9 4 0.08 12.8 2.8 1.3 1 1 0 1 1 1 0 WASH complex subunit CAP-Z interacting, central region | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:91880-92248 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~91880-92248 PsbP PF01789.11 g26535.t1 - 0.0037 16.7 0 0.0088 15.5 0 1.6 2 0 0 2 2 2 1 PsbP | Ref_seq=scaffold951_contigs=4, transcript_loc=scaffold951_contigs=4:35816-36931 Augustus predicted protein sequence Tomato scaffold951_contigs=4~35816-36931 YecR PF13992.1 g5545.t1 - 0.15 12.2 0.1 0.2 11.8 0 1.2 1 0 0 1 1 1 0 YecR-like lipoprotein | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:66654-67532 Augustus predicted protein sequence Tomato scaffold331_contigs=3~66654-67532 Ph1570 PF09638.5 g35068.t1 - 0.0023 17.7 0.1 0.003 17.3 0.1 1.2 1 0 0 1 1 1 1 Ph1570 protein | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:92466-92786 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~92466-92786 VP9 PF09625.5 g47726.t1 - 0.039 13.7 0.4 0.52 10.1 0.3 2.1 1 1 1 2 2 2 0 VP9 protein | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:278161-278538 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~278161-278538 DUF3363 PF11843.3 g33626.t1 - 0.0089 14.7 3.6 0.0097 14.5 2.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:324268-324741 Augustus predicted protein sequence Tomato scaffold1133_contigs=5~324268-324741 HD-ZIP_N PF04618.7 g72221.t1 - 0.32 11.5 2.5 0.38 11.3 1.8 1.2 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:704214-704414 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~704214-704414 Zea_mays_MuDR PF05928.6 g69918.t1 - 0.1 11.9 0 0.12 11.8 0 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:4869-5240 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~4869-5240 SlyX PF04102.7 g65488.t1 - 0.082 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:224263-224502 Augustus predicted protein sequence Tomato scaffold2128_contigs=9~224263-224502 Vps5 PF09325.5 g48377.t1 - 0.0035 16.6 1.5 0.0056 15.9 1.1 1.2 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:163600-164268 Augustus predicted protein sequence Tomato scaffold1503_contigs=5~163600-164268 WIYLD PF10440.4 g31322.t1 - 0.13 12.2 0.1 13 5.7 0 2.3 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:523443-523808 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~523443-523808 Ribosomal_L6e_N PF03868.10 g43685.t1 - 0.14 12 0.8 0.41 10.5 0.3 1.9 2 0 0 2 2 2 0 Ribosomal protein L6, N-terminal domain | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:75-631 Augustus predicted protein sequence Tomato scaffold1390_contigs=3~75-631 DUF3528 PF12045.3 g54271.t1 - 0.011 15.9 0 0.014 15.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3528) | Ref_seq=scaffold1718_contigs=3, transcript_loc=scaffold1718_contigs=3:58972-59259 Augustus predicted protein sequence Tomato scaffold1718_contigs=3~58972-59259 ETF_alpha PF00766.14 g3249.t1 - 0.11 12.1 0 0.19 11.3 0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein FAD-binding domain | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:16316-17071 Augustus predicted protein sequence Tomato scaffold265_contigs=4~16316-17071 ATHILA PF03078.10 g52809.t1 - 0.000006 25.1 0 0.0000076 24.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:42510-45841 Augustus predicted protein sequence Tomato scaffold1648_contigs=6~42510-45841 Cwf_Cwc_15 PF04889.7 g17463.t1 - 0.068 12.8 3.3 0.08 12.6 2.3 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:85793-86182 Augustus predicted protein sequence Tomato scaffold707_contigs=5~85793-86182 FANCI_HD1 PF14679.1 g54114.t1 - 0.048 13.3 0 0.07 12.8 0 1.2 1 0 0 1 1 1 0 FANCI helical domain 1 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:11204-12062 Augustus predicted protein sequence Tomato scaffold1716_contigs=6~11204-12062 CAF-1_p150 PF11600.3 g81583.t1 - 0.000053 22.6 24.8 0.000065 22.4 17.2 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:183537-184459 Augustus predicted protein sequence Tomato scaffold2731_contigs=12~183537-184459 RVT_2 PF07727.9 g45250.t1 - 0.000023 23.5 0 0.000029 23.1 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:517687-518688 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~517687-518688 DUF2721 PF11026.3 g11956.t1 - 0.098 12.2 0 0.2 11.2 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:31662-34386 Augustus predicted protein sequence Tomato scaffold534_contigs=3~31662-34386 DUF4201 PF13870.1 g48934.t1 - 0.00099 18.5 6.2 0.0017 17.8 4.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:352173-353162 Augustus predicted protein sequence Tomato scaffold1517_contigs=17~352173-353162 zf-CCHC_5 PF14787.1 g83485.t1 - 0.00036 19.9 5.1 0.00071 19 3.5 1.5 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:674811-675678 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~674811-675678 Peptidase_C14 PF00656.17 g41553.t1 - 0.099 12.3 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Caspase domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:112988-113254 Augustus predicted protein sequence Tomato scaffold1335_contigs=6~112988-113254 CAF-1_p150 PF11600.3 g40157.t1 - 0.00035 20 26.4 0.00035 20 18.3 1.4 2 0 0 2 2 2 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:238976-240196 Augustus predicted protein sequence Tomato scaffold1292_contigs=11~238976-240196 Antigen_Bd37 PF11641.3 g66591.t1 - 0.13 11.4 0.9 0.15 11.3 0.6 1 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:158137-158739 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~158137-158739 K-box PF01486.12 g77577.t1 - 0.093 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 K-box region | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:73921-74346 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~73921-74346 DUF3552 PF12072.3 g82387.t1 - 0.13 11.4 1.6 0.18 11 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:5768-8292 Augustus predicted protein sequence Tomato scaffold2742_contigs=4~5768-8292 YdjO PF14169.1 g4263.t1 - 0.037 13.4 0.8 0.08 12.4 0.1 1.9 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold295_contigs=10, transcript_loc=scaffold295_contigs=10:60257-64022 Augustus predicted protein sequence Tomato scaffold295_contigs=10~60257-64022 DUF1465 PF07323.7 g31128.t1 - 0.11 12 0.1 0.12 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) | Ref_seq=scaffold1060_contigs=1, transcript_loc=scaffold1060_contigs=1:9769-11727 Augustus predicted protein sequence Tomato scaffold1060_contigs=1~9769-11727 Vps39_2 PF10367.4 g27846.t1 - 0.083 13 1.9 0.095 12.8 1.3 1.1 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:13628-13906 Augustus predicted protein sequence Tomato scaffold985_contigs=1~13628-13906 DUF2167 PF09935.4 g67074.t1 - 0.066 12 0 0.073 11.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2167) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:728548-728835 Augustus predicted protein sequence Tomato scaffold2173_contigs=15~728548-728835 ATHILA PF03078.10 g8157.t1 - 0.00021 20 0 0.00029 19.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:195737-196108 Augustus predicted protein sequence Tomato scaffold421_contigs=12~195737-196108 DUF86 PF01934.12 g77287.t1 - 0.069 12.7 0.1 0.1 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF86 | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:209977-210462 Augustus predicted protein sequence Tomato scaffold2652_contigs=8~209977-210462 Leucyl-specific PF14795.1 g70231.t1 - 0.013 15.3 12.4 54 3.7 0 6 6 0 0 6 6 6 0 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold2335_contigs=12, transcript_loc=scaffold2335_contigs=12:11776-16070 Augustus predicted protein sequence Tomato scaffold2335_contigs=12~11776-16070 CHDNT PF08073.7 g23758.t1 - 0.14 11.8 0 0.2 11.3 0 1.3 1 0 0 1 1 1 0 CHDNT (NUC034) domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:202108-202311 Augustus predicted protein sequence Tomato scaffold865_contigs=7~202108-202311 Plug PF07715.10 g57980.t1 - 0.054 13.8 1.3 0.17 12.2 0.1 2 2 0 0 2 2 2 0 TonB-dependent Receptor Plug Domain | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:214939-215773 Augustus predicted protein sequence Tomato scaffold1841_contigs=12~214939-215773 DUF2269 PF10027.4 g60333.t1 - 0.086 12.6 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:199139-206077 Augustus predicted protein sequence Tomato scaffold1948_contigs=36~199139-206077 Cwf_Cwc_15 PF04889.7 g11506.t1 - 0.2 11.3 6.4 0.27 10.9 4.4 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:201449-202138 Augustus predicted protein sequence Tomato scaffold525_contigs=12~201449-202138 CAP_N PF01213.14 g45446.t1 - 0.013 14.7 1.6 0.016 14.5 1.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:283853-284158 Augustus predicted protein sequence Tomato scaffold1447_contigs=7~283853-284158 DUF4283 PF14111.1 g7567.t1 - 0.000013 24.3 0 0.00002 23.7 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:230506-231159 Augustus predicted protein sequence Tomato scaffold404_contigs=9~230506-231159 Imm32 PF15579.1 g52562.t1 - 0.16 11.5 0 0.24 10.9 0 1.2 1 0 0 1 1 1 0 Immunity protein 32 | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:443415-444093 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~443415-444093 Ribosomal_L19e PF01280.15 g41506.t1 - 0.11 12.2 1.8 0.13 11.9 1.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L19e | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:281840-282130 Augustus predicted protein sequence Tomato scaffold1333_contigs=10~281840-282130 DBD_Tnp_Mut PF03108.10 g32444.t1 - 3.5E-009 36.1 0.1 6.6E-009 35.2 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:272898-274180 Augustus predicted protein sequence Tomato scaffold1104_contigs=13~272898-274180 Chlam_OMP3 PF03503.8 g80251.t1 - 0.11 12.6 0.5 6.5 7 0.1 2.8 3 0 0 3 3 3 0 Chlamydia cysteine-rich outer membrane protein 3 | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:886359-887676 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~886359-887676 DUF4523 PF15023.1 g40155.t1 - 0.034 13.6 0 0.042 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:237797-238258 Augustus predicted protein sequence Tomato scaffold1292_contigs=11~237797-238258 DUF3552 PF12072.3 g54008.t1 - 0.000039 22.9 23.9 0.000039 22.9 16.5 5 1 1 3 5 5 5 3 Domain of unknown function (DUF3552) | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:88403-90541 Augustus predicted protein sequence Tomato scaffold1710_contigs=11~88403-90541 Dor1 PF04124.7 g58369.t1 - 0.012 14 2.8 0.018 13.4 1.9 1.1 1 0 0 1 1 1 0 Dor1-like family | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:219669-224363 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~219669-224363 zf-CCHC_4 PF14392.1 g17403.t1 - 0.011 15.4 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold705_contigs=2, transcript_loc=scaffold705_contigs=2:9702-11661 Augustus predicted protein sequence Tomato scaffold705_contigs=2~9702-11661 YCII PF03795.9 g77597.t1 - 0.012 15.7 0.3 0.41 10.8 0.2 2.1 1 1 0 1 1 1 0 YCII-related domain | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:118704-118967 Augustus predicted protein sequence Tomato scaffold2659_contigs=6~118704-118967 Dehydratase_LU PF02286.10 g23344.t1 - 0.069 11.3 0 2.4 6.3 0 2 2 0 0 2 2 2 0 Dehydratase large subunit | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:45104-46348 Augustus predicted protein sequence Tomato scaffold858_contigs=4~45104-46348 DUF805 PF05656.9 g27598.t1 - 0.06 13.1 0.1 0.069 12.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:31523-33539 Augustus predicted protein sequence Tomato scaffold982_contigs=2~31523-33539 DUF3656 PF12392.3 g12637.t1 - 0.0099 15.9 0.6 0.012 15.6 0.4 1.1 1 0 0 1 1 1 1 Collagenase | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:559537-560202 Augustus predicted protein sequence Tomato scaffold556_contigs=11~559537-560202 DUF3649 PF12365.3 g87004.t1 - 0.54 9.8 3.1 0.82 9.2 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3649) | Ref_seq=scaffold2920_contigs=1, transcript_loc=scaffold2920_contigs=1:12322-12618 Augustus predicted protein sequence Tomato scaffold2920_contigs=1~12322-12618 UBN2 PF14223.1 g28531.t1 - 0.0013 18.5 1.6 0.0013 18.5 1.1 2.5 2 1 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:265411-266732 Augustus predicted protein sequence Tomato scaffold1004_contigs=12~265411-266732 UBN2 PF14223.1 g33741.t1 - 0.005 16.6 0.2 0.19 11.5 0.1 2.2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:217861-223841 Augustus predicted protein sequence Tomato scaffold1134_contigs=12~217861-223841 DUF1684 PF07920.6 g82538.t1 - 0.14 12 0.7 0.56 10 0.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1684) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:16709-18646 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~16709-18646 GDH_N PF12466.3 g79925.t1 - 0.044 13.7 0.2 0.074 13 0.1 1.5 1 1 0 1 1 1 0 Glutamate dehydrogenase N terminal | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:107966-108220 Augustus predicted protein sequence Tomato scaffold2704_contigs=20~107966-108220 THOC7 PF05615.8 g54607.t1 - 0.28 11.4 3.8 2.3 8.4 0.1 2.2 2 0 0 2 2 2 0 Tho complex subunit 7 | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:200133-201062 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~200133-201062 Pex14_N PF04695.8 g79668.t1 - 0.033 14.2 3.4 0.039 13.9 2.4 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:104710-110694 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~104710-110694 BSP_II PF05432.6 g73525.t1 - 0.052 12.8 0.1 0.077 12.2 0.1 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold2483_contigs=12, transcript_loc=scaffold2483_contigs=12:42086-45436 Augustus predicted protein sequence Tomato scaffold2483_contigs=12~42086-45436 Rubi_NSP_C PF12601.3 g32071.t1 - 0.084 12.7 0 0.16 11.8 0 1.4 1 0 0 1 1 1 0 Rubivirus non-structural protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:276673-278201 Augustus predicted protein sequence Tomato scaffold1099_contigs=9~276673-278201 Sigma70_ner PF04546.8 g82427.t1 - 0.0011 18.6 5.1 0.0011 18.6 3.5 2.2 2 0 0 2 2 2 1 Sigma-70, non-essential region | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:174184-175335 Augustus predicted protein sequence Tomato scaffold2742_contigs=4~174184-175335 YqfQ PF14181.1 g9030.t1 - 1.3 8.9 4.7 1.7 8.6 3.3 1.1 1 0 0 1 1 1 0 YqfQ-like protein | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:472235-472516 Augustus predicted protein sequence Tomato scaffold443_contigs=11~472235-472516 Nop14 PF04147.7 g67920.t1 - 0.36 8.6 18.4 0.45 8.3 12.7 1.2 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:248478-250692 Augustus predicted protein sequence Tomato scaffold2201_contigs=5~248478-250692 DUF4337 PF14235.1 g51380.t1 - 9.4 6 7.1 15 5.3 4.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:92518-93759 Augustus predicted protein sequence Tomato scaffold1613_contigs=9~92518-93759 RnaseA PF00074.15 g50500.t1 - 0.031 14.5 0.1 0.054 13.7 0.1 1.3 1 0 0 1 1 1 0 Pancreatic ribonuclease | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:376401-381107 Augustus predicted protein sequence Tomato scaffold1565_contigs=6~376401-381107 ER-remodelling PF14755.1 g3390.t1 - 0.012 15.6 0.2 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:233400-233791 Augustus predicted protein sequence Tomato scaffold270_contigs=10~233400-233791 DUF4290 PF14123.1 g28619.t1 - 0.086 12 1.1 0.096 11.8 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:192696-194052 Augustus predicted protein sequence Tomato scaffold1005_contigs=2~192696-194052 Arfaptin PF06456.8 g24725.t1 - 0.15 11.4 0.1 0.21 10.8 0.1 1.2 1 0 0 1 1 1 0 Arfaptin-like domain | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:213623-214054 Augustus predicted protein sequence Tomato scaffold893_contigs=2~213623-214054 zf-CCHC PF00098.18 g74139.t1 - 0.0004 20.1 0.3 0.00074 19.3 0.2 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:64723-65007 Augustus predicted protein sequence Tomato scaffold2522_contigs=11~64723-65007 Metallophos PF00149.23 g29056.t1 - 0.015 14.6 0 0.017 14.5 0 1.1 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:404202-404579 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~404202-404579 NfrA_C PF13283.1 g52212.t1 - 0.077 12.3 0 12 5.2 0 2.1 2 0 0 2 2 2 0 Bacteriophage N adsorption protein A C-term | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:84120-84740 Augustus predicted protein sequence Tomato scaffold1633_contigs=40~84120-84740 Phage_cap_E PF03864.10 g83781.t1 - 0.0018 17.3 0.1 0.0023 16.9 0.1 1.1 1 0 0 1 1 1 1 Phage major capsid protein E | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1800519-1801016 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~1800519-1801016 Cwf_Cwc_15 PF04889.7 g53949.t1 - 0.015 15 3.6 0.017 14.8 2.5 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:59490-59875 Augustus predicted protein sequence Tomato scaffold1709_contigs=7~59490-59875 KIAA1430 PF13879.1 g11593.t1 - 0.033 14.5 0 0.044 14.2 0 1.2 1 0 0 1 1 1 0 KIAA1430 homologue | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:21657-23560 Augustus predicted protein sequence Tomato scaffold528_contigs=4~21657-23560 FtsX PF02687.16 g19084.t1 - 0.36 10.5 5.4 0.89 9.3 3.8 1.6 1 1 0 1 1 1 0 FtsX-like permease family | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:75561-75851 Augustus predicted protein sequence Tomato scaffold744_contigs=4~75561-75851 Myc_N PF01056.13 g7417.t1 - 0.081 12 1.2 0.088 11.9 0.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:273252-273569 Augustus predicted protein sequence Tomato scaffold395_contigs=7~273252-273569 Pex14_N PF04695.8 g17943.t1 - 0.019 15 0 7.1 6.6 0 2.1 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold719_contigs=2, transcript_loc=scaffold719_contigs=2:1-5530 Augustus predicted protein sequence Tomato scaffold719_contigs=2~1-5530 PsbL PF02419.12 g38920.t1 - 0.036 13.4 0 0.077 12.4 0 1.5 1 0 0 1 1 1 0 PsbL protein | Ref_seq=scaffold1257_contigs=2, transcript_loc=scaffold1257_contigs=2:60355-61608 Augustus predicted protein sequence Tomato scaffold1257_contigs=2~60355-61608 DUF3987 PF13148.1 g30993.t1 - 0.013 14 0.1 0.013 14 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:208004-208324 Augustus predicted protein sequence Tomato scaffold1053_contigs=5~208004-208324 DUF4387 PF14330.1 g26989.t1 - 0.09 13.1 0 0.14 12.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:111877-112320 Augustus predicted protein sequence Tomato scaffold965_contigs=10~111877-112320 TAF4 PF05236.9 g21250.t1 - 0.11 11.7 7.3 0.15 11.3 5.1 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:234408-236162 Augustus predicted protein sequence Tomato scaffold795_contigs=8~234408-236162 Tiny_TM_bacill PF09680.5 g66787.t1 - 2.9 7.4 6.5 4.3 6.8 1.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:1-5281 Augustus predicted protein sequence Tomato scaffold2170_contigs=8~1-5281 DUF3246 PF11596.3 g10702.t1 - 0.027 13.7 9.1 0.42 9.8 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3246) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:300878-301768 Augustus predicted protein sequence Tomato scaffold503_contigs=7~300878-301768 DUF4303 PF14136.1 g47080.t1 - 0.12 12 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:375710-376135 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~375710-376135 DUF3020 PF11223.3 g7754.t1 - 0.14 12.5 0.5 4.4 7.7 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3020) | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:222582-223636 Augustus predicted protein sequence Tomato scaffold406_contigs=8~222582-223636 RNase_T PF00929.19 g37663.t1 - 0.04 14.2 0 0.085 13.1 0 1.5 1 0 0 1 1 1 0 Exonuclease | Ref_seq=scaffold1227_contigs=6, transcript_loc=scaffold1227_contigs=6:21554-22959 Augustus predicted protein sequence Tomato scaffold1227_contigs=6~21554-22959 Zea_mays_MuDR PF05928.6 g24882.t1 - 0.039 13.3 0 0.041 13.2 0 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) | Ref_seq=scaffold903_contigs=3, transcript_loc=scaffold903_contigs=3:58248-58493 Augustus predicted protein sequence Tomato scaffold903_contigs=3~58248-58493 DUF4219 PF13961.1 g70488.t1 - 0.000058 22.3 0.1 0.00012 21.4 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:32322-33153 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~32322-33153 A2M PF00207.17 g58617.t1 - 0.025 14.1 0.2 8.1 6.1 0.1 2.5 2 1 0 2 2 2 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1865_contigs=13, transcript_loc=scaffold1865_contigs=13:5484-5927 Augustus predicted protein sequence Tomato scaffold1865_contigs=13~5484-5927 P33MONOX PF15302.1 g22430.t1 - 0.023 14.3 0.2 0.034 13.7 0.1 1.2 1 0 0 1 1 1 0 P33 mono-oxygenase | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:22127-23164 Augustus predicted protein sequence Tomato scaffold830_contigs=3~22127-23164 CCDC144C PF14915.1 g54835.t1 - 0.00005 22.3 9.8 0.000063 22 6.8 1.1 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:169456-169833 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~169456-169833 Nop14 PF04147.7 g35177.t1 - 1.6 6.5 18.8 1.7 6.4 13 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:522522-522767 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~522522-522767 MerR_2 PF13591.1 g71976.t1 - 0.0006 19.3 0 0.00083 18.9 0 1.2 1 0 0 1 1 1 1 MerR HTH family regulatory protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:521561-521830 Augustus predicted protein sequence Tomato scaffold2378_contigs=18~521561-521830 RWP-RK PF02042.10 g57290.t1 - 0.09 12.6 0 0.14 11.9 0 1.3 1 0 0 1 1 1 0 RWP-RK domain | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:73286-73870 Augustus predicted protein sequence Tomato scaffold1830_contigs=5~73286-73870 Transposase_28 PF04195.7 g56619.t1 - 0.01 15.1 0 0.086 12.1 0 2 2 0 0 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:575697-577000 Augustus predicted protein sequence Tomato scaffold1810_contigs=37~575697-577000 DUF640 PF04852.7 g64524.t1 - 0.07 13.3 0.1 0.81 9.8 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF640) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:201059-201505 Augustus predicted protein sequence Tomato scaffold2070_contigs=9~201059-201505 Cytadhesin_P30 PF07271.6 g80259.t1 - 0.0031 16.8 6.4 0.0038 16.5 4.4 1.1 1 0 0 1 1 1 1 Cytadhesin P30/P32 | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:909681-910145 Augustus predicted protein sequence Tomato scaffold2709_contigs=16~909681-910145 Phage_NinH PF06322.6 g58383.t1 - 0.082 12.5 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein | Ref_seq=scaffold1859_contigs=11, transcript_loc=scaffold1859_contigs=11:16771-25147 Augustus predicted protein sequence Tomato scaffold1859_contigs=11~16771-25147 MRI PF15325.1 g69815.t1 - 0.069 14.1 3.3 0.081 13.9 2.3 1.2 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:54184-54565 Augustus predicted protein sequence Tomato scaffold2306_contigs=40~54184-54565 UPF0547 PF10571.4 g18124.t1 - 0.037 13.7 0.1 0.071 12.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:484325-490154 Augustus predicted protein sequence Tomato scaffold720_contigs=9~484325-490154 UBN2 PF14223.1 g71615.t1 - 0.015 15 0.1 1.1 9 0 2.3 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:47535-49249 Augustus predicted protein sequence Tomato scaffold2370_contigs=5~47535-49249 Tyr-DNA_phospho PF06087.7 g82453.t1 - 0.01 14.4 0.3 0.012 14.2 0.2 1 1 0 0 1 1 1 0 Tyrosyl-DNA phosphodiesterase | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:89330-89956 Augustus predicted protein sequence Tomato scaffold2743_contigs=6~89330-89956 DUF1691 PF07950.6 g72097.t1 - 0.12 12.2 0 0.16 11.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1691) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:14365-14724 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~14365-14724 DUF842 PF05811.8 g78356.t1 - 0.45 9.9 6.3 2.5 7.5 0.3 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:302137-302688 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~302137-302688 Trypan_PARP PF05887.6 g39773.t1 - 0.91 9.3 23.1 1.7 8.4 16 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:235097-235597 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~235097-235597 CHRD PF07452.7 g25145.t1 - 0.076 13.6 0 0.092 13.3 0 1.1 1 0 0 1 1 1 0 CHRD domain | Ref_seq=scaffold920_contigs=3, transcript_loc=scaffold920_contigs=3:6833-7611 Augustus predicted protein sequence Tomato scaffold920_contigs=3~6833-7611 SPO11_like PF03533.9 g67336.t1 - 0.028 14.3 0.5 2.1 8.3 0.1 2.4 2 0 0 2 2 2 0 SPO11 homologue | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:309199-309474 Augustus predicted protein sequence Tomato scaffold2181_contigs=6~309199-309474 DUF4219 PF13961.1 g41993.t1 - 0.0012 18.1 0.6 0.0026 17.1 0.4 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:114213-115146 Augustus predicted protein sequence Tomato scaffold1346_contigs=10~114213-115146 SR-25 PF10500.4 g27220.t1 - 3.8 6.9 6.3 5.1 6.5 4.4 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:51782-52000 Augustus predicted protein sequence Tomato scaffold974_contigs=15~51782-52000 RVT_3 PF13456.1 g33032.t1 - 0.02 14.6 0 0.028 14.2 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:62670-63514 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~62670-63514 NPV_P10 PF05531.7 g7854.t1 - 0.012 15.7 0.1 0.024 14.8 0.1 1.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold409_contigs=16, transcript_loc=scaffold409_contigs=16:182008-182247 Augustus predicted protein sequence Tomato scaffold409_contigs=16~182008-182247 Macoilin PF09726.4 g61296.t1 - 0.49 8.6 2.3 0.5 8.5 1.6 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:122298-122932 Augustus predicted protein sequence Tomato scaffold1964_contigs=6~122298-122932 Senescence PF06911.7 g43986.t1 - 0.0061 16.2 8.1 0.0083 15.8 5.6 1.1 1 0 0 1 1 1 1 Senescence-associated protein | Ref_seq=scaffold1400_contigs=2, transcript_loc=scaffold1400_contigs=2:11400-14045 Augustus predicted protein sequence Tomato scaffold1400_contigs=2~11400-14045 Atg14 PF10186.4 g43187.t1 - 0.1 11.5 8 0.15 10.9 5.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:25540-27205 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~25540-27205 FH2 PF02181.18 g58111.t1 - 0.022 13.6 0.1 0.026 13.4 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:40294-40707 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~40294-40707 Peptidase_C62 PF12380.3 g1310.t1 - 0.11 11.2 0.1 0.14 10.9 0.1 1.1 1 0 0 1 1 1 0 Gill-associated viral 3C-like peptidase | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:45161-45463 Augustus predicted protein sequence Tomato scaffold197_contigs=2~45161-45463 BphX PF06139.7 g40746.t1 - 0.11 12.1 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 BphX-like | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:84836-85081 Augustus predicted protein sequence Tomato scaffold1309_contigs=4~84836-85081 RVT_3 PF13456.1 g31102.t1 - 0.0028 17.3 0 0.39 10.5 0 2.2 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:313465-314951 Augustus predicted protein sequence Tomato scaffold1055_contigs=9~313465-314951 HCV_NS5a_C PF12941.2 g46552.t1 - 0.056 13 0 0.069 12.7 0 1.2 1 0 0 1 1 1 0 HCV NS5a protein C-terminal region | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:434135-435589 Augustus predicted protein sequence Tomato scaffold1483_contigs=7~434135-435589 DUF2650 PF10853.3 g52434.t1 - 0.23 10.9 1.1 0.49 9.8 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2650) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:37998-38351 Augustus predicted protein sequence Tomato scaffold1639_contigs=14~37998-38351 FH2 PF02181.18 g86235.t1 - 0.00097 18.1 4.6 0.0012 17.7 3.2 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:30050-30518 Augustus predicted protein sequence Tomato scaffold2845_contigs=1~30050-30518 bZIP_1 PF00170.16 g68826.t1 - 0.13 12.2 0.1 0.49 10.4 0 1.8 2 0 0 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:62510-63298 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~62510-63298 NumbF PF06311.7 g40669.t1 - 0.013 15.6 0.6 0.022 14.8 0.2 1.6 2 0 0 2 2 2 0 NUMB domain | Ref_seq=scaffold1305_contigs=4, transcript_loc=scaffold1305_contigs=4:89014-91566 Augustus predicted protein sequence Tomato scaffold1305_contigs=4~89014-91566 PBP_sp32 PF07222.7 g48001.t1 - 0.024 13.8 0.5 0.023 13.9 0.3 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:299376-299750 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~299376-299750 CAP_N PF01213.14 g5915.t1 - 0.095 11.9 7.8 0.12 11.5 5.4 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:115016-115426 Augustus predicted protein sequence Tomato scaffold344_contigs=14~115016-115426 zf-CCHC PF00098.18 g73592.t1 - 0.0000054 26 6.8 0.0000054 26 4.7 1.8 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:164864-165203 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~164864-165203 RVT_3 PF13456.1 g23123.t1 - 1.8E-011 43.6 0.1 3E-011 42.9 0.1 1.3 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold849_contigs=5, transcript_loc=scaffold849_contigs=5:115655-115993 Augustus predicted protein sequence Tomato scaffold849_contigs=5~115655-115993 DUF3180 PF11377.3 g34718.t1 - 0.028 14.2 0 0.036 13.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:104605-104922 Augustus predicted protein sequence Tomato scaffold1155_contigs=5~104605-104922 VGCC_beta4Aa_N PF12052.3 g51217.t1 - 0.029 14.2 0.9 0.072 12.9 0.7 1.7 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:23906-25802 Augustus predicted protein sequence Tomato scaffold1609_contigs=5~23906-25802 MarR_2 PF12802.2 g23817.t1 - 0.013 15.2 0.6 4.4 7 0 2.6 2 0 0 2 2 2 0 MarR family | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:22427-25924 Augustus predicted protein sequence Tomato scaffold866_contigs=9~22427-25924 DUF1502 PF07397.6 g60169.t1 - 3.8 7.2 6.6 29 4.4 0 3.7 3 1 1 4 4 4 0 Repeat of unknown function (DUF1502) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:224867-225214 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~224867-225214 Keratin PF02422.11 g31485.t1 - 0.15 12 0 0.15 12 0 1.2 1 0 0 1 1 1 0 Keratin | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:894-1100 Augustus predicted protein sequence Tomato scaffold1076_contigs=5~894-1100 DDHD PF02862.12 g77884.t1 - 0.015 15.1 10.6 0.016 15 7.3 1.1 1 0 0 1 1 1 0 DDHD domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:704391-705008 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~704391-705008 DUF4283 PF14111.1 g8062.t1 - 0.07 12.2 0 0.1 11.6 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:142889-145173 Augustus predicted protein sequence Tomato scaffold416_contigs=9~142889-145173 SOBP PF15279.1 g1317.t1 - 0.33 11.2 2.8 0.38 11 1.9 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:67735-68322 Augustus predicted protein sequence Tomato scaffold197_contigs=2~67735-68322 NAD_binding_7 PF13241.1 g48221.t1 - 0.11 12.7 0.9 0.16 12.2 0.6 1.2 1 0 0 1 1 1 0 Putative NAD(P)-binding | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:37853-38464 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~37853-38464 Matrilin_ccoil PF10393.4 g87780.t1 - 0.02 14.2 0 0.033 13.5 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold4068_contigs=1, transcript_loc=scaffold4068_contigs=1:801-1180 Augustus predicted protein sequence Tomato scaffold4068_contigs=1~801-1180 DUF2730 PF10805.3 g30313.t1 - 0.00019 21 0.9 0.00029 20.5 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:29173-30734 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~29173-30734 DUF1003 PF06210.6 g13603.t1 - 0.013 15.4 0.3 0.022 14.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:98552-100665 Augustus predicted protein sequence Tomato scaffold578_contigs=5~98552-100665 Gemini_AL2 PF01440.11 g70466.t1 - 0.16 12 0.1 0.16 12 0.1 1.7 2 0 0 2 2 2 0 Geminivirus AL2 protein | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:405213-406862 Augustus predicted protein sequence Tomato scaffold2341_contigs=11~405213-406862 Protamine_P2 PF00841.14 g77787.t1 - 0.023 15.2 1.1 0.023 15.2 0.7 1.9 2 0 0 2 2 2 0 Sperm histone P2 | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:373807-374127 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~373807-374127 ATHILA PF03078.10 g64206.t1 - 3.2E-009 35.9 0 0.000026 22.9 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:467666-468543 Augustus predicted protein sequence Tomato scaffold2053_contigs=16~467666-468543 Laminin_II PF06009.7 g37353.t1 - 0.047 13.4 1.1 0.054 13.2 0.8 1.1 1 0 0 1 1 1 0 Laminin Domain II | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:177273-179220 Augustus predicted protein sequence Tomato scaffold1217_contigs=8~177273-179220 Pfg27 PF09216.5 g56261.t1 - 0.028 14 0.1 0.044 13.3 0.1 1.3 1 0 0 1 1 1 0 Pfg27 | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:96366-98267 Augustus predicted protein sequence Tomato scaffold1795_contigs=18~96366-98267 DUF244 PF03112.9 g54062.t1 - 0.12 11.9 0 0.13 11.7 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein family (ORF7) DUF | Ref_seq=scaffold1712_contigs=1, transcript_loc=scaffold1712_contigs=1:48089-48431 Augustus predicted protein sequence Tomato scaffold1712_contigs=1~48089-48431 zf-CCHC PF00098.18 g85202.t1 - 0.023 14.6 0.2 0.039 13.8 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2794_contigs=1, transcript_loc=scaffold2794_contigs=1:29279-30236 Augustus predicted protein sequence Tomato scaffold2794_contigs=1~29279-30236 RRM_5 PF13893.1 g27429.t1 - 0.11 12.3 0 0.27 11.1 0 1.7 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:24643-25002 Augustus predicted protein sequence Tomato scaffold980_contigs=13~24643-25002 DUF2636 PF11120.3 g75045.t1 - 0.068 12.6 0.2 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2636) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:14756-16860 Augustus predicted protein sequence Tomato scaffold2588_contigs=37~14756-16860 DUF641 PF04859.7 g44203.t1 - 0.0081 15.9 3.6 0.013 15.2 2.3 1.6 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1416_contigs=2, transcript_loc=scaffold1416_contigs=2:4820-5461 Augustus predicted protein sequence Tomato scaffold1416_contigs=2~4820-5461 DUF1347 PF07079.6 g69329.t1 - 0.035 12.3 0.1 0.04 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:44818-45216 Augustus predicted protein sequence Tomato scaffold2271_contigs=9~44818-45216 NESP55 PF06390.7 g1666.t1 - 0.39 10 3.4 0.55 9.5 2.3 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:109174-110881 Augustus predicted protein sequence Tomato scaffold213_contigs=5~109174-110881 DUF4473 PF14747.1 g4072.t1 - 0.016 15.3 1.5 0.039 14.1 0.3 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) | Ref_seq=scaffold290_contigs=8, transcript_loc=scaffold290_contigs=8:115297-116947 Augustus predicted protein sequence Tomato scaffold290_contigs=8~115297-116947 SR-25 PF10500.4 g29097.t1 - 0.18 11.2 16.2 0.22 10.9 11.3 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:591030-593365 Augustus predicted protein sequence Tomato scaffold1012_contigs=21~591030-593365 DUF3681 PF12442.3 g21765.t1 - 0.067 13.3 0.5 0.09 12.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3681) | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:40693-41749 Augustus predicted protein sequence Tomato scaffold814_contigs=3~40693-41749 Cohesin_HEAT PF12765.2 g4596.t1 - 0.00029 20.7 0.5 1.1 9.3 0 2.5 2 0 0 2 2 2 2 HEAT repeat associated with sister chromatid cohesion | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:44940-45704 Augustus predicted protein sequence Tomato scaffold304_contigs=1~44940-45704 Recombinase PF07508.8 g41209.t1 - 0.051 13.8 0 0.051 13.8 0 1.1 1 0 0 1 1 1 0 Recombinase | Ref_seq=scaffold1327_contigs=1, transcript_loc=scaffold1327_contigs=1:1-970 Augustus predicted protein sequence Tomato scaffold1327_contigs=1~1-970 DUF1724 PF08350.5 g75613.t1 - 0.0099 15.3 0 11 5.6 0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:59240-61864 Augustus predicted protein sequence Tomato scaffold2605_contigs=63~59240-61864 FadA PF09403.5 g82853.t1 - 0.038 13.9 2.2 0.055 13.4 1.5 1.3 1 0 0 1 1 1 0 Adhesion protein FadA | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:21841-22804 Augustus predicted protein sequence Tomato scaffold2749_contigs=11~21841-22804 Fmp27 PF10344.4 g12334.t1 - 0.15 9.7 0 0.18 9.4 0 1 1 0 0 1 1 1 0 Mitochondrial protein from FMP27 | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:104725-109041 Augustus predicted protein sequence Tomato scaffold547_contigs=4~104725-109041 DUF1297 PF06973.7 g59123.t1 - 0.11 11.7 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1297) | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:397747-398010 Augustus predicted protein sequence Tomato scaffold1896_contigs=29~397747-398010 zf-CCHC PF00098.18 g43250.t1 - 0.0037 17.1 0.9 0.0054 16.6 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:263582-263923 Augustus predicted protein sequence Tomato scaffold1384_contigs=11~263582-263923 MCC-bdg_PDZ PF10506.4 g23812.t1 - 0.013 15.2 0.2 0.028 14.2 0.2 1.5 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:10919-11287 Augustus predicted protein sequence Tomato scaffold866_contigs=9~10919-11287 ATHILA PF03078.10 g4547.t1 - 2.8E-009 36 0 3.4E-009 35.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:86319-86729 Augustus predicted protein sequence Tomato scaffold303_contigs=3~86319-86729 COX5A PF02284.11 g72391.t1 - 0.07 13 0 0.14 12 0 1.6 2 0 0 2 2 2 0 Cytochrome c oxidase subunit Va | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1276178-1277393 Augustus predicted protein sequence Tomato scaffold2382_contigs=32~1276178-1277393 DUF4578 PF15147.1 g79703.t1 - 0.09 13.1 0 0.14 12.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:243497-244141 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~243497-244141 DUF1398 PF07166.6 g27378.t1 - 0.1 12.5 0.1 21 5 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:39183-40778 Augustus predicted protein sequence Tomato scaffold976_contigs=1~39183-40778 DUF4048 PF13257.1 g52965.t1 - 0.089 12.4 0 0.095 12.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4048) | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:27252-28044 Augustus predicted protein sequence Tomato scaffold1667_contigs=5~27252-28044 DUF4126 PF13548.1 g7149.t1 - 0.12 11.8 1.4 1.4 8.3 1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4126) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:277102-277619 Augustus predicted protein sequence Tomato scaffold387_contigs=7~277102-277619 Baculo_11_kDa PF06143.6 g83403.t1 - 0.0054 16 0.7 0.0099 15.2 0.5 1.4 1 0 0 1 1 1 1 Baculovirus 11 kDa family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:332480-334217 Augustus predicted protein sequence Tomato scaffold2761_contigs=35~332480-334217 HeLo PF14479.1 g24827.t1 - 0.0073 16 0.4 3.8 7.2 0.1 2.4 2 1 0 2 2 2 2 Prion-inhibition and propagation | Ref_seq=scaffold900_contigs=1, transcript_loc=scaffold900_contigs=1:33962-34616 Augustus predicted protein sequence Tomato scaffold900_contigs=1~33962-34616 N-glycanase_N PF09112.5 g4098.t1 - 0.068 12.5 0.2 0.81 9 0.1 2.1 1 1 0 1 1 1 0 Peptide-N-glycosidase F, N terminal | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:39618-42189 Augustus predicted protein sequence Tomato scaffold291_contigs=11~39618-42189 PsbP PF01789.11 g10715.t1 - 0.11 11.8 0.1 0.48 9.8 0 1.9 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:339874-340854 Augustus predicted protein sequence Tomato scaffold503_contigs=7~339874-340854 ATHILA PF03078.10 g51478.t1 - 1.1E-015 57.1 0.6 9.8E-012 44.1 0.1 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:1290-2222 Augustus predicted protein sequence Tomato scaffold1615_contigs=2~1290-2222 DUF4283 PF14111.1 g68073.t1 - 0.00043 19.4 0 0.00064 18.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:344434-345286 Augustus predicted protein sequence Tomato scaffold2205_contigs=11~344434-345286 LigB PF02900.13 g39991.t1 - 0.1 11.5 0 0.1 11.5 0 1 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:29148-29784 Augustus predicted protein sequence Tomato scaffold1287_contigs=6~29148-29784 DUF612 PF04747.7 g82998.t1 - 0.012 14.5 8.2 0.014 14.3 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF612 | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:154374-154964 Augustus predicted protein sequence Tomato scaffold2753_contigs=11~154374-154964 CobT PF06213.7 g5491.t1 - 0.17 10.9 6.4 0.2 10.7 4.4 1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:81367-81642 Augustus predicted protein sequence Tomato scaffold329_contigs=2~81367-81642 Terpene_synth_C PF03936.11 g81256.t1 - 0.021 14 0.5 0.031 13.5 0.3 1.3 1 1 0 1 1 1 0 Terpene synthase family, metal binding domain | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:121747-123159 Augustus predicted protein sequence Tomato scaffold2725_contigs=9~121747-123159 Peptidase_S68 PF10461.4 g65252.t1 - 0.19 11.4 0.8 0.43 10.3 0.2 1.9 1 1 1 2 2 2 0 Peptidase S68 | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:57972-58187 Augustus predicted protein sequence Tomato scaffold2122_contigs=11~57972-58187 Tropomyosin PF00261.15 g50039.t1 - 0.012 14.6 2.3 0.016 14.2 1.6 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1554_contigs=1, transcript_loc=scaffold1554_contigs=1:7416-7724 Augustus predicted protein sequence Tomato scaffold1554_contigs=1~7416-7724 HTH_5 PF01022.15 g43604.t1 - 0.046 13.3 0.2 5.7 6.6 0 2.8 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:63319-73524 Augustus predicted protein sequence Tomato scaffold1389_contigs=6~63319-73524 IBV_3A PF03617.8 g34061.t1 - 0.04 13.6 0.2 0.076 12.7 0.2 1.4 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:262062-263289 Augustus predicted protein sequence Tomato scaffold1141_contigs=11~262062-263289 zf-CCHC PF00098.18 g2376.t1 - 0.00006 22.7 1 0.000091 22.2 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:120730-121107 Augustus predicted protein sequence Tomato scaffold235_contigs=2~120730-121107 DUF3285 PF11688.3 g29966.t1 - 0.16 11.5 0.7 0.42 10.2 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) | Ref_seq=scaffold1036_contigs=2, transcript_loc=scaffold1036_contigs=2:15647-16120 Augustus predicted protein sequence Tomato scaffold1036_contigs=2~15647-16120 MitMem_reg PF13012.1 g1269.t1 - 0.018 15.1 3.8 0.021 14.8 2.6 1.1 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:89750-89980 Augustus predicted protein sequence Tomato scaffold195_contigs=3~89750-89980 DUF1510 PF07423.6 g75581.t1 - 0.0053 16.1 5.5 0.0053 16.1 3.8 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1510) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:132383-134093 Augustus predicted protein sequence Tomato scaffold2602_contigs=46~132383-134093 TMEM151 PF14857.1 g1039.t1 - 0.058 11.9 0.5 4.5 5.7 0 2.1 1 1 1 2 2 2 0 TMEM151 family | Ref_seq=scaffold185_contigs=2, transcript_loc=scaffold185_contigs=2:12872-13273 Augustus predicted protein sequence Tomato scaffold185_contigs=2~12872-13273 zf-CCHC PF00098.18 g74559.t1 - 0.000096 22.1 1 0.00016 21.4 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:881-1432 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~881-1432 PilO PF04350.8 g87472.t1 - 0.0046 16.8 0 1.6 8.5 0 2 1 1 1 2 2 2 2 Pilus assembly protein, PilO | Ref_seq=scaffold3125_contigs=1, transcript_loc=scaffold3125_contigs=1:1-788 Augustus predicted protein sequence Tomato scaffold3125_contigs=1~1-788 DUF2894 PF11445.3 g49108.t1 - 0.0094 16.2 1.4 0.011 16 1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF2894) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:54966-55232 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~54966-55232 Integrin_alpha PF00357.15 g82647.t1 - 0.031 14 0.1 0.061 13.1 0 1.5 1 0 0 1 1 1 0 Integrin alpha cytoplasmic region | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:374395-376267 Augustus predicted protein sequence Tomato scaffold2746_contigs=8~374395-376267 MerR-DNA-bind PF09278.6 g58117.t1 - 0.0043 17.4 5 0.012 15.9 0.2 2.4 2 0 0 2 2 2 1 MerR, DNA binding | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:67269-67790 Augustus predicted protein sequence Tomato scaffold1844_contigs=20~67269-67790 DUF4088 PF13317.1 g37872.t1 - 0.058 12.7 0.3 0.082 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:116947-118540 Augustus predicted protein sequence Tomato scaffold1240_contigs=6~116947-118540 RVT_3 PF13456.1 g32355.t1 - 0.13 12 0 0.2 11.4 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:370411-370698 Augustus predicted protein sequence Tomato scaffold1103_contigs=14~370411-370698 Mcm10 PF09332.6 g75897.t1 - 0.016 14.6 0.9 0.017 14.4 0.7 1 1 0 0 1 1 1 0 Mcm10 replication factor | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:222702-222929 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~222702-222929 ComJ PF11033.3 g19586.t1 - 0.12 12 0 0.12 12 0 1.1 1 0 0 1 1 1 0 Competence protein J (ComJ) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:108917-109192 Augustus predicted protein sequence Tomato scaffold756_contigs=8~108917-109192 PRONE PF03759.8 g5351.t1 - 0.061 11.8 0.2 0.085 11.3 0.2 1.1 1 0 0 1 1 1 0 PRONE (Plant-specific Rop nucleotide exchanger) | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:125530-128436 Augustus predicted protein sequence Tomato scaffold325_contigs=5~125530-128436 CDC45 PF02724.9 g50126.t1 - 0.021 12.8 2.6 0.026 12.5 1.8 1.2 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:348774-351962 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~348774-351962 Alpha_GJ PF03229.8 g18996.t1 - 1.7 8.9 5 0.66 10.3 1.4 1.7 1 1 1 2 2 2 0 Alphavirus glycoprotein J | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:65061-65984 Augustus predicted protein sequence Tomato scaffold742_contigs=5~65061-65984 Nnf1 PF03980.9 g50203.t1 - 0.25 11.3 2.7 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 Nnf1 | Ref_seq=scaffold1558_contigs=4, transcript_loc=scaffold1558_contigs=4:38666-39040 Augustus predicted protein sequence Tomato scaffold1558_contigs=4~38666-39040 Amastin PF07344.6 g7506.t1 - 0.004 16.7 0 0.75 9.3 0 2 1 1 1 2 2 2 2 Amastin surface glycoprotein | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:68899-69585 Augustus predicted protein sequence Tomato scaffold403_contigs=6~68899-69585 Retrotrans_gag PF03732.12 g42151.t1 - 0.018 15.1 0 0.042 13.9 0 1.7 1 1 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:184718-185053 Augustus predicted protein sequence Tomato scaffold1348_contigs=7~184718-185053 PT PF04886.7 g75873.t1 - 0.14 11.5 1.6 0.2 10.9 0.3 1.8 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:140670-141161 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~140670-141161 zf-CCHC_4 PF14392.1 g31722.t1 - 0.000000001 37.8 0.9 1.8E-009 37.1 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1084_contigs=1, transcript_loc=scaffold1084_contigs=1:18373-23837 Augustus predicted protein sequence Tomato scaffold1084_contigs=1~18373-23837 NESP55 PF06390.7 g21924.t1 - 1.8 7.8 7.4 2 7.7 5.1 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:284407-284837 Augustus predicted protein sequence Tomato scaffold817_contigs=11~284407-284837 NOA36 PF06524.7 g47588.t1 - 0.28 10.4 3.6 0.39 9.9 2.5 1.1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:662777-668109 Augustus predicted protein sequence Tomato scaffold1496_contigs=26~662777-668109 DUF2702 PF10863.3 g44307.t1 - 0.047 13.4 2.9 0.068 12.8 2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2702) | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:36174-36581 Augustus predicted protein sequence Tomato scaffold1426_contigs=9~36174-36581 Tox-HNH-HHH PF15637.1 g79763.t1 - 0.11 12.2 0.2 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:529620-529967 Augustus predicted protein sequence Tomato scaffold2701_contigs=22~529620-529967 Imm22 PF15592.1 g82158.t1 - 0.084 13.1 0 0.11 12.8 0 1.1 1 0 0 1 1 1 0 Immunity protein 22 | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:528658-529029 Augustus predicted protein sequence Tomato scaffold2736_contigs=16~528658-529029 Trypan_PARP PF05887.6 g28307.t1 - 2.7 7.8 12.8 3.9 7.2 8.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:224069-224428 Augustus predicted protein sequence Tomato scaffold994_contigs=5~224069-224428 Mso1_C PF14477.1 g6572.t1 - 0.025 14.9 0.2 0.37 11.1 0 2.5 2 0 0 2 2 2 0 Membrane-polarising domain of Mso1 | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:197557-199692 Augustus predicted protein sequence Tomato scaffold378_contigs=5~197557-199692 UBN2 PF14223.1 g7726.t1 - 0.073 12.8 0 0.12 12.1 0 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:112759-114545 Augustus predicted protein sequence Tomato scaffold406_contigs=8~112759-114545 DUF3094 PF11293.3 g16814.t1 - 0.12 11.8 0 0.2 11.1 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:101044-101343 Augustus predicted protein sequence Tomato scaffold682_contigs=5~101044-101343 4HBT PF03061.17 g23276.t1 - 0.052 13.6 0.1 0.089 12.9 0.1 1.4 1 1 0 1 1 1 0 Thioesterase superfamily | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:13926-14207 Augustus predicted protein sequence Tomato scaffold855_contigs=1~13926-14207 HTH_35 PF13693.1 g38723.t1 - 0.067 12.9 0 0.093 12.5 0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:149820-151364 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~149820-151364 CENP-H PF05837.7 g29821.t1 - 0.048 13.8 4.4 0.081 13.1 2.9 1.6 1 1 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:195690-196614 Augustus predicted protein sequence Tomato scaffold1034_contigs=4~195690-196614 SMN PF06003.7 g24895.t1 - 1.3 8 8 1.7 7.6 5.6 1.4 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:8308-9051 Augustus predicted protein sequence Tomato scaffold904_contigs=3~8308-9051 BAR_2 PF10455.4 g77843.t1 - 0.036 12.9 4.6 0.049 12.5 3.2 1.1 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:578177-579321 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~578177-579321 CAP_N PF01213.14 g55293.t1 - 0.025 13.8 5.5 0.032 13.5 3.8 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:668645-669163 Augustus predicted protein sequence Tomato scaffold1740_contigs=20~668645-669163 AMP-binding_C_2 PF14535.1 g54063.t1 - 0.011 15.7 0.4 3.4 7.7 0 2.2 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain | Ref_seq=scaffold1713_contigs=7, transcript_loc=scaffold1713_contigs=7:580-3746 Augustus predicted protein sequence Tomato scaffold1713_contigs=7~580-3746 DNA_photolyase PF00875.13 g38717.t1 - 0.016 14.9 0.7 0.033 13.9 0.2 1.8 2 1 0 2 2 2 0 DNA photolyase | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:115305-116069 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~115305-116069 DUF466 PF04328.8 g87462.t1 - 0.11 12.2 0 0.24 11.2 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF466) | Ref_seq=scaffold3114_contigs=1, transcript_loc=scaffold3114_contigs=1:1-408 Augustus predicted protein sequence Tomato scaffold3114_contigs=1~1-408 zf-U11-48K PF05253.7 g7995.t1 - 0.1 12.3 0.6 0.25 11.1 0.4 1.6 1 0 0 1 1 1 0 U11-48K-like CHHC zinc finger | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:186259-188324 Augustus predicted protein sequence Tomato scaffold413_contigs=6~186259-188324 WXG100 PF06013.7 g50053.t1 - 0.057 13.4 0.4 0.096 12.6 0.2 1.3 1 0 0 1 1 1 0 Proteins of 100 residues with WXG | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:36988-39176 Augustus predicted protein sequence Tomato scaffold1555_contigs=12~36988-39176 Ig_J_chain PF15097.1 g21220.t1 - 0.0043 16.6 0.6 0.0064 16 0.4 1.3 1 0 0 1 1 1 1 Immunoglobulin J chain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:135705-136208 Augustus predicted protein sequence Tomato scaffold795_contigs=8~135705-136208 Troponin-I_N PF11636.3 g14358.t1 - 0.2 11.3 5.5 0.15 11.7 1.4 2.3 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:35292-35762 Augustus predicted protein sequence Tomato scaffold594_contigs=19~35292-35762 Ku_N PF03731.10 g40180.t1 - 0.091 12.1 0 0.12 11.7 0 1.2 1 1 0 1 1 1 0 Ku70/Ku80 N-terminal alpha/beta domain | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:25656-27955 Augustus predicted protein sequence Tomato scaffold1293_contigs=3~25656-27955 LURAP PF14854.1 g79347.t1 - 0.037 13.7 0.4 0.48 10.1 0.3 2.3 1 1 0 1 1 1 0 Leucine rich adaptor protein | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:51813-53472 Augustus predicted protein sequence Tomato scaffold2693_contigs=8~51813-53472 ATHILA PF03078.10 g276.t1 - 0.0052 15.4 0 0.092 11.3 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:59775-60902 Augustus predicted protein sequence Tomato scaffold17_contigs=4~59775-60902 PsbL PF02419.12 g68432.t1 - 0.051 13 0 0.13 11.7 0 1.6 1 0 0 1 1 1 0 PsbL protein | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:188633-189112 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~188633-189112 zf-C2H2_6 PF13912.1 g64061.t1 - 0.00011 22 0.6 0.00016 21.4 0.4 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger | Ref_seq=scaffold2052_contigs=6, transcript_loc=scaffold2052_contigs=6:82310-82912 Augustus predicted protein sequence Tomato scaffold2052_contigs=6~82310-82912 DUF690 PF05108.8 g58344.t1 - 0.097 11 0 0.11 10.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF690) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:144569-145037 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~144569-145037 Zn_Tnp_IS1 PF03811.8 g86439.t1 - 0.031 13.7 0.3 0.25 10.8 0 2.4 2 0 0 2 2 2 0 InsA N-terminal domain | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:40896-44056 Augustus predicted protein sequence Tomato scaffold2861_contigs=1~40896-44056 NAM-associated PF14303.1 g80821.t1 - 0.0095 16.2 5.5 0.014 15.7 3.8 1.3 1 1 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:490186-492009 Augustus predicted protein sequence Tomato scaffold2718_contigs=12~490186-492009 UPF0184 PF03670.8 g47723.t1 - 0.019 15.1 0.2 0.2 11.8 0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0184) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:269551-270241 Augustus predicted protein sequence Tomato scaffold1497_contigs=8~269551-270241 Nop52 PF05997.7 g56026.t1 - 0.087 12.2 0.2 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Nucleolar protein,Nop52 | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:359812-360527 Augustus predicted protein sequence Tomato scaffold1778_contigs=23~359812-360527 DUF3950 PF13132.1 g68665.t1 - 0.041 13.3 1.1 4.7 6.8 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3950) | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:246-6879 Augustus predicted protein sequence Tomato scaffold2224_contigs=19~246-6879 Nop14 PF04147.7 g39705.t1 - 0.0086 14 7.7 0.011 13.7 5.4 1.2 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:48144-50354 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~48144-50354 zf-CCHC PF00098.18 g86058.t1 - 0.00011 21.9 4.1 0.00011 21.9 2.9 2.5 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:50252-50937 Augustus predicted protein sequence Tomato scaffold2834_contigs=1~50252-50937 Nop14 PF04147.7 g26032.t1 - 1.5 6.6 11.7 2 6.2 8.1 1.2 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:205239-210853 Augustus predicted protein sequence Tomato scaffold942_contigs=10~205239-210853 DUF3919 PF13057.1 g80333.t1 - 0.16 11.4 0.9 0.25 10.8 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3919) | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:100245-103265 Augustus predicted protein sequence Tomato scaffold2710_contigs=7~100245-103265 Ral PF11058.3 g67129.t1 - 0.12 11.7 0 0.18 11.1 0 1.2 1 0 0 1 1 1 0 Antirestriction protein Ral | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:60362-60703 Augustus predicted protein sequence Tomato scaffold2175_contigs=10~60362-60703 DBD_Tnp_Mut PF03108.10 g3197.t1 - 1.4E-010 40.5 0 2.1E-010 40 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold263_contigs=4, transcript_loc=scaffold263_contigs=4:128183-130494 Augustus predicted protein sequence Tomato scaffold263_contigs=4~128183-130494 zf-CCHC PF00098.18 g37150.t1 - 0.021 14.7 0.3 0.035 14 0.2 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:481587-481997 Augustus predicted protein sequence Tomato scaffold1213_contigs=18~481587-481997 Pollen_Ole_e_I PF01190.12 g40857.t1 - 0.000021 24.2 0.1 0.000025 24 0.1 1.1 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:585498-585875 Augustus predicted protein sequence Tomato scaffold1310_contigs=21~585498-585875 SurA_N_3 PF13624.1 g75898.t1 - 0.03 14.2 0.2 0.048 13.6 0.1 1.3 1 0 0 1 1 1 0 SurA N-terminal domain | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:223425-225902 Augustus predicted protein sequence Tomato scaffold2613_contigs=60~223425-225902 NDUF_B5 PF09781.4 g26125.t1 - 0.11 11.7 0 0.14 11.4 0 1.1 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:118777-119761 Augustus predicted protein sequence Tomato scaffold943_contigs=4~118777-119761 PsbP PF01789.11 g78287.t1 - 0.000055 22.6 0.1 0.13 11.6 0 2.2 2 0 0 2 2 2 2 PsbP | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:13610-14718 Augustus predicted protein sequence Tomato scaffold2668_contigs=53~13610-14718 Borrelia_REV PF03978.8 g45618.t1 - 0.05 13.3 0.6 0.059 13.1 0.4 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:85044-85352 Augustus predicted protein sequence Tomato scaffold1455_contigs=11~85044-85352 Spc7_N PF15402.1 g31302.t1 - 1.2 7 7.7 1.3 6.9 5.3 1 1 0 0 1 1 1 0 N-terminus of kinetochore NMS complex subunit Spc7 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:451910-452681 Augustus predicted protein sequence Tomato scaffold1069_contigs=31~451910-452681 YicC_N PF03755.8 g85987.t1 - 0.094 12.6 0.1 0.14 12 0 1.3 1 0 0 1 1 1 0 YicC-like family, N-terminal region | Ref_seq=scaffold2831_contigs=1, transcript_loc=scaffold2831_contigs=1:12361-13511 Augustus predicted protein sequence Tomato scaffold2831_contigs=1~12361-13511 MT PF12777.2 g38952.t1 - 0.23 10.1 1.2 0.24 10 0.8 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor | Ref_seq=scaffold1259_contigs=1, transcript_loc=scaffold1259_contigs=1:68658-69403 Augustus predicted protein sequence Tomato scaffold1259_contigs=1~68658-69403 DUF1917 PF08939.5 g51373.t1 - 0.041 13.6 0.1 0.042 13.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:52610-53544 Augustus predicted protein sequence Tomato scaffold1613_contigs=9~52610-53544 TAT_ubiq PF07706.7 g53128.t1 - 0.074 13 0 76 3.3 0 3.7 4 0 0 4 4 4 0 Aminotransferase ubiquitination site | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:38020-38625 Augustus predicted protein sequence Tomato scaffold1675_contigs=9~38020-38625 MARVEL PF01284.18 g60175.t1 - 0.064 13 0.5 0.27 11 0.2 1.8 2 0 0 2 2 2 0 Membrane-associating domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:244848-245144 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~244848-245144 AvrD PF05655.6 g72506.t1 - 0.11 11.3 0 2.7 6.7 0 2 1 1 1 2 2 2 0 Pseudomonas avirulence D protein (AvrD) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:15494-16500 Augustus predicted protein sequence Tomato scaffold2404_contigs=8~15494-16500 Med12 PF09497.5 g46660.t1 - 0.13 12.2 0.2 0.25 11.3 0.1 1.6 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:73710-74326 Augustus predicted protein sequence Tomato scaffold1484_contigs=2~73710-74326 EF-hand_like PF09279.6 g47905.t1 - 0.071 13.1 0.6 0.097 12.7 0.4 1.3 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:37159-37479 Augustus predicted protein sequence Tomato scaffold1500_contigs=20~37159-37479 RXT2_N PF08595.6 g32828.t1 - 0.68 9.7 4.3 3.1 7.6 2.4 2 2 0 0 2 2 2 0 RXT2-like, N-terminal | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:110128-112290 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~110128-112290 ELMO_CED12 PF04727.8 g81480.t1 - 0.02 14.4 0.1 0.024 14.1 0 1.2 1 0 0 1 1 1 0 ELMO/CED-12 family | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:313394-314267 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~313394-314267 DUF1682 PF07946.9 g45251.t1 - 0.022 13.6 10.3 0.028 13.2 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:522386-523190 Augustus predicted protein sequence Tomato scaffold1445_contigs=10~522386-523190 DUF4628 PF15429.1 g23143.t1 - 0.94 8.8 9.6 0.078 12.3 2 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4628) | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:6764-9475 Augustus predicted protein sequence Tomato scaffold850_contigs=10~6764-9475 Sec23_BS PF08033.7 g28056.t1 - 0.13 12.8 0 0.13 12.7 0 1.2 1 0 0 1 1 1 0 Sec23/Sec24 beta-sandwich domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:168218-168439 Augustus predicted protein sequence Tomato scaffold990_contigs=6~168218-168439 Mg-por_mtran_C PF07109.6 g10694.t1 - 0.027 14.5 0.4 0.083 12.9 0.1 1.8 2 0 0 2 2 2 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:282887-283288 Augustus predicted protein sequence Tomato scaffold503_contigs=7~282887-283288 EF-hand_9 PF14658.1 g63334.t1 - 0.14 12 0.3 20 5.2 0 2.6 3 0 0 3 3 3 0 EF-hand domain | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:317793-318224 Augustus predicted protein sequence Tomato scaffold2034_contigs=16~317793-318224 RSF PF14876.1 g69927.t1 - 0.091 11.5 0.3 4.5 5.9 0 2 1 1 0 2 2 2 0 Respiratory growth transcriptional regulator | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:17323-18009 Augustus predicted protein sequence Tomato scaffold2317_contigs=23~17323-18009 TRAP_alpha PF03896.11 g70534.t1 - 0.73 8.7 4.3 1.7 7.5 1.5 2.1 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:232809-235856 Augustus predicted protein sequence Tomato scaffold2342_contigs=20~232809-235856 RNA_pol_Rpb2_4 PF04566.8 g48610.t1 - 0.00058 19.6 0.2 0.0016 18.1 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:475912-477979 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~475912-477979 zf-CCHC PF00098.18 g49117.t1 - 0.000055 22.8 0.7 0.000093 22.1 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:62504-63527 Augustus predicted protein sequence Tomato scaffold1526_contigs=3~62504-63527 UBN2_2 PF14227.1 g43134.t1 - 0.000012 24.8 0.3 0.0092 15.5 0 2.1 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:120150-122878 Augustus predicted protein sequence Tomato scaffold1383_contigs=8~120150-122878 FH2 PF02181.18 g14153.t1 - 0.15 10.9 0.1 0.29 9.9 0 1.4 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:145512-146297 Augustus predicted protein sequence Tomato scaffold586_contigs=6~145512-146297 Vitelline_membr PF10542.4 g62396.t1 - 0.043 13.4 0.8 0.16 11.5 0.5 2 1 0 0 1 1 1 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:1227-2001 Augustus predicted protein sequence Tomato scaffold1993_contigs=21~1227-2001 DUF4172 PF13776.1 g41519.t1 - 0.23 11.5 1.8 1.2 9.2 0 2.5 1 1 1 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1334_contigs=1, transcript_loc=scaffold1334_contigs=1:1344-2078 Augustus predicted protein sequence Tomato scaffold1334_contigs=1~1344-2078 Transposase_28 PF04195.7 g84726.t1 - 0.03 13.6 0.4 0.057 12.7 0.3 1.5 1 1 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:52310-53753 Augustus predicted protein sequence Tomato scaffold2778_contigs=1~52310-53753 DUF4592 PF15262.1 g54882.t1 - 0.45 11 2 1.8 9 1.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4592) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:68535-69159 Augustus predicted protein sequence Tomato scaffold1730_contigs=8~68535-69159 Toxin_23 PF08093.6 g43876.t1 - 2.3 8.2 12.2 12 5.9 0.2 3.6 4 0 0 4 4 4 0 Magi 5 toxic peptide family | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:198363-198991 Augustus predicted protein sequence Tomato scaffold1393_contigs=3~198363-198991 DUF2379 PF09543.5 g58515.t1 - 0.055 13.4 0.1 0.065 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:271886-275751 Augustus predicted protein sequence Tomato scaffold1863_contigs=15~271886-275751 Cut8_N PF14482.1 g54826.t1 - 0.056 13.4 3 0.72 9.8 0.9 3 2 0 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:144631-146138 Augustus predicted protein sequence Tomato scaffold1729_contigs=8~144631-146138 UNC119_bdg PF15435.1 g7575.t1 - 0.077 12.3 0 0.1 11.9 0 1.2 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:256667-256984 Augustus predicted protein sequence Tomato scaffold404_contigs=9~256667-256984 bPH_6 PF10756.4 g30230.t1 - 2.8 7.8 6.5 5.2 7 1.8 2.5 1 1 1 2 2 2 0 Bacterial PH domain | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:171996-172415 Augustus predicted protein sequence Tomato scaffold1040_contigs=3~171996-172415 HALZ PF02183.13 g36931.t1 - 0.71 9.6 5 0.58 9.9 2.4 1.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:161732-162496 Augustus predicted protein sequence Tomato scaffold1212_contigs=14~161732-162496 DUF765 PF05570.6 g1978.t1 - 3.7 7.5 8.8 3.3 7.7 1 2.4 2 0 0 2 2 2 0 Circovirus protein of unknown function (DUF765) | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:88457-88753 Augustus predicted protein sequence Tomato scaffold221_contigs=3~88457-88753 ATHILA PF03078.10 g64715.t1 - 0.0000061 25 0 0.000007 24.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:53316-53834 Augustus predicted protein sequence Tomato scaffold2090_contigs=6~53316-53834 Bap31 PF05529.7 g74669.t1 - 0.051 13 2.5 0.079 12.4 1.7 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:339691-340788 Augustus predicted protein sequence Tomato scaffold2568_contigs=17~339691-340788 DUF1199 PF06712.6 g48321.t1 - 0.061 13.1 0.2 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:333316-335443 Augustus predicted protein sequence Tomato scaffold1502_contigs=2~333316-335443 DUF1347 PF07079.6 g31610.t1 - 0.0085 14.3 0.1 0.01 14.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:26311-26772 Augustus predicted protein sequence Tomato scaffold1081_contigs=4~26311-26772 TSC22 PF01166.13 g60818.t1 - 0.038 13.9 0.4 0.064 13.2 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:450003-453651 Augustus predicted protein sequence Tomato scaffold1959_contigs=15~450003-453651 IFP_35_N PF07334.8 g45972.t1 - 0.012 15.5 4.6 1.6 8.7 0.1 2.4 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:434091-434600 Augustus predicted protein sequence Tomato scaffold1467_contigs=10~434091-434600 CppA_C PF14507.1 g6968.t1 - 0.12 12.6 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 CppA C-terminal | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:11988-12242 Augustus predicted protein sequence Tomato scaffold386_contigs=10~11988-12242 DivIC PF04977.10 g16401.t1 - 0.81 9.2 5.3 2.3 7.7 3.5 1.8 1 1 0 1 1 1 0 Septum formation initiator | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:80115-80342 Augustus predicted protein sequence Tomato scaffold670_contigs=7~80115-80342 NSP13 PF06460.7 g74905.t1 - 0.013 14.4 0.3 0.015 14.1 0.2 1.1 1 0 0 1 1 1 0 Coronavirus NSP13 | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:186216-186521 Augustus predicted protein sequence Tomato scaffold2574_contigs=6~186216-186521 eIF_4EBP PF05456.6 g18846.t1 - 0.14 11.8 0 0.23 11.1 0 1.4 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:702228-702718 Augustus predicted protein sequence Tomato scaffold731_contigs=13~702228-702718 Histone_HNS PF00816.16 g16479.t1 - 1.2 9.7 7.2 2.3 8.7 5 1.5 1 1 0 1 1 1 0 H-NS histone family | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:258422-258946 Augustus predicted protein sequence Tomato scaffold671_contigs=7~258422-258946 UCR_Fe-S_N PF10399.4 g19297.t1 - 0.34 10.1 0.1 0.34 10.1 0.1 1.8 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:17754-19083 Augustus predicted protein sequence Tomato scaffold751_contigs=13~17754-19083 DUF3617 PF12276.3 g43319.t1 - 0.23 10.8 1.4 0.27 10.6 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3617) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:21153-21900 Augustus predicted protein sequence Tomato scaffold1385_contigs=12~21153-21900 Choline_kinase PF01633.15 g39159.t1 - 0.03 13.8 1 0.04 13.4 0.7 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:147273-147812 Augustus predicted protein sequence Tomato scaffold1266_contigs=7~147273-147812 SlyX PF04102.7 g5735.t1 - 0.0067 16.7 6.2 0.0067 16.7 4.3 1.8 2 0 0 2 2 1 1 SlyX | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:15158-15610 Augustus predicted protein sequence Tomato scaffold338_contigs=10~15158-15610 Retrotrans_gag PF03732.12 g72645.t1 - 0.0034 17.4 0.2 0.0067 16.4 0.1 1.5 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:126501-126851 Augustus predicted protein sequence Tomato scaffold2412_contigs=16~126501-126851 BSP_II PF05432.6 g62255.t1 - 0.031 13.5 6.9 0.032 13.5 4.8 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:291273-291524 Augustus predicted protein sequence Tomato scaffold1986_contigs=11~291273-291524 DUF2100 PF09873.4 g84366.t1 - 0.076 12.4 0.1 0.083 12.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:179064-179357 Augustus predicted protein sequence Tomato scaffold2767_contigs=1~179064-179357 Hyccin PF09790.4 g34531.t1 - 0.06 12.1 7.5 2.5 6.8 0.6 2.9 1 1 2 3 3 3 0 Hyccin | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:136552-136863 Augustus predicted protein sequence Tomato scaffold1152_contigs=9~136552-136863 Chon_Sulph_att PF06566.6 g24910.t1 - 0.027 14.1 9.3 0.035 13.7 6.2 1.4 1 1 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:65722-66438 Augustus predicted protein sequence Tomato scaffold904_contigs=3~65722-66438 CCDC155 PF14662.1 g55642.t1 - 0.011 15.3 3.2 0.75 9.3 0.1 2.2 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:55349-55705 Augustus predicted protein sequence Tomato scaffold1759_contigs=3~55349-55705 Lipase_bact_N PF12262.3 g9533.t1 - 0.0037 16.5 0 0.012 14.8 0 1.7 1 1 1 2 2 2 1 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:46257-46943 Augustus predicted protein sequence Tomato scaffold461_contigs=4~46257-46943 DUF719 PF05334.8 g53159.t1 - 0.016 15.2 0.1 5.7 6.9 0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF719) | Ref_seq=scaffold1679_contigs=9, transcript_loc=scaffold1679_contigs=9:36199-37220 Augustus predicted protein sequence Tomato scaffold1679_contigs=9~36199-37220 RE_AccI PF09545.5 g14233.t1 - 0.11 10.9 0 0.13 10.7 0 1 1 0 0 1 1 1 0 AccI restriction endonuclease | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:445972-446817 Augustus predicted protein sequence Tomato scaffold586_contigs=6~445972-446817 Transposase_28 PF04195.7 g77782.t1 - 0.0069 15.6 0 0.012 14.9 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:356758-358380 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~356758-358380 DUF566 PF04484.7 g50038.t1 - 0.3 10.5 4.1 0.48 9.8 2.9 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF566) | Ref_seq=scaffold1554_contigs=1, transcript_loc=scaffold1554_contigs=1:5603-6767 Augustus predicted protein sequence Tomato scaffold1554_contigs=1~5603-6767 YdjO PF14169.1 g64578.t1 - 0.016 14.6 0.1 0.026 13.9 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:1070-1399 Augustus predicted protein sequence Tomato scaffold2078_contigs=12~1070-1399 DUF2360 PF10152.4 g680.t1 - 3.8 7.7 9.4 45 4.3 6.5 2.2 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:95678-97937 Augustus predicted protein sequence Tomato scaffold95_contigs=9~95678-97937 Ribosomal_S30AE PF02482.14 g73595.t1 - 0.21 12 3.5 0.27 11.7 2.4 1.2 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:170299-170616 Augustus predicted protein sequence Tomato scaffold2485_contigs=8~170299-170616 MRVI1 PF05781.7 g54329.t1 - 0.018 13.4 0.3 0.024 13 0.2 1.1 1 0 0 1 1 1 0 MRVI1 protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:5758-9805 Augustus predicted protein sequence Tomato scaffold1720_contigs=9~5758-9805 GcrA PF07750.6 g35141.t1 - 0.2 11.8 1.1 3.4 7.8 0.1 2.4 1 1 1 2 2 2 0 GcrA cell cycle regulator | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:389301-396405 Augustus predicted protein sequence Tomato scaffold1175_contigs=16~389301-396405 SIP PF04954.8 g9089.t1 - 0.068 13.5 0.2 0.13 12.6 0.1 1.5 1 0 0 1 1 1 0 Siderophore-interacting protein | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:69807-70208 Augustus predicted protein sequence Tomato scaffold446_contigs=6~69807-70208 DUF773 PF05600.7 g60142.t1 - 2.5 6.7 5.1 2.6 6.7 3.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF773) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:144182-144510 Augustus predicted protein sequence Tomato scaffold1942_contigs=6~144182-144510 DUF605 PF04652.11 g85901.t1 - 3.5 6.9 11.3 3.9 6.7 7.8 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:23853-24478 Augustus predicted protein sequence Tomato scaffold2827_contigs=1~23853-24478 Cytadhesin_P30 PF07271.6 g47172.t1 - 0.033 13.4 2 0.04 13.2 1.4 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:101389-101859 Augustus predicted protein sequence Tomato scaffold1492_contigs=3~101389-101859 NPBW PF15180.1 g2904.t1 - 0.089 12.4 0.5 0.14 11.8 0.4 1.2 1 0 0 1 1 1 0 Neuropeptides B and W | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:76154-79216 Augustus predicted protein sequence Tomato scaffold257_contigs=2~76154-79216 ThiF PF00899.16 g33022.t1 - 0.0046 16.7 0 0.0059 16.4 0 1.1 1 0 0 1 1 1 1 ThiF family | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:43829-44152 Augustus predicted protein sequence Tomato scaffold1111_contigs=7~43829-44152 RimM PF01782.13 g63640.t1 - 0.02 14.7 0.5 0.024 14.5 0.4 1.1 1 0 0 1 1 1 0 RimM N-terminal domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:854048-854257 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~854048-854257 DBD_Tnp_Mut PF03108.10 g68871.t1 - 0.000012 24.8 0.1 0.000023 23.8 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:231097-233177 Augustus predicted protein sequence Tomato scaffold2231_contigs=8~231097-233177 DUF3348 PF11828.3 g39694.t1 - 0.00017 21 1.5 0.066 12.6 0 2.1 1 1 0 2 2 2 2 Protein of unknown function (DUF3348) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:19939-21760 Augustus predicted protein sequence Tomato scaffold1276_contigs=9~19939-21760 FAM60A PF15396.1 g47091.t1 - 0.14 11.9 0 0.17 11.6 0 1.2 1 0 0 1 1 1 0 Protein Family FAM60A | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:438743-439417 Augustus predicted protein sequence Tomato scaffold1491_contigs=15~438743-439417 Trypan_PARP PF05887.6 g38719.t1 - 9.5 6 24.4 16 5.3 16.9 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:119281-119959 Augustus predicted protein sequence Tomato scaffold1250_contigs=10~119281-119959 SIP1 PF04938.7 g59634.t1 - 0.065 12.5 0.1 9.6 5.4 0 2.3 2 0 0 2 2 2 0 Survival motor neuron (SMN) interacting protein 1 (SIP1) | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:35074-36201 Augustus predicted protein sequence Tomato scaffold1928_contigs=20~35074-36201 Fez1 PF06818.10 g17376.t1 - 0.0033 17.4 2.2 0.0044 17 1.5 1.3 1 0 0 1 1 1 1 Fez1 | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:80256-81688 Augustus predicted protein sequence Tomato scaffold704_contigs=10~80256-81688 DUF2870 PF11069.3 g81466.t1 - 0.21 11.6 1.5 0.24 11.4 1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:269109-269312 Augustus predicted protein sequence Tomato scaffold2729_contigs=11~269109-269312 DBD_Tnp_Mut PF03108.10 g25638.t1 - 0.000000011 34.4 0 0.000000018 33.8 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:83013-83899 Augustus predicted protein sequence Tomato scaffold930_contigs=4~83013-83899 DUF4055 PF13264.1 g48686.t1 - 0.066 13.3 0.2 0.1 12.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:748327-751034 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~748327-751034 zf-CCHC PF00098.18 g86824.t1 - 0.0000065 25.8 0.2 0.000011 25 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2898_contigs=1, transcript_loc=scaffold2898_contigs=1:9878-10180 Augustus predicted protein sequence Tomato scaffold2898_contigs=1~9878-10180 HrpB4 PF09502.5 g63450.t1 - 0.026 13.7 0.5 0.034 13.3 0.3 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB4) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:26634-27637 Augustus predicted protein sequence Tomato scaffold2037_contigs=26~26634-27637 Stimulus_sens_1 PF13756.1 g48646.t1 - 0.016 15.5 0.1 0.02 15.2 0 1.1 1 0 0 1 1 1 0 Stimulus-sensing domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:597319-598235 Augustus predicted protein sequence Tomato scaffold1505_contigs=29~597319-598235 DUF2215 PF10225.4 g32926.t1 - 0.0026 17.2 2.6 0.003 17 1.8 1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:426745-427110 Augustus predicted protein sequence Tomato scaffold1109_contigs=8~426745-427110 ATG16 PF08614.6 g8240.t1 - 0.0012 18.6 5.9 0.0016 18.3 4.1 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:83543-84409 Augustus predicted protein sequence Tomato scaffold422_contigs=2~83543-84409 RVT_3 PF13456.1 g58353.t1 - 0.099 12.4 0 0.15 11.8 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:161865-163033 Augustus predicted protein sequence Tomato scaffold1857_contigs=11~161865-163033 Strep_SA_rep PF06696.6 g85321.t1 - 3.4 7.5 6.2 16 5.3 4.3 1.9 1 1 0 1 1 1 0 Streptococcal surface antigen repeat | Ref_seq=scaffold2799_contigs=1, transcript_loc=scaffold2799_contigs=1:87064-90530 Augustus predicted protein sequence Tomato scaffold2799_contigs=1~87064-90530 CENP-F_leu_zip PF10473.4 g20645.t1 - 0.012 15.4 2.4 0.02 14.7 1.7 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:111659-112794 Augustus predicted protein sequence Tomato scaffold777_contigs=4~111659-112794 Kinetocho_Slk19 PF12709.2 g30355.t1 - 0.014 15.4 0.7 0.014 15.4 0.5 1.5 2 0 0 2 2 2 0 Central kinetochore-associated | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:179287-179610 Augustus predicted protein sequence Tomato scaffold1042_contigs=14~179287-179610 Peptidase_C34 PF05413.6 g69586.t1 - 0.074 13.1 0 0.13 12.2 0 1.4 1 0 0 1 1 1 0 Putative closterovirus papain-like endopeptidase | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:186283-190734 Augustus predicted protein sequence Tomato scaffold2303_contigs=18~186283-190734 zf-CCHC_4 PF14392.1 g70299.t1 - 0.0074 15.9 0.7 0.015 14.9 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:384994-385706 Augustus predicted protein sequence Tomato scaffold2337_contigs=27~384994-385706 DUF4533 PF15047.1 g19865.t1 - 0.042 13.2 0.9 0.045 13.1 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4533) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:127695-128950 Augustus predicted protein sequence Tomato scaffold760_contigs=13~127695-128950 RVT_2 PF07727.9 g78108.t1 - 0.0038 16.2 0 0.0048 15.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:227753-229795 Augustus predicted protein sequence Tomato scaffold2666_contigs=11~227753-229795 DUF4596 PF15363.1 g30279.t1 - 4 7.4 6.4 1.3 9 0.4 2.9 1 1 1 3 3 3 0 Domain of unknown function (DUF4596) | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:82346-82810 Augustus predicted protein sequence Tomato scaffold1041_contigs=2~82346-82810 UBN2 PF14223.1 g68717.t1 - 0.00021 21 3.2 0.0019 17.9 0 2.9 2 1 1 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:76451-77114 Augustus predicted protein sequence Tomato scaffold2226_contigs=11~76451-77114 DUF1082 PF06449.6 g18212.t1 - 0.032 14.1 0.3 0.18 11.7 0 2.2 2 0 0 2 2 2 0 Mitochondrial domain of unknown function (DUF1082) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:780284-780673 Augustus predicted protein sequence Tomato scaffold720_contigs=9~780284-780673 ATP11 PF06644.6 g7105.t1 - 0.098 12.1 3.3 0.12 11.8 2.3 1 1 0 0 1 1 1 0 ATP11 protein | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:137262-139795 Augustus predicted protein sequence Tomato scaffold387_contigs=7~137262-139795 CDC45 PF02724.9 g14002.t1 - 0.0023 16 8.7 0.0027 15.8 6 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:173017-176433 Augustus predicted protein sequence Tomato scaffold583_contigs=2~173017-176433 DivIC PF04977.10 g24343.t1 - 0.084 12.3 1.4 0.14 11.6 1 1.4 1 0 0 1 1 1 0 Septum formation initiator | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:253252-254764 Augustus predicted protein sequence Tomato scaffold880_contigs=9~253252-254764 DUF4219 PF13961.1 g46167.t1 - 0.0000016 27.3 0.8 0.0000032 26.4 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:294538-298744 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~294538-298744 Herpes_US12 PF05363.7 g3552.t1 - 0.085 13.3 1.7 8.3 6.9 0.1 2.2 2 0 0 2 2 2 0 Herpesvirus US12 family | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:17649-18377 Augustus predicted protein sequence Tomato scaffold278_contigs=5~17649-18377 RVT_3 PF13456.1 g11159.t1 - 0.000038 23.3 0 0.00005 23 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold517_contigs=2, transcript_loc=scaffold517_contigs=2:66191-66409 Augustus predicted protein sequence Tomato scaffold517_contigs=2~66191-66409 DUF1682 PF07946.9 g25970.t1 - 0.01 14.7 3.2 0.012 14.5 2.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:113210-113602 Augustus predicted protein sequence Tomato scaffold941_contigs=6~113210-113602 Shugoshin_N PF07558.6 g8211.t1 - 0.025 14.2 0.5 2.2 8 0.1 2.3 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:12914-13372 Augustus predicted protein sequence Tomato scaffold422_contigs=2~12914-13372 RNA_pol_Rpb6 PF01192.17 g63238.t1 - 0.095 12.4 0 0.21 11.3 0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb6 | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:125870-131174 Augustus predicted protein sequence Tomato scaffold2032_contigs=5~125870-131174 NAS PF03059.11 g77793.t1 - 0.1 11.7 0 0.13 11.4 0 1.1 1 0 0 1 1 1 0 Nicotianamine synthase protein | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:383277-383723 Augustus predicted protein sequence Tomato scaffold2660_contigs=23~383277-383723 DBD_Tnp_Mut PF03108.10 g31873.t1 - 0.0019 17.7 0.8 0.0025 17.3 0.1 1.6 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:90702-91028 Augustus predicted protein sequence Tomato scaffold1091_contigs=17~90702-91028 Prp19_bind PF06991.6 g8667.t1 - 0.91 8.7 5.4 1.1 8.4 3.7 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:426122-426802 Augustus predicted protein sequence Tomato scaffold429_contigs=9~426122-426802 RPAP1_N PF08621.5 g8409.t1 - 0.12 11.9 0.3 0.28 10.7 0.2 1.6 1 0 0 1 1 1 0 RPAP1-like, N-terminal | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:112607-115081 Augustus predicted protein sequence Tomato scaffold426_contigs=7~112607-115081 NYD-SP28_assoc PF14775.1 g39485.t1 - 0.1 12.2 1 0.17 11.6 0.7 1.3 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:136297-136668 Augustus predicted protein sequence Tomato scaffold1271_contigs=3~136297-136668 FH2 PF02181.18 g23430.t1 - 0.0012 17.8 0.3 0.0013 17.6 0.2 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:181941-182354 Augustus predicted protein sequence Tomato scaffold859_contigs=6~181941-182354 RVT_3 PF13456.1 g36135.t1 - 0.0000059 25.9 0 4.7 7 0 4.1 4 0 0 4 4 4 3 Reverse transcriptase-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:448924-452026 Augustus predicted protein sequence Tomato scaffold1187_contigs=6~448924-452026 zf-CCHC PF00098.18 g6057.t1 - 0.00063 19.5 0.9 0.0011 18.8 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold349_contigs=3, transcript_loc=scaffold349_contigs=3:17695-18891 Augustus predicted protein sequence Tomato scaffold349_contigs=3~17695-18891 CENP-Q PF13094.1 g10975.t1 - 0.00092 19.2 2.1 0.001 19.1 1.5 1.1 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:115318-115707 Augustus predicted protein sequence Tomato scaffold510_contigs=5~115318-115707 SAGA-Tad1 PF12767.2 g1245.t1 - 0.0094 15.6 0.7 0.011 15.3 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:11406-11774 Augustus predicted protein sequence Tomato scaffold195_contigs=3~11406-11774 Trypan_PARP PF05887.6 g66580.t1 - 0.0095 15.7 11.8 0.01 15.6 8.2 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:128997-129324 Augustus predicted protein sequence Tomato scaffold2166_contigs=6~128997-129324 CAP_N PF01213.14 g78013.t1 - 0.0055 16 3.4 0.0055 16 2.4 1.2 1 0 0 1 1 1 1 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2662_contigs=2, transcript_loc=scaffold2662_contigs=2:66423-66970 Augustus predicted protein sequence Tomato scaffold2662_contigs=2~66423-66970 EBV-NA3 PF05009.7 g20880.t1 - 0.045 12.9 2.1 0.051 12.8 1.5 1.1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold782_contigs=17, transcript_loc=scaffold782_contigs=17:355124-355838 Augustus predicted protein sequence Tomato scaffold782_contigs=17~355124-355838 TSC21 PF15217.1 g32663.t1 - 0.078 12.6 0.3 0.11 12.1 0.2 1.3 1 1 0 1 1 1 0 TSC21 family | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:370290-372945 Augustus predicted protein sequence Tomato scaffold1108_contigs=23~370290-372945 LZ_Tnp_IS66 PF13007.2 g68433.t1 - 0.089 13.4 1.7 0.12 13 1.2 1.3 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:189360-190153 Augustus predicted protein sequence Tomato scaffold2212_contigs=10~189360-190153 DUF4286 PF14114.1 g27477.t1 - 0.057 13.7 0.7 0.37 11 0.5 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:234391-234846 Augustus predicted protein sequence Tomato scaffold980_contigs=13~234391-234846 GRP PF07172.6 g48993.t1 - 0.43 11 5.8 0.065 13.7 1.5 1.5 2 0 0 2 2 2 0 Glycine rich protein family | Ref_seq=scaffold1520_contigs=13, transcript_loc=scaffold1520_contigs=13:189941-190339 Augustus predicted protein sequence Tomato scaffold1520_contigs=13~189941-190339 BC10 PF06726.7 g24519.t1 - 0.12 12.4 0 0.17 11.9 0 1.2 1 0 0 1 1 1 0 Bladder cancer-related protein BC10 | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:11396-11665 Augustus predicted protein sequence Tomato scaffold886_contigs=4~11396-11665 Trehalase PF01204.13 g62882.t1 - 0.02 13.5 4.5 0.021 13.4 3.1 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:110468-110806 Augustus predicted protein sequence Tomato scaffold2012_contigs=13~110468-110806 Atg14 PF10186.4 g76833.t1 - 0.082 11.8 9.4 0.14 11 6.5 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:23513-27741 Augustus predicted protein sequence Tomato scaffold2641_contigs=5~23513-27741 RNase_H2-Ydr279 PF09468.5 g46275.t1 - 0.062 12.4 0.4 0.085 12 0.3 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:838310-839852 Augustus predicted protein sequence Tomato scaffold1477_contigs=17~838310-839852 DUF1347 PF07079.6 g66833.t1 - 0.093 10.9 0 0.098 10.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2171_contigs=2, transcript_loc=scaffold2171_contigs=2:27325-27651 Augustus predicted protein sequence Tomato scaffold2171_contigs=2~27325-27651 Adaptin_binding PF10199.4 g4961.t1 - 0.12 12.6 10.2 0.15 12.3 7.1 1.1 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:76636-77052 Augustus predicted protein sequence Tomato scaffold312_contigs=3~76636-77052 RNA_pol_3_Rpc31 PF11705.3 g4897.t1 - 0.69 9.8 5.8 0.69 9.8 4 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:1-204 Augustus predicted protein sequence Tomato scaffold311_contigs=5~1-204 DUF4328 PF14219.1 g23270.t1 - 0.042 13.1 0.2 0.053 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4328) | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:184115-184441 Augustus predicted protein sequence Tomato scaffold854_contigs=5~184115-184441 Ribosomal_60s PF00428.14 g72795.t1 - 0.11 12.8 0.7 0.17 12.3 0.5 1.3 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:122188-122764 Augustus predicted protein sequence Tomato scaffold2426_contigs=10~122188-122764 zf-CCHC PF00098.18 g46970.t1 - 0.000018 24.4 0.7 0.000029 23.7 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:963253-964331 Augustus predicted protein sequence Tomato scaffold1490_contigs=23~963253-964331 SLR1-BP PF07333.7 g65258.t1 - 0.015 15.5 0.4 0.018 15.2 0.3 1.1 1 0 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2123_contigs=4, transcript_loc=scaffold2123_contigs=4:15446-16344 Augustus predicted protein sequence Tomato scaffold2123_contigs=4~15446-16344 zf-CCHC PF00098.18 g14985.t1 - 0.0013 18.5 0.7 0.0013 18.5 0.5 3.3 5 0 0 5 5 5 1 Zinc knuckle | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:211147-211494 Augustus predicted protein sequence Tomato scaffold614_contigs=10~211147-211494 UBN2 PF14223.1 g14457.t1 - 0.0011 18.7 0.4 0.012 15.4 0.1 2.1 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:460516-460977 Augustus predicted protein sequence Tomato scaffold594_contigs=19~460516-460977 PapG_C PF03628.8 g87597.t1 - 0.0047 16.5 0 1.4 8.5 0 2.1 1 1 1 2 2 2 2 PapG chaperone-binding domain | Ref_seq=scaffold3388_contigs=1, transcript_loc=scaffold3388_contigs=1:1-1434 Augustus predicted protein sequence Tomato scaffold3388_contigs=1~1-1434 CASP_C PF08172.7 g54604.t1 - 0.017 14.1 2.9 0.89 8.5 0.5 2.1 1 1 1 2 2 2 0 CASP C terminal | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:188180-188765 Augustus predicted protein sequence Tomato scaffold1723_contigs=7~188180-188765 PRTase_2 PF15609.1 g49953.t1 - 0.012 14.9 0.1 1.7 7.9 0 2.2 2 0 0 2 2 2 0 Phosphoribosyl transferase | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:766222-768867 Augustus predicted protein sequence Tomato scaffold1550_contigs=16~766222-768867 DUF1347 PF07079.6 g42986.t1 - 0.088 11 0 0.091 10.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1379_contigs=3, transcript_loc=scaffold1379_contigs=3:36073-36504 Augustus predicted protein sequence Tomato scaffold1379_contigs=3~36073-36504