# target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target Description of the predicted protein with scaffold details Model Scaffold ID with Start and End Position of Predicted Protein Retrotrans_gag PF03732.12 g42914.t1 - 0.14 12.2 0 0.23 11.5 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:862747-863234 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~862747-863234 DUF4413 PF14372.1 g67868.t1 - 0.0039 17.1 1.4 0.0057 16.6 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold1457_contigs=5, transcript_loc=scaffold1457_contigs=5:80409-80871 Augustus predicted protein sequence Tobacco scaffold1457_contigs=5~80409-80871 Elong-fact-P_C PF09285.6 g123248.t1 - 0.12 11.7 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 Elongation factor P, C-terminal | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:171444-171821 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~171444-171821 AGT PF11440.3 g7094.t1 - 0.018 13.9 0 0.018 13.9 0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:24925-25161 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~24925-25161 IP_trans PF02121.13 g37802.t1 - 0.0037 16.4 0.6 0.0044 16.2 0.4 1.1 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:42878-43295 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~42878-43295 Delta_lysin PF05372.6 g80472.t1 - 0.09 12.1 0 0.13 11.6 0 1.2 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:77334-77546 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~77334-77546 DUF2360 PF10152.4 g21045.t1 - 0.033 14.4 3.1 0.047 13.9 2.1 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:317711-318184 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~317711-318184 PBP1_TM PF14812.1 g118209.t1 - 6.4 7.1 10.6 1200 -0.2 7.3 2.2 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:98896-99234 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~98896-99234 Tospo_nucleocap PF01533.11 g101112.t1 - 0.02 14.1 0 0.025 13.8 0 1.1 1 0 0 1 1 1 0 Tospovirus nucleocapsid protein | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:88144-88905 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~88144-88905 zf-CHC2 PF01807.15 g75733.t1 - 0.0082 15.6 1.2 0.01 15.3 0.8 1.1 1 0 0 1 1 1 1 CHC2 zinc finger | Ref_seq=scaffold1590_contigs=1, transcript_loc=scaffold1590_contigs=1:25636-25979 Augustus predicted protein sequence Tobacco scaffold1590_contigs=1~25636-25979 DUF3987 PF13148.1 g12618.t1 - 0.29 9.6 4.9 0.39 9.2 2.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:71355-73212 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~71355-73212 DUF2457 PF10446.4 g126129.t1 - 0.014 14.1 21.3 0.017 13.8 14.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:49712-49972 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~49712-49972 zf-RVT PF13966.1 g105407.t1 - 3E-011 43.4 1.5 1.1E-010 41.6 0.1 2.1 1 1 1 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:39278-40274 Augustus predicted protein sequence Tobacco scaffold2355_contigs=18~39278-40274 DUF3682 PF12446.3 g123477.t1 - 0.045 14 2.5 0.06 13.6 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3682) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:48116-49392 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~48116-49392 Sec-ASP3 PF15432.1 g51227.t1 - 0.074 13 0.6 1.7 8.6 0.2 2.2 1 1 1 2 2 2 0 Accessory Sec secretory system ASP3 | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:138996-140111 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~138996-140111 Ceramidase_alk PF04734.8 g75441.t1 - 0.041 11.7 0 0.054 11.3 0 1 1 0 0 1 1 1 0 Neutral/alkaline non-lysosomal ceramidase | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:403432-404399 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~403432-404399 DUF3619 PF12279.3 g50021.t1 - 0.11 12.5 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:67598-68193 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~67598-68193 zf-CCHC PF00098.18 g49472.t1 - 0.000002 27.4 0.9 0.0000029 26.9 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:609173-609484 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~609173-609484 Aldose_epim PF01263.15 g38156.t1 - 0.076 12.1 0.2 0.082 11.9 0.2 1 1 0 0 1 1 1 0 Aldose 1-epimerase | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:303035-303348 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~303035-303348 CTD PF12815.2 g94421.t1 - 0.17 12.2 1.7 0.31 11.4 0.7 1.7 1 1 0 1 1 1 0 Spt5 C-terminal nonapeptide repeat binding Spt4 | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:929390-930694 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~929390-930694 MAP65_ASE1 PF03999.7 g90158.t1 - 0.19 10.2 3.9 0.21 10.1 2.7 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:217962-219177 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~217962-219177 Tropomyosin PF00261.15 g81498.t1 - 0.0072 15.4 0 0.0085 15.2 0 1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:102218-102577 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~102218-102577 zf-CCHC PF00098.18 g61508.t1 - 0.00013 21.6 0.7 0.00013 21.6 0.5 1.5 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1334_contigs=1, transcript_loc=scaffold1334_contigs=1:986-1291 Augustus predicted protein sequence Tobacco scaffold1334_contigs=1~986-1291 rve PF00665.21 g50143.t1 - 0.058 13.5 0 0.1 12.7 0 1.4 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:375629-376872 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~375629-376872 ATHILA PF03078.10 g82799.t1 - 0.00000014 30.4 0 0.00000017 30.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:94158-94418 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~94158-94418 Vps5 PF09325.5 g93379.t1 - 0.78 8.9 5.5 0.084 12.1 0.9 1.4 2 0 0 2 2 2 0 Vps5 C terminal like | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:170708-171109 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~170708-171109 HAUS-augmin3 PF14932.1 g48041.t1 - 0.56 9.3 2.7 0.73 8.9 1.9 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:18188-18682 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~18188-18682 IFP_35_N PF07334.8 g51425.t1 - 0.16 11.9 0.3 0.16 11.9 0.2 2.5 3 0 0 3 3 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:4108-5288 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~4108-5288 HHH_8 PF14716.1 g95674.t1 - 0.035 14.2 0 0.05 13.7 0 1.4 1 1 0 1 1 1 0 Helix-hairpin-helix domain | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:58468-58710 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~58468-58710 Tnp_DNA_bind PF14706.1 g15648.t1 - 0.028 14.1 0.7 2.1 8.1 0 2.5 2 0 0 2 2 2 0 Transposase DNA-binding | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:9313-11556 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~9313-11556 DUF1666 PF07891.7 g97141.t1 - 0.039 13.3 0.1 0.05 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1666) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:91227-91559 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~91227-91559 XK-related PF09815.4 g123925.t1 - 0.063 12.2 1.5 0.064 12.2 0.7 1.3 1 1 0 1 1 1 0 XK-related protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:909349-909762 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~909349-909762 DUF4620 PF15399.1 g55813.t1 - 0.037 14.1 0.6 0.081 13 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4620) | Ref_seq=scaffold1230_contigs=3, transcript_loc=scaffold1230_contigs=3:10336-12045 Augustus predicted protein sequence Tobacco scaffold1230_contigs=3~10336-12045 5_3_exonuc_N PF02739.11 g109999.t1 - 0.12 11.7 0.2 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:140941-141246 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~140941-141246 BA14K PF07886.6 g119721.t1 - 0.041 13.5 2 0.73 9.5 0 2.4 2 0 0 2 2 2 0 BA14K-like protein | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:12764-15506 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~12764-15506 Turandot PF07240.6 g39680.t1 - 0.021 14.3 0 17 4.9 0 3 1 1 2 3 3 3 0 Stress-inducible humoral factor Turandot | Ref_seq=scaffold960_contigs=13, transcript_loc=scaffold960_contigs=13:52550-53268 Augustus predicted protein sequence Tobacco scaffold960_contigs=13~52550-53268 Myb_DNA-bind_3 PF12776.2 g44459.t1 - 0.0000011 29.2 0.1 0.0000014 28.8 0.1 1.1 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:136846-137883 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~136846-137883 VP9 PF09625.5 g70847.t1 - 0.039 13.7 0.4 0.52 10.1 0.3 2.1 1 1 1 2 2 2 0 VP9 protein | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:278161-278538 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~278161-278538 DUF2112 PF09885.4 g16573.t1 - 0.12 12 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2112) | Ref_seq=scaffold522_contigs=18, transcript_loc=scaffold522_contigs=18:74792-76147 Augustus predicted protein sequence Tobacco scaffold522_contigs=18~74792-76147 Tox-SHH PF15652.1 g43581.t1 - 0.014 16 0 0.014 16 0 1.2 1 0 0 1 1 1 0 HNH/Endo VII superfamily toxin with a SHH signature | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:66536-66853 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~66536-66853 TEP1_N PF05386.6 g112453.t1 - 0.041 13.3 0.1 0.13 11.7 0 1.9 2 0 0 2 2 2 0 TEP1 N-terminal domain | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:66656-67756 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~66656-67756 UPF0547 PF10571.4 g69117.t1 - 0.06 13 0.1 0.093 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:500278-501022 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~500278-501022 TMP_2 PF06791.8 g3838.t1 - 0.03 13.9 0.2 0.035 13.7 0.2 1.2 1 0 0 1 1 1 0 Prophage tail length tape measure protein | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:105007-105300 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~105007-105300 DUF4022 PF13214.1 g16906.t1 - 0.062 13.4 3 0.065 13.3 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4022) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:115816-116127 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~115816-116127 OSR1_C PF12202.3 g102868.t1 - 0.05 13.2 2.4 0.095 12.3 0.6 2 2 0 0 2 2 2 0 Oxidative-stress-responsive kinase 1 C terminal | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:75495-76887 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~75495-76887 Photo_RC PF00124.14 g81049.t1 - 0.043 12.8 0 0.052 12.5 0 1.1 1 0 0 1 1 1 0 Photosynthetic reaction centre protein | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:112471-115233 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~112471-115233 zf-CCHC PF00098.18 g106636.t1 - 0.00044 20 0.5 0.00066 19.4 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:251740-251973 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~251740-251973 PLRV_ORF5 PF01690.12 g32664.t1 - 0.6 9.2 2.1 0.77 8.8 1.5 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:645874-647325 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~645874-647325 FlxA PF14282.1 g55814.t1 - 0.017 15 0.2 0.02 14.8 0.1 1.1 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1230_contigs=3, transcript_loc=scaffold1230_contigs=3:13812-14042 Augustus predicted protein sequence Tobacco scaffold1230_contigs=3~13812-14042 SecA_DEAD PF07517.9 g126373.t1 - 0.1 11.8 0.9 0.13 11.5 0.1 1.4 1 1 0 2 2 2 0 SecA DEAD-like domain | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:77933-78211 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~77933-78211 Lactamase_B_4 PF13691.1 g27669.t1 - 0.013 14.9 0 0.02 14.3 0 1.3 1 0 0 1 1 1 0 tRNase Z endonuclease | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:81433-81696 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~81433-81696 DUF4044 PF13253.1 g107243.t1 - 1.1 8.4 4.3 2.1 7.5 3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1020614-1021060 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1020614-1021060 CRIC_ras_sig PF10534.4 g39913.t1 - 0.001 19 1.2 1.4 9 0 3 2 1 1 3 3 3 2 Connector enhancer of kinase suppressor of ras | Ref_seq=scaffold963_contigs=16, transcript_loc=scaffold963_contigs=16:7271-9630 Augustus predicted protein sequence Tobacco scaffold963_contigs=16~7271-9630 Ribosomal_60s PF00428.14 g34919.t1 - 1.1 9.6 7.6 12 6.4 0 2.3 2 0 0 2 2 2 0 60s Acidic ribosomal protein | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:70988-71572 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~70988-71572 ASF1_hist_chap PF04729.8 g126709.t1 - 0.092 12.3 0 0.11 12.1 0 1 1 0 0 1 1 1 0 ASF1 like histone chaperone | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:2377-2700 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~2377-2700 Toxin_47 PF15527.1 g102474.t1 - 0.064 13 0 0.073 12.8 0 1.1 1 0 0 1 1 1 0 Putative toxin 47 | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:84718-86448 Augustus predicted protein sequence Tobacco scaffold2251_contigs=17~84718-86448 zf-CCHC_5 PF14787.1 g88320.t1 - 0.041 13.3 0.4 0.083 12.3 0.3 1.5 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:83871-84275 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~83871-84275 ACT PF01842.20 g44123.t1 - 0.14 11.6 0 0.17 11.4 0 1.2 1 0 0 1 1 1 0 ACT domain | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:48553-48795 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~48553-48795 ATHILA PF03078.10 g11395.t1 - 0.000032 22.7 0.1 0.000039 22.4 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:177491-177880 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~177491-177880 DUF3644 PF12358.3 g98917.t1 - 0.087 13.1 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3644) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:38720-39997 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~38720-39997 TT_ORF2 PF02957.10 g66613.t1 - 0.21 12.3 3.1 0.22 12.2 0.8 1.9 1 1 1 2 2 2 0 TT viral ORF2 | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:225549-226225 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~225549-226225 PMD PF10536.4 g110139.t1 - 0.00062 18.8 0 0.00066 18.7 0 1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:54407-55715 Augustus predicted protein sequence Tobacco scaffold2526_contigs=3~54407-55715 Tra_M PF05261.6 g114143.t1 - 0.09 12.8 0.6 0.21 11.6 0.4 1.6 1 1 1 2 2 2 0 TraM protein, DNA-binding | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:34766-35242 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~34766-35242 DUF4653 PF15546.1 g38503.t1 - 0.074 12.3 0.2 0.074 12.3 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4653) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:102527-103025 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~102527-103025 DUF3432 PF11914.3 g130522.t1 - 5.2 7.1 11.8 0.34 10.9 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3432) | Ref_seq=scaffold4849_contigs=1, transcript_loc=scaffold4849_contigs=1:1-481 Augustus predicted protein sequence Tobacco scaffold4849_contigs=1~1-481 Prefoldin_3 PF13758.1 g95717.t1 - 0.17 11.6 3 10 5.9 0.4 2.9 2 1 1 3 3 3 0 Prefoldin subunit | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:164611-166613 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~164611-166613 KRTAP PF11759.3 g14881.t1 - 0.09 13 0.1 0.14 12.4 0.1 1.3 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:182723-183016 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~182723-183016 FH2 PF02181.18 g60248.t1 - 0.0066 15.3 0 0.0078 15.1 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:27819-28421 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~27819-28421 Peptidase_M8 PF01457.11 g30688.t1 - 0.015 13.6 0.1 0.016 13.5 0.1 1 1 0 0 1 1 1 0 Leishmanolysin | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:58230-58469 Augustus predicted protein sequence Tobacco scaffold778_contigs=11~58230-58469 DUF2215 PF10225.4 g71078.t1 - 0.0035 16.8 1.2 0.0039 16.6 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:3787-4239 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~3787-4239 DUF2509 PF10713.4 g98026.t1 - 0.0099 15.6 0 0.012 15.3 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2509) | Ref_seq=scaffold2150_contigs=4, transcript_loc=scaffold2150_contigs=4:982-1269 Augustus predicted protein sequence Tobacco scaffold2150_contigs=4~982-1269 DUF912 PF06024.7 g63172.t1 - 0.68 10 2.6 1.2 9.2 1.8 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:21627-22580 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~21627-22580 DUF4404 PF14357.1 g50566.t1 - 0.023 15 4 1.5 9.2 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:350446-350853 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~350446-350853 DUF2724 PF10893.3 g92705.t1 - 0.093 12.6 0.1 14 5.6 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2724) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:335423-336014 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~335423-336014 WRC PF08879.5 g4974.t1 - 0.04 13.5 1.9 0.11 12.1 1.3 1.7 1 0 0 1 1 1 0 WRC | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:13881-14540 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~13881-14540 DUF2624 PF11116.3 g77192.t1 - 0.11 13 0 0.17 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2624) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:89350-91360 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~89350-91360 DUF1661 PF07877.6 g39885.t1 - 0.00013 21.4 2.8 3.2 7.3 0 3.5 3 0 0 3 3 3 3 Protein of unknown function (DUF1661) | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:60811-63004 Augustus predicted protein sequence Tobacco scaffold962_contigs=5~60811-63004 DUF1853 PF08907.6 g45428.t1 - 0.091 11.9 0 0.11 11.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1853) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:424249-424744 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~424249-424744 SSB PF00436.20 g66115.t1 - 0.0076 16 0 0.008 16 0 1.1 1 0 0 1 1 1 1 Single-strand binding protein family | Ref_seq=scaffold1434_contigs=2, transcript_loc=scaffold1434_contigs=2:8205-8542 Augustus predicted protein sequence Tobacco scaffold1434_contigs=2~8205-8542 Xpo1 PF08389.7 g111078.t1 - 0.045 13.6 0.1 0.071 13 0.1 1.3 1 0 0 1 1 1 0 Exportin 1-like protein | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:31117-33235 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~31117-33235 Trehalase PF01204.13 g123255.t1 - 0.39 9.2 4.5 0.39 9.2 3.1 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:187558-187836 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~187558-187836 PSII PF00421.14 g124017.t1 - 0.092 11.3 0 0.12 10.9 0 1.1 1 0 0 1 1 1 0 Photosystem II protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1151504-1153441 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1151504-1153441 Tox-MPTase5 PF15641.1 g7931.t1 - 0.055 13.4 0.1 0.073 13 0.1 1.2 1 0 0 1 1 1 0 Metallopeptidase toxin 5 | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:152342-153097 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~152342-153097 Lipase_GDSL_2 PF13472.1 g66817.t1 - 0.05 13.7 0.1 1.1 9.3 0.1 2 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:18104-20295 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~18104-20295 DUF1919 PF08942.5 g64801.t1 - 0.059 12.7 0 0.081 12.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1919) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:192743-194618 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~192743-194618 OAD_gamma PF04277.8 g117137.t1 - 1.6 9.1 3.7 2.3 8.6 2.5 1.3 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:18282-18863 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~18282-18863 PPK2 PF03976.9 g32031.t1 - 0.052 12.8 0 0.062 12.5 0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:158953-159255 Augustus predicted protein sequence Tobacco scaffold802_contigs=3~158953-159255 Transposase_28 PF04195.7 g44078.t1 - 0.019 14.3 0 0.029 13.6 0 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1033_contigs=1, transcript_loc=scaffold1033_contigs=1:49152-50029 Augustus predicted protein sequence Tobacco scaffold1033_contigs=1~49152-50029 HNH PF01844.18 g74660.t1 - 0.067 13 0.2 0.25 11.2 0.1 2 2 0 0 2 2 2 0 HNH endonuclease | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:34510-35412 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~34510-35412 C2-set_2 PF08205.7 g60257.t1 - 0.018 14.9 0.8 0.049 13.5 0.4 1.8 1 1 1 2 2 2 0 CD80-like C2-set immunoglobulin domain | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:46419-47371 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~46419-47371 Ricin_B_lectin PF00652.17 g13024.t1 - 0.044 13.8 0 0.051 13.6 0 1.1 1 0 0 1 1 1 0 Ricin-type beta-trefoil lectin domain | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:176240-176782 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~176240-176782 DAP10 PF07213.6 g36579.t1 - 0.1 12.3 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 DAP10 membrane protein | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:38069-39770 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~38069-39770 Apc5 PF12862.2 g47521.t1 - 0.096 12.5 0.1 0.22 11.4 0 1.6 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 5 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:161546-161800 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~161546-161800 DUF3893 PF13032.1 g22228.t1 - 0.0085 16.2 0 0.0094 16 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3893) | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:24275-24643 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~24275-24643 zf-CCHC PF00098.18 g117215.t1 - 0.0012 18.6 0.6 0.0024 17.6 0.4 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:155579-155794 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~155579-155794 AAA_32 PF13654.1 g93849.t1 - 0.087 11.4 0 0.11 11.1 0 1.1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:61009-61386 Augustus predicted protein sequence Tobacco scaffold2033_contigs=2~61009-61386 DUF673 PF05054.7 g97222.t1 - 0.1 11.1 0.1 0.11 11 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF673) | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:34456-34680 Augustus predicted protein sequence Tobacco scaffold2130_contigs=1~34456-34680 UPF0561 PF10573.4 g17708.t1 - 1.8 8.4 4.4 0.69 9.7 0.5 2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:13425-14316 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~13425-14316 Pox_E6 PF04656.7 g40423.t1 - 0.14 10.3 0.1 0.16 10.1 0.1 1.1 1 0 0 1 1 1 0 Pox virus E6 protein | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:151766-152137 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~151766-152137 ATHILA PF03078.10 g95130.t1 - 0.00066 18.3 0.1 0.0012 17.4 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:181595-182331 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~181595-182331 Staphylokinase PF02821.11 g108848.t1 - 0.1 12.3 1.5 0.14 11.9 1 1.3 1 1 0 1 1 1 0 Staphylokinase/Streptokinase family | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:355228-355566 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~355228-355566 CSTF2_hinge PF14327.1 g115844.t1 - 0.079 13 0 0.2 11.7 0 1.6 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:87074-89735 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~87074-89735 Fer4_19 PF06902.6 g60071.t1 - 0.00099 18.8 2.5 0.0084 15.9 0 2.2 1 1 1 2 2 2 2 Divergent 4Fe-4S mono-cluster | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:209246-209503 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~209246-209503 DUF4219 PF13961.1 g85615.t1 - 0.000015 24.2 0.1 0.000024 23.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:180486-180713 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~180486-180713 zf-CCHC PF00098.18 g2608.t1 - 0.000054 22.9 1.7 0.000092 22.1 1.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:14867-15562 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~14867-15562 DUF1539 PF07560.6 g88911.t1 - 0.027 14.3 0.5 0.031 14.1 0.3 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1539) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:90304-90612 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~90304-90612 PAR1 PF06521.6 g59987.t1 - 0.071 12.6 0.1 0.09 12.3 0.1 1.1 1 0 0 1 1 1 0 PAR1 protein | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:8907-9170 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~8907-9170 AKNA PF12443.3 g126213.t1 - 0.031 14.2 1 0.056 13.4 0.7 1.4 1 0 0 1 1 1 0 AT-hook-containing transcription factor | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:71094-73903 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~71094-73903 3HCDH_N PF02737.13 g16195.t1 - 0.001 18.7 2.1 0.24 11 0.2 2.1 1 1 1 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:66292-66774 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~66292-66774 H-K_ATPase_N PF09040.6 g58493.t1 - 0.0047 16.9 1.3 0.0097 16 0.9 1.5 1 0 0 1 1 1 1 Gastric H+/K+-ATPase, N terminal domain | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:154703-155112 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~154703-155112 CaM-KIIN PF15170.1 g129250.t1 - 0.094 12.7 1.4 10 6.2 0 2.7 1 1 2 3 3 3 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold2930_contigs=1, transcript_loc=scaffold2930_contigs=1:11125-11376 Augustus predicted protein sequence Tobacco scaffold2930_contigs=1~11125-11376 Fim-adh_lectin PF09222.5 g129339.t1 - 0.057 12.7 0.7 0.073 12.3 0.5 1.1 1 0 0 1 1 1 0 Fimbrial adhesin F17-AG, lectin domain | Ref_seq=scaffold2941_contigs=1, transcript_loc=scaffold2941_contigs=1:13896-14732 Augustus predicted protein sequence Tobacco scaffold2941_contigs=1~13896-14732 NADH5_C PF06455.6 g55037.t1 - 0.011 15.1 0.6 16 4.8 0 3 2 1 1 3 3 3 0 NADH dehydrogenase subunit 5 C-terminus | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:423803-425733 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~423803-425733 NEMO PF11577.3 g114208.t1 - 0.13 12 0.7 0.29 10.8 0.5 1.6 1 1 0 1 1 1 0 NF-kappa-B essential modulator NEMO | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:241291-242571 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~241291-242571 Cnd1_N PF12922.2 g43628.t1 - 0.27 10.8 3.7 0.29 10.7 2.5 1.1 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1, N-term | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:193818-194045 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~193818-194045 CdhC PF03598.10 g70028.t1 - 0.11 10.9 0 0.13 10.7 0 1.1 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:115294-115742 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~115294-115742 MadM PF03818.8 g3688.t1 - 0.1 12.1 0.2 0.25 10.9 0 1.7 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit | Ref_seq=scaffold238_contigs=5, transcript_loc=scaffold238_contigs=5:164911-166177 Augustus predicted protein sequence Tobacco scaffold238_contigs=5~164911-166177 RVT_3 PF13456.1 g128029.t1 - 0.0017 18.1 0.1 0.0029 17.3 0.1 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:55195-55679 Augustus predicted protein sequence Tobacco scaffold2846_contigs=1~55195-55679 PsbP PF01789.11 g32570.t1 - 0.059 12.8 0 0.11 11.9 0 1.4 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:384435-385628 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~384435-385628 Strep_SA_rep PF06696.6 g1273.t1 - 2.8 7.8 5.5 11 5.8 3.8 2 1 1 0 1 1 1 0 Streptococcal surface antigen repeat | Ref_seq=scaffold156_contigs=1, transcript_loc=scaffold156_contigs=1:7566-8190 Augustus predicted protein sequence Tobacco scaffold156_contigs=1~7566-8190 CRCB PF02537.10 g56326.t1 - 0.063 13.1 0 0.094 12.6 0 1.2 1 0 0 1 1 1 0 CrcB-like protein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:454019-454891 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~454019-454891 RVT_3 PF13456.1 g55725.t1 - 0.0008 19.1 0 0.00093 18.9 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1223_contigs=14, transcript_loc=scaffold1223_contigs=14:3141-3398 Augustus predicted protein sequence Tobacco scaffold1223_contigs=14~3141-3398 DBD_Tnp_Mut PF03108.10 g55866.t1 - 0.0000049 26 0.2 0.0000066 25.5 0.2 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1235_contigs=3, transcript_loc=scaffold1235_contigs=3:22453-22934 Augustus predicted protein sequence Tobacco scaffold1235_contigs=3~22453-22934 bZIP_1 PF00170.16 g7148.t1 - 0.094 12.6 5.8 1 9.3 0.7 2.5 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:165258-165710 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~165258-165710 zf-CCHC PF00098.18 g66718.t1 - 0.0077 16.1 0.2 0.012 15.4 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:498643-499679 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~498643-499679 DUF4023 PF13215.1 g123406.t1 - 0.047 13.4 0 11 5.8 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4023) | Ref_seq=scaffold2758_contigs=5, transcript_loc=scaffold2758_contigs=5:50634-51056 Augustus predicted protein sequence Tobacco scaffold2758_contigs=5~50634-51056 DUF3778 PF12620.3 g125147.t1 - 0.074 12.6 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:182094-183431 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~182094-183431 Lactamase_B_3 PF13483.1 g41547.t1 - 0.082 12.6 0 0.086 12.5 0 1.1 1 0 0 1 1 1 0 Beta-lactamase superfamily domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:224037-224467 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~224037-224467 Med9 PF07544.8 g58650.t1 - 0.015 15 1.1 0.035 13.8 0.6 1.8 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:370047-370805 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~370047-370805 DUF3290 PF11694.3 g54873.t1 - 0.0061 16.3 0.1 0.0091 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3290) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:45824-46267 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~45824-46267 Taxilin PF09728.4 g63457.t1 - 0.053 12.6 0.1 0.064 12.3 0 1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:378160-378372 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~378160-378372 RVP_2 PF08284.6 g95957.t1 - 0.000015 24.9 0 0.000021 24.5 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:10996-11217 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~10996-11217 RVP_2 PF08284.6 g122241.t1 - 0.0063 16.4 0 0.0063 16.4 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:146471-146674 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~146471-146674 P2X_receptor PF00864.14 g36564.t1 - 0.054 12.1 0.1 0.059 12 0.1 1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:11806-12266 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~11806-12266 Glyco_hydro_63 PF03200.11 g50293.t1 - 0.096 10.5 0 0.11 10.2 0 1 1 0 0 1 1 1 0 Mannosyl oligosaccharide glucosidase | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:306380-307038 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~306380-307038 BSP PF04450.7 g27419.t1 - 0.0019 17.7 0 0.0021 17.5 0 1.1 1 0 0 1 1 1 1 Peptidase of plants and bacteria | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:38470-38808 Augustus predicted protein sequence Tobacco scaffold725_contigs=8~38470-38808 OMS28_porin PF03532.8 g103244.t1 - 0.12 11.4 0 0.17 10.9 0 1.1 1 0 0 1 1 1 0 OMS28 porin | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:188869-190734 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~188869-190734 SMN PF06003.7 g50100.t1 - 0.0074 15.4 2.2 0.0087 15.1 1.5 1.1 1 0 0 1 1 1 1 Survival motor neuron protein (SMN) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:282906-283645 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~282906-283645 Kinocilin PF15033.1 g41815.t1 - 0.089 12.3 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Kinocilin protein | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:40177-40667 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~40177-40667 HrpB7 PF09486.5 g115362.t1 - 0.085 12.7 0.1 0.1 12.5 0 1.1 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:169260-169978 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~169260-169978 BTV_NS2 PF04514.7 g2567.t1 - 0.69 8.7 12.6 0.84 8.4 8.7 1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:252064-252498 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~252064-252498 Ldr_toxin PF13940.1 g96827.t1 - 0.15 11.8 1.8 8.3 6.2 0.1 2.6 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:53093-53513 Augustus predicted protein sequence Tobacco scaffold2122_contigs=11~53093-53513 KfrA_N PF11740.3 g96492.t1 - 0.067 13.6 0 1.6 9.2 0 2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:149146-149427 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~149146-149427 ESPR PF13018.1 g72813.t1 - 0.07 12.7 0.6 1.2 8.8 0 2.5 2 0 0 2 2 2 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold1521_contigs=7, transcript_loc=scaffold1521_contigs=7:33530-35082 Augustus predicted protein sequence Tobacco scaffold1521_contigs=7~33530-35082 Phage_F PF02305.12 g41935.t1 - 0.016 13.7 0 0.019 13.4 0 1.1 1 0 0 1 1 1 0 Capsid protein (F protein) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:268248-269852 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~268248-269852 PAT1 PF09770.4 g37249.t1 - 4.4 5.4 13.5 5.1 5.2 9.4 1.2 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold916_contigs=9, transcript_loc=scaffold916_contigs=9:32918-34045 Augustus predicted protein sequence Tobacco scaffold916_contigs=9~32918-34045 hGDE_N PF14699.1 g60890.t1 - 0.033 14 0 0.044 13.6 0 1.3 1 0 0 1 1 1 0 N-terminal domain from the human glycogen debranching enzyme | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:513671-513994 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~513671-513994 Aldose_epim PF01263.15 g24422.t1 - 0.0069 15.5 0.2 0.008 15.3 0.1 1 1 0 0 1 1 1 1 Aldose 1-epimerase | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:152176-152456 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~152176-152456 Resistin PF06954.6 g93907.t1 - 0.0095 16.1 0.1 0.01 16.1 0.1 1.1 1 0 0 1 1 1 1 Resistin | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:104040-104300 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~104040-104300 AKAP2_C PF15304.1 g120031.t1 - 1.3 8.5 15.5 1.7 8.2 10.8 1.2 1 0 0 1 1 1 0 A-kinase anchor protein 2 C-terminus | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:282269-282493 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~282269-282493 CCAP PF11105.3 g46460.t1 - 0.07 12.8 0.3 0.091 12.4 0.2 1.3 1 1 0 1 1 1 0 Arthropod cardioacceleratory peptide 2a | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:473400-474308 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~473400-474308 Fiji_64_capsid PF05880.6 g92313.t1 - 0.1 10.9 0 0.11 10.7 0 1 1 0 0 1 1 1 0 Fijivirus 64 kDa capsid protein | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:258465-258725 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~258465-258725 Glyco_hydro_53 PF07745.8 g70633.t1 - 0.0037 16 1.5 0.0045 15.8 1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:704602-705387 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~704602-705387 DUF2167 PF09935.4 g99514.t1 - 0.066 12 0 0.073 11.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2167) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:728548-728835 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~728548-728835 DUF4426 PF14467.1 g82200.t1 - 0.066 13 0.1 0.094 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4426) | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:65977-66705 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~65977-66705 Secretogranin_V PF05281.6 g101103.t1 - 0.087 12.1 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 Neuroendocrine protein 7B2 precursor (Secretogranin V) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:77682-80247 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~77682-80247 Cas_DxTHG PF09455.5 g68760.t1 - 0.039 13.1 0 0.04 13 0 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:8419-8874 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~8419-8874 AKNA PF12443.3 g71689.t1 - 0.12 12.3 0.4 0.16 12 0.3 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:270114-270531 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~270114-270531 LRS4 PF10422.4 g99251.t1 - 0.066 12.5 1.3 0.075 12.3 0.9 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:143967-144719 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~143967-144719 BLVR PF06375.6 g961.t1 - 0.013 15.2 1 0.016 15 0.7 1.1 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold87_contigs=1, transcript_loc=scaffold87_contigs=1:13306-13878 Augustus predicted protein sequence Tobacco scaffold87_contigs=1~13306-13878 HAUS4 PF14735.1 g64255.t1 - 0.011 15 4.2 0.014 14.7 2.9 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:294929-295357 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~294929-295357 Tropomyosin_1 PF12718.2 g68582.t1 - 1.9 8.3 6.3 1.1 9 2 1.9 2 0 0 2 2 2 0 Tropomyosin like | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:525419-527119 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~525419-527119 PRCC PF10253.4 g52374.t1 - 0.06 14 3.6 0.074 13.7 2.5 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:123423-124381 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~123423-124381 Seryl_tRNA_N PF02403.17 g52358.t1 - 0.038 14 3.3 0.065 13.2 2.3 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:99040-99468 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~99040-99468 DUF4296 PF14129.1 g28453.t1 - 0.0066 16.5 0.4 0.017 15.2 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4296) | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:136042-136905 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~136042-136905 PBP_sp32 PF07222.7 g24019.t1 - 0.037 13.2 2.1 0.039 13.1 1.5 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold659_contigs=1, transcript_loc=scaffold659_contigs=1:13169-13543 Augustus predicted protein sequence Tobacco scaffold659_contigs=1~13169-13543 MmlI PF09448.5 g108761.t1 - 0.03 14 0.7 0.28 10.9 0.1 2.1 1 1 1 2 2 2 0 Methylmuconolactone methyl-isomerase | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:167498-171269 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~167498-171269 Cortex-I_coil PF09304.5 g127387.t1 - 0.0038 17.2 1.5 0.028 14.4 0.4 2.1 2 0 0 2 2 2 1 Cortexillin I, coiled coil | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:47258-48169 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~47258-48169 UBN2_2 PF14227.1 g80844.t1 - 0.077 12.5 0 0.1 12.1 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:167331-168996 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~167331-168996 RED_C PF07807.6 g126219.t1 - 0.032 14.4 0 0.037 14.2 0 1.2 1 0 0 1 1 1 0 RED-like protein C-terminal region | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:84386-84736 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~84386-84736 SSP160 PF06933.6 g117453.t1 - 0.099 10.6 0.5 0.14 10 0.3 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:188239-189614 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~188239-189614 KLRAQ PF10205.4 g37804.t1 - 0.14 12.1 2.4 2.6 8.1 0.2 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:46405-46899 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~46405-46899 NODP PF07684.7 g29173.t1 - 0.85 9.2 3.4 45 3.7 0.1 3.6 4 0 0 4 4 4 0 NOTCH protein | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:228131-229197 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~228131-229197 Dimer_Tnp_hAT PF05699.9 g29553.t1 - 0.13 11.8 0 0.19 11.3 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:201843-202070 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~201843-202070 DUF3565 PF12088.3 g78699.t1 - 0.0076 15.9 0.1 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3565) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:347-2253 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~347-2253 DUF3567 PF12091.3 g7316.t1 - 0.03 14.2 0.1 0.034 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:195962-196165 Augustus predicted protein sequence Tobacco scaffold311_contigs=5~195962-196165 SAP25 PF15476.1 g85027.t1 - 0.085 12.3 0.3 0.1 12.1 0.2 1.1 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP25 | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:54633-54908 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~54633-54908 zf-BED PF02892.10 g29710.t1 - 0.009 15.7 2.1 0.022 14.4 1.4 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:192301-192918 Augustus predicted protein sequence Tobacco scaffold765_contigs=9~192301-192918 Autoind_bind PF03472.10 g52764.t1 - 0.018 14.3 0.1 0.024 13.9 0.1 1.1 1 0 0 1 1 1 0 Autoinducer binding domain | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:992751-993329 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~992751-993329 DUF739 PF05339.6 g36522.t1 - 0.074 12.8 0.1 0.085 12.6 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF739) | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:184425-184631 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~184425-184631 HCMVantigenic_N PF12154.3 g58076.t1 - 0.11 12.4 0.4 0.26 11.1 0.3 1.7 1 0 0 1 1 1 0 Glycoprotein B N-terminal antigenic domain of HCMV | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:312928-313634 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~312928-313634 FH2 PF02181.18 g125644.t1 - 0.013 14.4 0.3 0.04 12.8 0.1 1.7 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:107111-107896 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~107111-107896 RVT_3 PF13456.1 g52283.t1 - 0.037 13.7 0.1 0.051 13.3 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1178_contigs=24, transcript_loc=scaffold1178_contigs=24:415896-416295 Augustus predicted protein sequence Tobacco scaffold1178_contigs=24~415896-416295 Transposase_28 PF04195.7 g36163.t1 - 0.033 13.4 0 0.033 13.4 0 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:401383-401779 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~401383-401779 CENP-F_leu_zip PF10473.4 g129742.t1 - 0.011 15.5 5.1 0.013 15.3 3.5 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold3044_contigs=1, transcript_loc=scaffold3044_contigs=1:1336-1623 Augustus predicted protein sequence Tobacco scaffold3044_contigs=1~1336-1623 Tropomyosin PF00261.15 g60666.t1 - 0.0051 15.9 10.6 0.0071 15.4 7.3 1.2 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:226262-226920 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~226262-226920 DUF3792 PF12670.2 g58655.t1 - 0.026 14.3 3.3 0.032 14.1 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:381169-381432 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~381169-381432 EPO_TPO PF00758.13 g44659.t1 - 0.11 12.1 0.1 0.17 11.4 0 1.3 1 1 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:113282-113503 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~113282-113503 Retrotrans_gag PF03732.12 g119051.t1 - 0.00027 20.9 0.2 0.00037 20.4 0.1 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:855519-856991 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~855519-856991 DUF1631 PF07793.6 g19027.t1 - 0.27 9.2 1.6 0.28 9.2 1.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:125694-125906 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~125694-125906 DUF4289 PF14121.1 g98757.t1 - 0.16 10.3 0.7 0.18 10.1 0.5 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4289) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:145388-145618 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~145388-145618 DHC_N2 PF08393.8 g79137.t1 - 0.0068 14.9 0.3 0.0088 14.5 0.2 1.1 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 2 | Ref_seq=scaffold1688_contigs=3, transcript_loc=scaffold1688_contigs=3:34432-35381 Augustus predicted protein sequence Tobacco scaffold1688_contigs=3~34432-35381 PBP_sp32 PF07222.7 g88905.t1 - 0.054 12.6 3.3 0.064 12.4 2.3 1 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:71200-72054 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~71200-72054 DUF3417 PF11897.3 g58904.t1 - 0.11 12.5 1.3 0.13 12.2 0.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3417) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:195631-197671 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~195631-197671 Cwf_Cwc_15 PF04889.7 g20802.t1 - 0.22 11.2 4.9 0.28 10.8 3.4 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:285637-286143 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~285637-286143 OEP PF02321.13 g72921.t1 - 0.13 11.8 0 0.2 11.1 0 1.2 1 0 0 1 1 1 0 Outer membrane efflux protein | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:24893-25423 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~24893-25423 DUF3484 PF11983.3 g12914.t1 - 0.15 12.9 1.3 0.22 12.3 0.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3484) | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:66934-67197 Augustus predicted protein sequence Tobacco scaffold436_contigs=4~66934-67197 DM PF00751.13 g113045.t1 - 0.0016 17.9 9.3 0.18 11.3 0.8 2.7 2 0 0 2 2 2 2 DM DNA binding domain | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:228752-229699 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~228752-229699 DUF3122 PF11320.3 g15660.t1 - 0.088 12.7 0 0.089 12.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:26706-26969 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~26706-26969 zf-CCHC PF00098.18 g14631.t1 - 0.000097 22.1 0.7 0.00019 21.2 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:179228-180247 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~179228-180247 SIC PF03482.8 g50185.t1 - 0.069 12.7 0 0.075 12.6 0 1 1 0 0 1 1 1 0 sic protein | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:87478-87942 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~87478-87942 Histone_HNS PF00816.16 g43947.t1 - 1 9.9 5.6 2.2 8.8 3.9 1.6 1 0 0 1 1 1 0 H-NS histone family | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:27622-28158 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~27622-28158 zf-CCHC PF00098.18 g100665.t1 - 0.0081 16 2.2 0.012 15.4 0.3 2.2 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:209698-210087 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~209698-210087 UBN2_2 PF14227.1 g110618.t1 - 0.041 13.4 0.1 0.054 13 0.1 1.5 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:113438-113862 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~113438-113862 SLEI_Leptospira PF07620.6 g15345.t1 - 0.1 12.4 0 0.16 11.7 0 1.3 1 0 0 1 1 1 0 SLEI | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:71346-71630 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~71346-71630 MULE PF10551.4 g64564.t1 - 0.0000017 28 0 0.0000019 27.9 0 1.2 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1388_contigs=6, transcript_loc=scaffold1388_contigs=6:33601-34096 Augustus predicted protein sequence Tobacco scaffold1388_contigs=6~33601-34096 PMD PF10536.4 g22828.t1 - 0.027 13.4 0 0.027 13.4 0 1.1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:473965-474243 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~473965-474243 Shisa PF13908.1 g41555.t1 - 0.000092 22.6 0.3 0.00015 22 0 1.5 1 1 1 2 2 2 1 Wnt and FGF inhibitory regulator | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:263505-263873 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~263505-263873 Pterin_4a PF01329.14 g62100.t1 - 0.025 14.3 0.1 0.032 13.9 0.1 1.3 1 0 0 1 1 1 0 Pterin 4 alpha carbinolamine dehydratase | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:400930-401184 Augustus predicted protein sequence Tobacco scaffold1345_contigs=14~400930-401184 DUF504 PF04457.7 g35162.t1 - 0.088 12.9 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF504) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:134329-136517 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~134329-136517 Cloacin_immun PF03513.9 g56368.t1 - 0.055 13.5 0.1 0.082 12.9 0.1 1.3 1 0 0 1 1 1 0 Cloacin immunity protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:18831-19854 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~18831-19854 QLQ PF08880.6 g122626.t1 - 0.61 9.5 4.2 0.92 8.9 0.1 2.7 1 1 1 2 2 2 0 QLQ | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:9405-10006 Augustus predicted protein sequence Tobacco scaffold2747_contigs=3~9405-10006 PIH1 PF08190.7 g20928.t1 - 0.06 12.7 0.3 0.079 12.3 0.2 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:86441-86884 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~86441-86884 MiaE_2 PF13794.1 g122577.t1 - 0.14 11.6 0 0.16 11.4 0 1.1 1 0 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:298493-298738 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~298493-298738 IRS PF02174.12 g63843.t1 - 0.02 14.4 0.1 0.026 14.1 0 1.1 1 0 0 1 1 1 0 PTB domain (IRS-1 type) | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:20679-20906 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~20679-20906 zf-CCHC PF00098.18 g20165.t1 - 0.0001 22 1 0.00018 21.2 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:219955-220563 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~219955-220563 DUF4450 PF14614.1 g111997.t1 - 0.039 13.1 0 5.1 6.1 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4450) | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:13366-17129 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~13366-17129 Lipase_bact_N PF12262.3 g19265.t1 - 0.028 13.6 0 0.055 12.6 0 1.5 1 1 0 1 1 1 0 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:110236-110760 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~110236-110760 CT47 PF15623.1 g30625.t1 - 0.037 13.7 14.8 0.048 13.3 10.3 1.1 1 0 0 1 1 1 0 Cancer/testis gene family 47 | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:42747-43872 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~42747-43872 Ish1 PF10281.4 g13384.t1 - 0.052 13.6 0.6 18 5.5 0 2.8 2 1 1 3 3 3 0 Putative stress-responsive nuclear envelope protein | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:81881-83672 Augustus predicted protein sequence Tobacco scaffold446_contigs=6~81881-83672 Tektin PF03148.9 g126674.t1 - 0.0053 15.3 0.4 0.0077 14.8 0.3 1.2 1 0 0 1 1 1 1 Tektin family | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:37706-39713 Augustus predicted protein sequence Tobacco scaffold2802_contigs=1~37706-39713 DUF1347 PF07079.6 g87682.t1 - 0.046 11.9 0.1 0.074 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:72544-73257 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~72544-73257 Toxin_34 PF08396.5 g82742.t1 - 0.1 13.1 3.6 0.12 12.9 2.5 1.2 1 0 0 1 1 1 0 Spider toxin omega agatoxin/Tx1 family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:12935-14536 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~12935-14536 ATHILA PF03078.10 g115166.t1 - 0.000058 21.8 0 0.000065 21.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:119508-119738 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~119508-119738 Med25_SD1 PF11235.3 g10101.t1 - 0.054 13.7 3 0.063 13.5 2.1 1.1 1 0 0 1 1 1 0 Mediator complex subunit 25 synapsin 1 | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:117537-117791 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~117537-117791 Dscam_C PF12355.3 g62131.t1 - 5.7 7.2 11.1 9.9 6.4 7.7 1.5 1 1 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:46202-46660 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~46202-46660 DUF2785 PF10978.3 g70116.t1 - 0.079 12.4 0 0.1 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:265566-265949 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~265566-265949 Red1 PF07964.6 g16534.t1 - 0.71 7.9 6.8 0.87 7.6 4.7 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:27290-27985 Augustus predicted protein sequence Tobacco scaffold519_contigs=1~27290-27985 DUF3251 PF11622.3 g77249.t1 - 0.11 11.8 0 0.82 9 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:181733-182206 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~181733-182206 GlutR_dimer PF00745.15 g92678.t1 - 0.052 13.4 1 0.082 12.8 0.7 1.3 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:271309-272370 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~271309-272370 DUF3132 PF11330.3 g63863.t1 - 0.12 12.1 0 0.14 12 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3132) | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:92209-94372 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~92209-94372 DUF1985 PF09331.6 g7623.t1 - 0.055 13.2 0 0.092 12.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:487622-488911 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~487622-488911 zf-CCHC PF00098.18 g36127.t1 - 0.029 14.2 6.4 0.52 10.3 0 2.8 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:323830-324229 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~323830-324229 CDK2AP PF09806.4 g10626.t1 - 0.095 12.9 4.3 0.19 11.9 3 1.5 1 1 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:17278-18062 Augustus predicted protein sequence Tobacco scaffold389_contigs=8~17278-18062 SRP-alpha_N PF04086.8 g80284.t1 - 0.84 8.9 12.1 1.1 8.5 8.4 1.1 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:66267-67648 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~66267-67648 MRP-L46 PF11788.3 g77502.t1 - 0.066 13.8 2.9 0.076 13.6 2 1.1 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:217042-217266 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~217042-217266 GRP PF07172.6 g85873.t1 - 0.00000012 32 33.6 0.000024 24.7 23.3 2.1 1 1 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:39050-40112 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~39050-40112 DUF3195 PF11424.3 g513.t1 - 0.0048 17 1.3 0.0066 16.6 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:59029-59331 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~59029-59331 YabP PF07873.6 g5398.t1 - 0.045 13.3 0 0.065 12.7 0 1.3 1 0 0 1 1 1 0 YabP family | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:169871-170188 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~169871-170188 YopR_core PF09025.5 g119192.t1 - 0.018 15 0.1 0.02 14.8 0 1.1 1 0 0 1 1 1 0 YopR Core | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:79053-79406 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~79053-79406 Adaptin_binding PF10199.4 g93831.t1 - 0.00073 19.8 7.6 0.00087 19.5 5.2 1.1 1 0 0 1 1 1 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:6548-8467 Augustus predicted protein sequence Tobacco scaffold2033_contigs=2~6548-8467 FliJ PF02050.11 g125972.t1 - 0.013 15.5 3.7 0.016 15.2 2.6 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:108636-109300 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~108636-109300 FH2 PF02181.18 g3535.t1 - 0.14 11 0 0.2 10.5 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:112276-114565 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~112276-114565 ATHILA PF03078.10 g81363.t1 - 0.019 13.5 0.8 0.02 13.5 0.6 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:97596-97856 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~97596-97856 RVT_3 PF13456.1 g119287.t1 - 0.0001 22 0 0.00016 21.4 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:274857-275553 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~274857-275553 UBN2 PF14223.1 g87400.t1 - 0.00041 20.1 0.4 1.7 8.4 0 3 3 0 0 3 3 3 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:1671-2669 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~1671-2669 DUF702 PF05142.7 g94241.t1 - 0.042 14 1.6 0.05 13.7 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF702) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:328534-328881 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~328534-328881 TFIIF_alpha PF05793.7 g125617.t1 - 0.4 9 23.7 0.41 8.9 16.4 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:72802-73074 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~72802-73074 Dehydrin PF00257.14 g74809.t1 - 0.0058 16.9 2.8 0.0066 16.7 1.9 1.1 1 0 0 1 1 1 1 Dehydrin | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:123390-123662 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~123390-123662 DUF4278 PF14105.1 g83498.t1 - 0.074 13 0 0.86 9.5 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4278) | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:113415-113985 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~113415-113985 TT_ORF2 PF02957.10 g103797.t1 - 2.8 8.6 8 32 5.2 0 2.1 1 1 1 2 2 2 0 TT viral ORF2 | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:69336-70189 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~69336-70189 CreD PF06123.7 g58686.t1 - 0.041 12.4 0.1 0.049 12.1 0.1 1.1 1 0 0 1 1 1 0 Inner membrane protein CreD | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:473046-474024 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~473046-474024 YdjO PF14169.1 g111278.t1 - 0.0034 16.7 0.1 0.0056 16.1 0 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:18956-19407 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~18956-19407 Tmemb_cc2 PF10267.4 g68640.t1 - 0.058 11.9 0 0.066 11.8 0 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:670868-673176 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~670868-673176 Trypan_PARP PF05887.6 g107276.t1 - 2.8 7.7 9.7 0.49 10.1 3.8 1.8 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1069684-1070197 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1069684-1070197 MMS19_C PF12460.3 g17055.t1 - 0.071 11.8 0 0.092 11.4 0 1 1 0 0 1 1 1 0 RNAPII transcription regulator C-terminal | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:373302-375605 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~373302-375605 V-set PF07686.12 g112404.t1 - 3 7.7 5.3 24 4.8 0.3 2.3 2 0 0 2 2 2 0 Immunoglobulin V-set domain | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:87845-89534 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~87845-89534 Spore_YtfJ PF09579.5 g90701.t1 - 0.048 13.5 0.1 0.059 13.2 0 1.1 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:878871-879122 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~878871-879122 GTSE1_N PF15259.1 g16045.t1 - 0.1 12.5 0.8 0.12 12.3 0.5 1.1 1 0 0 1 1 1 0 G-2 and S-phase expressed 1 | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:155915-156151 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~155915-156151 DUF1959 PF09218.5 g34880.t1 - 0.0098 15.6 0 0.014 15.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:22527-22868 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~22527-22868 FA_desaturase PF00487.19 g11765.t1 - 0.074 12.4 0 0.077 12.4 0 1 1 0 0 1 1 1 0 Fatty acid desaturase | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:107476-107679 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~107476-107679 DUF3618 PF12277.3 g20074.t1 - 0.14 12.2 0.1 1.8 8.6 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:47770-48015 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~47770-48015 SoxZ PF08770.6 g115492.t1 - 0.094 12.1 0.1 0.5 9.8 0 2.1 2 1 0 2 2 2 0 Sulphur oxidation protein SoxZ | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:509875-510288 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~509875-510288 UPF0183 PF03676.9 g113910.t1 - 0.14 10.7 0 0.15 10.6 0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0183) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:722609-723395 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~722609-723395 EGF_alliinase PF04863.8 g99570.t1 - 0.078 12.9 4 0.53 10.3 0 2.7 3 0 0 3 3 3 0 Alliinase EGF-like domain | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:8234-13241 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~8234-13241 DUF1515 PF07439.6 g39244.t1 - 0.025 14.4 1.5 0.14 11.9 1.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:198145-198581 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~198145-198581 Osteopontin PF00865.13 g89153.t1 - 0.036 13.2 0.2 0.04 13.1 0.1 1 1 0 0 1 1 1 0 Osteopontin | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:237272-237490 Augustus predicted protein sequence Tobacco scaffold1939_contigs=7~237272-237490 CDC14 PF08045.6 g42915.t1 - 0.073 12.1 0.3 0.085 11.9 0.2 1 1 0 0 1 1 1 0 Cell division control protein 14, SIN component | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:866720-866932 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~866720-866932 SLD3 PF08639.5 g93983.t1 - 0.027 13.1 4.9 0.031 12.9 3.4 1.2 1 0 0 1 1 1 0 DNA replication regulator SLD3 | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:341780-342370 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~341780-342370 Herpes_LMP2 PF07415.6 g77279.t1 - 0.069 11.7 2.4 0.073 11.6 1.6 1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:229798-230124 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~229798-230124 bZIP_1 PF00170.16 g113325.t1 - 0.38 10.7 5.8 3.6 7.6 2.9 2.7 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:89108-89983 Augustus predicted protein sequence Tobacco scaffold2625_contigs=4~89108-89983 RNase_H2-Ydr279 PF09468.5 g93183.t1 - 0.1 11.7 5.6 0.11 11.6 3.9 1.3 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:25888-27022 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~25888-27022 ATHILA PF03078.10 g119073.t1 - 0.0016 17 0 0.2 10.1 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:899348-899722 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~899348-899722 Delta_lysin PF05372.6 g517.t1 - 0.012 15 0.1 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold20_contigs=1, transcript_loc=scaffold20_contigs=1:1-288 Augustus predicted protein sequence Tobacco scaffold20_contigs=1~1-288 DUF605 PF04652.11 g118354.t1 - 1.5 8.1 13.2 1.7 7.9 9.1 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:522200-522751 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~522200-522751 Aha1_N PF09229.6 g104227.t1 - 0.088 12.6 0 0.1 12.4 0 1.1 1 0 0 1 1 1 0 Activator of Hsp90 ATPase, N-terminal | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:204705-205156 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~204705-205156 CALCOCO1 PF07888.6 g120063.t1 - 0.16 10.2 8.2 0.17 10.1 5.7 1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:362148-362627 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~362148-362627 Fucose_iso_N1 PF07881.7 g100117.t1 - 0.044 13.3 0 0.044 13.3 0 1.1 1 0 0 1 1 1 0 L-fucose isomerase, first N-terminal domain | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:87411-87802 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~87411-87802 DUF605 PF04652.11 g17738.t1 - 2.1 7.6 12.9 2.5 7.4 9 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:65197-68365 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~65197-68365 Toxin_16 PF07945.6 g11751.t1 - 0.2 11.3 0.4 0.2 11.3 0.3 1.8 2 0 0 2 2 2 0 Janus-atracotoxin | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:84672-85118 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~84672-85118 MNNL PF07657.8 g75917.t1 - 0.022 14.6 0.2 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 N terminus of Notch ligand | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:186896-189676 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~186896-189676 Dirigent PF03018.9 g55986.t1 - 0.12 11.8 0 0.24 10.8 0 1.5 1 0 0 1 1 1 0 Dirigent-like protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:305985-306654 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~305985-306654 Trypan_PARP PF05887.6 g12049.t1 - 6.7 6.5 15.2 13 5.5 10.5 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:314546-315037 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~314546-315037 DUF2695 PF10905.3 g82819.t1 - 0.11 12.2 1.1 16 5.3 0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2695) | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:132-1471 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~132-1471 Retrotrans_gag PF03732.12 g54718.t1 - 0.019 15 0 0.03 14.4 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:153979-154362 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~153979-154362 UBN2 PF14223.1 g118117.t1 - 0.000041 23.3 0.1 0.12 12.1 0 2 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:288491-288775 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~288491-288775 Nop14 PF04147.7 g55049.t1 - 3.5 5.4 11.2 3.3 5.5 7.8 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:451346-454144 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~451346-454144 DEC-1_N PF04625.8 g99943.t1 - 1.6 7.3 7.7 1.8 7.1 5.3 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:172861-173250 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~172861-173250 zf-BED PF02892.10 g12888.t1 - 0.0073 16 2.5 0.016 14.9 1.8 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:99518-100081 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~99518-100081 EF-hand_like PF09279.6 g82752.t1 - 0.003 17.5 1 0.0043 17 0.7 1.3 1 1 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:22141-22452 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~22141-22452 Trypan_PARP PF05887.6 g99893.t1 - 3.3 7.5 14.4 4.1 7.2 10 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:40533-41684 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~40533-41684 DUF1052 PF06319.7 g87128.t1 - 0.11 11.7 0.2 0.14 11.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:131013-131351 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~131013-131351 NapE PF06796.6 g92894.t1 - 0.92 8.8 3.9 1.4 8.3 2.7 1.2 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:125916-126140 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~125916-126140 ATPase_gene1 PF09527.5 g61889.t1 - 0.28 10.9 4.5 26 4.7 0 3.1 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) | Ref_seq=scaffold1343_contigs=14, transcript_loc=scaffold1343_contigs=14:539276-539551 Augustus predicted protein sequence Tobacco scaffold1343_contigs=14~539276-539551 DUF2543 PF10820.3 g37873.t1 - 0.082 12.9 0.5 0.28 11.2 0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2543) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:156649-159897 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~156649-159897 Gemini_mov PF01708.11 g129146.t1 - 0.00023 20.6 0.1 0.00023 20.6 0.1 1.3 2 0 0 2 2 2 1 Geminivirus putative movement protein | Ref_seq=scaffold2919_contigs=1, transcript_loc=scaffold2919_contigs=1:14025-14378 Augustus predicted protein sequence Tobacco scaffold2919_contigs=1~14025-14378 MULE PF10551.4 g111240.t1 - 0.033 14.3 1.6 0.11 12.7 0.2 2.1 2 0 0 2 2 2 0 MULE transposase domain | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:41367-42242 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~41367-42242 CENP-F_leu_zip PF10473.4 g12116.t1 - 0.001 18.9 7.2 0.0053 16.6 1.7 2 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:80992-81457 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~80992-81457 US22 PF02393.11 g17001.t1 - 0.094 12.7 0 0.19 11.7 0 1.5 1 0 0 1 1 1 0 US22 like | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:233281-234780 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~233281-234780 TAXi_N PF14543.1 g112070.t1 - 0.032 14.1 1.4 0.041 13.8 1 1.1 1 0 0 1 1 1 0 Xylanase inhibitor N-terminal | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:94220-94777 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~94220-94777 Yeast-kill-tox PF09207.6 g38281.t1 - 0.02 15.2 0.3 7.3 7 0 2.5 2 0 0 2 2 2 0 Yeast killer toxin | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:199342-202903 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~199342-202903 CDC45 PF02724.9 g67378.t1 - 0.023 12.7 13.9 0.025 12.6 9.7 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:169214-169555 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~169214-169555 Ribosomal_S28e PF01200.13 g67221.t1 - 0.11 12.1 0.2 5.5 6.8 0 2.7 3 0 0 3 3 3 0 Ribosomal protein S28e | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:813935-815830 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~813935-815830 DUF3136 PF11334.3 g47827.t1 - 0.02 14.2 0.1 0.05 13 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:250746-252520 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~250746-252520 CAF-1_p150 PF11600.3 g120006.t1 - 0.00078 18.8 23.8 0.001 18.5 16.5 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:237194-237793 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~237194-237793 DUF1111 PF06537.6 g36532.t1 - 0.039 12.2 0 0.039 12.2 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1111) | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:219892-220116 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~219892-220116 Malectin_like PF12819.2 g94317.t1 - 0.00093 18.3 0 0.001 18.2 0 1 1 0 0 1 1 1 1 Carbohydrate-binding protein of the ER | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:571897-572151 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~571897-572151 PTE PF02126.13 g45803.t1 - 0.072 12 0 0.093 11.7 0 1.1 1 0 0 1 1 1 0 Phosphotriesterase family | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:104700-105393 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~104700-105393 DUF4172 PF13776.1 g86717.t1 - 0.031 14.3 0.2 0.071 13.2 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:254635-255076 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~254635-255076 UNC119_bdg PF15435.1 g20840.t1 - 0.017 14.4 0 0.019 14.2 0 1 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:346888-348108 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~346888-348108 MHCassoc_trimer PF08831.5 g57630.t1 - 0.055 13.3 0.4 0.092 12.6 0.3 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:69000-69389 Augustus predicted protein sequence Tobacco scaffold1253_contigs=5~69000-69389 DUF3534 PF12053.3 g26336.t1 - 0.13 12.1 0 0.17 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:115903-116376 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~115903-116376 Laminin_I PF06008.9 g103750.t1 - 0.024 13.9 0.3 0.028 13.7 0.2 1.1 1 0 0 1 1 1 0 Laminin Domain I | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:75588-75830 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~75588-75830 zf-met PF12874.2 g42825.t1 - 2.7 8.3 4.5 140 2.8 0.1 3.5 3 0 0 3 3 3 0 Zinc-finger of C2H2 type | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:643178-644476 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~643178-644476 T2SE_Nter PF05157.10 g44921.t1 - 0.15 12.1 0 0.18 11.8 0 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:16894-17118 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~16894-17118 NPCBM_assoc PF10633.4 g30453.t1 - 0.09 12.8 0.1 0.13 12.3 0 1.2 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:843152-843481 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~843152-843481 RVT_3 PF13456.1 g47048.t1 - 0.00059 19.5 0 0.00073 19.2 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1084_contigs=1, transcript_loc=scaffold1084_contigs=1:23947-24171 Augustus predicted protein sequence Tobacco scaffold1084_contigs=1~23947-24171 zf-CCHC PF00098.18 g9855.t1 - 0.00017 21.3 1.2 0.00017 21.3 0.8 2.4 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:195934-196188 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~195934-196188 Ribosomal_60s PF00428.14 g30766.t1 - 2.8 8.3 9.1 3.9 7.9 6.3 1.2 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:80430-80747 Augustus predicted protein sequence Tobacco scaffold779_contigs=3~80430-80747 Herpes_DNAp_acc PF04929.7 g16517.t1 - 0.4 9.6 4 0.41 9.5 2.8 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold518_contigs=2, transcript_loc=scaffold518_contigs=2:38895-39464 Augustus predicted protein sequence Tobacco scaffold518_contigs=2~38895-39464 TRAPPC10 PF12584.3 g16462.t1 - 0.13 11.7 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Trafficking protein particle complex subunit 10, TRAPPC10 | Ref_seq=scaffold515_contigs=6, transcript_loc=scaffold515_contigs=6:193391-193705 Augustus predicted protein sequence Tobacco scaffold515_contigs=6~193391-193705 Chon_Sulph_att PF06566.6 g52144.t1 - 0.0005 19.7 11 0.0005 19.7 6.6 1.8 2 0 0 2 2 2 1 Chondroitin sulphate attachment domain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:522839-524328 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~522839-524328 EF-hand_like PF09279.6 g120193.t1 - 0.036 14 0.1 0.046 13.7 0.1 1.1 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:228628-228867 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~228628-228867 PBP_sp32 PF07222.7 g23069.t1 - 0.092 11.9 1.8 0.15 11.1 1.3 1.5 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:33242-34273 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~33242-34273 Delta_lysin PF05372.6 g8714.t1 - 0.067 12.5 0 0.13 11.6 0 1.5 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:55294-55908 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~55294-55908 Lzipper-MIP1 PF14389.1 g8917.t1 - 0.016 15.3 0 0.022 14.8 0 1.2 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:57379-57621 Augustus predicted protein sequence Tobacco scaffold346_contigs=1~57379-57621 TnpW PF14202.1 g16804.t1 - 0.011 15.2 0.1 0.016 14.8 0.1 1.3 1 0 0 1 1 1 0 Transposon-encoded protein TnpW | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:464149-464421 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~464149-464421 Tropomyosin PF00261.15 g104908.t1 - 0.00053 19.1 0.1 0.00055 19 0.1 1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:76184-76477 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~76184-76477 zf-CCHC PF00098.18 g72862.t1 - 0.0017 18.1 1.7 0.0036 17.1 1.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:43187-43495 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~43187-43495 TRAP-gamma PF07074.7 g54560.t1 - 0.047 13.2 3.1 0.071 12.6 2.1 1.2 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:139529-142349 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~139529-142349 Hexapep_2 PF14602.1 g77474.t1 - 0.25 10.9 1.4 19 4.9 0.1 2.3 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:143932-145950 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~143932-145950 CENP-F_leu_zip PF10473.4 g49715.t1 - 0.012 15.4 2.9 0.015 15.1 2 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:96443-96945 Augustus predicted protein sequence Tobacco scaffold1132_contigs=4~96443-96945 uDENN PF03456.13 g105187.t1 - 0.24 11.3 0.8 3.2 7.7 0.6 2.2 1 1 0 1 1 1 0 uDENN domain | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:516677-517361 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~516677-517361 zf-CCHC PF00098.18 g39374.t1 - 0.0000073 25.6 1.7 0.000011 25 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:26674-27051 Augustus predicted protein sequence Tobacco scaffold954_contigs=1~26674-27051 CDC45 PF02724.9 g77476.t1 - 0.0019 16.3 11.8 0.0019 16.3 8.2 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:152185-152568 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~152185-152568 PP28 PF10252.4 g128847.t1 - 0.062 13.3 0.3 0.12 12.4 0 1.6 2 0 0 2 2 2 0 Casein kinase substrate phosphoprotein PP28 | Ref_seq=scaffold2893_contigs=1, transcript_loc=scaffold2893_contigs=1:31113-31490 Augustus predicted protein sequence Tobacco scaffold2893_contigs=1~31113-31490 Syntaxin-6_N PF09177.6 g42398.t1 - 0.086 13.2 0.1 0.1 13 0 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:200949-202001 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~200949-202001 DUF3708 PF12501.3 g115834.t1 - 0.33 10.7 1.9 0.41 10.4 1.2 1.3 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:54567-55628 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~54567-55628 PP-binding PF00550.20 g56146.t1 - 0.025 14.8 0.1 0.044 14 0.1 1.5 1 0 0 1 1 1 0 Phosphopantetheine attachment site | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:148180-148728 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~148180-148728 HC2 PF07382.6 g74536.t1 - 0.00055 19.8 1.1 0.00063 19.6 0.8 1 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:111726-112034 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~111726-112034 UBN2_2 PF14227.1 g71988.t1 - 0.0000012 28 0.9 0.0000014 27.8 0.6 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:43424-43636 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~43424-43636 CENP-R PF06729.7 g35547.t1 - 0.00011 21.9 5.4 0.00012 21.7 3.5 1.3 1 1 0 1 1 1 1 Kinetochore component, CENP-R | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:25418-25855 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~25418-25855 zf-CCHC PF00098.18 g40407.t1 - 0.014 15.3 0.1 0.022 14.6 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:95918-96547 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~95918-96547 LZ_Tnp_IS66 PF13007.2 g28993.t1 - 2.4 8.8 5.2 4 8.1 3.6 1.7 1 1 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:191102-191954 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~191102-191954 NESP55 PF06390.7 g60213.t1 - 4.7 6.5 7.1 0.26 10.6 0.5 2 2 1 1 3 3 3 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:215885-216985 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~215885-216985 DUF4219 PF13961.1 g44613.t1 - 0.00096 18.5 0 0.0014 17.9 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:1996-2199 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~1996-2199 PRESAN PF09687.5 g41844.t1 - 0.00037 20.5 6.3 0.00047 20.2 4.4 1 1 0 0 1 1 1 1 Plasmodium RESA N-terminal | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:85815-86174 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~85815-86174 MRP PF09387.5 g120514.t1 - 0.052 13.2 0 0.093 12.4 0 1.4 1 0 0 1 1 1 0 Mitochondrial RNA binding protein MRP | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:124764-125957 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~124764-125957 Trypan_PARP PF05887.6 g19569.t1 - 8.8 6.1 19.2 9.8 5.9 13.3 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:38445-38657 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~38445-38657 MiaE_2 PF13794.1 g106204.t1 - 0.066 12.6 0 0.082 12.3 0 1 1 0 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:118603-119184 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~118603-119184 TAP_C PF03943.8 g74817.t1 - 0.13 11.7 0.1 0.22 10.9 0.1 1.5 1 0 0 1 1 1 0 TAP C-terminal domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:134136-134447 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~134136-134447 DUF2618 PF10940.3 g38586.t1 - 0.034 13.9 4.1 1.1 9.1 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2618) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:139504-139734 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~139504-139734 Tht1 PF04163.7 g77122.t1 - 0.039 12.3 0.1 0.04 12.3 0.1 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:59178-59489 Augustus predicted protein sequence Tobacco scaffold1626_contigs=2~59178-59489 Biotin_lipoyl_2 PF13533.1 g124302.t1 - 0.044 13.4 0.8 1 9 0.2 2.6 2 1 1 3 3 3 0 Biotin-lipoyl like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1885256-1885833 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1885256-1885833 MYT1 PF08474.6 g76128.t1 - 0.11 11.9 0.1 1.3 8.4 0 2 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:15798-16259 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~15798-16259 DUF3772 PF12607.3 g70322.t1 - 0.035 13.7 2.7 5 6.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3772) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:282271-283039 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~282271-283039 zf-CCHC PF00098.18 g103129.t1 - 0.021 14.7 0.1 0.031 14.1 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2302_contigs=9, transcript_loc=scaffold2302_contigs=9:3742-4077 Augustus predicted protein sequence Tobacco scaffold2302_contigs=9~3742-4077 Retrotrans_gag PF03732.12 g26849.t1 - 0.022 14.7 1.7 0.05 13.6 0.2 2.1 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:401590-402228 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~401590-402228 ATHILA PF03078.10 g27958.t1 - 0.0000084 24.6 0.1 0.00083 18 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:664595-665057 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~664595-665057 FeoC PF09012.5 g93006.t1 - 0.032 13.9 0.1 0.058 13.1 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:451090-451383 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~451090-451383 Vps52 PF04129.7 g97779.t1 - 0.038 12.5 0 0.05 12.1 0 1.1 1 0 0 1 1 1 0 Vps52 / Sac2 family | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:145742-147449 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~145742-147449 Dodecin PF07311.7 g41592.t1 - 0.1 12.6 1.4 0.15 12 1 1.3 1 1 0 1 1 1 0 Dodecin | Ref_seq=scaffold991_contigs=5, transcript_loc=scaffold991_contigs=5:12958-14049 Augustus predicted protein sequence Tobacco scaffold991_contigs=5~12958-14049 RVT_3 PF13456.1 g29963.t1 - 0.0028 17.3 0 0.0046 16.6 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:117285-122022 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~117285-122022 YesK PF14150.1 g107822.t1 - 0.041 13.9 0.5 0.074 13.1 0.3 1.4 1 0 0 1 1 1 0 YesK-like protein | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:200294-201156 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~200294-201156 UBN2 PF14223.1 g103205.t1 - 0.093 12.5 0.1 0.19 11.5 0.1 1.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:134043-136592 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~134043-136592 CDRT4 PF15213.1 g40102.t1 - 0.023 14.7 0.2 6.3 6.8 0 2.1 1 1 1 2 2 2 0 CMT1A duplicated region transcript 4 protein | Ref_seq=scaffold966_contigs=19, transcript_loc=scaffold966_contigs=19:96416-97133 Augustus predicted protein sequence Tobacco scaffold966_contigs=19~96416-97133 Ndr PF03096.9 g111922.t1 - 0.1 11 0 0.16 10.3 0 1.2 1 0 0 1 1 1 0 Ndr family | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:66253-68334 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~66253-68334 YWFCY PF14293.1 g125429.t1 - 0.022 14.5 0.1 6.3 6.7 0 2.2 2 0 0 2 2 2 0 YWFCY protein | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:91368-91916 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~91368-91916 PTN_MK_N PF05196.8 g1325.t1 - 0.13 12.2 0.2 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 PTN/MK heparin-binding protein family, N-terminal domain | Ref_seq=scaffold177_contigs=3, transcript_loc=scaffold177_contigs=3:623-841 Augustus predicted protein sequence Tobacco scaffold177_contigs=3~623-841 UPF0547 PF10571.4 g53435.t1 - 0.033 13.8 0.4 0.086 12.5 0.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:315724-316113 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~315724-316113 Lectin_N PF03954.9 g47178.t1 - 0.13 11.6 0 0.15 11.4 0 1.1 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:195790-196023 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~195790-196023 SEEK1 PF15357.1 g26443.t1 - 0.083 12.7 0 0.1 12.4 0 1.3 1 0 0 1 1 1 0 Psoriasis susceptibility 1 candidate 1 | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:77187-77597 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~77187-77597 Med9 PF07544.8 g35598.t1 - 0.062 13 0.9 5.1 6.8 0 3 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:169510-170569 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~169510-170569 PsbK PF02533.10 g6879.t1 - 0.062 13.2 0 0.11 12.4 0 1.4 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component | Ref_seq=scaffold305_contigs=7, transcript_loc=scaffold305_contigs=7:175438-176371 Augustus predicted protein sequence Tobacco scaffold305_contigs=7~175438-176371 EzrA PF06160.7 g106920.t1 - 0.12 10.5 0.1 0.15 10.1 0.1 1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:210207-211164 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~210207-211164 RVT_3 PF13456.1 g28239.t1 - 0.000000007 35.3 0.1 0.0012 18.6 0 2.4 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:19165-20114 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~19165-20114 Tail_tube PF10618.4 g72065.t1 - 0.0026 17.4 0 0.0049 16.5 0 1.5 1 0 0 1 1 1 1 Phage tail tube protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:205315-209317 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~205315-209317 PsbP PF01789.11 g40374.t1 - 0.089 12.2 0 0.14 11.6 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:248794-249376 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~248794-249376 RVT_3 PF13456.1 g74464.t1 - 0.00066 19.3 0.1 0.003 17.3 0 1.9 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:332688-333293 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~332688-333293 E_raikovi_mat PF06360.6 g87426.t1 - 0.12 12.6 2.8 10 6.4 0.1 2.2 2 0 0 2 2 2 0 Euplotes raikovi mating pheromone | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:57936-59002 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~57936-59002 DUF4219 PF13961.1 g113231.t1 - 0.09 12.2 0.5 0.14 11.6 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:131032-131496 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~131032-131496 DUF4644 PF15486.1 g834.t1 - 0.13 12.1 0.7 0.18 11.7 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4644) | Ref_seq=scaffold58_contigs=1, transcript_loc=scaffold58_contigs=1:1-381 Augustus predicted protein sequence Tobacco scaffold58_contigs=1~1-381 CAP_N PF01213.14 g55562.t1 - 0.12 11.5 4.4 0.15 11.3 3 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:421217-421672 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~421217-421672 DUF3974 PF13120.1 g15649.t1 - 0.028 14.2 4 0.038 13.8 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3974) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:12578-12994 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~12578-12994 DUF730 PF05325.6 g14775.t1 - 0.055 13.2 0.3 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF730) | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:171275-171571 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~171275-171571 DUF1635 PF07795.6 g22627.t1 - 0.024 13.9 0.7 0.045 13.1 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:10649-11904 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~10649-11904 Adaptin_binding PF10199.4 g20427.t1 - 0.08 13.2 3.4 0.089 13 2.3 1.1 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:261091-261492 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~261091-261492 Asr PF06392.6 g9671.t1 - 2.4 8.6 6.2 4 7.8 4.3 1.3 1 0 0 1 1 1 0 Acid shock protein repeat | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:39841-40179 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~39841-40179 ATHILA PF03078.10 g95195.t1 - 0.0015 17.2 0 0.0016 17.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:322682-322945 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~322682-322945 Prothymosin PF03247.9 g87510.t1 - 0.0024 17.9 10.9 0.0029 17.7 7.6 1.1 1 0 0 1 1 1 1 Prothymosin/parathymosin family | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:309651-310057 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~309651-310057 Resistin PF06954.6 g85106.t1 - 1.5 9.1 5.6 6.1 7.1 0 2.2 2 0 0 2 2 2 0 Resistin | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:239026-240239 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~239026-240239 Lycopene_cycl PF05834.7 g124632.t1 - 0.077 11.9 0.2 0.1 11.4 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:164627-165376 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~164627-165376 YchF-GTPase_C PF06071.8 g17346.t1 - 0.065 13 0 0.078 12.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF933) | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:226237-227104 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~226237-227104 ATHILA PF03078.10 g83545.t1 - 0.0045 15.6 0 0.0045 15.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:62702-62965 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~62702-62965 Dscam_C PF12355.3 g83536.t1 - 0.047 13.9 4.3 0.062 13.5 3 1.2 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:43789-44679 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~43789-44679 CLU_N PF15044.1 g1804.t1 - 0.01 15.9 12.5 13 6 0.2 5.4 2 1 4 6 6 6 0 Mitochondrial function, CLU-N-term | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:41216-41521 Augustus predicted protein sequence Tobacco scaffold194_contigs=2~41216-41521 DUF1265 PF06887.9 g106307.t1 - 0.12 12 0 0.21 11.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1265) | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:134061-134372 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~134061-134372 zf-CCHC PF00098.18 g83631.t1 - 0.00023 20.9 1 0.00043 20 0.7 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:37355-38593 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~37355-38593 B3 PF02362.16 g108598.t1 - 0.081 12.5 0 0.12 12 0 1.3 1 0 0 1 1 1 0 B3 DNA binding domain | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:1105600-1106524 Augustus predicted protein sequence Tobacco scaffold2444_contigs=49~1105600-1106524 Herpes_DNAp_acc PF04929.7 g59234.t1 - 0.22 10.4 1 0.24 10.3 0.7 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:17194-17577 Augustus predicted protein sequence Tobacco scaffold1285_contigs=4~17194-17577 DUF2457 PF10446.4 g112999.t1 - 0.084 11.5 27.8 0.087 11.5 19.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:127025-127378 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~127025-127378 CAP_N PF01213.14 g8749.t1 - 0.095 11.9 7.8 0.12 11.5 5.4 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:115016-115426 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~115016-115426 Ribosomal_L28 PF00830.14 g10948.t1 - 0.04 13.7 0 0.068 13 0 1.3 1 0 0 1 1 1 0 Ribosomal L28 family | Ref_seq=scaffold397_contigs=5, transcript_loc=scaffold397_contigs=5:1-978 Augustus predicted protein sequence Tobacco scaffold397_contigs=5~1-978 CDC45 PF02724.9 g18298.t1 - 0.0084 14.2 14.2 0.008 14.2 9.9 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:73188-74346 Augustus predicted protein sequence Tobacco scaffold549_contigs=4~73188-74346 zf-RING_2 PF13639.1 g4933.t1 - 0.11 12.3 0.3 0.24 11.2 0.2 1.6 1 0 0 1 1 1 0 Ring finger domain | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:155723-156034 Augustus predicted protein sequence Tobacco scaffold266_contigs=2~155723-156034 DUF3070 PF11270.3 g66402.t1 - 0.078 12.7 0 0.25 11.1 0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:29846-30412 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~29846-30412 DUF2411 PF10304.4 g66085.t1 - 0.086 12.4 0.1 0.13 11.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2411) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:295593-295820 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~295593-295820 PsbK PF02533.10 g84341.t1 - 0.091 12.7 1.3 0.15 12 0.9 1.3 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component | Ref_seq=scaffold1819_contigs=5, transcript_loc=scaffold1819_contigs=5:94843-95255 Augustus predicted protein sequence Tobacco scaffold1819_contigs=5~94843-95255 IFT57 PF10498.4 g28977.t1 - 0.014 14.1 8.4 0.014 14.1 5.8 1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:139819-140130 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~139819-140130 DUF2894 PF11445.3 g16535.t1 - 0.7 10.1 8.4 5.5 7.2 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:28086-29635 Augustus predicted protein sequence Tobacco scaffold519_contigs=1~28086-29635 NAM-associated PF14303.1 g97999.t1 - 0.015 15.6 2.1 0.023 15 1.5 1.3 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:38810-39028 Augustus predicted protein sequence Tobacco scaffold2148_contigs=3~38810-39028 zf-CCHC PF00098.18 g33182.t1 - 0.000068 22.5 1.7 0.00011 21.9 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold826_contigs=19, transcript_loc=scaffold826_contigs=19:32134-32811 Augustus predicted protein sequence Tobacco scaffold826_contigs=19~32134-32811 RVT_3 PF13456.1 g43032.t1 - 0.11 12.2 0 0.16 11.7 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:160506-160733 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~160506-160733 DBD_Tnp_Mut PF03108.10 g63630.t1 - 0.0012 18.4 0.8 0.0018 17.7 0.5 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1378_contigs=1, transcript_loc=scaffold1378_contigs=1:14153-14482 Augustus predicted protein sequence Tobacco scaffold1378_contigs=1~14153-14482 DUF3403 PF11883.3 g64875.t1 - 0.26 11.6 2.2 1.8 8.8 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3403) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:285052-285474 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~285052-285474 Connexin_CCC PF10582.4 g59507.t1 - 0.54 10.1 2.2 0.92 9.3 1.5 1.4 1 0 0 1 1 1 0 Gap junction channel protein cysteine-rich domain | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:228215-228901 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~228215-228901 Orbi_VP6 PF01516.11 g9276.t1 - 0.042 12.9 1.3 0.045 12.8 0.9 1 1 0 0 1 1 1 0 Orbivirus helicase VP6 | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:59818-61180 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~59818-61180 DNA_pol3_beta_3 PF02768.10 g67593.t1 - 0.037 13.5 0.4 0.051 13.1 0.3 1.2 1 0 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:14558-14884 Augustus predicted protein sequence Tobacco scaffold1450_contigs=4~14558-14884 Tmemb_170 PF10190.4 g7189.t1 - 0.041 13.9 1.6 0.075 13 0.1 2.2 1 1 1 2 2 2 0 Putative transmembrane protein 170 | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:55714-56710 Augustus predicted protein sequence Tobacco scaffold309_contigs=4~55714-56710 DUF2457 PF10446.4 g24909.t1 - 0.009 14.7 19 0.0098 14.6 13.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold681_contigs=2, transcript_loc=scaffold681_contigs=2:27424-28892 Augustus predicted protein sequence Tobacco scaffold681_contigs=2~27424-28892 HNF_C PF09354.5 g1537.t1 - 0.38 11.9 1.9 3.2 8.9 1.3 2.2 1 1 0 1 1 1 0 HNF3 C-terminal domain | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:248894-249271 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~248894-249271 DUF3487 PF11990.3 g75769.t1 - 0.0034 16.7 0.3 1.4 8.2 0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3487) | Ref_seq=scaffold1593_contigs=11, transcript_loc=scaffold1593_contigs=11:45097-45806 Augustus predicted protein sequence Tobacco scaffold1593_contigs=11~45097-45806 DBD_Tnp_Mut PF03108.10 g42608.t1 - 0.000019 24.1 0.1 0.000031 23.4 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:161225-161841 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~161225-161841 fn1 PF00039.13 g112995.t1 - 0.048 13.4 5.2 0.94 9.3 0.4 2.3 2 0 0 2 2 2 0 Fibronectin type I domain | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:124092-124427 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~124092-124427 A2M PF00207.17 g65708.t1 - 0.044 13.3 0 0.06 12.9 0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:135745-136179 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~135745-136179 TMP-TENI PF02581.12 g73516.t1 - 0.0082 15.2 0 0.0089 15.1 0 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI | Ref_seq=scaffold1541_contigs=9, transcript_loc=scaffold1541_contigs=9:12253-12667 Augustus predicted protein sequence Tobacco scaffold1541_contigs=9~12253-12667 zf-CCHC PF00098.18 g103077.t1 - 0.00014 21.6 0.3 0.00023 20.9 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:128343-128939 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~128343-128939 GlutR_dimer PF00745.15 g50743.t1 - 0.18 11.7 1.6 0.39 10.6 0.1 2.1 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:10150-10655 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~10150-10655 DUF3454 PF11936.3 g32432.t1 - 0.28 11.4 1.2 0.4 10.9 0.1 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3454) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:130539-130856 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~130539-130856 DGF-1_4 PF11024.3 g112726.t1 - 0.063 13.6 2.3 0.77 10.1 1.2 2.3 1 1 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 | Ref_seq=scaffold2616_contigs=5, transcript_loc=scaffold2616_contigs=5:27473-27871 Augustus predicted protein sequence Tobacco scaffold2616_contigs=5~27473-27871 Avidin PF01382.12 g121077.t1 - 0.018 15.3 0.1 0.024 14.9 0.1 1.1 1 0 0 1 1 1 0 Avidin family | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:326615-327090 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~326615-327090 CDC45 PF02724.9 g110690.t1 - 0.016 13.2 11.4 0.019 13 7.9 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:251412-255291 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~251412-255291 DUF515 PF04415.7 g1511.t1 - 0.16 10.1 0.3 0.24 9.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:171749-174871 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~171749-174871 MHCassoc_trimer PF08831.5 g68845.t1 - 0.062 13.1 1 0.15 11.9 0.7 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1482_contigs=3, transcript_loc=scaffold1482_contigs=3:33727-34775 Augustus predicted protein sequence Tobacco scaffold1482_contigs=3~33727-34775 Lysis_S PF04971.7 g118553.t1 - 0.13 11.9 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Lysis protein S | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:167730-168068 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~167730-168068 TMEM247 PF15444.1 g3632.t1 - 0.0062 16.3 2 0.0088 15.8 1.4 1.3 1 0 0 1 1 1 1 Transmembrane protein 247 | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:138008-139171 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~138008-139171 CD24 PF14984.1 g127991.t1 - 0.11 12.3 0.2 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 CD24 protein | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:17364-17726 Augustus predicted protein sequence Tobacco scaffold2845_contigs=1~17364-17726 Periviscerokin PF08259.6 g111898.t1 - 0.35 11 1.9 40 4.7 0.1 3 2 0 0 2 2 2 0 Periviscerokinin family | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:49971-50477 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~49971-50477 Na_Ca_ex PF01699.19 g58701.t1 - 0.014 14.9 0.2 0.034 13.7 0.1 1.7 2 0 0 2 2 2 0 Sodium/calcium exchanger protein | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:525090-526162 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~525090-526162 Omega-toxin PF06357.6 g121973.t1 - 0.066 12.7 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 Omega-atracotoxin | Ref_seq=scaffold2739_contigs=11, transcript_loc=scaffold2739_contigs=11:205897-206579 Augustus predicted protein sequence Tobacco scaffold2739_contigs=11~205897-206579 AT_hook PF02178.14 g115562.t1 - 0.13 12 2.8 0.22 11.2 1.9 1.5 1 0 0 1 1 1 0 AT hook motif | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:657700-659993 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~657700-659993 CUE PF02845.11 g892.t1 - 0.1 12 0 0.16 11.4 0 1.3 1 0 0 1 1 1 0 CUE domain | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:66402-66728 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~66402-66728 Vitelline_membr PF10542.4 g92541.t1 - 0.043 13.4 0.8 0.16 11.5 0.5 2 1 0 0 1 1 1 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:1227-2001 Augustus predicted protein sequence Tobacco scaffold1993_contigs=21~1227-2001 PH_9 PF15410.1 g119007.t1 - 0.079 13.1 0.1 0.098 12.8 0 1.2 1 0 0 1 1 1 0 Pleckstrin homology domain | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:770102-770727 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~770102-770727 Phage_int_SAM_5 PF13102.1 g74128.t1 - 0.13 12.2 2.1 0.15 12 1.5 1 1 0 0 1 1 1 0 Phage integrase SAM-like domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:588011-588322 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~588011-588322 Phage_endo_I PF05367.6 g76311.t1 - 0.014 14.8 0 0.018 14.4 0 1.2 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:151844-152179 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~151844-152179 HALZ PF02183.13 g10083.t1 - 0.001 18.7 6.9 0.18 11.5 0.3 2.5 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:87265-87633 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~87265-87633 ATHILA PF03078.10 g59937.t1 - 0.00033 19.3 0 0.00034 19.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:218019-218288 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~218019-218288 NIT PF08376.5 g10588.t1 - 0.052 13 0 0.055 12.9 0 1.1 1 0 0 1 1 1 0 Nitrate and nitrite sensing | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:326186-327067 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~326186-327067 DDHD PF02862.12 g56472.t1 - 0.13 12 2.7 0.14 11.9 1.9 1 1 0 0 1 1 1 0 DDHD domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:217214-217534 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~217214-217534 CENP-B_dimeris PF09026.5 g37287.t1 - 0.024 14.8 5.3 0.042 14 3.7 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold920_contigs=3, transcript_loc=scaffold920_contigs=3:13804-15184 Augustus predicted protein sequence Tobacco scaffold920_contigs=3~13804-15184 ATHILA PF03078.10 g116401.t1 - 0.00000095 27.7 0 0.00000096 27.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:272224-272466 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~272224-272466 AGT PF11440.3 g49942.t1 - 0.046 12.5 0.6 0.14 11 0.4 1.7 1 1 1 2 2 2 0 DNA alpha-glucosyltransferase | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:425324-426102 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~425324-426102 PMD PF10536.4 g28520.t1 - 0.000019 23.8 0.5 0.000019 23.8 0.4 1.7 2 0 0 2 2 2 1 Plant mobile domain | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:104567-105699 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~104567-105699 DUF3595 PF12166.3 g94086.t1 - 0.086 11.6 0 0.096 11.4 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3595) | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:217696-218062 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~217696-218062 DUF3046 PF11248.3 g21603.t1 - 0.15 12 0 0.22 11.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3046) | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:121663-122025 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~121663-122025 DUF1682 PF07946.9 g96206.t1 - 0.0009 18.1 0.5 0.0011 17.9 0.3 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:105948-106340 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~105948-106340 DUF342 PF03961.8 g85889.t1 - 0.092 11.1 1 0.11 10.9 0.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:67908-68375 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~67908-68375 M PF02370.11 g51807.t1 - 4.3 8 9.7 0.44 11 3 2.3 2 0 0 2 2 2 0 M protein repeat | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:277423-278093 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~277423-278093 DUF4283 PF14111.1 g113369.t1 - 0.0000068 25.2 0 0.000018 23.8 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:87396-90545 Augustus predicted protein sequence Tobacco scaffold2628_contigs=7~87396-90545 Adipogenin PF15202.1 g76686.t1 - 0.11 12.3 0.1 0.16 11.8 0.1 1.2 1 0 0 1 1 1 0 Adipogenin | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:98454-98732 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~98454-98732 Apelin PF15360.1 g106003.t1 - 0.087 13 0.3 0.13 12.5 0.2 1.2 1 0 0 1 1 1 0 APJ endogenous ligand | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1407757-1408579 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~1407757-1408579 EF-hand_2 PF09068.6 g20757.t1 - 0.089 12.8 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 EF hand | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:194947-195303 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~194947-195303 KRTAP PF11759.3 g201.t1 - 0.039 14.1 3.3 0.06 13.6 2.3 1.3 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold7_contigs=9, transcript_loc=scaffold7_contigs=9:33257-33529 Augustus predicted protein sequence Tobacco scaffold7_contigs=9~33257-33529 UBN2_3 PF14244.1 g89875.t1 - 0.0059 16.1 0.1 0.22 11 0 2 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:47174-47907 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~47174-47907 YqcI_YcgG PF08892.6 g60364.t1 - 0.13 11.8 0.5 0.18 11.3 0.3 1.1 1 0 0 1 1 1 0 YqcI/YcgG family | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:112884-113267 Augustus predicted protein sequence Tobacco scaffold1308_contigs=16~112884-113267 DUF977 PF06163.6 g55758.t1 - 0.052 13.2 0.1 0.062 13 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:22614-22937 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~22614-22937 DUF4472 PF14739.1 g5073.t1 - 0.084 13.3 2 0.11 12.9 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:264561-264863 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~264561-264863 NAM-associated PF14303.1 g70578.t1 - 0.0031 17.8 6.2 0.0035 17.6 4.3 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:497104-497412 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~497104-497412 ING PF12998.2 g119134.t1 - 0.0057 16.9 0.4 0.011 16 0.2 1.5 1 0 0 1 1 1 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:997576-998500 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~997576-998500 DUF1092 PF06485.6 g31259.t1 - 0.013 14.4 0.1 0.014 14.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1092) | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:225788-226075 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~225788-226075 Extensin_2 PF04554.8 g126869.t1 - 0.098 12.5 10.1 0.5 10.2 3.1 2.1 2 0 0 2 2 2 0 Extensin-like region | Ref_seq=scaffold2806_contigs=1, transcript_loc=scaffold2806_contigs=1:81750-82115 Augustus predicted protein sequence Tobacco scaffold2806_contigs=1~81750-82115 Ephrin PF00812.12 g82228.t1 - 0.058 12.9 0.1 0.076 12.5 0.1 1.2 1 0 0 1 1 1 0 Ephrin | Ref_seq=scaffold1742_contigs=1, transcript_loc=scaffold1742_contigs=1:8838-9182 Augustus predicted protein sequence Tobacco scaffold1742_contigs=1~8838-9182 RRF PF01765.14 g66940.t1 - 0.0012 18.3 0.2 0.0018 17.7 0 1.3 1 1 0 1 1 1 1 Ribosome recycling factor | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:182366-182701 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~182366-182701 Myb_DNA-bind_3 PF12776.2 g34785.t1 - 0.0042 17.6 1.4 0.0055 17.3 0.4 1.6 1 1 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold860_contigs=4, transcript_loc=scaffold860_contigs=4:68776-70357 Augustus predicted protein sequence Tobacco scaffold860_contigs=4~68776-70357 Ssu72 PF04722.8 g13500.t1 - 0.049 12.9 0.2 0.067 12.5 0.1 1.1 1 0 0 1 1 1 0 Ssu72-like protein | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:177446-178238 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~177446-178238 ATP-synt_8 PF00895.15 g93996.t1 - 1.3 9.3 5.4 15 5.8 3.7 2.2 1 1 0 1 1 1 0 ATP synthase protein 8 | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:372384-372677 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~372384-372677 PGC7_Stella PF15549.1 g10322.t1 - 0.0029 17.5 0.9 0.0072 16.3 0.6 1.6 1 0 0 1 1 1 1 PGC7/Stella/Dppa3 domain | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:80955-84317 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~80955-84317 zf-UBP PF02148.14 g44228.t1 - 0.1 12.7 0.3 0.16 12 0.2 1.3 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:41448-42208 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~41448-42208 Rib_5-P_isom_A PF06026.9 g89065.t1 - 0.06 12.6 0 0.073 12.3 0 1.1 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) | Ref_seq=scaffold1938_contigs=9, transcript_loc=scaffold1938_contigs=9:218871-220504 Augustus predicted protein sequence Tobacco scaffold1938_contigs=9~218871-220504 FH2 PF02181.18 g4949.t1 - 0.013 14.3 0.1 0.015 14.2 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold269_contigs=8, transcript_loc=scaffold269_contigs=8:12833-13069 Augustus predicted protein sequence Tobacco scaffold269_contigs=8~12833-13069 NB-ARC PF00931.17 g88063.t1 - 2.6E-017 62.6 6 3.1E-011 42.6 0.7 2.7 2 0 0 2 2 2 2 NB-ARC domain | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:10757-13165 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~10757-13165 DUF1707 PF08044.6 g115739.t1 - 0.14 11.9 0.1 0.59 9.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:146235-147983 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~146235-147983 Lzipper-MIP1 PF14389.1 g87384.t1 - 0.057 13.5 0.1 0.097 12.7 0 1.3 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:60294-60794 Augustus predicted protein sequence Tobacco scaffold1877_contigs=4~60294-60794 ATHILA PF03078.10 g61110.t1 - 0.00014 20.5 0.1 0.0002 20.1 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:72646-73117 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~72646-73117 Shadoo PF14999.1 g104337.t1 - 3.1 7.6 6.9 0.87 9.4 2.3 1.8 1 1 0 2 2 2 0 Shadow of prion protein, neuroprotective | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:559927-560400 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~559927-560400 zf-CCHC PF00098.18 g26270.t1 - 0.0038 17 1.8 0.0067 16.3 1.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:223420-224642 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~223420-224642 DUF3292 PF11696.3 g7720.t1 - 0.015 13.1 0.1 0.018 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:89643-90728 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~89643-90728 Apo-CIII PF05778.7 g18563.t1 - 0.047 13 0 0.077 12.3 0 1.3 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:232978-234179 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~232978-234179 CAF-1_p150 PF11600.3 g95226.t1 - 0.000014 24.6 27 0.000016 24.4 18.7 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:374185-374767 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~374185-374767 DUF605 PF04652.11 g74894.t1 - 1.3 8.3 8.1 1.8 7.8 5.6 1.3 1 1 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:299548-300120 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~299548-300120 OAD_gamma PF04277.8 g57566.t1 - 0.23 11.8 1.6 1.5 9.2 0 2.7 2 1 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:162763-164487 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~162763-164487 Aminotran_5 PF00266.14 g130125.t1 - 0.0088 14.8 0 0.93 8.1 0 2.2 1 1 1 2 2 2 2 Aminotransferase class-V | Ref_seq=scaffold3506_contigs=1, transcript_loc=scaffold3506_contigs=1:1140-1583 Augustus predicted protein sequence Tobacco scaffold3506_contigs=1~1140-1583 DUF612 PF04747.7 g101991.t1 - 0.045 12.6 12.5 0.061 12.2 8.7 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF612 | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:247729-248649 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~247729-248649 Nop53 PF07767.6 g21209.t1 - 0.37 9.7 3.6 0.14 11.1 0.2 1.7 2 0 0 2 2 2 0 Nop53 (60S ribosomal biogenesis) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:282733-283155 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~282733-283155 ATHILA PF03078.10 g44592.t1 - 0.0019 16.8 0 0.0024 16.5 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:477635-478312 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~477635-478312 Dispanin PF04505.7 g40382.t1 - 0.027 13.9 0 0.052 13 0 1.4 1 0 0 1 1 1 0 Interferon-induced transmembrane protein | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:266321-267642 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~266321-267642 Yip1 PF04893.12 g74834.t1 - 0.048 13.1 0.1 0.052 13 0.1 1.2 1 0 0 1 1 1 0 Yip1 domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:171584-175197 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~171584-175197 Ribosomal_TL5_C PF14693.1 g47118.t1 - 0.066 13.4 0 0.073 13.2 0 1.2 1 0 0 1 1 1 0 Ribosomal protein TL5, C-terminal domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:56614-56850 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~56614-56850 DUF2215 PF10225.4 g3504.t1 - 0.0091 15.4 0.2 0.012 15 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:20541-21266 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~20541-21266 DAP PF15228.1 g80211.t1 - 0.46 11.2 4.7 1.5 9.6 0 2 1 1 1 2 2 2 0 Death-associated protein | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:302020-302444 Augustus predicted protein sequence Tobacco scaffold1710_contigs=11~302020-302444 TFIIF_alpha PF05793.7 g63035.t1 - 4.3 5.5 16.3 4.9 5.4 11.3 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:285400-285822 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~285400-285822 FAM176 PF14851.1 g10363.t1 - 0.02 14.5 0.1 0.022 14.4 0.1 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:196391-196594 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~196391-196594 PAP_fibrillin PF04755.7 g119154.t1 - 0.085 12.5 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 PAP_fibrillin | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:1035069-1035731 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~1035069-1035731 UPF0547 PF10571.4 g10622.t1 - 0.0000014 27.8 1 0.047 13.3 0 2.5 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:5694-6571 Augustus predicted protein sequence Tobacco scaffold389_contigs=8~5694-6571 Phosphoprotein PF00922.12 g64597.t1 - 0.12 11.6 0.1 0.13 11.4 0 1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:75430-75672 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~75430-75672 Trypan_PARP PF05887.6 g61967.t1 - 2.5 7.9 17 3.3 7.5 11.8 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:138674-138901 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~138674-138901 DUF3748 PF12566.3 g21408.t1 - 0.056 13.3 0 0.064 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3748) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:370750-370968 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~370750-370968 Tubulin_2 PF13809.1 g113845.t1 - 0.12 11.3 0 0.13 11.2 0 1.1 1 0 0 1 1 1 0 Tubulin like | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:572322-574109 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~572322-574109 Colicin_C PF12106.3 g101899.t1 - 0.13 11.8 0.6 0.29 10.7 0.4 1.6 1 0 0 1 1 1 0 Colicin C terminal ribonuclease domain | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:34181-34887 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~34181-34887 CCDC155 PF14662.1 g46023.t1 - 0.0018 17.9 7.9 0.0032 17.1 5.5 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:323291-324226 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~323291-324226 MRP-S33 PF08293.6 g82109.t1 - 0.026 14.5 0 0.03 14.2 0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal subunit S27 | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:687145-687560 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~687145-687560 Prp19_bind PF06991.6 g89305.t1 - 2.3 7.4 6.1 3.1 7 4.3 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:262071-262601 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~262071-262601 HSBP1 PF06825.7 g94767.t1 - 0.076 12.6 0.3 0.12 11.9 0.2 1.2 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:93301-93633 Augustus predicted protein sequence Tobacco scaffold2046_contigs=5~93301-93633 Zn_Tnp_IS1595 PF12760.2 g49809.t1 - 0.048 13.4 0.1 0.47 10.3 0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:173751-174266 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~173751-174266 zf-CCHC PF00098.18 g71579.t1 - 0.011 15.6 2 0.02 14.8 1.4 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:65245-65616 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~65245-65616 RNA_capsid PF03035.9 g38017.t1 - 0.037 13.8 0 0.043 13.5 0 1 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:33703-34850 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~33703-34850 DUF3899 PF13038.1 g88288.t1 - 0.008 16.3 0.7 0.012 15.7 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3899) | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:9686-10887 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~9686-10887 DegS PF05384.6 g65722.t1 - 0.18 11 3 0.43 9.7 1.5 1.8 1 1 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:182294-183331 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~182294-183331 DUF4041 PF13250.1 g54338.t1 - 0.021 14.3 0.1 0.042 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4041) | Ref_seq=scaffold1206_contigs=3, transcript_loc=scaffold1206_contigs=3:46697-47062 Augustus predicted protein sequence Tobacco scaffold1206_contigs=3~46697-47062 Meckelin PF09773.4 g109769.t1 - 0.014 13.2 0.2 0.014 13.2 0.1 1.1 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:61943-63173 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~61943-63173 AAA_13 PF13166.1 g68792.t1 - 0.00018 20.1 6.2 0.00023 19.7 4.3 1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:92762-93475 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~92762-93475 DUF1338 PF07063.8 g73019.t1 - 0.051 12.6 0.5 0.056 12.4 0.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:75361-75609 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~75361-75609 Wzy_C PF04932.10 g72137.t1 - 0.1 12.3 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 O-Antigen ligase | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:344873-346674 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~344873-346674 DUF3070 PF11270.3 g15923.t1 - 0.1 12.4 0.9 0.2 11.4 0.2 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:86808-87134 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~86808-87134 Fer4_4 PF12800.2 g7868.t1 - 1.2 9.6 4.8 2.6 8.6 3.3 1.5 1 1 0 1 1 1 0 4Fe-4S binding domain | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:100220-100462 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~100220-100462 HemX PF04375.9 g19021.t1 - 1.1 7.7 10.2 1.3 7.5 7.1 1 1 0 0 1 1 1 0 HemX | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:112354-112596 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~112354-112596 PspA_IM30 PF04012.7 g71782.t1 - 0.0021 17.4 1.7 0.0024 17.2 1.2 1.2 1 0 0 1 1 1 1 PspA/IM30 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:107386-108244 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~107386-108244 MIase PF02426.11 g50234.t1 - 0.03 14.1 0 0.041 13.7 0 1.2 1 0 0 1 1 1 0 Muconolactone delta-isomerase | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:202693-203940 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~202693-203940 AcylCoA_DH_N PF12418.3 g101246.t1 - 0.52 10 2.8 0.82 9.4 0.6 2.3 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase N terminal | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:86425-86739 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~86425-86739 Prefoldin_3 PF13758.1 g4300.t1 - 0.13 12 0.2 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:49467-50702 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~49467-50702 BSP_II PF05432.6 g73915.t1 - 0.014 14.7 2.4 0.017 14.3 1.7 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:190680-191590 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~190680-191590 zf-CCHC PF00098.18 g54045.t1 - 0.0032 17.3 0.3 0.0049 16.7 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:96253-96483 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~96253-96483 FAM177 PF14774.1 g126500.t1 - 0.03 14.2 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 FAM177 family | Ref_seq=scaffold2796_contigs=1, transcript_loc=scaffold2796_contigs=1:79155-82010 Augustus predicted protein sequence Tobacco scaffold2796_contigs=1~79155-82010 DUF2443 PF10398.4 g87324.t1 - 0.11 12.3 1.1 0.82 9.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2443) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:340764-341180 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~340764-341180 TMEM240 PF15207.1 g33158.t1 - 0.55 9.7 2.7 0.59 9.6 1.9 1.2 1 0 0 1 1 1 0 TMEM240 family | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:592852-593091 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~592852-593091 Radical_SAM PF04055.16 g125714.t1 - 0.048 13.8 0 0.052 13.7 0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:115361-116855 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~115361-116855 Na_H_Exchanger PF00999.16 g43381.t1 - 0.013 13.9 0.6 0.017 13.7 0.4 1.3 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:105521-106505 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~105521-106505 LRR_5 PF13306.1 g112718.t1 - 0.078 12.6 0 0.15 11.7 0 1.4 1 0 0 1 1 1 0 Leucine rich repeats (6 copies) | Ref_seq=scaffold2616_contigs=5, transcript_loc=scaffold2616_contigs=5:4223-4798 Augustus predicted protein sequence Tobacco scaffold2616_contigs=5~4223-4798 RVT_3 PF13456.1 g98098.t1 - 0.0034 17.1 0 0.0042 16.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:108900-109130 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~108900-109130 TfoX_C PF04994.8 g94622.t1 - 0.12 12.3 0 0.18 11.7 0 1.3 1 0 0 1 1 1 0 TfoX C-terminal domain | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:185459-185857 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~185459-185857 HAMP PF00672.20 g90083.t1 - 0.13 12.4 0.4 0.16 12.2 0.2 1.2 1 0 0 1 1 1 0 HAMP domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:29261-29551 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~29261-29551 zf-CCHC_4 PF14392.1 g58896.t1 - 0.039 13.6 1.4 0.082 12.5 1 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:154771-156702 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~154771-156702 NPIP PF06409.6 g107155.t1 - 0.074 11.7 0.5 0.083 11.6 0.3 1.1 1 0 0 1 1 1 0 Nuclear pore complex interacting protein (NPIP) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:816325-816549 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~816325-816549 Rax2 PF12768.2 g67503.t1 - 0.091 11.9 0.1 0.1 11.8 0.1 1 1 0 0 1 1 1 0 Cortical protein marker for cell polarity | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:389265-389525 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~389265-389525 YdjC PF04794.7 g96081.t1 - 0.11 11.9 0 0.12 11.7 0 1 1 0 0 1 1 1 0 YdjC-like protein | Ref_seq=scaffold2092_contigs=15, transcript_loc=scaffold2092_contigs=15:22923-23144 Augustus predicted protein sequence Tobacco scaffold2092_contigs=15~22923-23144 FH2 PF02181.18 g70164.t1 - 0.012 14.5 0.1 0.014 14.2 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:357477-357863 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~357477-357863 TMEM240 PF15207.1 g44352.t1 - 0.35 10.4 2.4 0.41 10.2 1.6 1.1 1 0 0 1 1 1 0 TMEM240 family | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:330219-330443 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~330219-330443 T2SK PF03934.8 g2105.t1 - 0.059 12.5 0 1.3 8.1 0 2 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein K | Ref_seq=scaffold201_contigs=2, transcript_loc=scaffold201_contigs=2:9085-9465 Augustus predicted protein sequence Tobacco scaffold201_contigs=2~9085-9465 NdhM PF10664.4 g51635.t1 - 0.079 12.8 0 0.096 12.5 0 1.1 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:362394-362621 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~362394-362621 DUF4611 PF15387.1 g68732.t1 - 0.87 9.7 5.1 2.4 8.3 0.6 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1478_contigs=6, transcript_loc=scaffold1478_contigs=6:75833-76351 Augustus predicted protein sequence Tobacco scaffold1478_contigs=6~75833-76351 CDC45 PF02724.9 g70290.t1 - 1.3 6.9 7.5 1.3 7 5.2 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:234373-235380 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~234373-235380 DBD_Tnp_Mut PF03108.10 g128056.t1 - 0.00000016 30.7 0 0.00000023 30.2 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2847_contigs=1, transcript_loc=scaffold2847_contigs=1:45376-46268 Augustus predicted protein sequence Tobacco scaffold2847_contigs=1~45376-46268 Bystin PF05291.6 g98475.t1 - 0.1 11.5 0 0.13 11.1 0 1.1 1 0 0 1 1 1 0 Bystin | Ref_seq=scaffold2161_contigs=13, transcript_loc=scaffold2161_contigs=13:202254-206425 Augustus predicted protein sequence Tobacco scaffold2161_contigs=13~202254-206425 DUF4226 PF10774.4 g38287.t1 - 0.11 12.5 0.2 0.23 11.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4226) | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:208680-209036 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~208680-209036 CAF-1_p150 PF11600.3 g43893.t1 - 0.006 15.9 30.5 0.0067 15.8 21.1 1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:262272-262637 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~262272-262637 DUF3125 PF11323.3 g109121.t1 - 0.1 12.4 0 0.15 11.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3125) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:42502-45178 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~42502-45178 BAR_2 PF10455.4 g36581.t1 - 0.0056 15.6 0.1 0.007 15.3 0.1 1.1 1 0 0 1 1 1 1 Bin/amphiphysin/Rvs domain for vesicular trafficking | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:40870-41487 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~40870-41487 DUF3320 PF11784.3 g59235.t1 - 0.047 13.2 1.3 5.1 6.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:24786-25223 Augustus predicted protein sequence Tobacco scaffold1285_contigs=4~24786-25223 ATHILA PF03078.10 g42736.t1 - 0.000012 24.1 0 0.000094 21.1 0 1.9 1 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:472958-473776 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~472958-473776 TPR_9 PF13371.1 g112392.t1 - 0.018 14.8 0.1 7.8 6.4 0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:61787-62367 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~61787-62367 DUF2229 PF09989.4 g65976.t1 - 0.041 13.3 0 0.046 13.1 0 1.1 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:62227-62637 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~62227-62637 RXT2_N PF08595.6 g107106.t1 - 0.17 11.6 6.5 0.36 10.6 4.5 1.4 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:657919-659003 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~657919-659003 DUF3797 PF12677.2 g1279.t1 - 0.069 12.7 0.6 8.8 6 0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) | Ref_seq=scaffold158_contigs=1, transcript_loc=scaffold158_contigs=1:3980-4965 Augustus predicted protein sequence Tobacco scaffold158_contigs=1~3980-4965 SR-25 PF10500.4 g104305.t1 - 0.000098 21.9 8.6 0.00012 21.6 6 1.2 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:450715-451778 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~450715-451778 RVT_2 PF07727.9 g74915.t1 - 0.13 11.2 0.4 1.5 7.7 0.3 2 1 1 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:99993-100740 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~99993-100740 Pox_Ag35 PF03286.9 g83365.t1 - 0.049 13.1 5.5 0.051 13 3.8 1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:27245-27559 Augustus predicted protein sequence Tobacco scaffold1791_contigs=14~27245-27559 YdjO PF14169.1 g60426.t1 - 0.019 14.3 0.2 0.035 13.5 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:107098-107739 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~107098-107739 YscO PF07321.7 g80640.t1 - 0.0034 17.2 1 0.0034 17.2 0.7 1.5 2 0 0 2 2 2 1 Type III secretion protein YscO | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:12417-13574 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~12417-13574 Trypan_PARP PF05887.6 g115221.t1 - 0.87 9.4 23.8 0.95 9.2 16.5 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:274087-274697 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~274087-274697 FerA PF08165.6 g49237.t1 - 0.012 15.3 0.2 0.018 14.6 0.2 1.4 1 0 0 1 1 1 0 FerA (NUC095) domain | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:113012-113329 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~113012-113329 CTC1_2 PF15491.1 g34597.t1 - 0.0098 14.9 0.1 0.011 14.7 0.1 1 1 0 0 1 1 1 1 CST, telomere maintenance, complex subunit CTC1 | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:27614-27946 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~27614-27946 DUF3904 PF13044.1 g54890.t1 - 0.089 11.1 0 0.12 10.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3904) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:83473-84086 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~83473-84086 Phage_fiber PF03335.8 g12062.t1 - 8.1 6.5 9 3.3 7.7 0.3 3.5 3 0 0 3 3 3 0 Phage tail fibre repeat | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:335344-335730 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~335344-335730 DUF865 PF05906.6 g1943.t1 - 0.09 12.3 0.2 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:47578-47912 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~47578-47912 CCDC-167 PF15188.1 g125686.t1 - 0.011 15.7 2.7 0.011 15.7 1.9 1.7 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:67339-67955 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~67339-67955 CPSase_L_D3 PF02787.14 g84035.t1 - 0.13 11.9 0.1 0.28 10.9 0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:480916-482484 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~480916-482484 DUF4492 PF14899.1 g48534.t1 - 0.2 11.1 2.5 0.25 10.8 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4492) | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:847198-847437 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~847198-847437 Phage_int_SAM_1 PF02899.12 g97731.t1 - 0.13 12.4 0.2 0.19 11.9 0.1 1.2 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:40503-41233 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~40503-41233 Methyltransf_13 PF08421.6 g56410.t1 - 0.036 13.5 0.1 0.068 12.6 0 1.5 1 1 0 1 1 1 0 Putative zinc binding domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:90640-90882 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~90640-90882 DUF1049 PF06305.6 g88889.t1 - 0.14 11.6 3.6 0.06 12.8 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:27325-27573 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~27325-27573 XLF PF09302.6 g16293.t1 - 0.077 12.7 0 0.077 12.7 0 1.2 1 0 0 1 1 1 0 XLF (XRCC4-like factor) | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:3138-3566 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~3138-3566 TfuA PF07812.7 g25654.t1 - 0.059 12.8 0 0.081 12.3 0 1.1 1 0 0 1 1 1 0 TfuA-like protein | Ref_seq=scaffold702_contigs=3, transcript_loc=scaffold702_contigs=3:45936-46214 Augustus predicted protein sequence Tobacco scaffold702_contigs=3~45936-46214 U-box PF04564.10 g130525.t1 - 0.092 12.7 0 0.13 12.2 0 1.2 1 0 0 1 1 1 0 U-box domain | Ref_seq=scaffold4853_contigs=1, transcript_loc=scaffold4853_contigs=1:130-496 Augustus predicted protein sequence Tobacco scaffold4853_contigs=1~130-496 DUF572 PF04502.8 g83626.t1 - 0.6 9.2 4.8 0.8 8.8 3.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:31524-32135 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~31524-32135 Ribosomal_L28 PF00830.14 g87312.t1 - 0.007 16.1 0.1 0.012 15.4 0 1.3 1 0 0 1 1 1 1 Ribosomal L28 family | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:291359-291991 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~291359-291991 Oest_recep PF02159.10 g5043.t1 - 0.034 14.2 1.4 0.041 14 1 1.1 1 0 0 1 1 1 0 Oestrogen receptor | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:203804-204109 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~203804-204109 zf-CCHC PF00098.18 g26417.t1 - 0.086 12.8 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:28082-30343 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~28082-30343 Remorin_C PF03763.8 g82676.t1 - 0.039 13.4 2.6 0.069 12.6 1.8 1.3 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold1760_contigs=2, transcript_loc=scaffold1760_contigs=2:38235-39020 Augustus predicted protein sequence Tobacco scaffold1760_contigs=2~38235-39020 DUF1682 PF07946.9 g59848.t1 - 0.92 8.2 9.3 1.3 7.8 6.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:12785-13754 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~12785-13754 HECA PF15353.1 g73993.t1 - 0.053 13.2 0.2 0.11 12.2 0.2 1.4 1 1 0 1 1 1 0 Headcase protein family homologue | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:351797-352138 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~351797-352138 zf-CCHC PF00098.18 g80885.t1 - 0.00084 19.1 2 0.0012 18.6 1.4 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:245770-246120 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~245770-246120 DUF4611 PF15387.1 g118352.t1 - 0.0062 16.6 0 0.0076 16.3 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4611) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:518291-518626 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~518291-518626 Muted PF14942.1 g8623.t1 - 0.081 12.7 5.7 0.084 12.7 3.9 1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:418795-419495 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~418795-419495 AFT PF08731.6 g61704.t1 - 0.046 13.8 0.9 0.078 13.1 0.6 1.4 1 1 0 1 1 1 0 Transcription factor AFT | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:86105-87183 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~86105-87183 Sas10_Utp3 PF04000.10 g26457.t1 - 0.05 13.7 5.4 0.25 11.5 0.1 2.6 2 0 0 2 2 2 0 Sas10/Utp3/C1D family | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:101940-102746 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~101940-102746 DUF4611 PF15387.1 g33066.t1 - 0.14 12.3 2.4 0.27 11.3 1.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:276981-278361 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~276981-278361 YpzI PF14140.1 g11409.t1 - 0.036 13.5 0.1 0.15 11.5 0 2 1 1 1 2 2 2 0 YpzI-like protein | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:212310-212537 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~212310-212537 PAT1 PF09770.4 g21025.t1 - 3.8 5.6 14.2 4 5.5 9.9 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:282762-283160 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~282762-283160 CM_1 PF07736.6 g1025.t1 - 0.14 12.2 0 0.19 11.8 0 1.2 1 0 0 1 1 1 0 Chorismate mutase type I | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:103729-104055 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~103729-104055 Spore-coat_CotD PF11122.3 g62204.t1 - 0.044 14 1.4 0.098 12.9 1 1.5 1 0 0 1 1 1 0 Inner spore coat protein D | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:181728-182450 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~181728-182450 zf-CCHC PF00098.18 g6586.t1 - 0.003 17.4 0.1 0.0056 16.5 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:96996-97715 Augustus predicted protein sequence Tobacco scaffold300_contigs=5~96996-97715 CaMBD PF02888.11 g36273.t1 - 0.021 14.5 3.4 0.039 13.7 1.9 1.7 1 1 0 1 1 1 0 Calmodulin binding domain | Ref_seq=scaffold881_contigs=4, transcript_loc=scaffold881_contigs=4:29626-29892 Augustus predicted protein sequence Tobacco scaffold881_contigs=4~29626-29892 DBD_Tnp_Mut PF03108.10 g41948.t1 - 0.021 14.3 0.1 0.052 13.1 0.1 1.6 2 0 0 2 2 2 0 MuDR family transposase | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:301199-302250 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~301199-302250 Adenylsucc_synt PF00709.16 g91410.t1 - 0.048 12.3 0 0.054 12.1 0 1 1 0 0 1 1 1 0 Adenylosuccinate synthetase | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:120942-121199 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~120942-121199 Abhydro_lipase PF04083.11 g42101.t1 - 0.044 13.1 0 0.062 12.6 0 1.4 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:9151-9543 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~9151-9543 DUF2454 PF10521.4 g16095.t1 - 0.18 10.8 0 0.22 10.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2454) | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:303165-304206 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~303165-304206 EF-hand_9 PF14658.1 g102780.t1 - 0.036 13.9 0 0.053 13.4 0 1.2 1 0 0 1 1 1 0 EF-hand domain | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:14992-15375 Augustus predicted protein sequence Tobacco scaffold2268_contigs=6~14992-15375 UCR_6-4kD PF08997.5 g52837.t1 - 1.4 8.6 4.8 4.2 7.1 2.8 2.1 1 1 1 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein | Ref_seq=scaffold1182_contigs=8, transcript_loc=scaffold1182_contigs=8:5489-5788 Augustus predicted protein sequence Tobacco scaffold1182_contigs=8~5489-5788 DUF3844 PF12955.2 g22539.t1 - 0.17 12 1 0.21 11.7 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3844) | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:37134-37917 Augustus predicted protein sequence Tobacco scaffold623_contigs=13~37134-37917 SpoIIIAH PF12685.2 g25690.t1 - 0.14 11.6 0.8 0.16 11.4 0.5 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:70475-70864 Augustus predicted protein sequence Tobacco scaffold703_contigs=10~70475-70864 EpsG PF14897.1 g52829.t1 - 0.013 14.4 1.3 0.013 14.4 0.9 1 1 0 0 1 1 1 0 EpsG family | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1189240-1189503 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1189240-1189503 MarR_2 PF12802.2 g63335.t1 - 0.056 13.1 0 0.12 12 0 1.5 2 0 0 2 2 2 0 MarR family | Ref_seq=scaffold1372_contigs=4, transcript_loc=scaffold1372_contigs=4:20856-21068 Augustus predicted protein sequence Tobacco scaffold1372_contigs=4~20856-21068 FbpA PF05833.6 g28329.t1 - 0.026 13 0 0.027 13 0 1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:76450-76878 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~76450-76878 Toxin_34 PF08396.5 g93097.t1 - 0.72 10.4 5.8 1 9.9 4 1.3 1 0 0 1 1 1 0 Spider toxin omega agatoxin/Tx1 family | Ref_seq=scaffold2006_contigs=6, transcript_loc=scaffold2006_contigs=6:39109-43321 Augustus predicted protein sequence Tobacco scaffold2006_contigs=6~39109-43321 ARL6IP6 PF15062.1 g123697.t1 - 0.053 13.4 0.3 0.27 11.1 0.1 2 2 0 0 2 2 2 0 Haemopoietic lineage transmembrane helix | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:323017-323557 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~323017-323557 YopD PF05844.7 g127985.t1 - 0.0099 14.9 0.1 0.011 14.7 0 1 1 0 0 1 1 1 1 YopD protein | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:7591-7836 Augustus predicted protein sequence Tobacco scaffold2845_contigs=1~7591-7836 Sigma54_DBD PF04552.8 g98529.t1 - 0.031 13.7 0.2 0.039 13.4 0.2 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:72951-73265 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~72951-73265 DUF3152 PF11350.3 g20404.t1 - 0.005 16.3 0 0.0062 16 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3152) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:220356-220895 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~220356-220895 RVT_3 PF13456.1 g31584.t1 - 0.06 13.1 0 0.22 11.3 0 2 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:188849-192680 Augustus predicted protein sequence Tobacco scaffold797_contigs=11~188849-192680 FH2 PF02181.18 g123926.t1 - 0.0064 15.4 0.1 0.0078 15.1 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:911054-911500 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~911054-911500 Sugarporin_N PF11471.3 g14015.t1 - 0.023 14.3 0.3 0.037 13.6 0.2 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold460_contigs=8, transcript_loc=scaffold460_contigs=8:11971-12234 Augustus predicted protein sequence Tobacco scaffold460_contigs=8~11971-12234 DUF2743 PF10899.3 g69833.t1 - 0.088 12.1 0.1 0.093 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:281336-282346 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~281336-282346 LZ_Tnp_IS481 PF13011.1 g69654.t1 - 0.26 11.6 0.9 11 6.5 0 2.2 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:788146-789449 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~788146-789449 DUF1476 PF07345.6 g3161.t1 - 0.024 14.8 0.3 0.024 14.8 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1476) | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:103982-105777 Augustus predicted protein sequence Tobacco scaffold227_contigs=2~103982-105777 CrtC PF07143.6 g121860.t1 - 0.1 11.8 0.1 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Hydroxyneurosporene synthase (CrtC) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:575163-576197 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~575163-576197 A2M PF00207.17 g99232.t1 - 0.086 12.4 0.1 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:90726-91094 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~90726-91094 zf-RING_UBOX PF13445.1 g112373.t1 - 0.06 13 0.1 0.15 11.7 0 1.7 2 0 0 2 2 2 0 RING-type zinc-finger | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:26582-27585 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~26582-27585 HALZ PF02183.13 g37830.t1 - 0.000079 22.2 3.2 0.21 11.3 0 2.4 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:90076-90540 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~90076-90540 RVT_3 PF13456.1 g62822.t1 - 0.0026 17.5 0 0.0035 17 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:447560-447853 Augustus predicted protein sequence Tobacco scaffold1357_contigs=25~447560-447853 EBV-NA3 PF05009.7 g46511.t1 - 0.0051 16 1.2 0.0051 16 0.8 1 1 0 0 1 1 1 1 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1070_contigs=2, transcript_loc=scaffold1070_contigs=2:100851-101054 Augustus predicted protein sequence Tobacco scaffold1070_contigs=2~100851-101054 DUF4423 PF14394.1 g71098.t1 - 0.052 13 0 0.084 12.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:31124-32394 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~31124-32394 DUF3918 PF13056.1 g115651.t1 - 0.0058 15.9 0 0.011 14.9 0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3918) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:885125-885409 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~885125-885409 RCR PF12273.3 g45080.t1 - 0.054 14 0.9 0.06 13.9 0.6 1.1 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:362114-362437 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~362114-362437 Seryl_tRNA_N PF02403.17 g58021.t1 - 0.05 13.6 7.2 0.072 13.1 5 1.3 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:147044-147623 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~147044-147623 Tropomyosin PF00261.15 g39496.t1 - 0.035 13.1 0 0.039 13 0 1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:68925-69245 Augustus predicted protein sequence Tobacco scaffold957_contigs=5~68925-69245 BOF PF04076.8 g81675.t1 - 0.019 14.7 0 0.024 14.4 0 1.1 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:259796-260098 Augustus predicted protein sequence Tobacco scaffold1732_contigs=8~259796-260098 RnaseA PF00074.15 g60571.t1 - 0.12 12.6 0 0.16 12.2 0 1.1 1 0 0 1 1 1 0 Pancreatic ribonuclease | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:607610-607864 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~607610-607864 VGCC_beta4Aa_N PF12052.3 g82645.t1 - 0.0012 18.6 0.4 0.0017 18.1 0.3 1.3 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:79257-79697 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~79257-79697 DUF2238 PF09997.4 g72162.t1 - 0.14 11.5 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:404885-405246 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~404885-405246 DUF4219 PF13961.1 g30532.t1 - 0.00063 19 0 0.00098 18.4 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1118901-1119143 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1118901-1119143 DUF904 PF06005.7 g78074.t1 - 0.019 15.2 0.5 0.025 14.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:353306-354527 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~353306-354527 DUF2182 PF09948.4 g20674.t1 - 0.18 11.7 0.6 0.26 11.1 0.4 1.2 1 0 0 1 1 1 0 Predicted metal-binding integral membrane protein (DUF2182) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:42962-43321 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~42962-43321 DUF4083 PF13314.1 g89308.t1 - 0.044 13.6 3.8 0.092 12.5 2.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:267816-270286 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~267816-270286 LytR_C PF13399.1 g113201.t1 - 0.026 14.8 0 0.031 14.6 0 1.1 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:17148-17706 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~17148-17706 Dsh_C PF12316.3 g17541.t1 - 0.027 14.6 2.3 0.031 14.3 1.6 1.1 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:94795-95001 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~94795-95001 DUF1347 PF07079.6 g36857.t1 - 0.06 11.5 0 0.077 11.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold902_contigs=1, transcript_loc=scaffold902_contigs=1:28626-29237 Augustus predicted protein sequence Tobacco scaffold902_contigs=1~28626-29237 IBV_3A PF03617.8 g65341.t1 - 0.033 13.9 1.2 0.054 13.2 0.8 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:63412-63999 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~63412-63999 IFP_35_N PF07334.8 g21199.t1 - 0.075 13 0.1 0.1 12.5 0.1 1.2 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:256945-257211 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~256945-257211 CDC45 PF02724.9 g50982.t1 - 0.016 13.2 16.3 0.017 13.2 11.3 1.2 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:136774-137289 Augustus predicted protein sequence Tobacco scaffold1148_contigs=4~136774-137289 Syntaxin-6_N PF09177.6 g26753.t1 - 0.0071 16.7 0.1 0.0093 16.3 0.1 1.2 1 0 0 1 1 1 1 Syntaxin 6, N-terminal | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:261329-261703 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~261329-261703 Herpes_pp38 PF04846.8 g118203.t1 - 0.025 13.8 0.1 0.04 13.2 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus pp38 phosphoprotein | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:61233-61637 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~61233-61637 HTH_29 PF13551.1 g3448.t1 - 0.012 15.7 0.1 0.014 15.5 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn helix | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:80571-80899 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~80571-80899 Phage_endo_I PF05367.6 g57373.t1 - 0.05 12.9 0 0.069 12.5 0 1.2 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:50463-51533 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~50463-51533 DUF1891 PF09004.5 g83538.t1 - 0.0031 16.8 0 2.6 7.5 0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1891) | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:50436-51120 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~50436-51120 DUF3487 PF11990.3 g112457.t1 - 0.012 14.9 0.8 3.3 7.1 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:77012-78821 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~77012-78821 DUF3851 PF12962.2 g99133.t1 - 0.071 13.1 0 0.1 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3851) | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:96128-96406 Augustus predicted protein sequence Tobacco scaffold2170_contigs=8~96128-96406 CDV3 PF15359.1 g26976.t1 - 0.026 14.6 0.4 0.036 14.1 0.2 1.2 1 0 0 1 1 1 0 Carnitine deficiency-associated protein 3 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:630670-631207 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~630670-631207 Nuc_recep-AF1 PF11825.3 g109264.t1 - 0.14 12.1 0.1 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold2492_contigs=9, transcript_loc=scaffold2492_contigs=9:1874-2146 Augustus predicted protein sequence Tobacco scaffold2492_contigs=9~1874-2146 Presenilin PF01080.12 g7054.t1 - 0.058 12.2 0.2 0.068 11.9 0.2 1.1 1 0 0 1 1 1 0 Presenilin | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:107999-110443 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~107999-110443 SURF6 PF04935.7 g4438.t1 - 0.048 12.9 1.9 0.054 12.7 1.3 1 1 0 0 1 1 1 0 Surfeit locus protein 6 | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:228422-228709 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~228422-228709 DUF2713 PF10897.3 g2483.t1 - 0.029 13.6 0 0.038 13.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2713) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:106224-108255 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~106224-108255 Tom37_C PF11801.3 g16249.t1 - 0.0059 16.4 2.3 0.0067 16.3 1.6 1.1 1 0 0 1 1 1 1 Tom37 C-terminal domain | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:186729-187088 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~186729-187088 Vir_act_alpha_C PF10400.4 g89168.t1 - 0.015 15.6 0.1 0.019 15.3 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1941_contigs=2, transcript_loc=scaffold1941_contigs=2:13517-13831 Augustus predicted protein sequence Tobacco scaffold1941_contigs=2~13517-13831 DUF2368 PF10166.4 g69577.t1 - 0.076 12.6 0.1 0.083 12.5 0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:468886-469533 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~468886-469533 mRNA_cap_enzyme PF01331.14 g62985.t1 - 0.093 12.4 0.4 0.1 12.2 0.3 1.1 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:151557-151841 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~151557-151841 DUF2706 PF10913.3 g65561.t1 - 0.1 12.2 0.1 0.21 11.1 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2706) | Ref_seq=scaffold1419_contigs=9, transcript_loc=scaffold1419_contigs=9:150136-150591 Augustus predicted protein sequence Tobacco scaffold1419_contigs=9~150136-150591 Aldose_epim PF01263.15 g26289.t1 - 0.11 11.6 0.1 0.13 11.3 0 1.2 1 1 0 1 1 1 0 Aldose 1-epimerase | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:322712-323351 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~322712-323351 Cdd1 PF11731.3 g84291.t1 - 0.12 12.3 0 0.15 12 0 1.1 1 0 0 1 1 1 0 Pathogenicity locus | Ref_seq=scaffold1817_contigs=8, transcript_loc=scaffold1817_contigs=8:196775-197026 Augustus predicted protein sequence Tobacco scaffold1817_contigs=8~196775-197026 IL22 PF14565.1 g130249.t1 - 0.031 14.3 0 0.041 13.9 0 1.2 1 0 0 1 1 1 0 Interleukin 22 IL-10-related T-cell-derived-inducible factor | Ref_seq=scaffold3761_contigs=1, transcript_loc=scaffold3761_contigs=1:1-1306 Augustus predicted protein sequence Tobacco scaffold3761_contigs=1~1-1306 DUF605 PF04652.11 g19142.t1 - 0.22 10.8 9.4 0.25 10.7 6.5 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:413910-415181 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~413910-415181 DUF2277 PF10041.4 g129977.t1 - 0.035 14 0.8 0.063 13.2 0.4 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) | Ref_seq=scaffold3287_contigs=1, transcript_loc=scaffold3287_contigs=1:1731-2182 Augustus predicted protein sequence Tobacco scaffold3287_contigs=1~1731-2182 HALZ PF02183.13 g86689.t1 - 0.0043 16.7 0.3 0.007 16 0.2 1.4 1 0 0 1 1 1 1 Homeobox associated leucine zipper | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:202027-202332 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~202027-202332 Phage_HK97_TLTM PF06120.6 g47380.t1 - 0.038 13.3 0 0.044 13.1 0 1.1 1 0 0 1 1 1 0 Tail length tape measure protein | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:32009-32311 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~32009-32311 GHMP_kinases_N PF00288.21 g80496.t1 - 0.015 15.3 0 0.017 15.1 0 1.2 1 0 0 1 1 1 0 GHMP kinases N terminal domain | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:149640-150121 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~149640-150121 Leucyl-specific PF14795.1 g1298.t1 - 0.14 12 0.6 13 5.7 0.1 2.3 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold167_contigs=1, transcript_loc=scaffold167_contigs=1:1-770 Augustus predicted protein sequence Tobacco scaffold167_contigs=1~1-770 DUF688 PF05097.7 g12432.t1 - 0.077 11.9 2.1 0.082 11.8 1.5 1 1 0 0 1 1 1 0 Protein of unknown function (DUF688) | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:41715-41942 Augustus predicted protein sequence Tobacco scaffold427_contigs=11~41715-41942 DUF3326 PF11805.3 g18089.t1 - 0.074 11.7 0 0.077 11.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) | Ref_seq=scaffold544_contigs=3, transcript_loc=scaffold544_contigs=3:10296-10499 Augustus predicted protein sequence Tobacco scaffold544_contigs=3~10296-10499 Pentapeptide_4 PF13599.1 g27761.t1 - 0.069 12.9 0 0.095 12.5 0 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:250570-251688 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~250570-251688 Auxin_repressed PF05564.7 g55889.t1 - 0.061 13.9 0.3 12 6.5 0 2.2 1 1 1 2 2 2 0 Dormancy/auxin associated protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:33976-34473 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~33976-34473 SLR1-BP PF07333.7 g31222.t1 - 0.033 14.4 9.8 0.05 13.8 6.8 1.4 1 0 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:82527-82918 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~82527-82918 DUF3296 PF11726.3 g81011.t1 - 0.09 12.3 0.3 0.094 12.2 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3296) | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:22351-22700 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~22351-22700 ICAT PF06384.6 g98970.t1 - 0.017 14.8 0.1 0.02 14.6 0.1 1.1 1 0 0 1 1 1 0 Beta-catenin-interacting protein ICAT | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:122793-122993 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~122793-122993 MoaE PF02391.12 g81260.t1 - 0.12 12.2 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 MoaE protein | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:18467-18796 Augustus predicted protein sequence Tobacco scaffold1728_contigs=6~18467-18796 DUF3122 PF11320.3 g102356.t1 - 0.0051 16.7 0.3 0.11 12.3 0 2 2 0 0 2 2 2 1 Protein of unknown function (DUF3122) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:20791-21399 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~20791-21399 DBD_Tnp_Mut PF03108.10 g45130.t1 - 0.0000002 30.4 0.1 0.00000032 29.8 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:493363-493776 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~493363-493776 Dak2 PF02734.12 g112967.t1 - 0.042 13.5 0 0.056 13.1 0 1.2 1 0 0 1 1 1 0 DAK2 domain | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:32590-32952 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~32590-32952 DUF4413 PF14372.1 g72104.t1 - 0.0000052 26.3 0.4 0.000026 24.1 0.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:284272-284667 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~284272-284667 WRC PF08879.5 g33010.t1 - 0.13 11.9 1.2 0.27 10.9 0.9 1.4 1 0 0 1 1 1 0 WRC | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:166364-170000 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~166364-170000 CCT_2 PF09425.5 g109904.t1 - 0.0000025 26.9 4.2 0.0000053 25.8 2.9 1.6 1 0 0 1 1 1 1 Divergent CCT motif | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:466923-468403 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~466923-468403 Sfi1_C PF10638.4 g77268.t1 - 0.076 13.4 0.1 0.12 12.7 0 1.2 1 0 0 1 1 1 0 Spindle body associated protein C-terminus | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:211870-213087 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~211870-213087 DltD_M PF04918.7 g57139.t1 - 0.0061 16.7 3 0.0078 16.4 2 1.1 1 0 0 1 1 1 1 DltD central region | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:561295-562081 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~561295-562081 BORG_CEP PF14957.1 g28747.t1 - 0.19 12.6 1.4 2.3 9.1 0 2.1 1 1 1 2 2 2 0 Cdc42 effector | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:176783-177184 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~176783-177184 Toxin_24 PF08094.6 g117928.t1 - 2.6 7.7 19.6 2.3 7.8 0.8 4.2 3 1 1 4 4 4 0 Conotoxin TVIIA/GS family | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:15270-15734 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~15270-15734 DMPK_coil PF08826.5 g63985.t1 - 0.28 11 3.5 0.41 10.5 0.4 2 1 1 1 2 2 2 0 DMPK coiled coil domain like | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:58909-59310 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~58909-59310 ATHILA PF03078.10 g121113.t1 - 0.0011 17.6 0 1.8 7 0 2.9 2 1 1 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:400860-401527 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~400860-401527 Herpes_BLLF1 PF05109.8 g85068.t1 - 0.33 8.8 4.5 0.38 8.6 3.1 1 1 0 0 1 1 1 0 Herpes virus major outer envelope glycoprotein (BLLF1) | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:141316-141669 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~141316-141669 RVT_3 PF13456.1 g111575.t1 - 0.000066 22.6 0 0.000097 22 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:1105194-1105545 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~1105194-1105545 DUF2996 PF11210.3 g115119.t1 - 0.11 12.8 0.1 0.15 12.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2996) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:42908-43926 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~42908-43926 DZR PF12773.2 g15431.t1 - 0.052 13.3 0.6 0.077 12.8 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:319455-319772 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~319455-319772 YihI PF04220.7 g8105.t1 - 0.11 11.7 0 0.2 10.9 0 1.3 1 0 0 1 1 1 0 Der GTPase activator (YihI) | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:40855-41384 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~40855-41384 DUF4201 PF13870.1 g49471.t1 - 0.0015 17.9 3.7 0.002 17.6 2.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:608687-608986 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~608687-608986 PAS PF00989.19 g3750.t1 - 0.085 12.6 0.1 0.096 12.4 0.1 1.1 1 0 0 1 1 1 0 PAS fold | Ref_seq=scaffold240_contigs=3, transcript_loc=scaffold240_contigs=3:33907-34238 Augustus predicted protein sequence Tobacco scaffold240_contigs=3~33907-34238 DUF2215 PF10225.4 g42527.t1 - 0.0087 15.5 3 0.013 14.9 2.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:60431-61563 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~60431-61563 DUF3104 PF11302.3 g51704.t1 - 0.18 11.2 0.1 24 4.4 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3104) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:21101-21926 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~21101-21926 HEV_ORF1 PF02444.11 g88551.t1 - 0.083 13 0.2 0.089 12.9 0.1 1.1 1 0 0 1 1 1 0 Hepatitis E virus ORF-2 (Putative capsid protein) | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:20998-21243 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~20998-21243 DUF826 PF05696.6 g2168.t1 - 0.0076 16.3 0.1 0.01 15.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF826) | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:119384-119698 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~119384-119698 DUF2505 PF10698.4 g126166.t1 - 0.13 11.7 0 0.76 9.2 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2505) | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:105574-107073 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~105574-107073 Mlo PF03094.10 g126926.t1 - 0.13 10.3 0.3 0.23 9.5 0.2 1.4 1 0 0 1 1 1 0 Mlo family | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:690-1244 Augustus predicted protein sequence Tobacco scaffold2809_contigs=1~690-1244 DUF4187 PF13821.1 g51063.t1 - 0.32 10.6 2.2 0.5 9.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4187) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:4327-4671 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~4327-4671 NADH5_C PF06455.6 g111176.t1 - 0.0058 16 0 0.61 9.4 0 2.4 2 0 0 2 2 2 2 NADH dehydrogenase subunit 5 C-terminus | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:19573-21497 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~19573-21497 LURAP PF14854.1 g117700.t1 - 0.037 13.7 0.4 0.48 10.1 0.3 2.3 1 1 0 1 1 1 0 Leucine rich adaptor protein | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:51813-53472 Augustus predicted protein sequence Tobacco scaffold2693_contigs=8~51813-53472 RVT_3 PF13456.1 g11581.t1 - 0.089 12.5 0 0.14 11.9 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold409_contigs=16, transcript_loc=scaffold409_contigs=16:164739-165235 Augustus predicted protein sequence Tobacco scaffold409_contigs=16~164739-165235 FAP PF07174.6 g101924.t1 - 2.9 7.1 10.2 3.1 7 7.1 1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:86906-87208 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~86906-87208 DUF3122 PF11320.3 g40665.t1 - 0.11 12.3 0 0.14 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:239802-240164 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~239802-240164 DUF4216 PF13952.1 g787.t1 - 0.00013 21.3 0 0.00019 20.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4216) | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:44527-45688 Augustus predicted protein sequence Tobacco scaffold52_contigs=2~44527-45688 DBD_Tnp_Mut PF03108.10 g4772.t1 - 1.3E-010 40.6 0 2.1E-010 40 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold263_contigs=4, transcript_loc=scaffold263_contigs=4:128183-129249 Augustus predicted protein sequence Tobacco scaffold263_contigs=4~128183-129249 Sec16 PF12932.2 g51154.t1 - 0.12 12.3 0.1 0.13 12.2 0 1.2 1 0 0 1 1 1 0 Vesicle coat trafficking protein Sec16 mid-region | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:72182-72475 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~72182-72475 DegS PF05384.6 g24253.t1 - 0.015 14.4 1.4 0.02 14.1 0.9 1.1 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:335409-335702 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~335409-335702 HTH_5 PF01022.15 g96027.t1 - 0.2 11.3 0.9 0.64 9.7 0.2 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:53843-54100 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~53843-54100 DUF1719 PF08224.6 g43919.t1 - 0.052 12.6 0.7 0.053 12.5 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:352091-352321 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~352091-352321 DUF2015 PF09435.5 g15825.t1 - 0.14 11.9 0.1 0.21 11.3 0 1.2 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:384588-385241 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~384588-385241 DUF2317 PF10079.4 g60439.t1 - 0.000058 21.9 9 0.00006 21.8 6.2 1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2317) | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:24065-24912 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~24065-24912 zf-U11-48K PF05253.7 g83359.t1 - 0.033 13.9 1 0.085 12.5 0.7 1.7 1 0 0 1 1 1 0 U11-48K-like CHHC zinc finger | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:1437-2280 Augustus predicted protein sequence Tobacco scaffold1791_contigs=14~1437-2280 Mtr2 PF10429.4 g68275.t1 - 0.09 12.5 0.1 0.1 12.3 0.1 1.1 1 0 0 1 1 1 0 Nuclear pore RNA shuttling protein Mtr2 | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:86947-87234 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~86947-87234 Vac_Fusion PF02346.11 g119288.t1 - 3.2 7.2 8.2 12 5.4 0.7 2.3 2 0 0 2 2 2 0 Chordopoxvirus fusion protein | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:281920-282561 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~281920-282561 Rpr2 PF04032.11 g73849.t1 - 0.023 14.5 0 0.032 14.1 0 1.3 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:42271-44873 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~42271-44873 DUF4496 PF14908.1 g87494.t1 - 0.12 12.2 0 6.1 6.7 0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4496) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:239692-240478 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~239692-240478 GP38 PF05268.6 g48322.t1 - 0.084 12.2 4.1 3 7.2 2.1 2 1 1 1 2 2 2 0 Phage tail fibre adhesin Gp38 | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:376613-376900 Augustus predicted protein sequence Tobacco scaffold1107_contigs=16~376613-376900 OKR_DC_1_C PF03711.10 g111332.t1 - 0.11 12.5 0 0.15 12.1 0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, C-terminal domain | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:142497-144010 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~142497-144010 Chromo PF00385.19 g100656.t1 - 0.0035 16.9 0.1 0.0044 16.6 0.1 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:184723-184986 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~184723-184986 Retrotrans_gag PF03732.12 g95648.t1 - 0.1 12.7 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:13782-14823 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~13782-14823 FAM176 PF14851.1 g123156.t1 - 0.016 14.8 1.1 0.019 14.6 0.8 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:86220-86519 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~86220-86519 Transposase_28 PF04195.7 g63247.t1 - 0.1 11.8 0.5 0.14 11.4 0.4 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:24689-25081 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~24689-25081 Nop16 PF09420.5 g68530.t1 - 0.032 14.3 3.8 0.033 14.2 2.6 1.1 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:334291-334545 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~334291-334545 IBV_3A PF03617.8 g50539.t1 - 0.04 13.6 0.2 0.076 12.7 0.2 1.4 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:262062-263289 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~262062-263289 DUF4219 PF13961.1 g11796.t1 - 0.0017 17.6 0 0.0031 16.8 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:266741-268052 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~266741-268052 gag-asp_proteas PF13975.1 g46752.t1 - 0.074 12.8 0.1 0.62 9.9 0 2 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:77781-78418 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~77781-78418 Dynamin_M PF01031.15 g104835.t1 - 0.065 11.9 0 0.074 11.8 0 1 1 0 0 1 1 1 0 Dynamin central region | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:120587-121647 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~120587-121647 DUF4028 PF13220.1 g103228.t1 - 0.1 12.2 0.1 0.18 11.4 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4028) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:170631-170834 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~170631-170834 IMCp PF12314.3 g91425.t1 - 0.013 15.5 0.2 5.3 7.2 0 2.1 1 1 1 2 2 2 0 Inner membrane complex protein | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:145695-146210 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~145695-146210 DUF488 PF04343.8 g95613.t1 - 0.032 14.6 0.1 11 6.4 0 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF488 | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:140336-141319 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~140336-141319 DUF520 PF04461.8 g68791.t1 - 0.063 13.1 0.3 0.08 12.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF520) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:92042-92692 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~92042-92692 Apidaecin PF00807.12 g28557.t1 - 0.9 9.2 7.3 0.16 11.6 2.2 2 2 0 0 2 2 2 0 Apidaecin | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:186050-186349 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~186050-186349 Viral_coat PF00729.13 g15374.t1 - 0.14 11.4 0.1 0.15 11.3 0.1 1.1 1 0 0 1 1 1 0 Viral coat protein (S domain) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:144381-145307 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~144381-145307 IF2_assoc PF08364.6 g67118.t1 - 2.3 8.2 10.1 4.8 7.2 0.3 3.8 3 2 0 3 3 3 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:547075-547506 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~547075-547506 ZipA_C PF04354.8 g34707.t1 - 0.021 14.3 0.1 4.5 6.7 0 2.7 1 1 2 3 3 3 0 ZipA, C-terminal FtsZ-binding domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:122676-123079 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~122676-123079 DUF2309 PF10070.4 g92712.t1 - 0.033 12.3 2.6 0.039 12 1.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:348574-348972 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~348574-348972 zf-CCHC PF00098.18 g86548.t1 - 0.00021 21 0.4 0.00021 21 0.3 2.4 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:47030-47338 Augustus predicted protein sequence Tobacco scaffold1851_contigs=29~47030-47338 IBV_3A PF03617.8 g45490.t1 - 0.059 13.1 0.4 0.096 12.4 0.2 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:12394-13038 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~12394-13038 KaiC PF06745.8 g27377.t1 - 0.021 13.9 0.8 0.025 13.6 0.6 1.3 1 0 0 1 1 1 0 KaiC | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:111958-112281 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~111958-112281 Cortex-I_coil PF09304.5 g112433.t1 - 0.0034 17.3 4.6 0.013 15.5 1.7 2.3 1 1 1 2 2 2 2 Cortexillin I, coiled coil | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:29257-30780 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~29257-30780 DUF2694 PF10904.3 g48037.t1 - 0.097 12.6 1.2 0.16 11.9 0 2 3 0 0 3 3 3 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:12357-12962 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~12357-12962 Transposase_28 PF04195.7 g62426.t1 - 0.00046 19.5 0.3 0.00079 18.7 0.1 1.5 1 1 1 2 2 2 1 Putative gypsy type transposon | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:205918-206304 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~205918-206304 YdjO PF14169.1 g63424.t1 - 0.18 11.3 0.5 0.29 10.6 0.3 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:246040-246887 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~246040-246887 DUF3293 PF11697.3 g103286.t1 - 0.018 15.1 0.5 0.038 14.1 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3293) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:290324-290554 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~290324-290554 P12 PF12669.2 g33660.t1 - 0.15 12.2 7.2 0.19 11.9 5 1.2 1 0 0 1 1 1 0 Virus attachment protein p12 family | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:316737-317207 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~316737-317207 MAD PF05557.8 g1036.t1 - 0.011 13.9 0.9 0.012 13.7 0.6 1 1 0 0 1 1 1 0 Mitotic checkpoint protein | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:136449-136844 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~136449-136844 Toxin_55 PF15606.1 g94623.t1 - 0.23 11.4 0 0.23 11.4 0 1.5 2 0 0 2 2 2 0 Putative toxin 55 | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:186592-186969 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~186592-186969 CDC45 PF02724.9 g53572.t1 - 2.9 5.7 6.9 3 5.7 4.8 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:119314-119679 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~119314-119679 zf-C4_ClpX PF06689.8 g15267.t1 - 0.018 14.5 0.2 0.029 13.8 0.1 1.4 1 0 0 1 1 1 0 ClpX C4-type zinc finger | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:25056-25472 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~25056-25472 CT47 PF15623.1 g91436.t1 - 0.00092 19 1.8 0.0012 18.7 1.3 1.1 1 0 0 1 1 1 1 Cancer/testis gene family 47 | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:159887-160830 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~159887-160830 FTZ PF03867.9 g109449.t1 - 0.033 13.4 0 0.038 13.2 0 1.1 1 0 0 1 1 1 0 Fushi tarazu (FTZ), N-terminal region | Ref_seq=scaffold2508_contigs=3, transcript_loc=scaffold2508_contigs=3:107304-107645 Augustus predicted protein sequence Tobacco scaffold2508_contigs=3~107304-107645 DUF1005 PF06219.7 g94013.t1 - 0.045 12.4 0.1 0.049 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1005) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:416334-416657 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~416334-416657 Cna_B PF05738.8 g107729.t1 - 0.008 15.9 0 4.5 7.1 0 2.2 2 0 0 2 2 2 2 Cna protein B-type domain | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:102478-103158 Augustus predicted protein sequence Tobacco scaffold2408_contigs=11~102478-103158 Nucleoplasmin PF03066.10 g12400.t1 - 0.026 14 5.6 0.027 14 3.9 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:181782-182096 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~181782-182096 SR-25 PF10500.4 g14310.t1 - 1.9 7.8 10.2 2.6 7.4 7.1 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:138948-139298 Augustus predicted protein sequence Tobacco scaffold469_contigs=1~138948-139298 Vault PF01505.13 g113022.t1 - 0.11 12.6 0.1 0.19 11.7 0 1.6 1 0 0 1 1 1 0 Major Vault Protein repeat | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:185105-185957 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~185105-185957 DUF957 PF06117.6 g33639.t1 - 0.0044 16.5 0.7 0.053 13 0.2 2.1 1 1 1 2 2 2 2 Enterobacterial protein of unknown function (DUF957) | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:253313-254881 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~253313-254881 WEMBL PF05701.6 g59635.t1 - 0.0071 14.8 7.2 0.0089 14.5 5 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1296_contigs=2, transcript_loc=scaffold1296_contigs=2:26522-27038 Augustus predicted protein sequence Tobacco scaffold1296_contigs=2~26522-27038 EI24 PF07264.6 g56544.t1 - 0.021 14.2 0.2 0.027 13.9 0.2 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:340839-343339 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~340839-343339 CFTR_R PF14396.1 g69284.t1 - 0.075 12.3 0.7 0.1 11.9 0.5 1.2 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:23992-24647 Augustus predicted protein sequence Tobacco scaffold1485_contigs=2~23992-24647 HrpF PF06266.7 g79779.t1 - 0.018 15.1 0.1 0.022 14.8 0.1 1.3 1 0 0 1 1 1 0 HrpF protein | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:158254-158493 Augustus predicted protein sequence Tobacco scaffold1702_contigs=7~158254-158493 Acetyltransf_7 PF13508.1 g24636.t1 - 0.057 13.5 0 0.13 12.4 0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:236285-237854 Augustus predicted protein sequence Tobacco scaffold674_contigs=5~236285-237854 WH2 PF02205.15 g126072.t1 - 0.77 9.4 2.9 16 5.2 0.1 2.5 2 0 0 2 2 2 0 WH2 motif | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:98819-99644 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~98819-99644 Bet_v_1 PF00407.14 g77982.t1 - 0.13 11.8 0.2 0.19 11.3 0.1 1.4 1 1 0 1 1 1 0 Pathogenesis-related protein Bet v I family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:167020-167352 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~167020-167352 Peptidase_A24 PF01478.13 g68733.t1 - 0.24 11.5 2.5 0.31 11.1 1.8 1.1 1 0 0 1 1 1 0 Type IV leader peptidase family | Ref_seq=scaffold1478_contigs=6, transcript_loc=scaffold1478_contigs=6:76385-76648 Augustus predicted protein sequence Tobacco scaffold1478_contigs=6~76385-76648 DUF2647 PF10839.3 g92106.t1 - 0.13 12.3 1.9 0.21 11.6 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:7524-7862 Augustus predicted protein sequence Tobacco scaffold1983_contigs=2~7524-7862 GbpC PF08363.5 g53763.t1 - 0.29 10.3 2.9 23 4.1 0.1 2.8 1 1 2 3 3 3 0 Glucan-binding protein C | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:69417-71641 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~69417-71641 DUF3647 PF12363.3 g37164.t1 - 0.079 13 0.2 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 Phage protein | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:297136-297366 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~297136-297366 PaaSYMP PF14738.1 g70754.t1 - 0.014 15 0.1 0.02 14.6 0 1.2 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:109774-111496 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~109774-111496 PI31_Prot_C PF08577.6 g34719.t1 - 0.11 13.1 0.1 0.16 12.6 0.1 1.2 1 0 0 1 1 1 0 PI31 proteasome regulator | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:162584-162805 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~162584-162805 GAS PF13851.1 g70756.t1 - 0.011 14.9 0 0.011 14.9 0 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:112242-113245 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~112242-113245 MSV199 PF10553.4 g3473.t1 - 0.053 13.4 0.1 0.06 13.2 0 1.2 1 0 0 1 1 1 0 MSV199 domain | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:119120-119371 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~119120-119371 rve PF00665.21 g106640.t1 - 0.00085 19.4 0 0.0025 17.9 0 1.9 1 1 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:253913-254838 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~253913-254838 DUF1071 PF06378.6 g71266.t1 - 0.042 12.9 0 0.048 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1071) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:385445-385699 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~385445-385699 DIRP PF06584.8 g77681.t1 - 0.023 14.5 0.3 0.036 13.9 0.2 1.4 1 1 0 1 1 1 0 DIRP | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:66137-66475 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~66137-66475 BASP1 PF05466.7 g29929.t1 - 0.25 11.1 1.7 0.29 10.9 1.2 1.1 1 0 0 1 1 1 0 Brain acid soluble protein 1 (BASP1 protein) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:45210-45494 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~45210-45494 MinC_N PF05209.8 g100109.t1 - 0.13 12 0.1 0.22 11.3 0 1.3 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:67531-68215 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~67531-68215 DUF1908 PF08926.6 g94946.t1 - 0.12 11.1 0.2 0.14 10.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:47225-47464 Augustus predicted protein sequence Tobacco scaffold2049_contigs=3~47225-47464 Pox_A_type_inc PF04508.7 g39749.t1 - 5.6 7 5.3 7.3 6.6 0 3 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:156974-158317 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~156974-158317 DUF1313 PF07011.6 g88024.t1 - 0.0067 16 0.9 0.0081 15.8 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1313) | Ref_seq=scaffold1906_contigs=5, transcript_loc=scaffold1906_contigs=5:8610-8930 Augustus predicted protein sequence Tobacco scaffold1906_contigs=5~8610-8930 B3 PF02362.16 g22826.t1 - 0.0034 16.9 0.1 0.007 15.9 0 1.5 1 1 0 1 1 1 1 B3 DNA binding domain | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:462325-463311 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~462325-463311 Bul1_N PF04425.7 g129766.t1 - 0.24 9.8 0.7 0.95 7.9 0.7 1.6 1 1 1 2 2 2 0 Bul1 N terminus | Ref_seq=scaffold3054_contigs=1, transcript_loc=scaffold3054_contigs=1:2072-2888 Augustus predicted protein sequence Tobacco scaffold3054_contigs=1~2072-2888 RinB PF06116.7 g102463.t1 - 0.83 9.3 2.8 1.4 8.6 1.9 1.3 1 0 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:50985-51374 Augustus predicted protein sequence Tobacco scaffold2251_contigs=17~50985-51374 Gb3_synth PF04572.7 g937.t1 - 0.1 12.2 0.4 1.4 8.5 0.2 2.5 1 1 1 2 2 2 0 Alpha 1,4-glycosyltransferase conserved region | Ref_seq=scaffold67_contigs=4, transcript_loc=scaffold67_contigs=4:32587-32985 Augustus predicted protein sequence Tobacco scaffold67_contigs=4~32587-32985 potato_inhibit PF00280.13 g111712.t1 - 0.018 15.2 0 0.026 14.6 0 1.2 1 0 0 1 1 1 0 Potato inhibitor I family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:28267-29620 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~28267-29620 PRP8_domainIV PF12134.3 g121872.t1 - 0.015 14.6 0.5 0.02 14.2 0.4 1.3 1 0 0 1 1 1 0 PRP8 domain IV core | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:616199-617670 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~616199-617670 DBD_Tnp_Mut PF03108.10 g49390.t1 - 0.000000036 32.8 0.2 0.000000055 32.2 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:249608-250318 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~249608-250318 G-7-MTase PF12803.2 g82631.t1 - 0.058 12.5 0.2 0.067 12.3 0.1 1.1 1 0 0 1 1 1 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:48124-49104 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~48124-49104 UPF0547 PF10571.4 g74889.t1 - 1.9 8.2 4.9 0.39 10.4 0.7 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:296588-296875 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~296588-296875 ATHILA PF03078.10 g6740.t1 - 2.8E-009 36 0 3.4E-009 35.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:86319-86729 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~86319-86729 TMF_TATA_bd PF12325.3 g76028.t1 - 0.011 15.4 0.4 0.021 14.5 0.3 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:55012-56023 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~55012-56023 DUF936 PF06075.7 g16892.t1 - 0.074 11.9 0.4 0.086 11.7 0.3 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:88968-89622 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~88968-89622 DBD_Tnp_Mut PF03108.10 g5447.t1 - 1.5E-009 37.2 0.5 2.1E-009 36.7 0.3 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:83536-84198 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~83536-84198 zf-CCHC PF00098.18 g78134.t1 - 0.0015 18.3 0.5 0.0027 17.5 0.3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1640_contigs=5, transcript_loc=scaffold1640_contigs=5:20110-20424 Augustus predicted protein sequence Tobacco scaffold1640_contigs=5~20110-20424 DUF3552 PF12072.3 g80158.t1 - 0.000039 22.9 23.9 0.000039 22.9 16.5 5 1 1 3 5 5 5 3 Domain of unknown function (DUF3552) | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:88403-90541 Augustus predicted protein sequence Tobacco scaffold1710_contigs=11~88403-90541 Transglut_core2 PF13369.1 g755.t1 - 0.11 11.9 0 0.24 10.8 0 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:86479-89912 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~86479-89912 CDC45 PF02724.9 g95754.t1 - 0.51 8.3 15.2 0.52 8.2 10.6 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:267495-268025 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~267495-268025 DUF4061 PF13270.1 g102366.t1 - 0.03 14.3 0.3 0.093 12.8 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4061) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:35042-35251 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~35042-35251 DUF1777 PF08648.7 g91099.t1 - 1.1 8.9 25.7 1.3 8.7 17.8 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1777) | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:180219-180509 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~180219-180509 Strep_SA_rep PF06696.6 g109135.t1 - 0.35 10.6 2.6 0.48 10.2 0.8 1.9 2 0 0 2 2 2 0 Streptococcal surface antigen repeat | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:90654-90986 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~90654-90986 UBN2_3 PF14244.1 g64282.t1 - 0.076 12.5 0 0.092 12.3 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:370651-371920 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~370651-371920 Sigma70_ner PF04546.8 g75583.t1 - 0.03 13.9 0.3 0.03 13.9 0.2 1.4 2 0 0 2 2 2 0 Sigma-70, non-essential region | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:7608-8182 Augustus predicted protein sequence Tobacco scaffold1576_contigs=4~7608-8182 zf-CCHC_5 PF14787.1 g34514.t1 - 0.02 14.3 1 0.034 13.6 0.7 1.4 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:12064-12541 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~12064-12541 DUF329 PF03884.9 g36799.t1 - 0.029 13.9 0 0.041 13.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold900_contigs=1, transcript_loc=scaffold900_contigs=1:12866-13621 Augustus predicted protein sequence Tobacco scaffold900_contigs=1~12866-13621 DUF4219 PF13961.1 g74611.t1 - 0.0079 15.5 0.1 0.014 14.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:3755-4686 Augustus predicted protein sequence Tobacco scaffold1561_contigs=2~3755-4686 POX PF07526.6 g32429.t1 - 0.13 12.4 1 0.15 12.2 0.7 1 1 0 0 1 1 1 0 Associated with HOX | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:126686-126952 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~126686-126952 Copine PF07002.11 g111743.t1 - 0.087 12.5 0.1 0.27 10.9 0 1.8 2 0 0 2 2 2 0 Copine | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:128529-129900 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~128529-129900 Baculo_p47 PF05112.7 g106598.t1 - 0.042 13.2 0.1 0.051 12.9 0.1 1.1 1 0 0 1 1 1 0 Baculovirus P47 protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:156459-156815 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~156459-156815 DBINO PF13892.1 g57310.t1 - 0.0007 19.6 5.2 0.00073 19.5 3.6 1.1 1 0 0 1 1 1 1 DNA-binding domain | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:34327-34581 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~34327-34581 CK2S PF15011.1 g123567.t1 - 0.065 13 0 0.099 12.4 0 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:14887-15757 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~14887-15757 zf-CCHC PF00098.18 g91245.t1 - 0.0023 17.7 0.3 0.0033 17.2 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:83439-83777 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~83439-83777 DUF4219 PF13961.1 g31767.t1 - 0.0095 15.3 0.1 0.017 14.5 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:242076-242354 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~242076-242354 DUF930 PF06059.7 g5616.t1 - 0.064 13.4 0 0.075 13.2 0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF930) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:569648-570155 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~569648-570155 Trypsin PF00089.21 g33798.t1 - 0.11 12.1 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Trypsin | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:564650-564922 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~564650-564922 YjbE PF11106.3 g83114.t1 - 1.8 8.5 11.4 4.4 7.3 0.9 2.3 1 1 1 2 2 2 0 Exopolysaccharide production protein YjbE | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:113543-115375 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~113543-115375 IFT46_B_C PF12317.3 g41108.t1 - 0.096 12 0.4 0.23 10.8 0.2 1.7 1 1 1 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:686623-687888 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~686623-687888 zf-CCHC PF00098.18 g39890.t1 - 0.0043 16.9 1.9 0.0043 16.9 1.3 1.9 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:87148-88409 Augustus predicted protein sequence Tobacco scaffold962_contigs=5~87148-88409 IFP_35_N PF07334.8 g83490.t1 - 0.0056 16.6 1.9 0.014 15.3 1.3 1.7 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:103915-104469 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~103915-104469 FAR1 PF03101.10 g52947.t1 - 0.000041 24 0.1 0.000052 23.6 0 1.2 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:119764-120568 Augustus predicted protein sequence Tobacco scaffold1183_contigs=24~119764-120568 PGG PF13962.1 g101621.t1 - 0.5 10 2.6 0.4 10.3 1.2 1.4 1 1 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold2214_contigs=5, transcript_loc=scaffold2214_contigs=5:29661-29882 Augustus predicted protein sequence Tobacco scaffold2214_contigs=5~29661-29882 DUF3847 PF12958.2 g116849.t1 - 0.06 13.1 1.3 0.12 12.1 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) | Ref_seq=scaffold2677_contigs=10, transcript_loc=scaffold2677_contigs=10:30310-31692 Augustus predicted protein sequence Tobacco scaffold2677_contigs=10~30310-31692 BDV_P24 PF06595.6 g106609.t1 - 0.048 13.4 0.1 0.063 13 0 1.1 1 0 0 1 1 1 0 Borna disease virus P24 protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:178267-179733 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~178267-179733 DUF3482 PF11981.3 g111620.t1 - 0.25 10.5 3.7 0.31 10.2 2.5 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:63207-63638 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~63207-63638 zf-CCHC PF00098.18 g51336.t1 - 0.00087 19.1 0.3 0.0014 18.4 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:75745-77103 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~75745-77103 Peptidase_M20 PF01546.23 g94162.t1 - 0.13 11.7 0 0.16 11.4 0 1.2 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:79453-80871 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~79453-80871 Sushi PF00084.15 g65096.t1 - 0.084 13.2 0 0.16 12.3 0 1.5 1 0 0 1 1 1 0 Sushi domain (SCR repeat) | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:27835-29088 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~27835-29088 Phenol_monoox PF04663.7 g111018.t1 - 0.057 13.1 0 0.1 12.3 0 1.4 1 0 0 1 1 1 0 Phenol hydroxylase conserved region | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:55047-55355 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~55047-55355 HCaRG PF07258.9 g25249.t1 - 0.11 12 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 HCaRG protein | Ref_seq=scaffold691_contigs=5, transcript_loc=scaffold691_contigs=5:13223-13609 Augustus predicted protein sequence Tobacco scaffold691_contigs=5~13223-13609 CBM_14 PF01607.19 g9022.t1 - 0.039 13.8 0.5 2.8 7.9 0.1 2.1 2 0 0 2 2 2 0 Chitin binding Peritrophin-A domain | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:82381-82581 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~82381-82581 zf-CCHC_6 PF15288.1 g3117.t1 - 0.092 12.4 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold226_contigs=4, transcript_loc=scaffold226_contigs=4:26858-27190 Augustus predicted protein sequence Tobacco scaffold226_contigs=4~26858-27190 Tim54 PF11711.3 g89004.t1 - 1.3 7.4 4.1 1.1 7.7 2.2 1.3 1 1 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:424067-424561 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~424067-424561 ATHILA PF03078.10 g41280.t1 - 3E-012 45.8 1.7 3.7E-012 45.5 1.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:28638-29198 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~28638-29198 F_actin_cap_B PF01115.12 g62324.t1 - 0.13 11.4 0.2 0.14 11.3 0.1 1 1 0 0 1 1 1 0 F-actin capping protein, beta subunit | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:430496-430711 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~430496-430711 DUF4219 PF13961.1 g113393.t1 - 0.00003 23.3 1.6 0.000041 22.8 0.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:132205-132495 Augustus predicted protein sequence Tobacco scaffold2628_contigs=7~132205-132495 PsbL PF02419.12 g53653.t1 - 0.088 12.2 0.2 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 PsbL protein | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:35834-36439 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~35834-36439 GAS PF13851.1 g128699.t1 - 0.028 13.6 3.5 0.18 11 2.5 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2883_contigs=1, transcript_loc=scaffold2883_contigs=1:1299-1676 Augustus predicted protein sequence Tobacco scaffold2883_contigs=1~1299-1676 MGC-24 PF05283.6 g12943.t1 - 0.082 12.6 1.2 0.09 12.5 0.8 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold438_contigs=2, transcript_loc=scaffold438_contigs=2:2181-2710 Augustus predicted protein sequence Tobacco scaffold438_contigs=2~2181-2710 TLP-20 PF06088.6 g98204.t1 - 0.056 13.1 1 0.077 12.6 0.7 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:161310-163438 Augustus predicted protein sequence Tobacco scaffold2154_contigs=6~161310-163438 ATHILA PF03078.10 g32729.t1 - 0.0000011 27.5 0 0.0000012 27.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:779414-779671 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~779414-779671 Chromo PF00385.19 g117448.t1 - 0.0000037 26.5 0.1 0.0000052 26 0.1 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:184649-185002 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~184649-185002 ATPase-cat_bd PF12156.3 g114162.t1 - 0.083 13.4 0.1 16 6.1 0 2.1 1 1 1 2 2 2 0 Putative metal-binding domain of cation transport ATPase | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:7896-8443 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~7896-8443 EzrA PF06160.7 g104106.t1 - 0.0046 15.2 6.4 0.0055 14.9 4.5 1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:11494-11879 Augustus predicted protein sequence Tobacco scaffold2332_contigs=1~11494-11879 SEC-C PF02810.10 g115090.t1 - 5.6 6.5 7.3 16 5.1 0.6 2.2 2 0 0 2 2 2 0 SEC-C motif | Ref_seq=scaffold2658_contigs=12, transcript_loc=scaffold2658_contigs=12:39791-40240 Augustus predicted protein sequence Tobacco scaffold2658_contigs=12~39791-40240 RRP14 PF15459.1 g64438.t1 - 0.56 10.3 11.8 0.96 9.5 8.2 1.4 1 0 0 1 1 1 0 60S ribosome biogenesis protein Rrp14 | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:58067-58801 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~58067-58801 Menin PF05053.8 g74622.t1 - 2 6.5 5.3 2.1 6.4 3.7 1.1 1 0 0 1 1 1 0 Menin | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:12782-13231 Augustus predicted protein sequence Tobacco scaffold1561_contigs=2~12782-13231 FlxA PF14282.1 g10412.t1 - 0.34 10.8 3.5 0.54 10.2 0.1 2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:314095-314331 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~314095-314331 DUF2215 PF10225.4 g76650.t1 - 0.0099 15.3 3.3 0.012 15 2.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1617_contigs=2, transcript_loc=scaffold1617_contigs=2:53687-54285 Augustus predicted protein sequence Tobacco scaffold1617_contigs=2~53687-54285 TAF4 PF05236.9 g67594.t1 - 0.023 14 5.5 0.021 14 3.8 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:20510-20746 Augustus predicted protein sequence Tobacco scaffold1450_contigs=4~20510-20746 CBM-like PF14683.1 g40395.t1 - 0.053 13.1 1.7 0.12 12 0.5 1.8 1 1 1 2 2 2 0 Polysaccharide lyase family 4, domain III | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:35046-35522 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~35046-35522 FhuF_C PF11575.3 g31409.t1 - 0.046 13.3 1.5 6.1 6.5 0.1 2.5 2 0 0 2 2 2 0 FhuF 2Fe-2S C-terminal domain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:32676-35303 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~32676-35303 TMCO5 PF14992.1 g10395.t1 - 0.039 13 3.7 0.054 12.6 2.5 1.1 1 0 0 1 1 1 0 TMCO5 family | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:279407-280426 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~279407-280426 ATHILA PF03078.10 g12298.t1 - 0.0012 17.5 0.2 0.0094 14.5 0.1 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:481979-482605 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~481979-482605 TraU PF06834.6 g53173.t1 - 0.029 13.4 0 0.038 13 0 1.2 1 0 0 1 1 1 0 TraU protein | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:102651-103297 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~102651-103297 ASFV_J13L PF05568.6 g24375.t1 - 0.037 13.5 0.1 0.04 13.4 0.1 1 1 0 0 1 1 1 0 African swine fever virus J13L protein | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:68829-69038 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~68829-69038 DUF2464 PF10240.4 g8740.t1 - 0.29 10.4 1.8 0.34 10.2 1.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2464) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:103689-104042 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~103689-104042 ATHILA PF03078.10 g41790.t1 - 0.00038 19.1 0 0.00042 19 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:9218-9514 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~9218-9514 GD_AH_C PF04295.8 g62864.t1 - 0.027 13.1 0 0.036 12.7 0 1.1 1 0 0 1 1 1 0 D-galactarate dehydratase / Altronate hydrolase, C terminus | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:659672-660025 Augustus predicted protein sequence Tobacco scaffold1357_contigs=25~659672-660025 PGAMP PF07644.6 g6791.t1 - 0.081 12.6 0.1 21 4.9 0 2.8 2 0 0 2 2 2 0 Planctomycete PGAMP | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:204112-204915 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~204112-204915 PGG PF13962.1 g87962.t1 - 0.29 10.7 1.6 0.38 10.3 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:36461-37232 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~36461-37232 DUF4377 PF14302.1 g129837.t1 - 0.058 13.2 0.1 5.9 6.8 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4377) | Ref_seq=scaffold3100_contigs=1, transcript_loc=scaffold3100_contigs=1:2168-2644 Augustus predicted protein sequence Tobacco scaffold3100_contigs=1~2168-2644 DUF1347 PF07079.6 g46883.t1 - 0.0085 14.3 0.1 0.01 14.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:26311-26772 Augustus predicted protein sequence Tobacco scaffold1081_contigs=4~26311-26772 DUF2740 PF10872.3 g111097.t1 - 0.058 13 1.6 2.4 7.8 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2740) | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:68370-68969 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~68370-68969 Gyro_capsid PF04162.7 g55855.t1 - 0.077 11.2 0.1 0.087 11 0.1 1.1 1 0 0 1 1 1 0 Gyrovirus capsid protein (VP1) | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:109443-109769 Augustus predicted protein sequence Tobacco scaffold1233_contigs=6~109443-109769 SRP_SPB PF02978.14 g77653.t1 - 0.0088 16.2 0.7 0.011 16 0.5 1.2 1 0 0 1 1 1 1 Signal peptide binding domain | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:42750-43004 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~42750-43004 CENP-R PF06729.7 g20425.t1 - 0.03 13.9 0.3 0.041 13.5 0.2 1.2 1 0 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:258119-259605 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~258119-259605 DUF4138 PF13595.1 g64030.t1 - 0.11 11.4 0 0.11 11.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4138) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:202141-202470 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~202141-202470 PAT1 PF09770.4 g12209.t1 - 3.2 5.8 13.2 3.5 5.7 9.2 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:338275-338814 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~338275-338814 DUF4463 PF14703.1 g129449.t1 - 0.00000071 29.6 0.2 2.1 8.9 0 3.1 3 0 0 3 3 3 3 Domain of unknown function (DUF4463) | Ref_seq=scaffold2957_contigs=1, transcript_loc=scaffold2957_contigs=1:686-1682 Augustus predicted protein sequence Tobacco scaffold2957_contigs=1~686-1682 Ponericin PF07442.6 g360.t1 - 0.1 12.4 1.4 0.23 11.3 1 1.5 1 0 0 1 1 1 0 Ponericin | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:10054-11419 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~10054-11419 SfsA PF03749.8 g79550.t1 - 0.14 11.5 0 0.18 11.2 0 1.1 1 0 0 1 1 1 0 Sugar fermentation stimulation protein | Ref_seq=scaffold1697_contigs=1, transcript_loc=scaffold1697_contigs=1:19010-19813 Augustus predicted protein sequence Tobacco scaffold1697_contigs=1~19010-19813 DUF3521 PF12035.3 g88528.t1 - 0.74 9.7 4.1 1.6 8.6 0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3521) | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:35074-36201 Augustus predicted protein sequence Tobacco scaffold1928_contigs=20~35074-36201 Umbravirus_LDM PF04817.7 g11787.t1 - 0.029 13.5 1.6 0.031 13.4 1.1 1.2 1 0 0 1 1 1 0 Umbravirus long distance movement (LDM) family | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:215080-215526 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~215080-215526 MRI PF15325.1 g107460.t1 - 0.12 13.3 0.2 0.16 12.9 0.1 1.1 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:56886-57311 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~56886-57311 DUF950 PF06106.6 g69832.t1 - 0.03 14.3 0 0.034 14.2 0 1.1 1 0 0 1 1 1 0 Staphylococcus protein of unknown function (DUF950) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:276503-276799 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~276503-276799 XRN_N PF03159.13 g75632.t1 - 0.032 13.6 0 0.034 13.5 0 1.1 1 0 0 1 1 1 0 XRN 5'-3' exonuclease N-terminus | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:119326-121820 Augustus predicted protein sequence Tobacco scaffold1576_contigs=4~119326-121820 TMEM37 PF15108.1 g104079.t1 - 0.049 13.3 0.2 0.053 13.2 0.1 1.3 1 1 0 1 1 1 0 Voltage-dependent calcium channel gamma-like subunit protein family | Ref_seq=scaffold2328_contigs=3, transcript_loc=scaffold2328_contigs=3:10819-11064 Augustus predicted protein sequence Tobacco scaffold2328_contigs=3~10819-11064 YdjO PF14169.1 g65285.t1 - 0.0031 16.9 0.8 0.0044 16.4 0.5 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:194865-195065 Augustus predicted protein sequence Tobacco scaffold1403_contigs=11~194865-195065 DUF3007 PF11460.3 g87575.t1 - 0.14 12.2 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:26594-27989 Augustus predicted protein sequence Tobacco scaffold1886_contigs=2~26594-27989 FlhD PF05247.8 g119712.t1 - 0.03 14.3 5 0.25 11.3 0.4 2.7 1 1 1 2 2 2 0 Flagellar transcriptional activator (FlhD) | Ref_seq=scaffold2717_contigs=3, transcript_loc=scaffold2717_contigs=3:8381-9274 Augustus predicted protein sequence Tobacco scaffold2717_contigs=3~8381-9274 DUF2806 PF10987.3 g107468.t1 - 2.4 7.6 7.3 1.4 8.4 0.9 2 1 1 1 2 2 2 0 Protein of unknown function (DUF2806) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:64124-64944 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~64124-64944 DUF3275 PF11679.3 g11335.t1 - 0.26 10.8 1.8 0.28 10.8 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:213695-214020 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~213695-214020 DUF4225 PF13988.1 g110392.t1 - 0.069 12.6 0.1 0.092 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:56470-57026 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~56470-57026 zf-CCHC PF00098.18 g85659.t1 - 0.069 13.1 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:294526-295152 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~294526-295152 Snapin_Pallidin PF14712.1 g91729.t1 - 0.084 13.1 0.3 0.12 12.7 0.2 1.2 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:4982-5520 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~4982-5520 FlxA PF14282.1 g74556.t1 - 0.0039 17 1.4 0.027 14.4 0.2 2 2 0 0 2 2 2 1 FlxA-like protein | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:136855-137184 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~136855-137184 Nup160 PF11715.3 g30037.t1 - 0.058 11.5 0 0.062 11.4 0 1 1 0 0 1 1 1 0 Nucleoporin Nup120/160 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:269426-269831 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~269426-269831 LigB PF02900.13 g41880.t1 - 0.096 11.6 0 0.11 11.5 0 1.1 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:146174-147285 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~146174-147285 DCR PF14047.1 g8261.t1 - 0.068 13.4 0 12 6.2 0 2.3 2 0 0 2 2 2 0 Dppa2/4 conserved region | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:45636-47900 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~45636-47900 FAP PF07174.6 g49089.t1 - 1.7 7.8 12.4 2.2 7.5 8.6 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:190900-191244 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~190900-191244 Matrilin_ccoil PF10393.4 g98557.t1 - 0.000016 24.1 0.1 0.023 14 0 2.2 2 0 0 2 2 2 2 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:168798-169836 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~168798-169836 Chitin_bind_4 PF00379.18 g10340.t1 - 3.1 8.1 6.8 13 6.1 1.4 2.8 1 1 1 2 2 2 0 Insect cuticle protein | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:130479-131540 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~130479-131540 Adenylsucc_synt PF00709.16 g3858.t1 - 0.13 10.8 0 0.21 10.2 0 1.3 1 0 0 1 1 1 0 Adenylosuccinate synthetase | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:10739-11230 Augustus predicted protein sequence Tobacco scaffold245_contigs=3~10739-11230 Hydrophobin_2 PF06766.6 g69394.t1 - 0.85 9.3 10.5 55 3.5 0.2 4.1 2 2 2 4 4 4 0 Fungal hydrophobin | Ref_seq=scaffold1487_contigs=3, transcript_loc=scaffold1487_contigs=3:66804-68547 Augustus predicted protein sequence Tobacco scaffold1487_contigs=3~66804-68547 NUDE_C PF04880.8 g128571.t1 - 0.025 14.9 0.5 0.033 14.5 0.3 1.2 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:12857-13682 Augustus predicted protein sequence Tobacco scaffold2876_contigs=1~12857-13682 O-ag_pol_Wzy PF14296.1 g91475.t1 - 0.055 12 0.1 0.055 12 0 1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:58323-58547 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~58323-58547 Cyt_c_ox_IV PF12270.3 g48890.t1 - 0.037 13.7 0 0.048 13.3 0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:557037-557815 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~557037-557815 Spore_YunB PF09560.5 g2158.t1 - 0.083 12.6 0.2 0.12 12 0.1 1.2 1 1 0 1 1 1 0 Sporulation protein YunB (Spo_YunB) | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:94081-94825 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~94081-94825 DUF2084 PF09857.4 g29541.t1 - 0.0057 16.3 0.1 0.0074 15.9 0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2084) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:162472-163098 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~162472-163098 DBD_Tnp_Mut PF03108.10 g47274.t1 - 0.0019 17.7 0.8 0.0025 17.3 0.1 1.6 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:90702-91028 Augustus predicted protein sequence Tobacco scaffold1091_contigs=17~90702-91028 Sec31 PF11549.3 g60424.t1 - 0.093 12.3 0 0.14 11.7 0 1.3 1 0 0 1 1 1 0 Protein transport protein SEC31 | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:98656-98901 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~98656-98901 RapA_C PF12137.3 g117666.t1 - 0.034 13 0.1 0.038 12.8 0.1 1 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal | Ref_seq=scaffold2691_contigs=13, transcript_loc=scaffold2691_contigs=13:2112-2354 Augustus predicted protein sequence Tobacco scaffold2691_contigs=13~2112-2354 NPV_P10 PF05531.7 g23229.t1 - 0.051 13.8 0.4 0.61 10.3 0 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:54521-54894 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~54521-54894 TRI9 PF08195.6 g47502.t1 - 1.2 8.8 0.1 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 TRI9 protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:133438-134216 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~133438-134216 DUF1075 PF06388.6 g118397.t1 - 0.016 14.8 3 0.018 14.7 1.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:615243-615539 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~615243-615539 Baculo_IE-1 PF05290.6 g69435.t1 - 0.03 14 0 0.032 13.9 0 1.1 1 0 0 1 1 1 0 Baculovirus immediate-early protein (IE-0) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:3826-4032 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~3826-4032 Nodulin_late PF07127.6 g3700.t1 - 0.17 12 2 12 6.1 0.3 2.3 2 0 0 2 2 2 0 Late nodulin protein | Ref_seq=scaffold238_contigs=5, transcript_loc=scaffold238_contigs=5:180921-181316 Augustus predicted protein sequence Tobacco scaffold238_contigs=5~180921-181316 HTH_AraC PF00165.18 g18049.t1 - 0.13 12.1 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:49172-49465 Augustus predicted protein sequence Tobacco scaffold541_contigs=3~49172-49465 TFIIF_alpha PF05793.7 g81501.t1 - 4.1 5.6 13.8 4.2 5.6 9.5 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:107143-107589 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~107143-107589 FAR1 PF03101.10 g51127.t1 - 0.0053 17.2 0.1 0.0073 16.8 0 1.2 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:2029-2916 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~2029-2916 Rib_recp_KP_reg PF05104.7 g105322.t1 - 4.4 7.8 8.5 4.1 7.9 2.7 1.9 1 1 1 2 2 2 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:333769-334110 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~333769-334110 DUF904 PF06005.7 g15933.t1 - 0.059 13.6 1.8 0.13 12.5 1.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:100070-100726 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~100070-100726 zf-CCHC PF00098.18 g98549.t1 - 0.0015 18.3 1.5 0.0025 17.6 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:135182-135901 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~135182-135901 NST1 PF13945.1 g51415.t1 - 0.15 12 2.6 0.17 11.9 1.8 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1154_contigs=1, transcript_loc=scaffold1154_contigs=1:10031-10412 Augustus predicted protein sequence Tobacco scaffold1154_contigs=1~10031-10412 zf-CCHC PF00098.18 g31718.t1 - 0.0012 18.7 0.8 0.0023 17.7 0.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:151430-152506 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~151430-152506 ATHILA PF03078.10 g6201.t1 - 0.000027 22.9 0 0.000027 22.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:240625-240831 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~240625-240831 YbbR PF07949.7 g77450.t1 - 0.1 12.7 0.1 0.39 10.8 0 1.8 1 1 1 2 2 2 0 YbbR-like protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:115160-115624 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~115160-115624 DUF1011 PF06237.7 g78102.t1 - 0.099 12.5 0.7 0.13 12.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1011) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:414826-415092 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~414826-415092 AMOP PF03782.12 g91048.t1 - 0.12 12.3 0 0.15 12 0 1.2 1 0 0 1 1 1 0 AMOP domain | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:7291-7956 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~7291-7956 DUF1985 PF09331.6 g83069.t1 - 0.00017 21.4 0 0.00024 20.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:50656-52307 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~50656-52307 Sec20 PF03908.8 g42166.t1 - 0.14 11.8 0 0.21 11.3 0 1.2 1 0 0 1 1 1 0 Sec20 | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:183027-184417 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~183027-184417 FlxA PF14282.1 g28291.t1 - 0.015 15.2 4.5 0.015 15.2 3.1 2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:122249-122785 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~122249-122785 ADC PF06314.6 g105175.t1 - 0.0073 15.6 0.1 0.03 13.6 0 1.8 2 0 0 2 2 2 1 Acetoacetate decarboxylase (ADC) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:498317-500813 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~498317-500813 ATHILA PF03078.10 g35168.t1 - 0.00000038 29 0.9 0.08 11.5 0 3.1 2 1 1 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:141806-142957 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~141806-142957 TMF_DNA_bd PF12329.3 g95947.t1 - 0.0021 17.8 1.6 0.0034 17.1 1.1 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold2080_contigs=18, transcript_loc=scaffold2080_contigs=18:69991-70317 Augustus predicted protein sequence Tobacco scaffold2080_contigs=18~69991-70317 DBD_Tnp_Mut PF03108.10 g88898.t1 - 0.000023 23.8 0 0.000041 23 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:45198-49203 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~45198-49203 zf-CCHC_6 PF15288.1 g25279.t1 - 1.4 8.6 9.6 8.6 6.1 0.5 3.2 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold693_contigs=3, transcript_loc=scaffold693_contigs=3:7387-7716 Augustus predicted protein sequence Tobacco scaffold693_contigs=3~7387-7716 DUF4597 PF15366.1 g71277.t1 - 0.0012 18.3 0.1 0.0014 18.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4597) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:400358-401125 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~400358-401125 PLRV_ORF5 PF01690.12 g16919.t1 - 3.2 6.8 9.6 4.3 6.3 6.7 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:159073-160135 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~159073-160135 FliW PF02623.10 g64069.t1 - 0.084 12.4 0 0.14 11.7 0 1.4 1 1 0 1 1 1 0 FliW protein | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:270730-271038 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~270730-271038 NUC173 PF08161.7 g56509.t1 - 0.018 14.3 0 0.021 14.1 0 1.1 1 0 0 1 1 1 0 NUC173 domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:290079-290390 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~290079-290390 FlgN PF05130.7 g54741.t1 - 0.016 15.4 0.3 0.021 15 0.2 1.1 1 0 0 1 1 1 0 FlgN protein | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:208160-208636 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~208160-208636 Cation_ATPase_C PF00689.16 g82009.t1 - 0.0054 16.2 0.7 0.0073 15.8 0.5 1.2 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:469146-470308 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~469146-470308 Herpes_U5 PF05999.6 g29858.t1 - 0.028 13 0.1 0.032 12.8 0.1 1 1 0 0 1 1 1 0 Herpesvirus U5-like family | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:274218-276285 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~274218-276285 DUF3520 PF12034.3 g56194.t1 - 0.048 13.7 0 0.058 13.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3520) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:215243-216337 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~215243-216337 HSBP1 PF06825.7 g28052.t1 - 0.075 12.6 0.8 0.12 11.9 0.5 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:827919-828789 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~827919-828789 PAT1 PF09770.4 g56085.t1 - 8.8 4.4 9.6 9.2 4.3 6.7 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:33632-34066 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~33632-34066 TT_ORF2 PF02957.10 g20904.t1 - 4.5 8 5.4 6.9 7.3 3.3 1.6 1 1 1 2 2 2 0 TT viral ORF2 | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:1-1593 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~1-1593 Autoind_bind PF03472.10 g51728.t1 - 0.14 11.4 0 0.17 11.1 0 1.1 1 0 0 1 1 1 0 Autoinducer binding domain | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:82982-83188 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~82982-83188 DUF1434 PF07254.7 g12354.t1 - 1.6 8.5 4.6 3 7.6 3.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1434) | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:5051-6599 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~5051-6599 DUF3089 PF11288.3 g87079.t1 - 0.038 13.1 0.2 0.042 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:84734-85033 Augustus predicted protein sequence Tobacco scaffold1866_contigs=5~84734-85033 DUF1125 PF06563.6 g72413.t1 - 0.026 14.1 0.1 5.6 6.7 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1125) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1056877-1057434 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1056877-1057434 RVT_3 PF13456.1 g7606.t1 - 0.00034 20.3 0 0.002 17.8 0 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:447641-447988 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~447641-447988 CRF PF00473.12 g70916.t1 - 0.00043 20.3 0.6 1.4 9 0 2.6 2 0 0 2 2 2 2 Corticotropin-releasing factor family | Ref_seq=scaffold1498_contigs=4, transcript_loc=scaffold1498_contigs=4:110058-111071 Augustus predicted protein sequence Tobacco scaffold1498_contigs=4~110058-111071 BUD22 PF09073.5 g112618.t1 - 5.9 5.8 8.1 6.4 5.7 5.6 1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:341102-341350 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~341102-341350 HAUS4 PF14735.1 g107380.t1 - 0.0087 15.3 0.9 0.0092 15.3 0.6 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1254122-1254346 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1254122-1254346 O-ag_pol_Wzy PF14296.1 g67472.t1 - 0.096 11.2 0.5 0.11 11 0.3 1.1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:333843-334566 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~333843-334566 K-box PF01486.12 g127584.t1 - 0.099 12.4 0 0.13 12 0 1.2 1 0 0 1 1 1 0 K-box region | Ref_seq=scaffold2830_contigs=1, transcript_loc=scaffold2830_contigs=1:30701-30922 Augustus predicted protein sequence Tobacco scaffold2830_contigs=1~30701-30922 RDV-p3 PF09231.5 g90226.t1 - 0.13 9.6 0 0.13 9.6 0 1 1 0 0 1 1 1 0 Rice dwarf virus p3 | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:402920-403240 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~402920-403240 DUF4172 PF13776.1 g39785.t1 - 0.096 12.8 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:225014-225361 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~225014-225361 PI3_PI4_kinase PF00454.22 g64975.t1 - 0.083 12.3 0.6 0.11 12 0.4 1.1 1 0 0 1 1 1 0 Phosphatidylinositol 3- and 4-kinase | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:122817-123095 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~122817-123095 eIF-3c_N PF05470.7 g60891.t1 - 0.11 10.5 0.1 0.12 10.4 0.1 1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:519242-520033 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~519242-520033 Pex14_N PF04695.8 g31468.t1 - 0.002 18.1 2.6 0.019 14.9 0.1 2.3 2 1 0 2 2 2 1 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:160677-161443 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~160677-161443 Myticin-prepro PF10690.4 g55470.t1 - 0.63 10 2.7 1.2 9.2 0.8 2.2 1 1 1 2 2 2 0 Myticin pre-proprotein from the mussel | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:223557-224431 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~223557-224431 ATHILA PF03078.10 g61703.t1 - 0.047 12.2 0 0.063 11.8 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:84456-85793 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~84456-85793 Sigma70_ner PF04546.8 g96109.t1 - 0.87 9.1 4.2 1.5 8.3 2.9 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold2096_contigs=7, transcript_loc=scaffold2096_contigs=7:31601-32164 Augustus predicted protein sequence Tobacco scaffold2096_contigs=7~31601-32164 GerPB PF10803.3 g119247.t1 - 0.018 14.8 0.1 0.025 14.3 0.1 1.2 1 0 0 1 1 1 0 Spore germination GerPB | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:53272-53773 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~53272-53773 YdjO PF14169.1 g104288.t1 - 0.14 11.5 0.1 0.26 10.7 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:383496-384020 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~383496-384020 GH-E PF14410.1 g57274.t1 - 0.11 12.6 1 0.13 12.4 0.4 1.4 1 1 0 1 1 1 0 HNH/ENDO VII superfamily nuclease with conserved GHE residues | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:102421-103088 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~102421-103088 PDCD2_C PF04194.8 g8108.t1 - 0.065 12.8 0 0.069 12.7 0 1.2 1 0 0 1 1 1 0 Programmed cell death protein 2, C-terminal putative domain | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:46517-47417 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~46517-47417 MOR2-PAG1_C PF14225.1 g94617.t1 - 0.024 14.3 0 0.029 14.1 0 1.1 1 0 0 1 1 1 0 Cell morphogenesis C-terminal | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:179269-179574 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~179269-179574 ATP-synt_E_2 PF08112.6 g112357.t1 - 0.011 15.7 0 9.3 6.4 0 2.8 3 0 0 3 3 3 0 ATP synthase epsilon subunit | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:180436-181482 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~180436-181482 Rox3 PF08633.5 g117976.t1 - 0.013 15.8 0.6 0.015 15.6 0.4 1.2 1 0 0 1 1 1 0 Rox3 mediator complex subunit | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:176026-176606 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~176026-176606 FH2 PF02181.18 g102287.t1 - 0.012 14.5 0 0.013 14.3 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:172129-172455 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~172129-172455 Keratin PF02422.11 g48032.t1 - 0.014 15.3 1.4 0.033 14.1 1 1.6 1 0 0 1 1 1 0 Keratin | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:5543-7098 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~5543-7098 DBD_Tnp_Mut PF03108.10 g113973.t1 - 4.2E-009 35.8 0.2 6.5E-009 35.2 0.1 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:4089-4754 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~4089-4754 DpnD-PcfM PF14207.1 g65299.t1 - 0.11 12.2 0.4 0.23 11.2 0.3 1.5 1 1 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:225175-227109 Augustus predicted protein sequence Tobacco scaffold1403_contigs=11~225175-227109 DUF3839 PF12943.2 g12284.t1 - 0.028 13.6 0 5.2 6.1 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF3839) | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:462346-462814 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~462346-462814 CBM_20 PF00686.14 g54213.t1 - 0.03 13.9 0 0.034 13.7 0 1.1 1 0 0 1 1 1 0 Starch binding domain | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:25806-26036 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~25806-26036 DUF570 PF04489.8 g82563.t1 - 0.06 11.7 0 0.06 11.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF570) | Ref_seq=scaffold1752_contigs=1, transcript_loc=scaffold1752_contigs=1:19988-20471 Augustus predicted protein sequence Tobacco scaffold1752_contigs=1~19988-20471 M3 PF09213.5 g66653.t1 - 0.13 10.7 0 0.14 10.6 0 1 1 0 0 1 1 1 0 M3 | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:355760-355978 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~355760-355978 LRS4 PF10422.4 g115493.t1 - 0.0084 15.4 1.1 0.0093 15.3 0.8 1 1 0 0 1 1 1 1 Monopolin complex subunit LRS4 | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:510676-510969 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~510676-510969 PAS_6 PF08348.6 g114222.t1 - 0.013 15 0.2 0.017 14.7 0.1 1.3 1 0 0 1 1 1 0 YheO-like PAS domain | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:289433-289696 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~289433-289696 CDRN PF05174.7 g125680.t1 - 0.018 14.5 0 0.042 13.3 0 1.5 1 0 0 1 1 1 0 Cysteine-rich D. radiodurans N terminus | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:50916-53753 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~50916-53753 Mlo PF03094.10 g103784.t1 - 0.035 12.2 0 0.038 12.1 0 1.1 1 0 0 1 1 1 0 Mlo family | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:42565-42888 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~42565-42888 DUF4219 PF13961.1 g53189.t1 - 0.000038 22.9 0.2 0.000064 22.2 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:125943-127082 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~125943-127082 zf-LITAF-like PF10601.4 g69555.t1 - 0.12 12.2 0 0.15 11.9 0 1.2 1 0 0 1 1 1 0 LITAF-like zinc ribbon domain | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:415227-415955 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~415227-415955 Resistin PF06954.6 g38614.t1 - 0.19 12 0.2 0.19 12 0.2 1.6 2 0 0 2 2 2 0 Resistin | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:203052-203393 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~203052-203393 zf-CCHC PF00098.18 g24035.t1 - 0.0034 17.2 1.7 0.0053 16.6 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold659_contigs=1, transcript_loc=scaffold659_contigs=1:68709-69023 Augustus predicted protein sequence Tobacco scaffold659_contigs=1~68709-69023 MUG2_C PF08593.5 g21542.t1 - 0.56 10.4 4.2 3.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:70814-71053 Augustus predicted protein sequence Tobacco scaffold595_contigs=2~70814-71053 ABC2_membrane PF01061.19 g86318.t1 - 0.021 13.9 1.9 0.028 13.6 1.3 1.1 1 0 0 1 1 1 0 ABC-2 type transporter | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:38696-39058 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~38696-39058 DUF3759 PF12585.3 g47670.t1 - 0.11 12.4 0.2 0.39 10.6 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3759) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:490359-490931 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~490359-490931 SAB PF04382.8 g100081.t1 - 0.035 13.7 0.1 0.071 12.8 0.1 1.5 1 0 0 1 1 1 0 SAB domain | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:4699-6908 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~4699-6908 TFIIA PF03153.8 g84538.t1 - 0.028 14.3 12.3 0.03 14.2 8.5 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:133795-134109 Augustus predicted protein sequence Tobacco scaffold1823_contigs=11~133795-134109 DUF4253 PF14062.1 g86155.t1 - 0.068 12.8 0 0.081 12.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:59289-59582 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~59289-59582 PT PF04886.7 g97791.t1 - 0.15 11.3 4 0.34 10.2 2.8 1.7 1 0 0 1 1 1 0 PT repeat | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:177848-178096 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~177848-178096 DUF1263 PF06882.7 g39353.t1 - 0.0008 18.9 0.1 0.00087 18.8 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1263) | Ref_seq=scaffold953_contigs=8, transcript_loc=scaffold953_contigs=8:204884-205144 Augustus predicted protein sequence Tobacco scaffold953_contigs=8~204884-205144 DUF573 PF04504.9 g88535.t1 - 0.027 14.7 0.6 0.036 14.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF573 | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:59778-60116 Augustus predicted protein sequence Tobacco scaffold1928_contigs=20~59778-60116 zf-CCHC_5 PF14787.1 g122625.t1 - 0.0001 21.7 4.2 0.00025 20.4 2.9 1.6 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:4351-8026 Augustus predicted protein sequence Tobacco scaffold2747_contigs=3~4351-8026 DUF2171 PF09939.4 g3870.t1 - 0.088 12.8 0 0.14 12.1 0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:32461-33060 Augustus predicted protein sequence Tobacco scaffold245_contigs=3~32461-33060 v110 PF01639.12 g115911.t1 - 2.8 7.5 5.4 6.5 6.3 3.7 1.6 1 1 0 1 1 1 0 Viral family 110 | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:237061-237468 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~237061-237468 DUF2746 PF10874.3 g66825.t1 - 0.1 12.8 0.1 0.16 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2746) | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:57381-58459 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~57381-58459 HALZ PF02183.13 g115498.t1 - 0.013 15.2 8.1 0.06 13 0.2 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:520704-521324 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~520704-521324 DUF3932 PF13068.1 g18970.t1 - 0.013 15.6 0.4 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3932) | Ref_seq=scaffold560_contigs=4, transcript_loc=scaffold560_contigs=4:171128-171328 Augustus predicted protein sequence Tobacco scaffold560_contigs=4~171128-171328 Ten1 PF12658.2 g72885.t1 - 0.1 12.3 0.1 0.13 12 0.1 1 1 0 0 1 1 1 0 Telomere capping, CST complex subunit | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:82765-84434 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~82765-84434 Sugar_tr PF00083.19 g36783.t1 - 0.061 11.8 0.1 0.062 11.8 0.1 1 1 0 0 1 1 1 0 Sugar (and other) transporter | Ref_seq=scaffold899_contigs=2, transcript_loc=scaffold899_contigs=2:19931-20158 Augustus predicted protein sequence Tobacco scaffold899_contigs=2~19931-20158 Pcc1 PF09341.5 g120806.t1 - 0.0051 16.8 0.2 0.0093 15.9 0.1 1.3 1 0 0 1 1 1 1 Transcription factor Pcc1 | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:215538-216095 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~215538-216095 HemY_N PF07219.8 g6094.t1 - 0.1 12.1 1.8 0.14 11.6 1.2 1.2 1 0 0 1 1 1 0 HemY protein N-terminus | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:33701-33997 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~33701-33997 DUF1539 PF07560.6 g70535.t1 - 0.0091 15.8 0.1 0.027 14.3 0.1 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1539) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:285548-286483 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~285548-286483 IGPD PF00475.13 g120242.t1 - 0.051 13.4 0 0.055 13.3 0 1.1 1 0 0 1 1 1 0 Imidazoleglycerol-phosphate dehydratase | Ref_seq=scaffold2721_contigs=4, transcript_loc=scaffold2721_contigs=4:111377-111664 Augustus predicted protein sequence Tobacco scaffold2721_contigs=4~111377-111664 DUF2763 PF10961.3 g1914.t1 - 0.21 12 1.3 0.24 11.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2763) | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:16190-16774 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~16190-16774 Defensin_beta PF00711.14 g94991.t1 - 0.16 11.9 1.4 0.24 11.3 0.9 1.2 1 0 0 1 1 1 0 Beta defensin | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:55733-56017 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~55733-56017 DB PF01682.14 g121111.t1 - 0.78 9.8 3.3 1.2 9.1 2.3 1.3 1 0 0 1 1 1 0 DB module | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:394409-396285 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~394409-396285 CI-B14_5a PF07347.7 g88201.t1 - 0.083 12.6 0 0.19 11.5 0 1.6 2 0 0 2 2 2 0 NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:357664-358293 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~357664-358293 DUF4607 PF15380.1 g69195.t1 - 0.044 13.2 0 0.055 12.9 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4607) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:652435-654401 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~652435-654401 ING PF12998.2 g70782.t1 - 0.0038 17.4 0.1 0.0043 17.3 0 1.2 1 0 0 1 1 1 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:160323-160562 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~160323-160562 SARG PF15385.1 g68972.t1 - 0.43 9.8 18.5 0.48 9.7 12.8 1 1 0 0 1 1 1 0 Specifically androgen-regulated gene protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:228957-229481 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~228957-229481 DUF874 PF05917.6 g108223.t1 - 0.0061 15.4 0 0.0082 15 0 1.2 1 0 0 1 1 1 1 Helicobacter pylori protein of unknown function (DUF874) | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:934001-934736 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~934001-934736 Peptidase_C48 PF02902.14 g25228.t1 - 0.0027 17.3 0 0.0031 17.1 0 1.2 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold690_contigs=9, transcript_loc=scaffold690_contigs=9:159081-161422 Augustus predicted protein sequence Tobacco scaffold690_contigs=9~159081-161422 Toxin_25 PF08095.6 g37478.t1 - 0.043 13.5 0.3 0.078 12.7 0.2 1.4 1 0 0 1 1 1 0 Hefutoxin family | Ref_seq=scaffold927_contigs=11, transcript_loc=scaffold927_contigs=11:39584-40334 Augustus predicted protein sequence Tobacco scaffold927_contigs=11~39584-40334 MC1 PF05854.6 g82064.t1 - 0.024 14.6 0.1 0.032 14.1 0.1 1.2 1 0 0 1 1 1 0 Non-histone chromosomal protein MC1 | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:600723-602974 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~600723-602974 Phostensin_N PF13916.1 g15240.t1 - 0.028 14.4 0.1 0.035 14 0.1 1.3 1 0 0 1 1 1 0 PP1-regulatory protein, Phostensin N-terminal | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:288322-289079 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~288322-289079 HEV_ORF1 PF02444.11 g98696.t1 - 1.5 9 4.2 2.4 8.3 0.1 2.6 1 1 1 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:21445-22613 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~21445-22613 HALZ PF02183.13 g104751.t1 - 0.00056 19.5 9.1 0.058 13.1 2 2.7 2 1 0 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:179268-180079 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~179268-180079 DUF547 PF04784.9 g81323.t1 - 0.07 13 0 0.082 12.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF547 | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:5728-6093 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~5728-6093 Retrotrans_gag PF03732.12 g82247.t1 - 0.00022 21.2 0.1 0.0022 18 0 2.1 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:32350-33324 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~32350-33324 DUF2694 PF10904.3 g59219.t1 - 0.0097 15.8 0.1 0.014 15.4 0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2694) | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:3793-4305 Augustus predicted protein sequence Tobacco scaffold1285_contigs=4~3793-4305 DUF572 PF04502.8 g43916.t1 - 0.041 13.1 15.5 0.054 12.6 10.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:343012-343697 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~343012-343697 Transgly_assoc PF04226.8 g55955.t1 - 0.073 13.1 0.5 0.13 12.3 0.4 1.4 1 0 0 1 1 1 0 Transglycosylase associated protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:221194-221403 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~221194-221403 RVT_3 PF13456.1 g15902.t1 - 0.00000062 29.1 0 0.00000088 28.6 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold506_contigs=3, transcript_loc=scaffold506_contigs=3:42791-43722 Augustus predicted protein sequence Tobacco scaffold506_contigs=3~42791-43722 Remorin_C PF03763.8 g28458.t1 - 1 8.9 23.2 1.3 8.6 16.1 1.2 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:148990-149259 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~148990-149259 Trypan_PARP PF05887.6 g112092.t1 - 6.6 6.5 17.8 7.6 6.3 3.7 2.1 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:141912-142412 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~141912-142412 PulG PF11773.3 g81332.t1 - 0.044 13.5 0.5 4.4 7.1 0.1 2.4 1 1 1 2 2 2 0 Type II secretory pathway pseudopilin | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:30810-31338 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~30810-31338 RhoGEF PF00621.15 g13988.t1 - 0.000048 23.3 6.6 0.077 12.8 0.2 2.6 1 1 1 2 2 2 2 RhoGEF domain | Ref_seq=scaffold457_contigs=12, transcript_loc=scaffold457_contigs=12:17493-18877 Augustus predicted protein sequence Tobacco scaffold457_contigs=12~17493-18877 DUF4453 PF14627.1 g102553.t1 - 0.013 15.6 0.3 5.2 7.2 0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4453) | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:53356-54371 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~53356-54371 DUF1534 PF07551.6 g83972.t1 - 0.01 15.3 0.3 0.021 14.3 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1534) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:207381-208020 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~207381-208020 WHIM2 PF15613.1 g42284.t1 - 0.014 15.2 0.1 0.041 13.8 0 1.8 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 2 | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:355680-356108 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~355680-356108 DUF4152 PF13680.1 g95656.t1 - 0.03 13.3 0 0.033 13.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4152) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:33066-33341 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~33066-33341 Herpes_DNAp_acc PF04929.7 g1737.t1 - 3.5 6.4 5.5 4 6.3 3.8 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:50100-50453 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~50100-50453 DUF1863 PF08937.6 g42615.t1 - 0.12 12.4 0.2 0.3 11.1 0 1.7 2 0 0 2 2 2 0 MTH538 TIR-like domain (DUF1863) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:171249-171629 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~171249-171629 gag_pre-integrs PF13976.1 g41005.t1 - 0.00016 21.2 0.1 0.00029 20.3 0.1 1.4 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:390323-391432 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~390323-391432 GRP PF07172.6 g3221.t1 - 0.0057 17.1 0.1 0.0075 16.7 0.1 1.2 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:44388-44621 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~44388-44621 ATHILA PF03078.10 g82800.t1 - 1.6E-010 40.2 0.1 1.8E-010 40 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:94466-94966 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~94466-94966 RVT_3 PF13456.1 g111525.t1 - 6.3E-011 41.9 0 8.1E-011 41.5 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:854351-854647 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~854351-854647 UBN2 PF14223.1 g107195.t1 - 0.038 13.7 0.8 0.11 12.2 0.1 2.2 2 1 1 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:877830-878928 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~877830-878928 Trypan_PARP PF05887.6 g69156.t1 - 6.4 6.5 11.5 7 6.4 8 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:564916-565198 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~564916-565198 zf-H2C2_5 PF13909.1 g58017.t1 - 0.43 10.9 0 0.43 10.9 0 2.5 3 0 0 3 3 3 0 C2H2-type zinc-finger domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:142526-145024 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~142526-145024 HrpJ PF07201.6 g106498.t1 - 0.085 12.8 1.2 0.13 12.2 0.4 1.6 2 0 0 2 2 2 0 HrpJ-like domain | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:81437-82951 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~81437-82951 CppA_C PF14507.1 g10292.t1 - 0.12 12.6 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 CppA C-terminal | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:11988-12242 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~11988-12242 MraZ PF02381.13 g62577.t1 - 0.12 12.1 0 0.2 11.3 0 1.3 1 0 0 1 1 1 0 MraZ protein | Ref_seq=scaffold1351_contigs=1, transcript_loc=scaffold1351_contigs=1:122752-123352 Augustus predicted protein sequence Tobacco scaffold1351_contigs=1~122752-123352 gag-asp_proteas PF13975.1 g8669.t1 - 0.026 14.3 0 0.064 13 0 1.7 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold342_contigs=3, transcript_loc=scaffold342_contigs=3:3010-4097 Augustus predicted protein sequence Tobacco scaffold342_contigs=3~3010-4097 EBV-NA1 PF02905.9 g75116.t1 - 0.0051 16.3 0.1 0.0053 16.2 0.1 1.1 1 0 0 1 1 1 1 Epstein Barr virus nuclear antigen-1, DNA-binding domain | Ref_seq=scaffold1567_contigs=2, transcript_loc=scaffold1567_contigs=2:29427-29645 Augustus predicted protein sequence Tobacco scaffold1567_contigs=2~29427-29645 EF-hand_9 PF14658.1 g37199.t1 - 0.027 14.3 0.1 0.063 13.1 0 1.6 1 0 0 1 1 1 0 EF-hand domain | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:27365-27763 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~27365-27763 DUF365 PF04033.7 g109949.t1 - 0.12 12.3 0.1 3.2 7.7 0 2 1 1 0 2 2 2 0 Domain of unknown function (DUF365) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:8108-10260 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~8108-10260 AT_hook PF02178.14 g116010.t1 - 0.57 10 8.9 2 8.3 6.2 2 1 0 0 1 1 1 0 AT hook motif | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:390470-391150 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~390470-391150 PKI PF02827.11 g101592.t1 - 0.019 15 0.1 0.056 13.5 0 1.8 2 0 0 2 2 2 0 cAMP-dependent protein kinase inhibitor | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:377891-378341 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~377891-378341 Stm1_N PF09598.5 g76167.t1 - 0.9 10.2 4.9 1.2 9.9 3.4 1.3 1 0 0 1 1 1 0 Stm1 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:151500-151763 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~151500-151763 Crl PF07417.7 g75776.t1 - 0.085 12.5 0.1 0.14 11.8 0.1 1.4 1 1 0 1 1 1 0 Transcriptional regulator Crl | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:6759-7235 Augustus predicted protein sequence Tobacco scaffold1596_contigs=1~6759-7235 Fim-adh_lectin PF09222.5 g85559.t1 - 0.042 13.1 0.3 0.045 13 0.2 1 1 0 0 1 1 1 0 Fimbrial adhesin F17-AG, lectin domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:54453-55201 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~54453-55201 Bac_globin PF01152.16 g12341.t1 - 0.052 13.5 0.2 7.1 6.6 0.1 2.1 2 0 0 2 2 2 0 Bacterial-like globin | Ref_seq=scaffold425_contigs=5, transcript_loc=scaffold425_contigs=5:96557-97074 Augustus predicted protein sequence Tobacco scaffold425_contigs=5~96557-97074 DUF904 PF06005.7 g28812.t1 - 0.023 14.9 5.5 0.033 14.4 3.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:341483-342445 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~341483-342445 Peptidase_S49_N PF08496.5 g92194.t1 - 2.6 7.8 5.7 4 7.2 3.9 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:190376-191191 Augustus predicted protein sequence Tobacco scaffold1984_contigs=7~190376-191191 DUF1347 PF07079.6 g75775.t1 - 0.02 13 0.1 0.026 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:6110-6634 Augustus predicted protein sequence Tobacco scaffold1596_contigs=1~6110-6634 MelC1 PF06236.6 g104765.t1 - 0.059 13.3 0.1 0.089 12.7 0.1 1.3 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:207185-207760 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~207185-207760 Synaptonemal_3 PF15191.1 g2479.t1 - 0.0046 16.6 1 0.13 12 0 2.1 1 1 1 2 2 2 2 Synaptonemal complex central element protein 3 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:99265-99744 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~99265-99744 Filaggrin PF03516.8 g23111.t1 - 7.6 7 8.5 0.22 12 0.8 2.2 2 1 0 2 2 2 0 Filaggrin | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:135059-137803 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~135059-137803 DinI PF06183.8 g91035.t1 - 0.025 14.5 0 0.035 14.1 0 1.3 1 0 0 1 1 1 0 DinI-like family | Ref_seq=scaffold1969_contigs=2, transcript_loc=scaffold1969_contigs=2:13150-14760 Augustus predicted protein sequence Tobacco scaffold1969_contigs=2~13150-14760 RapA_C PF12137.3 g3323.t1 - 0.027 13.3 2.9 0.74 8.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase recycling family C-terminal | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:23052-24225 Augustus predicted protein sequence Tobacco scaffold230_contigs=2~23052-24225 YdjO PF14169.1 g93195.t1 - 0.12 11.8 0 0.19 11.1 0 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:45113-45478 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~45113-45478 DUF782 PF05614.6 g61532.t1 - 0.12 12.5 0 0.18 11.9 0 1.3 1 0 0 1 1 1 0 Circovirus protein of unknown function (DUF782) | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:49424-51292 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~49424-51292 Tymo_45kd_70kd PF03251.8 g52595.t1 - 0.067 11.8 0.2 0.085 11.5 0.1 1.1 1 0 0 1 1 1 0 Tymovirus 45/70Kd protein | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:261186-261841 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~261186-261841 MULE PF10551.4 g68196.t1 - 0.000032 24 0.1 0.000056 23.2 0.1 1.4 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:336412-336660 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~336412-336660 YdjO PF14169.1 g109818.t1 - 0.026 13.9 0 0.047 13.1 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:234416-234826 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~234416-234826 Hanta_G2 PF01561.11 g16437.t1 - 0.0084 14.5 0 0.0094 14.3 0 1.1 1 0 0 1 1 1 1 Hantavirus glycoprotein G2 | Ref_seq=scaffold515_contigs=6, transcript_loc=scaffold515_contigs=6:131308-131848 Augustus predicted protein sequence Tobacco scaffold515_contigs=6~131308-131848 GDE_N PF12439.3 g106423.t1 - 0.037 13.2 1 0.06 12.5 0.7 1.3 1 0 0 1 1 1 0 Glycogen debranching enzyme N terminal | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:168114-169399 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~168114-169399 SAG PF04092.8 g129910.t1 - 0.057 13.8 0.1 0.07 13.5 0.1 1.1 1 0 0 1 1 1 0 SRS domain | Ref_seq=scaffold3192_contigs=1, transcript_loc=scaffold3192_contigs=1:3339-3617 Augustus predicted protein sequence Tobacco scaffold3192_contigs=1~3339-3617 DUF4413 PF14372.1 g12172.t1 - 0.0000011 28.5 0 0.0000015 28 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:205263-205574 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~205263-205574 Ph1570 PF09638.5 g51990.t1 - 0.0023 17.7 0.1 0.003 17.3 0.1 1.2 1 0 0 1 1 1 1 Ph1570 protein | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:92466-92786 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~92466-92786 Cytotoxic PF09000.5 g115932.t1 - 0.1 12.5 1.9 0.13 12.2 1.3 1.2 1 0 0 1 1 1 0 Cytotoxic | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:283198-283532 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~283198-283532 FliD_N PF02465.13 g83499.t1 - 0.039 14.3 0.7 0.056 13.8 0.5 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:114020-114613 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~114020-114613 NAM-associated PF14303.1 g111873.t1 - 0.27 11.5 11.3 0.33 11.2 7.8 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2596_contigs=6, transcript_loc=scaffold2596_contigs=6:35304-35630 Augustus predicted protein sequence Tobacco scaffold2596_contigs=6~35304-35630 DUF177 PF02620.12 g27432.t1 - 0.064 13.2 0.2 0.064 13.2 0.1 2 2 0 0 2 2 2 0 Uncharacterized ACR, COG1399 | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:87177-87620 Augustus predicted protein sequence Tobacco scaffold725_contigs=8~87177-87620 Vps5 PF09325.5 g41789.t1 - 0.0022 17.3 0.3 0.0044 16.3 0.2 1.4 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:6295-8753 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~6295-8753 DUF3543 PF12063.3 g95835.t1 - 0.02 14.1 0.1 0.023 13.9 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3543) | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:60561-60815 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~60561-60815 Hemopexin PF00045.14 g30918.t1 - 0.0068 16.1 1.4 0.22 11.2 0.1 3 3 0 0 3 3 3 1 Hemopexin | Ref_seq=scaffold782_contigs=17, transcript_loc=scaffold782_contigs=17:47156-47966 Augustus predicted protein sequence Tobacco scaffold782_contigs=17~47156-47966 DUF3405 PF11885.3 g13992.t1 - 0.072 11.3 0 0.077 11.2 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3405) | Ref_seq=scaffold457_contigs=12, transcript_loc=scaffold457_contigs=12:35334-35969 Augustus predicted protein sequence Tobacco scaffold457_contigs=12~35334-35969 RNA_polI_A34 PF08208.6 g75433.t1 - 0.1 12.2 0.2 0.097 12.3 0.1 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:391059-391259 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~391059-391259 Prim_Zn_Ribbon PF08273.7 g82860.t1 - 0.079 13 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:89911-90219 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~89911-90219 MULE PF10551.4 g58589.t1 - 0.0012 18.9 0.1 0.0024 17.9 0.1 1.5 2 0 0 2 2 2 1 MULE transposase domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:243293-244172 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~243293-244172 ATHILA PF03078.10 g101336.t1 - 1.7E-009 36.8 0.1 3.7E-009 35.7 0.1 1.5 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:55622-58761 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~55622-58761 COX4 PF02936.9 g644.t1 - 0.12 12 0.1 0.16 11.7 0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV | Ref_seq=scaffold37_contigs=1, transcript_loc=scaffold37_contigs=1:9334-9678 Augustus predicted protein sequence Tobacco scaffold37_contigs=1~9334-9678 DUF4118 PF13493.1 g80138.t1 - 0.031 14.4 0.1 0.041 14 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:15968-16369 Augustus predicted protein sequence Tobacco scaffold1710_contigs=11~15968-16369 Corona_M PF01635.13 g61702.t1 - 0.094 11.6 0 0.11 11.4 0 1 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:82538-82822 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~82538-82822 Ig_J_chain PF15097.1 g93514.t1 - 0.1 12.1 0 0.11 12 0 1.1 1 0 0 1 1 1 0 Immunoglobulin J chain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:18527-18766 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~18527-18766 Hat1_N PF10394.4 g23782.t1 - 0.2 11.6 3 1.5 8.8 2.1 2 1 1 0 1 1 1 0 Histone acetyl transferase HAT1 N-terminus | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:58782-61732 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~58782-61732 DUF4070 PF13282.1 g124045.t1 - 0.074 12.5 0.1 0.085 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4070) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1229337-1229621 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1229337-1229621 zf-CCHC PF00098.18 g37037.t1 - 0.18 11.7 6.7 0.28 11.1 4.7 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:187242-187496 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~187242-187496 GCIP PF13324.1 g104369.t1 - 0.0029 16.8 1 0.0083 15.3 0.9 1.7 2 0 0 2 2 2 1 Grap2 and cyclin-D-interacting | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:657493-659192 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~657493-659192 GED PF02212.13 g2613.t1 - 0.12 12.3 0.9 0.18 11.6 0.6 1.3 1 0 0 1 1 1 0 Dynamin GTPase effector domain | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:22688-24494 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~22688-24494 DNA_pol_viral_N PF00242.12 g104312.t1 - 0.028 13.4 1.3 0.033 13.2 0.9 1 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:472732-473118 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~472732-473118 ATHILA PF03078.10 g7621.t1 - 0.0036 15.9 0 0.0056 15.3 0 1.3 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:483021-483482 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~483021-483482 Pinin_SDK_memA PF04696.8 g91499.t1 - 0.062 12.8 0.7 0.24 11 0 1.9 2 0 0 2 2 2 0 pinin/SDK/memA/ protein conserved region | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:125079-125627 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~125079-125627 LRR_6 PF13516.1 g30216.t1 - 0.87 9.8 2.9 14 6.1 0.2 2.7 2 0 0 2 2 2 0 Leucine Rich repeat | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:50315-51245 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~50315-51245 UBN2 PF14223.1 g96898.t1 - 0.11 12.2 0 0.16 11.7 0 1.3 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:55684-56032 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~55684-56032 IBV_3A PF03617.8 g59070.t1 - 0.0052 16.5 1.5 0.0079 15.9 1 1.4 1 1 0 1 1 1 1 IBV 3A protein | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:184390-184623 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~184390-184623 Ndc1_Nup PF09531.5 g15882.t1 - 0.071 11.5 1 0.085 11.2 0.7 1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup | Ref_seq=scaffold505_contigs=11, transcript_loc=scaffold505_contigs=11:253382-253807 Augustus predicted protein sequence Tobacco scaffold505_contigs=11~253382-253807 DUF3073 PF11273.3 g119231.t1 - 0.25 11.8 1.5 5.4 7.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:222817-223449 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~222817-223449 Herpes_BLRF2 PF05812.7 g124812.t1 - 0.63 9.8 5.2 9 6.1 0.5 2.4 1 1 1 2 2 2 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:202493-203155 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~202493-203155 ATHILA PF03078.10 g3458.t1 - 2.9E-011 42.6 0.4 0.000005 25.3 0 3 2 1 1 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:101406-102081 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~101406-102081 DUF3642 PF12182.3 g104345.t1 - 0.12 12.8 0.5 0.18 12.2 0.4 1.3 1 0 0 1 1 1 0 Bacterial lipoprotein | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:588145-588378 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~588145-588378 UBN2 PF14223.1 g13115.t1 - 0.046 13.4 0 0.058 13.1 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:154147-154389 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~154147-154389 MamL-1 PF09596.5 g103492.t1 - 0.27 11 2.9 0.65 9.8 0 2.1 2 0 0 2 2 2 0 MamL-1 domain | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:782389-782694 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~782389-782694 zf-CGNR PF11706.3 g125050.t1 - 0.83 9.2 6.7 2.8 7.4 0.1 2.7 3 0 0 3 3 3 0 CGNR zinc finger | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:24664-25248 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~24664-25248 ABC_tran_2 PF12848.2 g64337.t1 - 0.34 10.7 2.5 0.41 10.5 1.7 1.2 1 0 0 1 1 1 0 ABC transporter | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:45150-45350 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~45150-45350 HALZ PF02183.13 g80587.t1 - 0.14 11.8 5.4 0.11 12.2 1.5 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:92934-93473 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~92934-93473 FoP_duplication PF13865.1 g7699.t1 - 0.81 10.1 6.8 1.6 9.2 4.7 1.4 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:20737-21234 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~20737-21234 Mei5 PF10376.4 g10244.t1 - 0.0019 17.7 0.2 0.0024 17.4 0.1 1.1 1 0 0 1 1 1 1 Double-strand recombination repair protein | Ref_seq=scaffold385_contigs=8, transcript_loc=scaffold385_contigs=8:40439-41411 Augustus predicted protein sequence Tobacco scaffold385_contigs=8~40439-41411 DBD_Tnp_Mut PF03108.10 g13885.t1 - 0.0000027 26.8 0.5 0.000004 26.3 0.3 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:316692-316958 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~316692-316958 IL7 PF01415.11 g55620.t1 - 0.011 15.3 0.1 0.013 15.1 0.1 1.1 1 0 0 1 1 1 0 Interleukin 7/9 family | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:76365-76607 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~76365-76607 DUF4296 PF14129.1 g81775.t1 - 0.035 14.2 0.2 0.05 13.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:83664-84571 Augustus predicted protein sequence Tobacco scaffold1736_contigs=8~83664-84571 Peptidase_C3 PF00548.15 g117461.t1 - 0.013 15.3 0 0.016 15 0 1.2 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:202413-202691 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~202413-202691 DUF2207 PF09972.4 g122996.t1 - 0.12 10.9 0.1 0.16 10.4 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) | Ref_seq=scaffold2751_contigs=9, transcript_loc=scaffold2751_contigs=9:47713-48333 Augustus predicted protein sequence Tobacco scaffold2751_contigs=9~47713-48333 CCDC66 PF15236.1 g108939.t1 - 0.0008 19 7 0.00087 18.9 4.8 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 66 | Ref_seq=scaffold2458_contigs=3, transcript_loc=scaffold2458_contigs=3:23682-23975 Augustus predicted protein sequence Tobacco scaffold2458_contigs=3~23682-23975 DUF4139 PF13598.1 g9011.t1 - 0.63 9.2 8.3 0.78 8.9 5.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:63531-64037 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~63531-64037 PKK PF12474.3 g40972.t1 - 0.029 14.1 0.9 0.033 13.9 0.6 1.1 1 0 0 1 1 1 0 Polo kinase kinase | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:313233-313463 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~313233-313463 Pox_ATPase-GT PF10640.4 g100421.t1 - 0.05 12.3 0.1 0.051 12.3 0.1 1.1 1 0 0 1 1 1 0 mRNA capping enzyme N-terminal, ATPase and guanylyltransferase | Ref_seq=scaffold2188_contigs=14, transcript_loc=scaffold2188_contigs=14:370711-370974 Augustus predicted protein sequence Tobacco scaffold2188_contigs=14~370711-370974 Sec16_N PF12935.2 g84500.t1 - 0.074 12.9 1.1 0.16 11.8 0.3 1.8 1 1 1 2 2 2 0 Vesicle coat trafficking protein Sec16 N-terminus | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:6774-7280 Augustus predicted protein sequence Tobacco scaffold1823_contigs=11~6774-7280 RhoGAP PF00620.22 g36151.t1 - 0.01 15.4 0.3 0.15 11.6 0 2 1 1 0 2 2 2 0 RhoGAP domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:373855-374614 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~373855-374614 STAT2_C PF12188.3 g91372.t1 - 0.073 12.8 0 6.1 6.7 0 2.3 2 0 0 2 2 2 0 Signal transducer and activator of transcription 2 C terminal | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:32340-34646 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~32340-34646 Trypan_PARP PF05887.6 g5862.t1 - 3 7.6 19 3.6 7.4 13.2 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:104157-104381 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~104157-104381 ESPR PF13018.1 g118578.t1 - 1.9 8.2 4.9 52 3.6 0.1 3.2 3 0 0 3 3 3 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:13655-13900 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~13655-13900 zf-RVT PF13966.1 g24993.t1 - 0.00018 21.7 1 0.00031 21 0.7 1.4 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:5574-6030 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~5574-6030 DUF2360 PF10152.4 g67087.t1 - 0.4 10.9 2.9 0.76 10 1.1 1.8 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:504536-504820 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~504536-504820 IF2_assoc PF08364.6 g96926.t1 - 0.13 12.2 0.7 0.37 10.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:128569-129101 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~128569-129101 MerR_2 PF13591.1 g106756.t1 - 0.0006 19.3 0 0.00083 18.9 0 1.2 1 0 0 1 1 1 1 MerR HTH family regulatory protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:521561-521830 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~521561-521830 DUF3267 PF11667.3 g61384.t1 - 0.11 12.7 0.7 0.13 12.4 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3267) | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:118263-119103 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~118263-119103 SSV1_ORF_D-335 PF07935.6 g31759.t1 - 0.047 13.4 0 0.047 13.4 0 1.1 1 0 0 1 1 1 0 ORF D-335-like protein | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:227564-227821 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~227564-227821 Transposase_28 PF04195.7 g41079.t1 - 0.0025 17.1 0 0.0063 15.8 0 1.6 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:626951-631131 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~626951-631131 MbeD_MobD PF04899.7 g27465.t1 - 0.028 14.3 1.6 0.087 12.7 0.4 2 1 1 1 2 2 2 0 MbeD/MobD like | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:186176-186686 Augustus predicted protein sequence Tobacco scaffold725_contigs=8~186176-186686 DUF904 PF06005.7 g30597.t1 - 0.15 12.3 1.7 0.23 11.7 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:420-1529 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~420-1529 MCC-bdg_PDZ PF10506.4 g29772.t1 - 0.015 15.1 5.6 0.035 13.9 3.9 1.6 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:81738-82334 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~81738-82334 Borealin PF10512.4 g106808.t1 - 0.005 16.7 0.5 0.0094 15.8 0.4 1.5 1 0 0 1 1 1 1 Cell division cycle-associated protein 8 | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:622706-623673 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~622706-623673 GCS PF03074.11 g33670.t1 - 0.018 14 0.2 0.021 13.9 0.1 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:335707-336072 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~335707-336072 DBD_Tnp_Mut PF03108.10 g105294.t1 - 0.000058 22.5 0 0.000094 21.9 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:235929-236873 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~235929-236873 zf-CCHC_3 PF13917.1 g114250.t1 - 0.15 11.8 0 0.32 10.7 0 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:363619-363995 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~363619-363995 Cwf_Cwc_15 PF04889.7 g35698.t1 - 0.067 12.8 9.1 0.09 12.4 6.3 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:137070-137696 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~137070-137696 DUF1985 PF09331.6 g18111.t1 - 2.6E-009 37 0 0.002 17.9 0 2 1 1 1 2 2 2 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold545_contigs=3, transcript_loc=scaffold545_contigs=3:1-668 Augustus predicted protein sequence Tobacco scaffold545_contigs=3~1-668 DUF3122 PF11320.3 g86765.t1 - 0.0047 16.8 0 3.8 7.4 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3122) | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:81782-82570 Augustus predicted protein sequence Tobacco scaffold1861_contigs=7~81782-82570 NADH-u_ox-rdase PF10785.4 g96529.t1 - 0.18 12 1.3 8 6.7 0 2.1 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit | Ref_seq=scaffold2111_contigs=2, transcript_loc=scaffold2111_contigs=2:5344-5821 Augustus predicted protein sequence Tobacco scaffold2111_contigs=2~5344-5821 NPCBM_assoc PF10633.4 g9617.t1 - 0.036 14.1 0 0.049 13.6 0 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:169091-169321 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~169091-169321 Tetraspannin PF00335.15 g28862.t1 - 0.13 11.4 1.6 0.14 11.3 1.1 1 1 0 0 1 1 1 0 Tetraspanin family | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:491041-491346 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~491041-491346 zf-RING_UBOX PF13445.1 g107809.t1 - 0.0026 17.4 0.6 0.95 9.2 0.1 2.3 2 0 0 2 2 2 2 RING-type zinc-finger | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:155590-156357 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~155590-156357 zf-CCHC PF00098.18 g63304.t1 - 0.4 10.7 5.3 0.4 10.6 1.1 2.5 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:173737-174063 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~173737-174063 QueC PF06508.8 g127245.t1 - 0.74 9 5.4 0.98 8.6 3.7 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:42140-43657 Augustus predicted protein sequence Tobacco scaffold2817_contigs=1~42140-43657 ATHILA PF03078.10 g20075.t1 - 0.0000015 27.1 0 0.000015 23.8 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:48154-48990 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~48154-48990 DUF2694 PF10904.3 g20612.t1 - 0.0081 16.1 0 0.012 15.5 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2694) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:548533-549006 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~548533-549006 EAP30 PF04157.11 g116711.t1 - 0.13 11.4 0 0.13 11.3 0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:199308-200731 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~199308-200731 Tna_leader PF08053.6 g120201.t1 - 0.88 9 10.5 5.5 6.4 0 4.2 4 1 0 4 4 4 0 Tryptophanese operon leader peptide | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:256715-257227 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~256715-257227 Paxillin PF03535.8 g104350.t1 - 0.01 15.6 0.5 0.015 15 0.3 1.2 1 0 0 1 1 1 0 Paxillin family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:612326-612964 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~612326-612964 AA_kinase PF00696.23 g72589.t1 - 0.11 12 0.1 0.18 11.3 0 1.3 1 1 0 1 1 1 0 Amino acid kinase family | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:122021-122311 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~122021-122311 SHOCT PF09851.4 g78738.t1 - 0.097 12.1 3 0.18 11.3 2.1 1.5 1 0 0 1 1 1 0 Short C-terminal domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:68465-70049 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~68465-70049 QLQ PF08880.6 g66030.t1 - 0.55 9.6 0.2 0.55 9.6 0.1 2.2 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:174499-174711 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~174499-174711 DUF1580 PF07618.6 g69528.t1 - 0.099 12 0.1 0.28 10.5 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1580) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:361620-362297 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~361620-362297 ATHILA PF03078.10 g12842.t1 - 0.0089 14.6 0.3 0.92 8 0.1 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:25634-27562 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~25634-27562 MAM1 PF10434.4 g110188.t1 - 0.0042 16.3 1.9 0.0054 15.9 1.3 1.2 1 0 0 1 1 1 1 Monopolin complex protein MAM1 | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:33204-33593 Augustus predicted protein sequence Tobacco scaffold2530_contigs=9~33204-33593 GVQW PF13900.1 g27981.t1 - 6 6.9 6.4 28 4.7 1.5 2.6 2 0 0 2 2 2 0 Putative binding domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:697333-700031 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~697333-700031 VGCC_beta4Aa_N PF12052.3 g42685.t1 - 0.096 12.5 0.9 0.14 11.9 0.6 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:340853-341353 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~340853-341353 FH2 PF02181.18 g26859.t1 - 0.011 14.6 0 0.017 13.9 0 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:420380-421129 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~420380-421129 Apolipoprotein PF01442.13 g37757.t1 - 0.018 14.5 6.4 0.021 14.3 4.5 1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:338559-338801 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~338559-338801 PhaP_Bmeg PF09602.5 g68413.t1 - 0.027 14.2 0.6 0.031 14 0.4 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:64281-64568 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~64281-64568 PRCC PF10253.4 g63970.t1 - 0.092 13.4 0.1 0.2 12.3 0 1.6 1 1 1 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:41130-41492 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~41130-41492 RILP PF11461.3 g40671.t1 - 0.016 15.3 2.7 1.2 9.3 0.4 3 2 0 0 2 2 2 0 Rab interacting lysosomal protein | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:245488-246396 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~245488-246396 Cwf_Cwc_15 PF04889.7 g82082.t1 - 3.2 7.3 8.9 3.3 7.3 6.2 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:639520-639848 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~639520-639848 DUF2275 PF10039.4 g103873.t1 - 0.071 13 0 0.1 12.4 0 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2275) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:270186-270791 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~270186-270791 DapH_N PF08503.5 g15968.t1 - 0.06 13.4 0 0.24 11.5 0 1.8 2 0 0 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:205717-207471 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~205717-207471 UBN2_2 PF14227.1 g29311.t1 - 0.0089 15.5 0.6 0.022 14.3 0.1 1.7 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:220181-220546 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~220181-220546 CaM-KIIN PF15170.1 g70115.t1 - 0.12 12.3 0 0.22 11.5 0 1.4 1 0 0 1 1 1 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:264520-265296 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~264520-265296 FA_desaturase PF00487.19 g48000.t1 - 0.037 13.4 0.2 0.041 13.3 0.1 1 1 0 0 1 1 1 0 Fatty acid desaturase | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:385117-385431 Augustus predicted protein sequence Tobacco scaffold1103_contigs=14~385117-385431 GalP_UDP_transf PF01087.17 g56702.t1 - 0.096 12.7 0 0.096 12.7 0 1.2 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, N-terminal domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:690954-691250 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~690954-691250 Gag_spuma PF03276.9 g83550.t1 - 0.074 11.3 0.5 0.077 11.3 0.3 1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:72709-73017 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~72709-73017 DUF1985 PF09331.6 g89563.t1 - 0.018 14.8 3.1 0.27 11 0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1950_contigs=8, transcript_loc=scaffold1950_contigs=8:28353-33088 Augustus predicted protein sequence Tobacco scaffold1950_contigs=8~28353-33088 Ala_racemase_N PF01168.15 g75734.t1 - 0.0037 16.8 0.7 0.015 14.8 0.4 1.8 2 0 0 2 2 2 1 Alanine racemase, N-terminal domain | Ref_seq=scaffold1590_contigs=1, transcript_loc=scaffold1590_contigs=1:26373-28838 Augustus predicted protein sequence Tobacco scaffold1590_contigs=1~26373-28838 Phage_terminase PF10668.4 g91894.t1 - 0.023 14.4 0.3 0.031 14 0.2 1.2 1 0 0 1 1 1 0 Phage terminase small subunit | Ref_seq=scaffold1981_contigs=8, transcript_loc=scaffold1981_contigs=8:75019-75350 Augustus predicted protein sequence Tobacco scaffold1981_contigs=8~75019-75350 A1_Propeptide PF07966.7 g101000.t1 - 0.66 9.8 3.9 3.7 7.4 2 2.4 1 1 1 2 2 2 0 A1 Propeptide | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:7742-8513 Augustus predicted protein sequence Tobacco scaffold2207_contigs=13~7742-8513 PBP1_TM PF14812.1 g57733.t1 - 0.012 15.8 0.6 0.016 15.5 0.4 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1258_contigs=3, transcript_loc=scaffold1258_contigs=3:41458-42179 Augustus predicted protein sequence Tobacco scaffold1258_contigs=3~41458-42179 CCDC155 PF14662.1 g52069.t1 - 0.00055 19.6 2.7 0.00075 19.1 1.8 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:302137-303082 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~302137-303082 DUF2743 PF10899.3 g17241.t1 - 0.017 14.5 1 0.018 14.4 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:239054-240078 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~239054-240078 zf-AN1 PF01428.11 g68233.t1 - 0.11 12.3 0.5 11 5.9 0.1 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:436556-437786 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~436556-437786 Adeno_E3_CR1 PF02440.10 g110814.t1 - 0.13 11.7 0.4 3.5 7.1 0.1 2.1 1 1 1 2 2 2 0 Adenovirus E3 region protein CR1 | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:638470-640297 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~638470-640297 DUF3391 PF11871.3 g84878.t1 - 0.0044 17.2 0.1 0.0052 16.9 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3391) | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:110645-110908 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~110645-110908 Snurportin1 PF11538.3 g47972.t1 - 0.25 11.1 3.4 8.5 6.2 0 2.8 3 0 0 3 3 3 0 Snurportin1 | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:243359-245885 Augustus predicted protein sequence Tobacco scaffold1103_contigs=14~243359-245885 Vpu PF00558.14 g73396.t1 - 3.2 7.3 4.7 4.8 6.8 3.2 1.5 1 1 0 1 1 1 0 Vpu protein | Ref_seq=scaffold1540_contigs=16, transcript_loc=scaffold1540_contigs=16:6712-7122 Augustus predicted protein sequence Tobacco scaffold1540_contigs=16~6712-7122 Mito_fiss_reg PF05308.6 g73300.t1 - 0.13 11.5 4.3 0.13 11.6 3 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1536_contigs=31, transcript_loc=scaffold1536_contigs=31:112912-113157 Augustus predicted protein sequence Tobacco scaffold1536_contigs=31~112912-113157 Bac_GDH PF05088.7 g38861.t1 - 0.013 12.8 2.3 0.018 12.4 1.6 1.2 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:95679-97061 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~95679-97061 Lebercilin PF15619.1 g112008.t1 - 0.018 14.4 1.5 0.018 14.4 1.1 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:45791-46330 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~45791-46330 DREV PF05219.7 g111736.t1 - 0.031 13.1 0 7.1 5.4 0 2.2 1 1 0 2 2 2 0 DREV methyltransferase | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:88006-88843 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~88006-88843 Pox_A_type_inc PF04508.7 g44992.t1 - 0.0048 16.5 0.1 0.0081 15.8 0.1 1.4 1 0 0 1 1 1 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:171048-171978 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~171048-171978 ATHILA PF03078.10 g79956.t1 - 0.00088 17.9 0 0.00095 17.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:347394-347600 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~347394-347600 Tropomyosin PF00261.15 g56300.t1 - 0.13 11.3 0.1 0.15 11.1 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:405554-407691 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~405554-407691 DUF2750 PF11042.3 g15336.t1 - 0.022 14.7 0.7 0.051 13.6 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2750) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:61350-62483 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~61350-62483 CCDC155 PF14662.1 g37358.t1 - 0.011 15.3 0.4 0.011 15.3 0.3 1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:75644-75850 Augustus predicted protein sequence Tobacco scaffold924_contigs=4~75644-75850 zf-C4_ClpX PF06689.8 g49762.t1 - 0.019 14.4 0.1 0.038 13.5 0.1 1.5 1 0 0 1 1 1 0 ClpX C4-type zinc finger | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:97276-97944 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~97276-97944 APH_6_hur PF04655.9 g29523.t1 - 0.11 11.6 0.3 0.12 11.5 0.2 1.2 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:120626-120883 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~120626-120883 B3_4 PF03483.12 g69764.t1 - 0.028 13.8 0.1 0.042 13.3 0 1.2 1 0 0 1 1 1 0 B3/4 domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:92860-93108 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~92860-93108 DUF2636 PF11120.3 g1350.t1 - 0.0097 15.3 0 0.02 14.3 0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2636) | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:36585-38545 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~36585-38545 PMSI1 PF15322.1 g97353.t1 - 0.11 11.5 0.2 0.13 11.3 0.2 1 1 0 0 1 1 1 0 Protein missing in infertile sperm 1, putative | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:107612-107963 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~107612-107963 CobU PF02283.11 g128425.t1 - 0.064 12.6 0.2 0.076 12.4 0.1 1.2 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:29992-31418 Augustus predicted protein sequence Tobacco scaffold2867_contigs=1~29992-31418 Glycos_transf_3 PF00591.16 g65910.t1 - 0.00029 20.3 1.2 0.38 10.1 0.1 2.3 2 0 0 2 2 2 2 Glycosyl transferase family, a/b domain | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:48425-51820 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~48425-51820 SLAM PF06214.6 g66693.t1 - 0.065 13.1 0 0.1 12.5 0 1.2 1 0 0 1 1 1 0 Signaling lymphocytic activation molecule (SLAM) protein | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:419767-420506 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~419767-420506 Atrophin-1 PF03154.10 g8097.t1 - 0.22 9.6 1.1 0.22 9.6 0.7 1.1 1 0 0 1 1 1 0 Atrophin-1 family | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:27099-27593 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~27099-27593 LssY_C PF14067.1 g114339.t1 - 0.05 12.5 0 0.07 12.1 0 1.2 1 0 0 1 1 1 0 LssY C-terminus | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:39350-39787 Augustus predicted protein sequence Tobacco scaffold2646_contigs=41~39350-39787 Bacteriocin_II PF01721.13 g112242.t1 - 0.062 12.8 0.3 0.1 12.1 0.2 1.3 1 0 0 1 1 1 0 Class II bacteriocin | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:58034-58405 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~58034-58405 Trypan_PARP PF05887.6 g88771.t1 - 4.3 7.1 14.5 4.5 7 10 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:74995-75201 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~74995-75201 TerD PF02342.13 g48045.t1 - 0.12 11.6 0 0.14 11.5 0 1.1 1 0 0 1 1 1 0 TerD domain | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:24477-24686 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~24477-24686 Sigma70_ner PF04546.8 g109796.t1 - 0.0041 16.7 4 0.005 16.4 2.8 1.2 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:155454-155843 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~155454-155843 RNase_H2-Ydr279 PF09468.5 g82069.t1 - 0.091 11.9 6.6 0.11 11.7 4.5 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:617759-618043 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~617759-618043 Phage-tail_3 PF13550.1 g107491.t1 - 0.1 12.3 0 0.13 12 0 1.1 1 0 0 1 1 1 0 Putative phage tail protein | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:123640-125979 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~123640-125979 NAM-associated PF14303.1 g17428.t1 - 0.0043 17.3 1.3 0.0045 17.3 0.9 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:601545-601778 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~601545-601778 DUF4653 PF15546.1 g28501.t1 - 0.0095 15.2 0 0.011 15 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4653) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:22254-22733 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~22254-22733 POX PF07526.6 g44199.t1 - 0.033 14.4 0.3 0.042 14 0.2 1.2 1 0 0 1 1 1 0 Associated with HOX | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:207878-208607 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~207878-208607 Ribosomal_S25 PF03297.10 g89915.t1 - 0.37 10.8 2.9 0.73 9.9 2 1.5 1 0 0 1 1 1 0 S25 ribosomal protein | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:29486-29839 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~29486-29839 Toxin_57 PF15535.1 g55127.t1 - 0.08 13 0 1.6 8.7 0 2.2 2 0 0 2 2 2 0 Putative toxin 57 | Ref_seq=scaffold1214_contigs=4, transcript_loc=scaffold1214_contigs=4:116733-117161 Augustus predicted protein sequence Tobacco scaffold1214_contigs=4~116733-117161 Drf_FH1 PF06346.7 g69968.t1 - 0.053 13 0.6 0.062 12.8 0.4 1.2 1 0 0 1 1 1 0 Formin Homology Region 1 | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:1181-1582 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~1181-1582 FliD_N PF02465.13 g127320.t1 - 0.098 13 1.9 0.14 12.4 1.3 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus | Ref_seq=scaffold2819_contigs=1, transcript_loc=scaffold2819_contigs=1:51046-51429 Augustus predicted protein sequence Tobacco scaffold2819_contigs=1~51046-51429 Ribosomal_L15e PF00827.12 g45473.t1 - 0.015 14.8 0.6 0.027 13.9 0.4 1.4 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:506020-507210 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~506020-507210 pRN1_helical PF13010.1 g94122.t1 - 0.021 14.4 3 1.2 8.7 0.1 2.4 2 0 0 2 2 2 0 Primase helical domain | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:367356-368136 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~367356-368136 DUF3024 PF11225.3 g129280.t1 - 0.22 11.4 1.1 0.33 10.8 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3024) | Ref_seq=scaffold2935_contigs=1, transcript_loc=scaffold2935_contigs=1:8977-10657 Augustus predicted protein sequence Tobacco scaffold2935_contigs=1~8977-10657 MYT1 PF08474.6 g94380.t1 - 2 7.8 11.1 2.9 7.3 7.7 1.2 1 0 0 1 1 1 0 Myelin transcription factor 1 | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:769346-769714 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~769346-769714 DBD_Tnp_Mut PF03108.10 g126106.t1 - 0.0000082 25.3 0.2 0.000011 24.8 0.2 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2787_contigs=1, transcript_loc=scaffold2787_contigs=1:84448-85503 Augustus predicted protein sequence Tobacco scaffold2787_contigs=1~84448-85503 Choline_kinase PF01633.15 g115261.t1 - 0.016 14.8 0.1 0.022 14.3 0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:345170-345571 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~345170-345571 MerR-DNA-bind PF09278.6 g52982.t1 - 0.15 12.4 0 0.21 12 0 1.2 1 0 0 1 1 1 0 MerR, DNA binding | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:305485-306690 Augustus predicted protein sequence Tobacco scaffold1183_contigs=24~305485-306690 Sugarporin_N PF11471.3 g96266.t1 - 0.059 13 0 0.066 12.8 0 1.2 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:262850-263050 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~262850-263050 UBN2 PF14223.1 g77174.t1 - 0.037 13.8 3.1 0.062 13.1 0.1 2.5 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:50254-50905 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~50254-50905 TraH_2 PF06871.6 g73893.t1 - 0.078 12.4 4.5 0.098 12 3.1 1.1 1 0 0 1 1 1 0 TraH_2 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:152314-152831 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~152314-152831 FAM176 PF14851.1 g106443.t1 - 2.6 7.7 5.2 3.2 7.4 3.6 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:205492-205875 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~205492-205875 Rho_N PF07498.7 g97509.t1 - 0.012 15.3 0.1 0.03 14 0.1 1.6 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:262756-264460 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~262756-264460 zf-CCHC PF00098.18 g128896.t1 - 0.0000065 25.8 0.2 0.000011 25 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2898_contigs=1, transcript_loc=scaffold2898_contigs=1:9878-10180 Augustus predicted protein sequence Tobacco scaffold2898_contigs=1~9878-10180 MHCassoc_trimer PF08831.5 g71097.t1 - 0.14 12 1.1 0.18 11.6 0.8 1.2 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:30856-31104 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~30856-31104 SAE2 PF08573.5 g35567.t1 - 0.39 11.4 2.3 0.56 10.9 1.6 1.2 1 0 0 1 1 1 0 DNA repair protein endonuclease SAE2/CtIP C-terminus | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:101745-103018 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~101745-103018 DUF478 PF04334.7 g529.t1 - 0.032 14 0.2 0.04 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF478) | Ref_seq=scaffold22_contigs=2, transcript_loc=scaffold22_contigs=2:48624-49082 Augustus predicted protein sequence Tobacco scaffold22_contigs=2~48624-49082 DUF690 PF05108.8 g72783.t1 - 0.023 13 0 0.027 12.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF690) | Ref_seq=scaffold1520_contigs=13, transcript_loc=scaffold1520_contigs=13:412385-412714 Augustus predicted protein sequence Tobacco scaffold1520_contigs=13~412385-412714 Sec3_C_2 PF15278.1 g130207.t1 - 0.073 13.2 0.6 12 6.1 0 2.2 1 1 1 2 2 2 0 Sec3 exocyst complex subunit | Ref_seq=scaffold3656_contigs=1, transcript_loc=scaffold3656_contigs=1:1021-1356 Augustus predicted protein sequence Tobacco scaffold3656_contigs=1~1021-1356 C1_3 PF07649.7 g59604.t1 - 0.0000072 25.9 13.4 0.008 16.1 1.7 3.5 3 1 0 3 3 3 2 C1-like domain | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:106778-109295 Augustus predicted protein sequence Tobacco scaffold1294_contigs=7~106778-109295 CDC48_2 PF02933.12 g105676.t1 - 0.0035 16.9 0 2.1 8 0 2.6 3 0 0 3 3 3 2 Cell division protein 48 (CDC48), domain 2 | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:266501-267091 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~266501-267091 Cytadhesin_P30 PF07271.6 g119082.t1 - 0.0031 16.8 6.4 0.0038 16.5 4.4 1.1 1 0 0 1 1 1 1 Cytadhesin P30/P32 | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:909681-910145 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~909681-910145 DUF4283 PF14111.1 g11849.t1 - 0.099 11.7 0.1 3.6 6.6 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:20177-20828 Augustus predicted protein sequence Tobacco scaffold416_contigs=9~20177-20828 IFP_35_N PF07334.8 g115715.t1 - 0.0039 17.1 1.2 0.0039 17.1 0.9 2.2 2 1 0 2 2 2 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:105494-105844 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~105494-105844 RVT_3 PF13456.1 g63769.t1 - 6.3E-013 48.3 1.8 0.000019 24.3 0 2.8 2 1 1 3 3 3 2 Reverse transcriptase-like | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:28230-28760 Augustus predicted protein sequence Tobacco scaffold1381_contigs=7~28230-28760 MA3 PF02847.12 g88786.t1 - 0.059 13 0 0.07 12.8 0 1.1 1 0 0 1 1 1 0 MA3 domain | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:126779-127054 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~126779-127054 DUF2627 PF11118.3 g31207.t1 - 0.14 12.2 0 0.21 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2627) | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:10754-11116 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~10754-11116 DUF4201 PF13870.1 g102338.t1 - 0.012 15 9.8 0.023 14.1 2.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:75496-76197 Augustus predicted protein sequence Tobacco scaffold2237_contigs=22~75496-76197 DUF4115 PF13464.1 g123283.t1 - 0.015 14.8 0 0.025 14.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4115) | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:15311-16582 Augustus predicted protein sequence Tobacco scaffold2756_contigs=5~15311-16582 Activator-TraM PF11657.3 g69214.t1 - 0.07 12.6 0.7 0.17 11.3 0.4 1.6 1 1 0 1 1 1 0 Transcriptional activator TraM | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:684934-685428 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~684934-685428 DUF1151 PF06625.6 g77567.t1 - 0.072 12.8 0.3 0.082 12.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1151) | Ref_seq=scaffold1632_contigs=6, transcript_loc=scaffold1632_contigs=6:33899-34219 Augustus predicted protein sequence Tobacco scaffold1632_contigs=6~33899-34219 DUF4462 PF14692.1 g11319.t1 - 0.15 11.3 9.6 1.6 8 0 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4462) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:187177-187551 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~187177-187551 zf-Sec23_Sec24 PF04810.10 g93724.t1 - 0.18 11.3 3.3 0.35 10.4 2.3 1.5 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:448668-448979 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~448668-448979 UBN2 PF14223.1 g123574.t1 - 0.00037 20.2 0.1 0.00058 19.6 0.1 1.4 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:21445-22790 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~21445-22790 DUF4182 PF13790.1 g101501.t1 - 0.056 13.2 0.3 13 5.6 0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:167025-167468 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~167025-167468 Transposase_22 PF02994.9 g68591.t1 - 0.1 11 0.7 0.13 10.7 0.5 1 1 0 0 1 1 1 0 L1 transposable element | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:539144-539730 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~539144-539730 SHMT PF00464.14 g99459.t1 - 0.13 10.5 0 0.17 10.2 0 1.1 1 0 0 1 1 1 0 Serine hydroxymethyltransferase | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:610238-611222 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~610238-611222 BUD22 PF09073.5 g126562.t1 - 0.084 11.9 3.1 0.1 11.6 2.2 1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold2798_contigs=1, transcript_loc=scaffold2798_contigs=1:72164-73204 Augustus predicted protein sequence Tobacco scaffold2798_contigs=1~72164-73204 RNase_H2-Ydr279 PF09468.5 g6154.t1 - 0.089 11.9 3.4 0.25 10.4 2.4 1.7 1 1 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:142207-142933 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~142207-142933 TPR_7 PF13176.1 g45612.t1 - 0.16 11.8 1 0.3 10.9 0.1 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:217701-218219 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~217701-218219 DUF4172 PF13776.1 g55821.t1 - 0.066 13.3 0.4 0.11 12.5 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:5927-6247 Augustus predicted protein sequence Tobacco scaffold1233_contigs=6~5927-6247 YpzI PF14140.1 g28404.t1 - 0.15 11.6 1.6 0.42 10.1 0 2.1 2 0 0 2 2 2 0 YpzI-like protein | Ref_seq=scaffold745_contigs=9, transcript_loc=scaffold745_contigs=9:38708-39233 Augustus predicted protein sequence Tobacco scaffold745_contigs=9~38708-39233 Dscam_C PF12355.3 g66257.t1 - 0.087 13 0.7 0.12 12.6 0.5 1.2 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:61380-61763 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~61380-61763 NESP55 PF06390.7 g39678.t1 - 0.3 10.4 28.7 1.6 8 7.4 2.2 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold960_contigs=13, transcript_loc=scaffold960_contigs=13:48427-49074 Augustus predicted protein sequence Tobacco scaffold960_contigs=13~48427-49074 DUF4472 PF14739.1 g25894.t1 - 0.00079 19.8 3.8 0.24 11.8 0.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4472) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:30551-30960 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~30551-30960 Peptidase_M3_N PF08439.5 g9875.t1 - 0.18 11.8 1.1 0.21 11.6 0.2 1.6 2 0 0 2 2 2 0 Oligopeptidase F | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:237734-238371 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~237734-238371 Tissue_fac PF01108.12 g43420.t1 - 0.072 12.8 0 0.095 12.4 0 1.3 1 0 0 1 1 1 0 Tissue factor | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:195541-195819 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~195541-195819 UBN2 PF14223.1 g28564.t1 - 0.000000026 33.6 0.5 0.000000032 33.3 0.4 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:207250-207468 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~207250-207468 DUF3346 PF11826.3 g71462.t1 - 0.054 13.2 0 0.064 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3346) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:79636-80166 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~79636-80166 CBM_X PF06204.6 g36110.t1 - 0.15 11.5 0.1 0.25 10.8 0 1.4 1 0 0 1 1 1 0 Putative carbohydrate binding domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:291773-292096 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~291773-292096 ATHILA PF03078.10 g47507.t1 - 0.003 16.2 0 0.0062 15.1 0 1.4 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:140615-141887 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~140615-141887 Pox_A3L PF05288.6 g122942.t1 - 0.21 11.3 2.4 0.84 9.4 1.7 1.9 1 1 1 2 2 2 0 Poxvirus A3L Protein | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:211512-212709 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~211512-212709 FeS PF04060.8 g58022.t1 - 0.19 11.3 1.1 0.34 10.5 0.7 1.4 1 0 0 1 1 1 0 Putative Fe-S cluster | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:148004-148237 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~148004-148237 FlbT PF07378.6 g44355.t1 - 0.095 12.5 0.1 0.16 11.8 0 1.4 1 1 0 1 1 1 0 Flagellar protein FlbT | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:335832-336832 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~335832-336832 DUF2092 PF09865.4 g50802.t1 - 0.14 11.1 0.4 0.29 10.1 0.2 1.5 1 1 1 2 2 2 0 Predicted periplasmic protein (DUF2092) | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:200389-200664 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~200389-200664 APC_CDC26 PF10471.4 g70280.t1 - 0.77 10.5 5.3 9.2 7 0.6 2.1 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:212494-212802 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~212494-212802 MCPVI PF02993.9 g21434.t1 - 2 8.5 7 2.3 8.2 4.8 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:459012-459491 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~459012-459491 He_PIG PF05345.7 g98412.t1 - 0.0033 17.4 2.4 2.6 8.1 0.1 3.2 2 1 0 2 2 2 2 Putative Ig domain | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:97458-99436 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~97458-99436 Pox_Ag35 PF03286.9 g105358.t1 - 0.51 9.8 9 0.52 9.7 6.2 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:461641-461874 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~461641-461874 RVT_3 PF13456.1 g85569.t1 - 0.0000005 29.3 0 0.00000077 28.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:76994-78244 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~76994-78244 DUF3584 PF12128.3 g74772.t1 - 0.00094 16.6 3.2 0.0011 16.4 2.2 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:56906-57286 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~56906-57286 eRF1_1 PF03463.10 g57346.t1 - 0.036 13.6 0 0.047 13.2 0 1.1 1 0 0 1 1 1 0 eRF1 domain 1 | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:88730-90163 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~88730-90163 IL8 PF00048.15 g71105.t1 - 0.84 9.6 4 1.1 9.2 2.5 1.4 1 1 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:37680-37898 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~37680-37898 Elf1 PF05129.8 g60198.t1 - 0.15 11.7 3 0.19 11.4 2.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:198080-198611 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~198080-198611 RRM_5 PF13893.1 g102433.t1 - 0.06 13.2 0 0.081 12.7 0 1.2 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | Ref_seq=scaffold2246_contigs=8, transcript_loc=scaffold2246_contigs=8:49118-51368 Augustus predicted protein sequence Tobacco scaffold2246_contigs=8~49118-51368 UPF0193 PF05250.6 g49644.t1 - 0.032 13.8 0.2 2.3 7.7 0 2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0193) | Ref_seq=scaffold1131_contigs=3, transcript_loc=scaffold1131_contigs=3:88695-89393 Augustus predicted protein sequence Tobacco scaffold1131_contigs=3~88695-89393 Ribonuclease_3 PF00636.21 g12765.t1 - 0.088 13.2 0.1 0.13 12.7 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease III domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:434890-435775 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~434890-435775 DUF1347 PF07079.6 g23071.t1 - 0.026 12.7 0.1 0.031 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:35523-35909 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~35523-35909 Pan_kinase PF03309.9 g34354.t1 - 0.084 12.3 0 0.097 12.1 0 1.1 1 0 0 1 1 1 0 Type III pantothenate kinase | Ref_seq=scaffold851_contigs=3, transcript_loc=scaffold851_contigs=3:7509-8771 Augustus predicted protein sequence Tobacco scaffold851_contigs=3~7509-8771 14-3-3 PF00244.15 g119613.t1 - 0.0014 17.7 0.2 0.0019 17.3 0.1 1.2 1 0 0 1 1 1 1 14-3-3 protein | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:57816-59837 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~57816-59837 DUF3721 PF12518.3 g72462.t1 - 5.4 6.7 6.2 0.39 10.3 0.3 2 2 0 0 2 2 2 0 Protein of unknown function | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:34400-35464 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~34400-35464 Apelin PF15360.1 g74851.t1 - 0.024 14.8 1.3 0.12 12.5 0 2.6 3 0 0 3 3 3 0 APJ endogenous ligand | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:199381-200564 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~199381-200564 Spike_rec_bind PF09408.5 g23197.t1 - 0.044 13.2 0.6 0.052 13 0.4 1 1 0 0 1 1 1 0 Spike receptor binding domain | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:2498-2800 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~2498-2800 MAP65_ASE1 PF03999.7 g45015.t1 - 0.052 12.1 3.9 0.058 11.9 2.7 1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:219568-220224 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~219568-220224 FH2 PF02181.18 g34733.t1 - 0.0014 17.6 0.3 0.0016 17.3 0.2 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:181908-182354 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~181908-182354 Gln-synt_N PF03951.14 g111911.t1 - 0.0009 18.7 1.8 0.72 9.4 0 2.7 1 1 2 3 3 3 2 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:4938-6425 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~4938-6425 p47_phox_C PF08944.6 g74133.t1 - 0.09 12.9 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:596478-596822 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~596478-596822 MBOAT_2 PF13813.1 g33132.t1 - 0.054 13.5 0 0.089 12.8 0 1.3 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:490034-491206 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~490034-491206 MspA PF09203.6 g47495.t1 - 0.091 12.2 0.1 0.11 11.9 0 1.1 1 0 0 1 1 1 0 MspA | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:123323-123598 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~123323-123598 Herpes_DNAp_acc PF04929.7 g37628.t1 - 9 5.1 7.7 9.9 5 5.3 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:96539-97310 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~96539-97310 DUF2393 PF09624.5 g66510.t1 - 1.2 8.6 3.4 0.89 9 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2393) | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:268262-269008 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~268262-269008 Minor_capsid_3 PF12691.2 g24143.t1 - 0.062 13 0 4.2 7 0 2.1 2 0 0 2 2 2 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold665_contigs=4, transcript_loc=scaffold665_contigs=4:13127-14361 Augustus predicted protein sequence Tobacco scaffold665_contigs=4~13127-14361 DUF2385 PF09539.5 g54211.t1 - 0.006 16.9 0.1 0.013 15.8 0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2385) | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:22840-24282 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~22840-24282 DUF1182 PF06681.8 g41999.t1 - 0.11 11.6 0 0.14 11.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1182) | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:6792-7485 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~6792-7485 M PF02370.11 g27341.t1 - 2.7 8.6 5.9 25 5.7 2.4 2.5 2 0 0 2 2 2 0 M protein repeat | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:29569-30066 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~29569-30066 zf-C2H2_4 PF13894.1 g100910.t1 - 0.18 12.2 2.8 0.23 11.8 0.4 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:325218-327565 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~325218-327565 RE_HaeIII PF09556.5 g109868.t1 - 0.052 12.4 0.1 0.061 12.1 0.1 1.1 1 0 0 1 1 1 0 HaeIII restriction endonuclease | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:375430-375756 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~375430-375756 DUF1985 PF09331.6 g105379.t1 - 0.00022 21 0 0.00035 20.4 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:535426-537831 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~535426-537831 Tim44 PF04280.10 g107588.t1 - 0.0049 16.8 0.2 0.0056 16.6 0.1 1.1 1 0 0 1 1 1 1 Tim44-like domain | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:31053-32065 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~31053-32065 BAF1_ABF1 PF04684.8 g29013.t1 - 0.4 9.4 2.1 0.6 8.8 1.4 1.2 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:5867-9435 Augustus predicted protein sequence Tobacco scaffold754_contigs=7~5867-9435 Tropomyosin_1 PF12718.2 g52401.t1 - 0.0049 16.7 3.7 0.0056 16.5 2.6 1.1 1 0 0 1 1 1 1 Tropomyosin like | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:170435-170800 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~170435-170800 DUF4219 PF13961.1 g18694.t1 - 0.0013 18 0.5 0.0013 18 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:464103-464895 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~464103-464895 DUF3552 PF12072.3 g52054.t1 - 0.061 12.5 2.1 0.065 12.4 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:263299-264322 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~263299-264322 Omp28 PF11551.3 g59076.t1 - 0.069 12.6 0 0.092 12.2 0 1.1 1 0 0 1 1 1 0 Outer membrane protein Omp28 | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:189303-189755 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~189303-189755 PSD2 PF07624.6 g26571.t1 - 0.04 13.5 0.6 0.12 12 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1585) | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:157630-157830 Augustus predicted protein sequence Tobacco scaffold717_contigs=7~157630-157830 IlvGEDA_leader PF08046.6 g62085.t1 - 0.062 12.4 0.5 0.13 11.3 0.3 1.6 1 0 0 1 1 1 0 IlvGEDA operon leader peptide | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:356236-358951 Augustus predicted protein sequence Tobacco scaffold1345_contigs=14~356236-358951 Remorin_C PF03763.8 g115525.t1 - 0.011 15.2 7.3 0.015 14.8 5 1.1 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:578183-578518 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~578183-578518 NPCBM_assoc PF10633.4 g65388.t1 - 0.077 13 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:151141-152498 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~151141-152498 PDCD2_C PF04194.8 g61565.t1 - 0.029 13.9 0 0.037 13.6 0 1.2 1 0 0 1 1 1 0 Programmed cell death protein 2, C-terminal putative domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:132549-134387 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~132549-134387 SlyX PF04102.7 g99828.t1 - 0.42 11 2.9 1.9 8.8 2 2.1 1 1 0 1 1 1 0 SlyX | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:87847-88260 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~87847-88260 Myb_DNA-bind_3 PF12776.2 g14559.t1 - 0.00073 20.1 0.2 0.00092 19.7 0.2 1.1 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold477_contigs=4, transcript_loc=scaffold477_contigs=4:37401-37706 Augustus predicted protein sequence Tobacco scaffold477_contigs=4~37401-37706 RXT2_N PF08595.6 g66496.t1 - 0.025 14.3 0.1 0.029 14.1 0.1 1.1 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:246180-246524 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~246180-246524 SLR1-BP PF07333.7 g22382.t1 - 0.22 11.8 3 0.34 11.1 2.1 1.4 1 1 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold619_contigs=14, transcript_loc=scaffold619_contigs=14:94164-94927 Augustus predicted protein sequence Tobacco scaffold619_contigs=14~94164-94927 RVT_3 PF13456.1 g108765.t1 - 0.00012 21.7 0 0.00018 21.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:177362-177722 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~177362-177722 DBD_Tnp_Mut PF03108.10 g12403.t1 - 0.00000095 28.3 1.7 0.0000011 28.1 1.1 1.3 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:183518-183730 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~183518-183730 OpgC_C PF10129.4 g93092.t1 - 0.08 11.6 0 0.12 11 0 1.1 1 0 0 1 1 1 0 OpgC protein | Ref_seq=scaffold2006_contigs=6, transcript_loc=scaffold2006_contigs=6:31248-32765 Augustus predicted protein sequence Tobacco scaffold2006_contigs=6~31248-32765 Herpes_TAF50 PF03326.8 g68824.t1 - 0.054 12.4 0.1 0.061 12.2 0.1 1 1 0 0 1 1 1 0 Herpesvirus transcription activation factor (transactivator) | Ref_seq=scaffold1481_contigs=2, transcript_loc=scaffold1481_contigs=2:25685-26122 Augustus predicted protein sequence Tobacco scaffold1481_contigs=2~25685-26122 NTR2 PF15458.1 g86789.t1 - 0.0019 17.4 1.4 0.0028 16.9 1 1.3 1 0 0 1 1 1 1 Nineteen complex-related protein 2 | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:50398-50826 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~50398-50826 SUKH-3 PF14433.1 g97719.t1 - 0.07 12.9 0 0.078 12.7 0 1 1 0 0 1 1 1 0 SUKH-3 immunity protein | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:20579-21294 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~20579-21294 PspA_IM30 PF04012.7 g106356.t1 - 0.0023 17.3 1.6 0.0027 17.1 1.1 1.1 1 0 0 1 1 1 1 PspA/IM30 family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:24889-25158 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~24889-25158 Trp_leader2 PF08056.6 g75521.t1 - 0.048 13.6 3 0.078 12.9 2.1 1.3 1 0 0 1 1 1 0 Tryptophan operon leader peptide | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:131554-131835 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~131554-131835 DUF1003 PF06210.6 g29756.t1 - 0.071 13 0.8 0.1 12.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:19211-19606 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~19211-19606 zf-CCHC PF00098.18 g123131.t1 - 0.000031 23.6 0.7 0.000044 23.1 0.5 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:44057-44404 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~44057-44404 zf-CCHC PF00098.18 g639.t1 - 0.000029 23.7 1.1 0.000051 22.9 0.8 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold37_contigs=1, transcript_loc=scaffold37_contigs=1:2832-4240 Augustus predicted protein sequence Tobacco scaffold37_contigs=1~2832-4240 Daxx PF03344.10 g109630.t1 - 0.013 13.9 9.5 0.014 13.9 6.6 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:183656-184784 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~183656-184784 RVT_3 PF13456.1 g68352.t1 - 0.075 12.8 0 0.4 10.4 0 2 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold1473_contigs=6, transcript_loc=scaffold1473_contigs=6:108090-108731 Augustus predicted protein sequence Tobacco scaffold1473_contigs=6~108090-108731 Med21 PF11221.3 g42976.t1 - 0.0068 16.3 1.6 24 4.9 0 3.8 1 1 3 4 4 4 0 Subunit 21 of Mediator complex | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:66777-68219 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~66777-68219 Pilt PF15453.1 g592.t1 - 0.27 10.8 2.2 0.36 10.4 1.5 1.3 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:27641-28587 Augustus predicted protein sequence Tobacco scaffold31_contigs=1~27641-28587 Bim_N PF06773.6 g47384.t1 - 0.23 11.2 1.9 0.42 10.4 1.3 1.5 1 0 0 1 1 1 0 Bim protein N-terminus | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:39220-39456 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~39220-39456 ING PF12998.2 g1849.t1 - 0.07 13.4 0.1 0.07 13.4 0.1 2.3 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:55439-55975 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~55439-55975 VGCC_beta4Aa_N PF12052.3 g60121.t1 - 0.0036 17.1 3.7 0.0078 16 2.5 1.6 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:53637-57652 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~53637-57652 P53_tetramer PF07710.6 g80850.t1 - 0.095 11.8 0 0.27 10.3 0 1.7 2 0 0 2 2 2 0 P53 tetramerisation motif | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:176024-176254 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~176024-176254 Mg-por_mtran_C PF07109.6 g28455.t1 - 0.023 14.7 0 0.037 14 0 1.4 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:143092-143427 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~143092-143427 DUF4201 PF13870.1 g69959.t1 - 0.023 14.1 0.3 0.036 13.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:658670-659383 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~658670-659383 I_LWEQ PF01608.12 g126735.t1 - 0.093 12.6 0.7 0.097 12.6 0.5 1.1 1 0 0 1 1 1 0 I/LWEQ domain | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:56453-56752 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~56453-56752 PI-PLC-X PF00388.14 g15256.t1 - 0.067 12.5 0 0.1 11.9 0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:11903-12250 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~11903-12250 PetN PF03742.9 g11405.t1 - 1.2 8.7 5.2 0.28 10.7 0.3 2.4 2 0 0 2 2 2 0 PetN | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:200004-200912 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~200004-200912 HSCB_C PF07743.8 g73266.t1 - 6.2 7.3 8.3 7.2 7.1 0.9 2.4 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:98326-98949 Augustus predicted protein sequence Tobacco scaffold1535_contigs=9~98326-98949 DXP_reductoisom PF02670.11 g11195.t1 - 0.051 14.1 0.6 0.078 13.5 0.4 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:319966-320718 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~319966-320718 Cupredoxin_1 PF13473.1 g82051.t1 - 0.02 14.7 0.4 0.027 14.3 0.3 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:571923-572316 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~571923-572316 GP41 PF00517.12 g106962.t1 - 0.046 13.2 0.5 0.05 13.1 0.4 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:138488-138793 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~138488-138793 Med12 PF09497.5 g124820.t1 - 0.15 12 0.3 0.66 9.9 0.2 2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:211665-212096 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~211665-212096 MULE PF10551.4 g19416.t1 - 0.0019 18.3 0 0.0047 17 0 1.7 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:402801-403863 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~402801-403863 CRM1_C PF08767.6 g102191.t1 - 0.03 13.2 0 0.032 13.1 0 1 1 0 0 1 1 1 0 CRM1 C terminal | Ref_seq=scaffold2234_contigs=2, transcript_loc=scaffold2234_contigs=2:11777-12034 Augustus predicted protein sequence Tobacco scaffold2234_contigs=2~11777-12034 Tropomyosin_1 PF12718.2 g91748.t1 - 0.13 12.1 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:46539-47219 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~46539-47219 DUF4588 PF15251.1 g66237.t1 - 0.085 12.8 7.9 0.095 12.6 5.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4588) | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:35956-36399 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~35956-36399 ParB PF08775.5 g29166.t1 - 0.11 12.8 0.1 0.14 12.4 0.1 1.1 1 0 0 1 1 1 0 ParB family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:216840-217301 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~216840-217301 HTH_33 PF13592.1 g83887.t1 - 0.06 12.8 0.7 11 5.6 0 3.1 3 0 0 3 3 3 0 Winged helix-turn helix | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:123882-125149 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~123882-125149 Sporozoite_P67 PF05642.6 g92387.t1 - 0.094 10.5 0.1 0.1 10.4 0.1 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:450373-450852 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~450373-450852 Agouti PF05039.7 g47211.t1 - 0.49 10.7 2.4 0.63 10.4 1.7 1.2 1 0 0 1 1 1 0 Agouti protein | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:312142-312541 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~312142-312541 Upf2 PF04050.9 g78194.t1 - 0.075 12.7 0.6 0.08 12.7 0.4 1.1 1 0 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold1641_contigs=4, transcript_loc=scaffold1641_contigs=4:26950-27159 Augustus predicted protein sequence Tobacco scaffold1641_contigs=4~26950-27159 CENP-F_leu_zip PF10473.4 g75813.t1 - 0.0051 16.6 7.1 0.0088 15.9 4.9 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1603_contigs=1, transcript_loc=scaffold1603_contigs=1:44127-44438 Augustus predicted protein sequence Tobacco scaffold1603_contigs=1~44127-44438 SH3BGR PF04908.10 g94635.t1 - 0.51 10.3 2.8 2.2 8.2 0.4 2.1 1 1 1 2 2 2 0 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:214682-214987 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~214682-214987 RNA_polI_A34 PF08208.6 g72320.t1 - 0.23 11.1 7.6 0.24 11 5.3 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:792755-793255 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~792755-793255 U1snRNP70_N PF12220.3 g117236.t1 - 0.017 15.4 0 1.4 9.3 0 2.2 1 1 1 2 2 2 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:197731-198069 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~197731-198069 DUF417 PF04224.7 g44345.t1 - 0.071 12.4 0.1 0.087 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:308844-309528 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~308844-309528 PRCC PF10253.4 g93726.t1 - 0.094 13.3 0.1 0.16 12.6 0 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:449479-450980 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~449479-450980 FBD PF08387.5 g117357.t1 - 0.013 14.9 0 0.034 13.6 0 1.7 1 0 0 1 1 1 0 FBD | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:301551-303024 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~301551-303024 HD-ZIP_N PF04618.7 g10282.t1 - 0.00029 21.3 0.1 0.00032 21.1 0.1 1.1 1 0 0 1 1 1 1 HD-ZIP protein N terminus | Ref_seq=scaffold385_contigs=8, transcript_loc=scaffold385_contigs=8:134483-134707 Augustus predicted protein sequence Tobacco scaffold385_contigs=8~134483-134707 DUF1440 PF07274.7 g128219.t1 - 0.082 12.9 0 0.086 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:6033-6236 Augustus predicted protein sequence Tobacco scaffold2856_contigs=1~6033-6236 Dodecin PF07311.7 g47736.t1 - 1.1 9.2 5.1 1.9 8.5 1.9 2.1 1 1 1 2 2 2 0 Dodecin | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:651577-652428 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~651577-652428 Cnl2_NKP2 PF09447.5 g68999.t1 - 0.14 11.8 0 0.22 11.1 0 1.4 1 0 0 1 1 1 0 Cnl2/NKP2 family protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:274799-275217 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~274799-275217 CRA PF06589.6 g51384.t1 - 0.19 11 0.7 0.29 10.4 0.3 1.4 1 1 0 1 1 1 0 Circumsporozoite-related antigen (CRA) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:194095-194424 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~194095-194424 YdjO PF14169.1 g33425.t1 - 0.15 11.5 0 0.23 10.9 0 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:126551-128717 Augustus predicted protein sequence Tobacco scaffold831_contigs=10~126551-128717 gag-asp_proteas PF13975.1 g113692.t1 - 0.012 15.3 0.1 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:215529-216350 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~215529-216350 V_ATPase_I PF01496.14 g50605.t1 - 0.0045 14.9 2.2 0.0057 14.5 1.5 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:55489-59175 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~55489-59175 zf-BED PF02892.10 g40889.t1 - 0.023 14.4 2.1 0.066 12.9 1.5 1.8 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:94548-95135 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~94548-95135 Fig1 PF12351.3 g127066.t1 - 0.092 12.6 0.2 0.11 12.4 0.2 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:79088-79459 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~79088-79459 TPX2 PF06886.6 g123145.t1 - 0.17 11.9 3.8 5.7 7 0.5 2.5 2 0 0 2 2 2 0 Targeting protein for Xklp2 (TPX2) | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:65299-65946 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~65299-65946 DUF3287 PF11690.3 g40077.t1 - 0.013 15.5 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:399805-400158 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~399805-400158 DUF1983 PF09327.6 g56193.t1 - 0.096 12.6 0 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1983) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:208900-209142 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~208900-209142 UBN2_2 PF14227.1 g127715.t1 - 0.011 15.3 0.1 0.017 14.6 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:40967-43571 Augustus predicted protein sequence Tobacco scaffold2834_contigs=1~40967-43571 DUF3905 PF13045.1 g18594.t1 - 0.065 13 0.3 0.19 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3905) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:286597-287720 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~286597-287720 DUF3226 PF11536.3 g78720.t1 - 0.0039 16.6 1 0.004 16.6 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:34425-34930 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~34425-34930 DUF2205 PF10224.4 g12511.t1 - 0.04 13.4 0.2 0.062 12.8 0.1 1.3 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:36263-36484 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~36263-36484 PAT1 PF09770.4 g89391.t1 - 3.2 5.8 8.7 3.4 5.7 6.1 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:33347-35226 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~33347-35226 Pinin_SDK_memA PF04696.8 g13128.t1 - 0.092 12.3 4.3 3.9 7 0.2 2.2 2 0 0 2 2 2 0 pinin/SDK/memA/ protein conserved region | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:208797-213380 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~208797-213380 DUF1682 PF07946.9 g35606.t1 - 0.031 13.1 5.8 0.03 13.1 4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:178001-178504 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~178001-178504 Transposase_24 PF03004.9 g7456.t1 - 0.0037 17.1 0.1 0.0054 16.6 0.1 1.3 1 0 0 1 1 1 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:123111-125618 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~123111-125618 DUF987 PF06174.6 g77221.t1 - 0.076 12.5 0 0.13 11.7 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF987) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:139269-140084 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~139269-140084 Myc_N PF01056.13 g58440.t1 - 0.0097 15.1 0.5 0.0097 15.1 0.3 1.1 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:55583-55831 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~55583-55831 DUF2613 PF11021.3 g129133.t1 - 0.032 13.9 2.8 4 7.2 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) | Ref_seq=scaffold2918_contigs=1, transcript_loc=scaffold2918_contigs=1:14108-14686 Augustus predicted protein sequence Tobacco scaffold2918_contigs=1~14108-14686 Dirigent PF03018.9 g86828.t1 - 0.13 11.7 0.1 0.2 11.1 0 1.3 1 0 0 1 1 1 0 Dirigent-like protein | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:182909-187737 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~182909-187737 Axin_b-cat_bind PF08833.5 g25883.t1 - 2.3 8 4.5 2 8.1 0.3 2.4 1 1 1 2 2 2 0 Axin beta-catenin binding domain | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:12221-12903 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~12221-12903 Formyl_trans_N PF00551.14 g70700.t1 - 0.021 14.3 0 0.024 14.1 0 1.2 1 0 0 1 1 1 0 Formyl transferase | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:5937-6308 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~5937-6308 DivIC PF04977.10 g43404.t1 - 0.0027 17.1 4.4 0.0058 16 3 1.6 1 0 0 1 1 1 1 Septum formation initiator | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:154965-155840 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~154965-155840 PS_Dcarbxylase PF02666.10 g112643.t1 - 0.01 15.1 0 0.011 15 0 1 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase | Ref_seq=scaffold2614_contigs=14, transcript_loc=scaffold2614_contigs=14:8519-8737 Augustus predicted protein sequence Tobacco scaffold2614_contigs=14~8519-8737 Fer4_19 PF06902.6 g115141.t1 - 0.11 12.3 0.2 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:81946-84364 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~81946-84364 Sortase PF04203.8 g61090.t1 - 0.09 12.3 0 0.1 12.1 0 1.1 1 0 0 1 1 1 0 Sortase family | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:30178-30935 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~30178-30935 zinc_ribbon_2 PF13240.1 g107905.t1 - 2.4 7.7 9 7.4 6.1 0.2 2.1 2 1 1 3 3 3 0 zinc-ribbon domain | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:524515-524724 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~524515-524724 PRCC PF10253.4 g70271.t1 - 0.023 15.4 0.1 0.024 15.3 0.1 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:192193-192417 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~192193-192417 ESR1_C PF12743.2 g25688.t1 - 0.036 13.6 0.3 0.036 13.6 0.2 2.3 2 0 0 2 2 2 0 Oestrogen-type nuclear receptor final C-terminal | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:66965-67366 Augustus predicted protein sequence Tobacco scaffold703_contigs=10~66965-67366 Endonuclease_NS PF01223.18 g109502.t1 - 0.00089 18.9 1.2 0.72 9.4 0.1 2.1 1 1 0 2 2 2 2 DNA/RNA non-specific endonuclease | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:118795-119292 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~118795-119292 PqqD PF05402.7 g58065.t1 - 0.017 15.1 0 0.027 14.4 0 1.3 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:264932-265678 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~264932-265678 DUF2103 PF09876.4 g121877.t1 - 0.12 12 0 0.18 11.5 0 1.4 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2103) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:622796-623098 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~622796-623098 Pho88 PF10032.4 g73172.t1 - 0.09 11.9 0 0.098 11.8 0 1 1 0 0 1 1 1 0 Phosphate transport (Pho88) | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:109074-109280 Augustus predicted protein sequence Tobacco scaffold1531_contigs=12~109074-109280 NPV_P10 PF05531.7 g88980.t1 - 0.033 14.4 0.1 0.042 14 0.1 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:332279-332593 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~332279-332593 CENP-T PF15511.1 g3252.t1 - 0.0073 15.5 0.9 0.0083 15.4 0.6 1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:122085-122441 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~122085-122441 FGE-sulfatase PF03781.11 g51181.t1 - 0.012 15 0.1 0.015 14.6 0 1.1 1 0 0 1 1 1 0 Sulfatase-modifying factor enzyme 1 | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:126752-128529 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~126752-128529 Dscam_C PF12355.3 g18838.t1 - 0.063 13.5 0.5 0.068 13.4 0.3 1.1 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold557_contigs=11, transcript_loc=scaffold557_contigs=11:239275-239755 Augustus predicted protein sequence Tobacco scaffold557_contigs=11~239275-239755 CENP-Q PF13094.1 g19288.t1 - 0.017 15.1 3.6 0.018 15 2.5 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold565_contigs=2, transcript_loc=scaffold565_contigs=2:2207-2503 Augustus predicted protein sequence Tobacco scaffold565_contigs=2~2207-2503 RVT_3 PF13456.1 g22492.t1 - 0.0029 17.3 0 0.0039 16.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:102959-103219 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~102959-103219 DUF3931 PF13082.1 g1302.t1 - 0.12 12.1 0.1 0.31 10.9 0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3931) | Ref_seq=scaffold168_contigs=8, transcript_loc=scaffold168_contigs=8:5860-6219 Augustus predicted protein sequence Tobacco scaffold168_contigs=8~5860-6219 zf-rbx1 PF12678.2 g117288.t1 - 0.04 14 0.3 0.049 13.7 0.2 1.2 1 0 0 1 1 1 0 RING-H2 zinc finger | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:57041-58211 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~57041-58211 zf-CCHC PF00098.18 g115036.t1 - 0.0000037 26.6 0.8 0.0000051 26.1 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:265260-265505 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~265260-265505 DBD_Tnp_Mut PF03108.10 g73760.t1 - 0.15 11.6 0.2 0.29 10.7 0 1.5 2 0 0 2 2 2 0 MuDR family transposase | Ref_seq=scaffold1544_contigs=6, transcript_loc=scaffold1544_contigs=6:157861-158130 Augustus predicted protein sequence Tobacco scaffold1544_contigs=6~157861-158130 PAC2 PF09754.4 g128317.t1 - 0.039 13.7 0 0.044 13.6 0 1 1 0 0 1 1 1 0 PAC2 family | Ref_seq=scaffold2862_contigs=1, transcript_loc=scaffold2862_contigs=1:1203-1487 Augustus predicted protein sequence Tobacco scaffold2862_contigs=1~1203-1487 MamL-1 PF09596.5 g87966.t1 - 0.0063 16.2 0.6 0.011 15.5 0.4 1.4 1 0 0 1 1 1 1 MamL-1 domain | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:41182-43953 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~41182-43953 5_3_exonuc PF01367.15 g28177.t1 - 0.27 11.4 4 0.37 11 2.8 1.3 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold | Ref_seq=scaffold741_contigs=2, transcript_loc=scaffold741_contigs=2:18267-18587 Augustus predicted protein sequence Tobacco scaffold741_contigs=2~18267-18587 EF-hand_9 PF14658.1 g93970.t1 - 0.14 12 0.3 20 5.2 0 2.6 3 0 0 3 3 3 0 EF-hand domain | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:317793-318224 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~317793-318224 RVT_3 PF13456.1 g66732.t1 - 0.0000091 25.3 0.2 0.000017 24.4 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:533751-534047 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~533751-534047 DUF4597 PF15366.1 g94957.t1 - 0.038 13.5 0 0.048 13.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4597) | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:84613-84858 Augustus predicted protein sequence Tobacco scaffold2049_contigs=3~84613-84858 SR-25 PF10500.4 g47595.t1 - 0.6 9.5 6.7 0.67 9.3 4.7 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:289703-290287 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~289703-290287 DUF3275 PF11679.3 g63605.t1 - 0.13 11.9 0.4 0.13 11.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:83029-83426 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~83029-83426 TPR_MLP1_2 PF07926.7 g57507.t1 - 0.05 13.3 0.2 0.051 13.3 0.1 1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1251_contigs=2, transcript_loc=scaffold1251_contigs=2:8396-8608 Augustus predicted protein sequence Tobacco scaffold1251_contigs=2~8396-8608 ATHILA PF03078.10 g53230.t1 - 0.00031 19.4 0 0.0037 15.9 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:41278-41655 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~41278-41655 Spike_rec_bind PF09408.5 g46202.t1 - 0.0046 16.4 0.1 0.0068 15.9 0.1 1.2 1 0 0 1 1 1 1 Spike receptor binding domain | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:56682-59055 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~56682-59055 DUF2366 PF10171.4 g34964.t1 - 0.0084 15.6 0.1 0.0089 15.5 0 1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2366) | Ref_seq=scaffold864_contigs=13, transcript_loc=scaffold864_contigs=13:25415-25675 Augustus predicted protein sequence Tobacco scaffold864_contigs=13~25415-25675 IL8 PF00048.15 g101019.t1 - 0.025 14.5 0.1 0.034 14.1 0.1 1.1 1 0 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:93592-96783 Augustus predicted protein sequence Tobacco scaffold2207_contigs=13~93592-96783 DUF2146 PF10220.4 g31026.t1 - 0.0024 15.9 0.6 0.0031 15.5 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2146) | Ref_seq=scaffold783_contigs=5, transcript_loc=scaffold783_contigs=5:78364-78987 Augustus predicted protein sequence Tobacco scaffold783_contigs=5~78364-78987 CENP-B_dimeris PF09026.5 g81159.t1 - 0.087 13 6.2 0.1 12.8 4.3 1.2 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:62294-62542 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~62294-62542 DUF2039 PF10217.4 g41188.t1 - 1.8 8.6 5.8 6.5 6.8 4 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) | Ref_seq=scaffold984_contigs=3, transcript_loc=scaffold984_contigs=3:48677-49006 Augustus predicted protein sequence Tobacco scaffold984_contigs=3~48677-49006 Nucleoplasmin PF03066.10 g40342.t1 - 0.019 14.4 0.4 0.019 14.4 0.3 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:148445-151174 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~148445-151174 DUF2481 PF10654.4 g28223.t1 - 0.021 14.5 0 0.053 13.2 0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2481) | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:176939-177397 Augustus predicted protein sequence Tobacco scaffold742_contigs=5~176939-177397 zf-CCHC PF00098.18 g51948.t1 - 0.087 12.7 0.2 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:24625-24849 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~24625-24849 Adeno_E3_14_5 PF04834.7 g39173.t1 - 0.17 12.3 1 0.2 12 0.7 1.1 1 0 0 1 1 1 0 Early E3 14.5 kDa protein | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:45570-45773 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~45570-45773 ATHILA PF03078.10 g44550.t1 - 2.1E-009 36.4 0 0.0000029 26.1 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:384635-385430 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~384635-385430 Reg_prop PF07494.6 g39338.t1 - 0.17 11.9 0.2 0.17 11.9 0.1 2.3 3 0 0 3 3 3 0 Two component regulator propeller | Ref_seq=scaffold953_contigs=8, transcript_loc=scaffold953_contigs=8:140921-141800 Augustus predicted protein sequence Tobacco scaffold953_contigs=8~140921-141800 GcrA PF07750.6 g82341.t1 - 0.0026 17.9 0.7 0.0086 16.2 0.2 2.1 1 1 1 2 2 2 1 GcrA cell cycle regulator | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:275870-276271 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~275870-276271 UBN2_2 PF14227.1 g74006.t1 - 0.08 12.5 0 0.098 12.2 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:367700-367912 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~367700-367912 ATHILA PF03078.10 g91474.t1 - 0.000015 23.8 0 0.00016 20.4 0 1.9 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:55995-56369 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~55995-56369 Pollen_Ole_e_I PF01190.12 g87176.t1 - 0.015 15 0 0.021 14.6 0 1.1 1 0 0 1 1 1 0 Pollen proteins Ole e I like | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:356760-357191 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~356760-357191 DUF2048 PF09752.4 g66552.t1 - 0.12 11.2 0 0.13 11 0 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:39401-39820 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~39401-39820 Phosphonate-bd PF12974.2 g40752.t1 - 0.027 13.8 0 0.029 13.7 0 1.1 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:477997-478368 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~477997-478368 ACC_central PF08326.7 g100817.t1 - 0.026 12.6 0.1 0.031 12.4 0.1 1 1 0 0 1 1 1 0 Acetyl-CoA carboxylase, central region | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:63152-63656 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~63152-63656 PepSY_2 PF13670.1 g63896.t1 - 0.023 14.5 0 0.026 14.4 0 1.1 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:219940-220143 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~219940-220143 Histone_HNS PF00816.16 g124188.t1 - 2.5 8.6 7.9 8.6 6.9 5.4 1.8 1 1 0 1 1 1 0 H-NS histone family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1510826-1511137 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1510826-1511137 DUF538 PF04398.7 g117701.t1 - 0.054 13.7 0.1 0.073 13.3 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF538 | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:53756-54740 Augustus predicted protein sequence Tobacco scaffold2693_contigs=8~53756-54740 Herpes_UL3 PF03369.8 g25435.t1 - 0.087 12.7 0.2 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus UL3 protein | Ref_seq=scaffold695_contigs=1, transcript_loc=scaffold695_contigs=1:17052-17638 Augustus predicted protein sequence Tobacco scaffold695_contigs=1~17052-17638 Complex1_49kDa PF00346.14 g40745.t1 - 0.043 12.8 0 0.052 12.5 0 1.1 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:469135-469386 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~469135-469386 DUF1404 PF07185.6 g113971.t1 - 0.14 11.7 0.1 9.1 5.8 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1404) | Ref_seq=scaffold2640_contigs=8, transcript_loc=scaffold2640_contigs=8:20525-21165 Augustus predicted protein sequence Tobacco scaffold2640_contigs=8~20525-21165 Ribosomal_L39 PF00832.15 g112415.t1 - 0.7 9.4 3 19 4.8 0.2 2.4 2 0 0 2 2 2 0 Ribosomal L39 protein | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:107522-108214 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~107522-108214 Sad1_UNC PF07738.8 g109637.t1 - 0.018 14.8 0 0.022 14.5 0 1.2 1 0 0 1 1 1 0 Sad1 / UNC-like C-terminal | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:188588-190018 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~188588-190018 DUF3360 PF11840.3 g84045.t1 - 0.16 10.2 1 0.18 10.1 0.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3360) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:497424-498077 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~497424-498077 Pcc1 PF09341.5 g94685.t1 - 0.048 13.7 0.1 0.69 9.9 0 2.2 1 1 1 2 2 2 0 Transcription factor Pcc1 | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:299774-300073 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~299774-300073 DUF2782 PF11191.3 g93904.t1 - 0.15 12 0.2 0.18 11.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2782) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:101462-101689 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~101462-101689 Baculo_8kDa PF06096.6 g78060.t1 - 0.14 12 0 0.25 11.2 0 1.5 1 0 0 1 1 1 0 Baculoviridae 8.2 KDa protein | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:320679-322039 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~320679-322039 SH3BP5 PF05276.9 g68128.t1 - 0.049 12.9 0 0.049 12.9 0 1.2 1 0 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:102772-103146 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~102772-103146 Mito_fiss_reg PF05308.6 g50258.t1 - 0.067 12.5 0.5 0.089 12.1 0.4 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:243464-244524 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~243464-244524 RVP_2 PF08284.6 g56306.t1 - 0.0022 17.9 0 0.0028 17.5 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:414297-414769 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~414297-414769 zf-BED PF02892.10 g54610.t1 - 0.0000022 27.2 0.4 0.0000022 27.2 0.3 2.1 2 0 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:349256-351085 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~349256-351085 Phage_pRha PF09669.5 g103640.t1 - 0.11 12.8 0.2 1.4 9.3 0 2.3 2 0 0 2 2 2 0 Phage regulatory protein Rha (Phage_pRha) | Ref_seq=scaffold2311_contigs=3, transcript_loc=scaffold2311_contigs=3:12621-14670 Augustus predicted protein sequence Tobacco scaffold2311_contigs=3~12621-14670 Tropomyosin PF00261.15 g98928.t1 - 0.00098 18.2 3.5 0.0011 18 2 1.4 1 1 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:56141-56749 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~56141-56749 DUF3122 PF11320.3 g103864.t1 - 0.067 13.1 0 0.099 12.5 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:255268-255933 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~255268-255933 EzrA PF06160.7 g86692.t1 - 0.0013 16.9 4.6 0.0017 16.6 3.2 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:204635-206620 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~204635-206620 DUF1590 PF07629.6 g4705.t1 - 0.38 10.3 4.1 0.62 9.7 1.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1590) | Ref_seq=scaffold260_contigs=3, transcript_loc=scaffold260_contigs=3:20625-20906 Augustus predicted protein sequence Tobacco scaffold260_contigs=3~20625-20906 PMD PF10536.4 g35650.t1 - 0.043 12.8 0 0.065 12.2 0 1.4 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:279223-280802 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~279223-280802 DUF2577 PF10844.3 g39779.t1 - 0.1 12.6 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2577) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:217594-218061 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~217594-218061 RVT_2 PF07727.9 g130392.t1 - 0.004 16.1 0 0.0045 15.9 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold4291_contigs=1, transcript_loc=scaffold4291_contigs=1:484-744 Augustus predicted protein sequence Tobacco scaffold4291_contigs=1~484-744 Peptidase_S26 PF10502.4 g90340.t1 - 0.035 13.6 0 0.044 13.2 0 1.2 1 0 0 1 1 1 0 Signal peptidase, peptidase S26 | Ref_seq=scaffold1962_contigs=17, transcript_loc=scaffold1962_contigs=17:16750-17076 Augustus predicted protein sequence Tobacco scaffold1962_contigs=17~16750-17076 Sec20 PF03908.8 g14.t1 - 0.074 12.7 0 0.095 12.4 0 1.2 1 0 0 1 1 1 0 Sec20 | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:53514-54522 Augustus predicted protein sequence Tobacco scaffold1_contigs=5~53514-54522 DUF417 PF04224.7 g109224.t1 - 0.054 12.8 0 0.063 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:421314-421631 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~421314-421631 DUF2127 PF09900.4 g107299.t1 - 0.1 12.6 0.1 0.12 12.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1109443-1109673 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1109443-1109673 BTK PF00779.14 g25565.t1 - 0.0051 16.3 0.9 0.009 15.6 0.7 1.5 1 0 0 1 1 1 1 BTK motif | Ref_seq=scaffold700_contigs=3, transcript_loc=scaffold700_contigs=3:2722-2934 Augustus predicted protein sequence Tobacco scaffold700_contigs=3~2722-2934 Somatostatin PF03002.10 g94570.t1 - 0.15 11.6 0.6 0.28 10.8 0.4 1.4 1 0 0 1 1 1 0 Somatostatin/Cortistatin family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:71264-73079 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~71264-73079 Transgly_assoc PF04226.8 g126790.t1 - 0.83 9.7 3.9 1.3 9.1 2.7 1.3 1 0 0 1 1 1 0 Transglycosylase associated protein | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:3669-3902 Augustus predicted protein sequence Tobacco scaffold2805_contigs=1~3669-3902 DUF4106 PF13388.1 g118188.t1 - 3.3 6.5 8.6 3.9 6.3 6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:26620-26898 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~26620-26898 RVT_3 PF13456.1 g91602.t1 - 0.0023 17.6 0 0.0034 17.1 0 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:55156-55458 Augustus predicted protein sequence Tobacco scaffold1975_contigs=6~55156-55458 DUF3311 PF11755.3 g21563.t1 - 0.027 13.9 0.6 0.066 12.7 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:15897-16344 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~15897-16344 DUF86 PF01934.12 g114697.t1 - 0.069 12.7 0.1 0.1 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF86 | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:209977-210462 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~209977-210462 Thioredoxin_5 PF13743.1 g77020.t1 - 0.053 13 0.3 0.063 12.8 0.2 1.2 1 0 0 1 1 1 0 Thioredoxin | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:21607-22209 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~21607-22209 COXG PF06240.8 g26536.t1 - 0.046 13.3 0.1 0.054 13.1 0 1 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:26500-26700 Augustus predicted protein sequence Tobacco scaffold717_contigs=7~26500-26700 TLE_N PF03920.10 g34163.t1 - 0.0059 16.4 0.8 0.0098 15.7 0.5 1.3 1 0 0 1 1 1 1 Groucho/TLE N-terminal Q-rich domain | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:108663-109614 Augustus predicted protein sequence Tobacco scaffold846_contigs=10~108663-109614 QLQ PF08880.6 g56416.t1 - 0.6 9.5 9.8 22 4.5 5 2.8 2 1 0 2 2 2 0 QLQ | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:95130-95651 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~95130-95651 NYD-SP28_assoc PF14775.1 g51406.t1 - 0.083 12.6 1.4 0.18 11.4 1 1.6 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:247551-248150 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~247551-248150 SOBP PF15279.1 g105584.t1 - 8.5 6.6 6.3 11 6.2 4.4 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:84095-84860 Augustus predicted protein sequence Tobacco scaffold2357_contigs=7~84095-84860 Vac_Fusion PF02346.11 g39597.t1 - 0.11 11.8 0 0.19 11.1 0 1.5 1 1 0 1 1 1 0 Chordopoxvirus fusion protein | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:142776-142997 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~142776-142997 DUF1529 PF07485.6 g16327.t1 - 0.036 13.8 1.5 0.1 12.3 0.9 1.7 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1259) | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:62061-62579 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~62061-62579 RunxI PF08504.6 g111947.t1 - 0.12 12.8 1.7 0.22 11.9 1.2 1.5 1 0 0 1 1 1 0 Runx inhibition domain | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:154049-154426 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~154049-154426 Med2 PF11214.3 g56412.t1 - 0.12 12.4 1.4 0.16 12 1 1.2 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:92840-93172 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~92840-93172 tRNA_anti-codon PF01336.20 g70403.t1 - 0.075 12.9 0 0.15 11.9 0 1.4 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:452150-452398 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~452150-452398 7TMR-HDED PF07697.6 g67628.t1 - 0.093 12.4 0.5 0.15 11.8 0.3 1.3 1 0 0 1 1 1 0 7TM-HD extracellular | Ref_seq=scaffold1451_contigs=1, transcript_loc=scaffold1451_contigs=1:71742-73238 Augustus predicted protein sequence Tobacco scaffold1451_contigs=1~71742-73238 UBN2 PF14223.1 g68903.t1 - 0.000027 23.9 0 0.000033 23.6 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:86620-86880 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~86620-86880 Porin_2 PF02530.9 g41658.t1 - 0.11 11.5 1.1 0.12 11.4 0.8 1.1 1 0 0 1 1 1 0 Porin subfamily | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:151315-151653 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~151315-151653 DUF2712 PF10916.3 g104343.t1 - 0.053 13.4 0 0.064 13.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2712) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:581535-581912 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~581535-581912 Endothelin PF00322.12 g128033.t1 - 0.15 11.2 0.2 0.24 10.6 0.1 1.3 1 0 0 1 1 1 0 Endothelin family | Ref_seq=scaffold2847_contigs=1, transcript_loc=scaffold2847_contigs=1:2182-2385 Augustus predicted protein sequence Tobacco scaffold2847_contigs=1~2182-2385 Mating_C PF12737.2 g7502.t1 - 0.021 13.7 3.3 0.03 13.2 2.3 1.2 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:238586-239545 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~238586-239545 Etmic-2 PF06670.6 g10924.t1 - 0.022 13.4 0 0.022 13.4 0 1 1 0 0 1 1 1 0 Microneme protein Etmic-2 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:218529-221067 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~218529-221067 zf-RVT PF13966.1 g88383.t1 - 0.072 13.4 0.1 0.094 13 0 1.3 1 0 0 1 1 1 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:129617-129904 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~129617-129904 DUF1509 PF07420.6 g45917.t1 - 1.8 7.7 14.7 2.6 7.2 10.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) | Ref_seq=scaffold1052_contigs=4, transcript_loc=scaffold1052_contigs=4:38228-39587 Augustus predicted protein sequence Tobacco scaffold1052_contigs=4~38228-39587 DUF4025 PF13217.1 g25622.t1 - 0.082 12.7 8.6 2.1 8.2 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4025) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:123420-125387 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~123420-125387 UBN2_2 PF14227.1 g82283.t1 - 0.00017 21.1 0 0.00023 20.7 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:123703-124253 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~123703-124253 Herpes_UL87 PF03043.9 g58301.t1 - 0.59 8.4 2.6 0.68 8.2 1.8 1 1 0 0 1 1 1 0 Herpesvirus UL87 family | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:33387-34038 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~33387-34038 LssY_C PF14067.1 g114338.t1 - 0.035 13.1 0 0.044 12.7 0 1.1 1 0 0 1 1 1 0 LssY C-terminus | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:39036-39320 Augustus predicted protein sequence Tobacco scaffold2646_contigs=41~39036-39320 MHCassoc_trimer PF08831.5 g47582.t1 - 0.044 13.6 1.1 0.071 12.9 0.8 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:278218-278592 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~278218-278592 DUF4380 PF14315.1 g68459.t1 - 0.064 12.4 0.1 0.071 12.2 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:104428-104751 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~104428-104751 WIYLD PF10440.4 g46477.t1 - 0.13 12.2 0.1 13 5.7 0 2.3 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:523443-523808 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~523443-523808 CENP-Q PF13094.1 g69502.t1 - 0.01 15.8 2.3 0.011 15.8 1.6 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:220809-221198 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~220809-221198 zf-CCHC PF00098.18 g74345.t1 - 0.000003 26.8 2.7 0.0000075 25.6 1.8 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:15081-15579 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~15081-15579 COX2_TM PF02790.10 g47548.t1 - 1.7 8.6 7.4 0.27 11.1 1.4 2.4 2 2 1 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:208071-208622 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~208071-208622 Bd3614-deam PF14439.1 g113846.t1 - 0.11 12.4 0 0.11 12.4 0 1.1 1 0 0 1 1 1 0 Bd3614-like deaminase | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:574550-574762 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~574550-574762 DUF3753 PF12575.3 g87425.t1 - 0.08 12.7 1.5 13 5.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:55115-57793 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~55115-57793 DUF605 PF04652.11 g98276.t1 - 2.2 7.6 12.8 2.8 7.2 8.9 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2157_contigs=5, transcript_loc=scaffold2157_contigs=5:24440-25430 Augustus predicted protein sequence Tobacco scaffold2157_contigs=5~24440-25430 T2SG PF08334.6 g112756.t1 - 0.058 13.1 0 9.5 6 0 2.3 1 1 0 2 2 2 0 Type II secretion system (T2SS), protein G | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:63214-63706 Augustus predicted protein sequence Tobacco scaffold2618_contigs=26~63214-63706 Tmemb_cc2 PF10267.4 g58824.t1 - 0.027 13 0 0.03 12.9 0 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:42555-43277 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~42555-43277 Med9 PF07544.8 g36517.t1 - 0.0004 20 3.4 0.0016 18 0.1 2 2 0 0 2 2 2 2 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:156107-156418 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~156107-156418 DBD_Tnp_Mut PF03108.10 g17073.t1 - 0.00034 20.1 0 0.00048 19.6 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:404895-405301 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~404895-405301 Lentivirus_VIF PF05851.6 g82019.t1 - 0.12 11 0.2 0.16 10.6 0.1 1.2 1 0 0 1 1 1 0 Lentivirus virion infectivity factor (VIF) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:495016-497910 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~495016-497910 DUF3756 PF12581.3 g55888.t1 - 0.48 10.1 2.3 12 5.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3756) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:33501-33740 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~33501-33740 VID27 PF08553.5 g26672.t1 - 5.7 5 13.9 7.9 4.5 9.7 1.2 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:131094-134417 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~131094-134417 ATHILA PF03078.10 g44134.t1 - 0.00000049 28.7 0 0.00000066 28.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:67427-68266 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~67427-68266 DUF1985 PF09331.6 g21240.t1 - 0.000000022 34 0.1 0.000000034 33.3 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:46595-48794 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~46595-48794 SYCE1 PF15233.1 g122064.t1 - 0.071 13 3.7 0.18 11.7 2.6 1.7 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:139236-140455 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~139236-140455 Matrilin_ccoil PF10393.4 g130016.t1 - 0.022 14.1 0 0.035 13.4 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3327_contigs=1, transcript_loc=scaffold3327_contigs=1:1-650 Augustus predicted protein sequence Tobacco scaffold3327_contigs=1~1-650 UBN2_3 PF14244.1 g58872.t1 - 0.029 13.9 0 0.033 13.7 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:115683-116093 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~115683-116093 zf-Mss51 PF13824.1 g117438.t1 - 0.44 10.4 3.1 0.67 9.8 2.1 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:175109-175540 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~175109-175540 HAUS-augmin3 PF14932.1 g80410.t1 - 0.023 13.9 3.9 0.037 13.2 2.7 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:209133-210088 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~209133-210088 MSV199 PF10553.4 g115420.t1 - 0.036 13.9 0.4 0.042 13.7 0.2 1.1 1 0 0 1 1 1 0 MSV199 domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:312606-312920 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~312606-312920 FOLN PF09289.5 g51610.t1 - 0.15 11.9 0.1 0.15 11.9 0.1 1.7 2 0 0 2 2 2 0 Follistatin/Osteonectin-like EGF domain | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:277701-278411 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~277701-278411 Rubella_Capsid PF05750.6 g82482.t1 - 0.12 11.7 1.4 0.15 11.4 1 1.2 1 0 0 1 1 1 0 Rubella capsid protein | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:73673-74164 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~73673-74164 Toxin_48 PF15528.1 g99667.t1 - 0.11 12.3 0.1 0.11 12.3 0 1.1 1 0 0 1 1 1 0 Putative toxin 48 | Ref_seq=scaffold2176_contigs=19, transcript_loc=scaffold2176_contigs=19:30575-30793 Augustus predicted protein sequence Tobacco scaffold2176_contigs=19~30575-30793 Transposase_28 PF04195.7 g127941.t1 - 0.011 15 0 0.019 14.2 0 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2842_contigs=1, transcript_loc=scaffold2842_contigs=1:51500-52759 Augustus predicted protein sequence Tobacco scaffold2842_contigs=1~51500-52759 DUF2631 PF10939.3 g6825.t1 - 0.18 11.6 2.1 12 5.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:45045-45558 Augustus predicted protein sequence Tobacco scaffold304_contigs=1~45045-45558 DUF640 PF04852.7 g50595.t1 - 0.0068 16.5 0.6 0.0095 16.1 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF640) | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:39538-40317 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~39538-40317 Elong_Iki1 PF10483.4 g10422.t1 - 0.014 14.7 7.1 0.018 14.4 4.9 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:322618-323208 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~322618-323208 Abhydrolase_8 PF06259.7 g68624.t1 - 0.1 12.1 0 0.15 11.5 0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:639080-639674 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~639080-639674 Patched PF02460.13 g130432.t1 - 0.26 9.1 3.7 0.27 9.1 2.6 1 1 0 0 1 1 1 0 Patched family | Ref_seq=scaffold4468_contigs=1, transcript_loc=scaffold4468_contigs=1:1-737 Augustus predicted protein sequence Tobacco scaffold4468_contigs=1~1-737 UBN2 PF14223.1 g6799.t1 - 0.025 14.3 0.1 0.033 13.9 0.1 1.3 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:8626-9131 Augustus predicted protein sequence Tobacco scaffold304_contigs=1~8626-9131 DUF3080 PF11279.3 g76998.t1 - 0.088 11.9 0 0.099 11.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:47716-48171 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~47716-48171 PSDC PF12588.3 g23857.t1 - 0.076 12.6 0.1 0.2 11.2 0.1 1.6 1 1 0 1 1 1 0 Phophatidylserine decarboxylase | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:239530-240024 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~239530-240024 GerPB PF10803.3 g20577.t1 - 0.033 13.9 0.4 0.053 13.2 0.3 1.4 1 0 0 1 1 1 0 Spore germination GerPB | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:498941-499171 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~498941-499171 Choline_transpo PF04515.7 g120946.t1 - 0.02 13.6 0.6 0.027 13.2 0.4 1.2 1 0 0 1 1 1 0 Plasma-membrane choline transporter | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:77630-79934 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~77630-79934 LNP1 PF15419.1 g86602.t1 - 0.048 13.7 0.7 0.055 13.5 0.5 1.1 1 0 0 1 1 1 0 Leukemia NUP98 fusion partner 1 | Ref_seq=scaffold1852_contigs=2, transcript_loc=scaffold1852_contigs=2:49444-49802 Augustus predicted protein sequence Tobacco scaffold1852_contigs=2~49444-49802 Hyd_WA PF06462.7 g69972.t1 - 0.028 14 0.4 0.057 13 0.3 1.5 1 0 0 1 1 1 0 Propeller | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:6341-6703 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~6341-6703 Rhabdo_glycop PF00974.13 g42900.t1 - 0.014 13.6 0.7 0.015 13.5 0.5 1 1 0 0 1 1 1 0 Rhabdovirus spike glycoprotein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:843087-843362 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~843087-843362 C2 PF00168.25 g70543.t1 - 0.0014 18.4 0 1.4 8.8 0 2.1 1 1 1 2 2 2 2 C2 domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:307996-308582 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~307996-308582 DUF4283 PF14111.1 g59360.t1 - 3.2E-010 39.2 1.1 0.00000075 28.3 0 2.7 1 1 2 3 3 3 2 Domain of unknown function (DUF4283) | Ref_seq=scaffold1290_contigs=9, transcript_loc=scaffold1290_contigs=9:118729-119903 Augustus predicted protein sequence Tobacco scaffold1290_contigs=9~118729-119903 DUF4608 PF15381.1 g103082.t1 - 0.54 10.4 3.8 5.5 7.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2289_contigs=8, transcript_loc=scaffold2289_contigs=8:24-314 Augustus predicted protein sequence Tobacco scaffold2289_contigs=8~24-314 UBN2_3 PF14244.1 g115931.t1 - 0.067 12.7 0 0.074 12.6 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:280873-282940 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~280873-282940 Ig_J_chain PF15097.1 g31456.t1 - 0.0043 16.6 0.6 0.0064 16 0.4 1.3 1 0 0 1 1 1 1 Immunoglobulin J chain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:135705-136208 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~135705-136208 DUF2026 PF09641.5 g95406.t1 - 0.023 14 0.3 0.027 13.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:450705-451103 Augustus predicted protein sequence Tobacco scaffold2057_contigs=11~450705-451103 DBD_Tnp_Mut PF03108.10 g113255.t1 - 7.3E-009 35 0.1 9.8E-009 34.6 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:197471-197920 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~197471-197920 UBN2 PF14223.1 g105609.t1 - 0.038 13.7 0.7 0.038 13.7 0.5 1.7 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:29506-30135 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~29506-30135 ATHILA PF03078.10 g43346.t1 - 0.0045 15.6 0.1 0.0045 15.6 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:32721-32927 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~32721-32927 Tom22 PF04281.8 g59100.t1 - 2.8 7.4 5.4 2.9 7.4 3.7 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 | Ref_seq=scaffold1280_contigs=6, transcript_loc=scaffold1280_contigs=6:82573-82845 Augustus predicted protein sequence Tobacco scaffold1280_contigs=6~82573-82845 PolC_DP2 PF03833.8 g24236.t1 - 0.011 13.4 0.7 0.012 13.3 0.5 1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:286041-286316 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~286041-286316 DUF1447 PF07288.6 g40576.t1 - 0.13 12 2 0.23 11.2 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1447) | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:41106-41809 Augustus predicted protein sequence Tobacco scaffold979_contigs=3~41106-41809 NESP55 PF06390.7 g129131.t1 - 2.2 7.5 5.5 2.3 7.5 1.3 2 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2918_contigs=1, transcript_loc=scaffold2918_contigs=1:11167-11651 Augustus predicted protein sequence Tobacco scaffold2918_contigs=1~11167-11651 DUF1151 PF06625.6 g126229.t1 - 0.017 14.8 0.2 7.1 6.3 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1151) | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:97862-98627 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~97862-98627 RNase_H2-Ydr279 PF09468.5 g51349.t1 - 0.051 12.7 4.4 0.06 12.5 3 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:90273-91035 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~90273-91035 Troponin-I_N PF11636.3 g46796.t1 - 1.9 8.2 5.5 5.8 6.6 3.8 1.8 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:160440-161167 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~160440-161167 TOM20_plant PF06552.7 g110723.t1 - 0.11 12 0.1 0.18 11.3 0 1.4 1 1 0 1 1 1 0 Plant specific mitochondrial import receptor subunit TOM20 | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:321478-322354 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~321478-322354 Mnd1 PF03962.10 g110664.t1 - 0.009 15.6 2.4 0.012 15.2 1.7 1.2 1 0 0 1 1 1 1 Mnd1 family | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:208032-208328 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~208032-208328 BatD PF13584.1 g74110.t1 - 0.046 12.3 0.1 0.051 12.1 0.1 1.1 1 0 0 1 1 1 0 Oxygen tolerance | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:559055-559471 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~559055-559471 MULE PF10551.4 g36459.t1 - 0.0000001 32 0.2 0.00000021 31 0.1 1.5 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:141494-142628 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~141494-142628 DUF1682 PF07946.9 g11102.t1 - 0.042 12.6 6.2 0.042 12.7 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:79585-80172 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~79585-80172 YlqD PF11068.3 g38159.t1 - 0.041 13.9 0.9 0.048 13.6 0.6 1.1 1 0 0 1 1 1 0 YlqD protein | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:305502-305771 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~305502-305771 CCDC50_N PF15295.1 g437.t1 - 0.0026 17.6 4 0.0031 17.4 2.7 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 50 N-terminus | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:157338-157634 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~157338-157634 DUF1832 PF08870.6 g110385.t1 - 0.029 14 0 7.9 6.2 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF1832) | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:35205-36415 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~35205-36415 ATHILA PF03078.10 g119206.t1 - 0.0037 15.9 0 0.54 8.7 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:107388-108280 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~107388-108280 Prolamin_like PF05617.6 g118241.t1 - 0.034 14.2 1.5 0.047 13.8 0.6 1.5 1 1 0 1 1 1 0 Prolamin-like | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:170876-171938 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~170876-171938 DNA_topoisoIV PF00521.15 g115322.t1 - 0.18 10.5 1.5 0.19 10.5 1.1 1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:73428-73658 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~73428-73658 RVT_3 PF13456.1 g86649.t1 - 0.000002 27.5 0 0.0000036 26.6 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:102870-106717 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~102870-106717 MRAP PF15183.1 g29313.t1 - 0.025 14.1 0 0.045 13.3 0 1.4 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:226130-226637 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~226130-226637 DUF1843 PF08898.5 g26676.t1 - 0.13 12.3 0.3 0.19 11.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:139388-139783 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~139388-139783 Toxin_27 PF08099.6 g85363.t1 - 0.039 13.8 1.1 0.11 12.3 0.5 1.9 2 0 0 2 2 2 0 Scorpion calcine family | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:295813-296439 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~295813-296439 MAP65_ASE1 PF03999.7 g120678.t1 - 4.3 5.8 5.7 5.8 5.3 3.9 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:42940-43866 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~42940-43866 LRR_4 PF12799.2 g96254.t1 - 1.5 8.5 5.1 3.9 7.1 0.9 2.5 1 1 1 2 2 2 0 Leucine Rich repeats (2 copies) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:235005-235331 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~235005-235331 Med19 PF10278.4 g82223.t1 - 0.11 12.1 0 0.12 12 0 1.1 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:108701-109071 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~108701-109071 DUF4448 PF14610.1 g106419.t1 - 0.13 11.7 0 0.15 11.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4448) | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:149073-150170 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~149073-150170 PhnI PF05861.7 g107335.t1 - 0.023 13.2 0 0.025 13.1 0 1.1 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1186908-1187372 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1186908-1187372 DBD_Tnp_Mut PF03108.10 g122382.t1 - 0.000000097 31.4 0.1 0.00000014 30.9 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:42374-43428 Augustus predicted protein sequence Tobacco scaffold2745_contigs=7~42374-43428 MobB PF03205.9 g73838.t1 - 0.066 12.9 0 0.075 12.7 0 1.2 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:24347-24604 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~24347-24604 BCMA-Tall_bind PF09257.5 g83024.t1 - 0.54 10.2 4.7 1.4 8.9 3.3 1.7 1 0 0 1 1 1 0 BCMA, TALL-1 binding | Ref_seq=scaffold1777_contigs=8, transcript_loc=scaffold1777_contigs=8:29618-29902 Augustus predicted protein sequence Tobacco scaffold1777_contigs=8~29618-29902 RVT_3 PF13456.1 g86674.t1 - 0.13 12 0 0.24 11.2 0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:161533-162545 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~161533-162545 PhoU PF01895.14 g90894.t1 - 0.011 16.2 0.3 0.012 16 0.2 1.1 1 0 0 1 1 1 0 PhoU domain | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:96557-96757 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~96557-96757 GSK-3_bind PF05350.7 g23838.t1 - 0.16 11.3 3.5 0.18 11.1 2.4 1 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:197479-197796 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~197479-197796 HALZ PF02183.13 g75206.t1 - 0.073 12.7 0.6 0.23 11.2 0.4 1.9 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:172667-173712 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~172667-173712 Peptidase_C48 PF02902.14 g124018.t1 - 0.00000004 33.1 0.1 0.00000004 33.1 0.1 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1156566-1156946 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1156566-1156946 DUF1228 PF06779.9 g26734.t1 - 0.1 12.6 0 0.15 12 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1228) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:227576-229528 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~227576-229528 DUF3987 PF13148.1 g45985.t1 - 0.013 14 0.1 0.013 14 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:208004-208324 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~208004-208324 DUF4540 PF15073.1 g29868.t1 - 0.028 14.9 0.1 0.034 14.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4540) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:294903-295226 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~294903-295226 ATHILA PF03078.10 g47325.t1 - 0.021 13.3 0 0.024 13.2 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1094_contigs=5, transcript_loc=scaffold1094_contigs=5:78363-79307 Augustus predicted protein sequence Tobacco scaffold1094_contigs=5~78363-79307 eIF-4B PF06273.6 g88635.t1 - 0.034 12.8 1.4 0.042 12.6 1 1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:44513-44821 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~44513-44821 Metallothio_Cad PF07846.6 g116112.t1 - 0.023 14.5 1.8 0.12 12.3 0.2 2.2 2 0 0 2 2 2 0 Metallothionein family | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:666096-666838 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~666096-666838 Ssu72 PF04722.8 g71712.t1 - 0.021 14.1 0.3 0.023 14 0.2 1 1 0 0 1 1 1 0 Ssu72-like protein | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:318681-318935 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~318681-318935 bZIP_2 PF07716.10 g11917.t1 - 1.7 8.5 4.9 0.32 10.8 0.6 1.8 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold417_contigs=2, transcript_loc=scaffold417_contigs=2:47976-48305 Augustus predicted protein sequence Tobacco scaffold417_contigs=2~47976-48305 YjeF_N PF03853.10 g44109.t1 - 0.14 11.7 0 0.18 11.3 0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:31702-32028 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~31702-32028 OapA_N PF08525.6 g15409.t1 - 0.05 13.3 0.2 0.11 12.2 0.1 1.6 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:261578-261985 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~261578-261985 Trypan_PARP PF05887.6 g16942.t1 - 1.6 8.5 6.3 1.6 8.5 4.4 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:71546-71746 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~71546-71746 RVT_3 PF13456.1 g115194.t1 - 0.000017 24.5 0.5 0.000061 22.7 0.3 1.8 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:182477-182821 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~182477-182821 MutS_III PF05192.13 g3926.t1 - 0.0041 16.9 0.4 0.0056 16.4 0.3 1.1 1 0 0 1 1 1 1 MutS domain III | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:92464-93398 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~92464-93398 COX2 PF00116.15 g4265.t1 - 0.098 12.4 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:283268-286713 Augustus predicted protein sequence Tobacco scaffold255_contigs=10~283268-286713 DUF722 PF05263.6 g97665.t1 - 0.6 10.2 3.4 0.48 10.5 0.3 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF722) | Ref_seq=scaffold2143_contigs=4, transcript_loc=scaffold2143_contigs=4:57133-57708 Augustus predicted protein sequence Tobacco scaffold2143_contigs=4~57133-57708 zf-CCHC PF00098.18 g3212.t1 - 0.028 14.3 0.4 0.042 13.7 0.3 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:27220-27603 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~27220-27603 DUF1602 PF07673.9 g9965.t1 - 0.0012 18.2 0.1 0.0039 16.6 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1602) | Ref_seq=scaffold382_contigs=18, transcript_loc=scaffold382_contigs=18:110467-110766 Augustus predicted protein sequence Tobacco scaffold382_contigs=18~110467-110766 ATHILA PF03078.10 g92349.t1 - 0.000027 22.9 0 0.000028 22.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:334564-334899 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~334564-334899 DUF2303 PF10065.4 g42005.t1 - 0.067 12 2.1 0.11 11.3 1.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:12354-12755 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~12354-12755 LEAP-2 PF07359.6 g118637.t1 - 0.015 14.9 2.4 0.02 14.5 1.6 1.4 1 1 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:292950-294667 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~292950-294667 YdjO PF14169.1 g26464.t1 - 0.0015 17.8 0.1 0.0027 17.1 0.1 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:124391-125776 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~124391-125776 UBN2 PF14223.1 g106229.t1 - 0.013 15.2 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:188257-189600 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~188257-189600 DUF2892 PF11127.3 g79702.t1 - 0.017 14.9 0.7 5.3 6.9 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:43648-44743 Augustus predicted protein sequence Tobacco scaffold1701_contigs=25~43648-44743 MCC-bdg_PDZ PF10506.4 g39789.t1 - 0.1 12.4 0.8 0.1 12.4 0.6 1.9 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:231085-231351 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~231085-231351 DUF1289 PF06945.8 g18423.t1 - 0.052 13 1.2 0.15 11.5 0.1 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1289) | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:62507-62806 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~62507-62806 DUF2933 PF11666.3 g114037.t1 - 0.21 11.1 0.5 0.39 10.3 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2933) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:128985-129671 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~128985-129671 Fb_signal PF08341.6 g13771.t1 - 0.022 14.7 0.7 0.045 13.7 0.5 1.5 1 0 0 1 1 1 0 Fibronectin-binding protein signal sequence | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:62615-63010 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~62615-63010 Trypan_PARP PF05887.6 g75607.t1 - 1.7 8.4 18.5 2.8 7.7 12.8 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:69589-69993 Augustus predicted protein sequence Tobacco scaffold1576_contigs=4~69589-69993 Pigment_DH PF06324.6 g122156.t1 - 0.058 12.6 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Pigment-dispersing hormone (PDH) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:375633-376676 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~375633-376676 TT_ORF1 PF02956.9 g80381.t1 - 0.12 10.8 4.8 0.16 10.3 3.3 1.1 1 0 0 1 1 1 0 TT viral orf 1 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:171945-172832 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~171945-172832 DUF1075 PF06388.6 g85616.t1 - 0.1 12.2 2 0.31 10.6 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:180916-181431 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~180916-181431 DUF2689 PF10894.3 g106037.t1 - 0.14 11.9 0 0.22 11.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2689) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1530450-1531047 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~1530450-1531047 DUF612 PF04747.7 g45225.t1 - 0.0053 15.7 7.4 0.0067 15.3 5.2 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF612 | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:102604-103328 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~102604-103328 GHL15 PF14885.1 g111299.t1 - 0.14 12.4 0.4 0.14 12.4 0.3 2 3 0 0 3 3 3 0 Hypothetical glycosyl hydrolase family 15 | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:60089-60996 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~60089-60996 Orthopox_C10L PF07020.6 g94088.t1 - 0.031 14.8 0.3 0.064 13.8 0.2 1.6 1 0 0 1 1 1 0 Orthopoxvirus C10L protein | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:220684-221178 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~220684-221178 TFIIA PF03153.8 g11702.t1 - 1 9.1 5 1.2 8.9 3.5 1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:92266-93937 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~92266-93937 DUF1682 PF07946.9 g121677.t1 - 0.00045 19.1 24 0.00054 18.9 16.6 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2735_contigs=2, transcript_loc=scaffold2735_contigs=2:20082-20516 Augustus predicted protein sequence Tobacco scaffold2735_contigs=2~20082-20516 Fer4_12 PF13353.1 g95606.t1 - 0.028 14.5 0.1 0.034 14.2 0 1.2 1 0 0 1 1 1 0 4Fe-4S single cluster domain | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:129523-130014 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~129523-130014 Dec-1 PF04624.9 g124624.t1 - 0.002 17.7 0.8 0.0034 16.9 0.6 1.3 1 0 0 1 1 1 1 Dec-1 repeat | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:149777-149998 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~149777-149998 DUF4140 PF13600.1 g62174.t1 - 0.29 11.5 2.1 0.49 10.8 1.4 1.5 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:114619-115146 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~114619-115146 HTH_8 PF02954.14 g104317.t1 - 0.12 11.9 0.3 0.4 10.2 0.1 2.1 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:494369-495214 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~494369-495214 ATHILA PF03078.10 g100928.t1 - 0.0003 19.5 0 0.00032 19.4 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:357137-357592 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~357137-357592 MUG2_C PF08593.5 g74033.t1 - 0.74 10 3.5 2.2 8.5 0.1 2.6 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:428887-429246 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~428887-429246 HALZ PF02183.13 g57468.t1 - 0.042 13.5 0.4 0.17 11.6 0.3 2 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:232019-232450 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~232019-232450 MULE PF10551.4 g39110.t1 - 0.0000057 26.4 0 0.00001 25.6 0 1.4 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:338088-338964 Augustus predicted protein sequence Tobacco scaffold948_contigs=6~338088-338964 CCDC144C PF14915.1 g50015.t1 - 0.013 14.4 3.1 0.022 13.7 2.1 1.4 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:53757-54287 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~53757-54287 zf-BED PF02892.10 g78195.t1 - 0.0043 16.7 0.4 0.0085 15.8 0.3 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1641_contigs=4, transcript_loc=scaffold1641_contigs=4:27413-29621 Augustus predicted protein sequence Tobacco scaffold1641_contigs=4~27413-29621 PH_11 PF15413.1 g89655.t1 - 0.068 13.4 0.2 0.22 11.7 0.2 1.8 1 1 0 1 1 1 0 Pleckstrin homology domain | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:57888-58417 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~57888-58417 Melibiase PF02065.13 g51722.t1 - 0.16 10.6 0.1 6.7 5.2 0 2 1 1 1 2 2 2 0 Melibiase | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:71121-72235 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~71121-72235 Phostensin_N PF13916.1 g7881.t1 - 0.019 14.9 0 0.032 14.2 0 1.3 1 0 0 1 1 1 0 PP1-regulatory protein, Phostensin N-terminal | Ref_seq=scaffold324_contigs=5, transcript_loc=scaffold324_contigs=5:21811-22457 Augustus predicted protein sequence Tobacco scaffold324_contigs=5~21811-22457 TROVE PF05731.6 g62410.t1 - 0.048 12.4 0.3 0.056 12.1 0.2 1.1 1 0 0 1 1 1 0 TROVE domain | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:150612-151076 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~150612-151076 YyzF PF14116.1 g106922.t1 - 0.022 14.6 0.7 0.062 13.2 0.2 1.9 2 0 0 2 2 2 0 YyzF-like protein | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:212902-213348 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~212902-213348 RVT_3 PF13456.1 g53418.t1 - 0.00054 19.6 0.1 0.00098 18.8 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:281173-281469 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~281173-281469 ATHILA PF03078.10 g29160.t1 - 0.000000094 31 0 0.0000001 30.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:209782-210099 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~209782-210099 Sigma70_ner PF04546.8 g13726.t1 - 0.53 9.8 7.9 0.021 14.4 1.6 1.6 2 0 0 2 2 2 0 Sigma-70, non-essential region | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:36654-37394 Augustus predicted protein sequence Tobacco scaffold453_contigs=2~36654-37394 Laminin_II PF06009.7 g85646.t1 - 0.073 12.8 1.4 0.12 12.1 0.4 1.7 1 1 1 2 2 2 0 Laminin Domain II | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:238801-239629 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~238801-239629 GRP PF07172.6 g15281.t1 - 0.71 10.3 6.2 0.94 9.9 4.3 1.2 1 0 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:55402-57629 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~55402-57629 RNase_H2-Ydr279 PF09468.5 g87685.t1 - 0.099 11.8 3.3 0.11 11.6 2.3 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:74994-75368 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~74994-75368 Phage_int_SAM_5 PF13102.1 g26305.t1 - 0.1 12.6 0.2 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Phage integrase SAM-like domain | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:22550-23019 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~22550-23019 FliG_C PF01706.11 g106939.t1 - 0.058 13.3 0 0.11 12.4 0 1.4 1 1 0 1 1 1 0 FliG C-terminal domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:31658-32136 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~31658-32136 Ribosomal_L19e PF01280.15 g61491.t1 - 0.11 12.2 1.8 0.13 11.9 1.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L19e | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:281840-282130 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~281840-282130 Vir_act_alpha_C PF10400.4 g47627.t1 - 0.0039 17.5 0.1 0.0045 17.3 0.1 1.1 1 0 0 1 1 1 1 Virulence activator alpha C-term | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:367504-367749 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~367504-367749 DUF4219 PF13961.1 g4964.t1 - 0.000036 23 0.4 0.000054 22.5 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold269_contigs=8, transcript_loc=scaffold269_contigs=8:40944-41186 Augustus predicted protein sequence Tobacco scaffold269_contigs=8~40944-41186 Peptidase_C3G PF12381.3 g46980.t1 - 0.1 11.8 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Tungro spherical virus-type peptidase | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:110951-111211 Augustus predicted protein sequence Tobacco scaffold1083_contigs=11~110951-111211 DUF898 PF05987.8 g81621.t1 - 0.1 11.4 0.1 0.13 11.1 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) | Ref_seq=scaffold1731_contigs=1, transcript_loc=scaffold1731_contigs=1:16176-17604 Augustus predicted protein sequence Tobacco scaffold1731_contigs=1~16176-17604 UBN2_2 PF14227.1 g81797.t1 - 0.000049 22.8 0.3 0.00036 20 0.3 1.9 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:149029-149304 Augustus predicted protein sequence Tobacco scaffold1736_contigs=8~149029-149304 Dsh_C PF12316.3 g98262.t1 - 0.071 13.2 1.2 0.084 12.9 0.9 1.1 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:28506-28817 Augustus predicted protein sequence Tobacco scaffold2156_contigs=2~28506-28817 Endonuc_Holl PF10107.4 g110963.t1 - 0.00029 20.5 0.5 0.00039 20.1 0.3 1.2 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:46849-47542 Augustus predicted protein sequence Tobacco scaffold2571_contigs=16~46849-47542 zf-CCHC PF00098.18 g55592.t1 - 0.0029 17.4 0.3 0.0043 16.9 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:9456-9857 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~9456-9857 RNA_pol_Rbc25 PF08292.7 g54013.t1 - 0.068 13.3 5.4 0.073 13.2 3.7 1.1 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:8407-9272 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~8407-9272 zf-CCHC PF00098.18 g97238.t1 - 0.071 13 0.5 0.13 12.2 0.3 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:71812-72054 Augustus predicted protein sequence Tobacco scaffold2130_contigs=1~71812-72054 DUF2215 PF10225.4 g2621.t1 - 0.0022 17.4 0.2 0.0025 17.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:29846-30271 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~29846-30271 DUF4390 PF14334.1 g53682.t1 - 0.061 12.5 0 0.082 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4390) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:93277-93570 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~93277-93570 DUF955 PF06114.8 g93158.t1 - 0.093 12.4 0 0.13 12 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF955) | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:87718-88215 Augustus predicted protein sequence Tobacco scaffold2008_contigs=4~87718-88215 DUF3584 PF12128.3 g77930.t1 - 0.00066 17.1 4.9 0.00077 16.9 3.4 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:62370-63168 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~62370-63168 SWIM PF04434.12 g104066.t1 - 0.000014 24.4 0.1 0.000031 23.3 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:255509-256365 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~255509-256365 PocR PF10114.4 g106293.t1 - 0.017 14.3 0 0.023 13.8 0 1.3 1 0 0 1 1 1 0 Sensory domain found in PocR | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:106622-108302 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~106622-108302 S_locus_glycop PF00954.15 g115442.t1 - 0.069 13.4 0.1 0.14 12.4 0 1.5 2 0 0 2 2 2 0 S-locus glycoprotein family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:372049-372661 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~372049-372661 DUF3079 PF11278.3 g118849.t1 - 0.097 12.2 0.9 0.19 11.3 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3079) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:112604-112963 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~112604-112963 ATHILA PF03078.10 g109589.t1 - 0.026 13.1 0 0.027 13 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:107505-107813 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~107505-107813 PetN PF03742.9 g44049.t1 - 1.1 8.8 3.6 7.6 6.1 0.1 2.9 3 0 0 3 3 3 0 PetN | Ref_seq=scaffold1032_contigs=3, transcript_loc=scaffold1032_contigs=3:59572-59862 Augustus predicted protein sequence Tobacco scaffold1032_contigs=3~59572-59862 SM-ATX PF14438.1 g71652.t1 - 0.094 12.6 0 0.1 12.5 0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:221331-222144 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~221331-222144 K_channel_TID PF07941.6 g48334.t1 - 0.0089 16.2 1.4 0.011 15.9 1 1.1 1 0 0 1 1 1 1 Potassium channel Kv1.4 tandem inactivation domain | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:428010-428240 Augustus predicted protein sequence Tobacco scaffold1107_contigs=16~428010-428240 Toxin-JAB1 PF15659.1 g117982.t1 - 0.095 12.5 0.2 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:182701-183425 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~182701-183425 Vault PF01505.13 g119674.t1 - 0.094 12.7 0.1 0.23 11.5 0 1.6 2 0 0 2 2 2 0 Major Vault Protein repeat | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:204308-206117 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~204308-206117 SSDP PF04503.8 g54064.t1 - 0.018 14.7 0.8 0.019 14.7 0.6 1.2 1 0 0 1 1 1 0 Single-stranded DNA binding protein, SSDP | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:188501-190603 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~188501-190603 Terminase_5 PF06056.7 g3629.t1 - 0.14 11.7 1.4 1.5 8.4 0.1 2.3 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:134005-135228 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~134005-135228 PocR PF10114.4 g112554.t1 - 0.12 11.4 0 0.14 11.3 0 1.1 1 0 0 1 1 1 0 Sensory domain found in PocR | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:158331-158594 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~158331-158594 Rot1 PF10681.4 g54055.t1 - 0.088 12.1 0 0.092 12 0 1.3 1 1 0 1 1 1 0 Chaperone for protein-folding within the ER, fungal | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:123576-126583 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~123576-126583 Dynactin_p62 PF05502.8 g29136.t1 - 0.11 11.2 0 0.14 10.9 0 1.1 1 0 0 1 1 1 0 Dynactin p62 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:180195-182303 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~180195-182303 YdjO PF14169.1 g988.t1 - 0.011 15.1 0.1 0.021 14.2 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold94_contigs=2, transcript_loc=scaffold94_contigs=2:45198-45984 Augustus predicted protein sequence Tobacco scaffold94_contigs=2~45198-45984 NPV_P10 PF05531.7 g75156.t1 - 0.024 14.8 0.2 0.049 13.8 0.1 1.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:76106-77016 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~76106-77016 DUF4651 PF15513.1 g64829.t1 - 0.099 12.1 0 0.15 11.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:81679-81960 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~81679-81960 DBD_Tnp_Mut PF03108.10 g46977.t1 - 0.000000017 33.9 0.7 0.000000023 33.4 0.5 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:97092-97625 Augustus predicted protein sequence Tobacco scaffold1083_contigs=11~97092-97625 Daxx PF03344.10 g119723.t1 - 0.48 8.8 15.8 0.52 8.7 11 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:15808-16359 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~15808-16359 DUF641 PF04859.7 g29294.t1 - 0.0022 17.7 1.4 0.0036 17 0.9 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:174524-175102 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~174524-175102 T4_deiodinase PF00837.12 g33630.t1 - 0.051 12.5 0 0.59 9 0 2 1 1 1 2 2 2 0 Iodothyronine deiodinase | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:243647-243946 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~243647-243946 DUF3637 PF12337.3 g119838.t1 - 0.0055 16.6 0.2 0.0073 16.2 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3637) | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:319821-320216 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~319821-320216 RWP-RK PF02042.10 g85036.t1 - 0.09 12.6 0 0.14 11.9 0 1.3 1 0 0 1 1 1 0 RWP-RK domain | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:73286-73870 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~73286-73870 RNA_pol_3_Rpc31 PF11705.3 g100040.t1 - 0.67 9.8 5.5 0.66 9.8 3.8 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:374590-374966 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~374590-374966 Arc PF03869.9 g113754.t1 - 0.067 12.8 0.5 0.26 10.9 0.1 2 2 0 0 2 2 2 0 Arc-like DNA binding domain | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:366802-367451 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~366802-367451 DUF1846 PF08903.6 g88495.t1 - 0.13 10.6 0.1 0.14 10.5 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) | Ref_seq=scaffold1927_contigs=30, transcript_loc=scaffold1927_contigs=30:339422-339622 Augustus predicted protein sequence Tobacco scaffold1927_contigs=30~339422-339622 PLA2_inh PF02988.10 g76367.t1 - 0.012 15.9 0.1 0.015 15.6 0.1 1.2 1 0 0 1 1 1 0 Phospholipase A2 inhibitor | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:46625-47133 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~46625-47133 SnoaL_2 PF12680.2 g129921.t1 - 0.015 15.6 0.1 6.1 7.3 0 2.1 2 0 0 2 2 2 0 SnoaL-like domain | Ref_seq=scaffold3205_contigs=1, transcript_loc=scaffold3205_contigs=1:3222-3703 Augustus predicted protein sequence Tobacco scaffold3205_contigs=1~3222-3703 ATHILA PF03078.10 g75860.t1 - 0.0059 15.2 0 0.007 15 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:35551-36100 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~35551-36100 Antimicrobial11 PF08106.6 g81645.t1 - 0.0059 16.3 1.7 0.0059 16.3 1.2 1.8 2 0 0 2 2 2 1 Formaecin family | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:38013-38658 Augustus predicted protein sequence Tobacco scaffold1732_contigs=8~38013-38658 Pox_A_type_inc PF04508.7 g69013.t1 - 0.015 14.9 0.1 0.068 12.9 0.1 2.1 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:298721-299350 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~298721-299350 DUF4283 PF14111.1 g109151.t1 - 0.00000098 27.9 0.1 0.0000014 27.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:127686-129754 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~127686-129754 DUF16 PF01519.11 g93928.t1 - 0.054 13.7 0.3 0.068 13.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:176530-176820 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~176530-176820 DREPP PF05558.7 g59514.t1 - 0.035 13.9 2 0.045 13.6 1.4 1.2 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:238445-238870 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~238445-238870 SinI PF08671.5 g51468.t1 - 0.085 12.2 1.8 1.8 8 0 2.4 2 0 0 2 2 2 0 Anti-repressor SinI | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:103397-104509 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~103397-104509 C1_1 PF00130.17 g34984.t1 - 0.17 11.6 5.9 1.7 8.4 4.1 2.6 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold864_contigs=13, transcript_loc=scaffold864_contigs=13:163645-164360 Augustus predicted protein sequence Tobacco scaffold864_contigs=13~163645-164360 YqfQ PF14181.1 g13303.t1 - 1.3 8.9 4.7 1.7 8.6 3.3 1.1 1 0 0 1 1 1 0 YqfQ-like protein | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:472235-472516 Augustus predicted protein sequence Tobacco scaffold443_contigs=11~472235-472516 DUF1075 PF06388.6 g114237.t1 - 0.016 14.8 2.7 0.018 14.6 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:348181-348486 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~348181-348486 mono-CXXC PF15626.1 g79190.t1 - 0.91 9.5 3.1 1.4 8.8 1.8 1.6 1 1 0 1 1 1 0 single CXXC unit | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:159842-161454 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~159842-161454 MRVI1 PF05781.7 g80637.t1 - 0.0083 14.5 0.4 0.0098 14.3 0.3 1.1 1 0 0 1 1 1 1 MRVI1 protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:5758-6243 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~5758-6243 AflR PF08493.5 g41306.t1 - 0.17 10.9 1.1 0.18 10.8 0.7 1 1 0 0 1 1 1 0 Aflatoxin regulatory protein | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:83004-83456 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~83004-83456 UBN2 PF14223.1 g101581.t1 - 0.02 14.7 0 0.025 14.3 0 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:363509-364222 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~363509-364222 bZIP_2 PF07716.10 g16803.t1 - 0.12 12.1 2.2 0.2 11.4 1.5 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:463783-464110 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~463783-464110 PspA_IM30 PF04012.7 g43883.t1 - 0.013 14.8 0.9 0.015 14.6 0.6 1 1 0 0 1 1 1 0 PspA/IM30 family | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:238836-239117 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~238836-239117 PAT1 PF09770.4 g77655.t1 - 3.1 5.9 12.2 3.6 5.6 8.5 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:45973-46572 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~45973-46572 DUF2157 PF09925.4 g59845.t1 - 0.072 12.6 0.3 0.13 11.8 0.1 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:9225-9936 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~9225-9936 TMEM192 PF14802.1 g48099.t1 - 0.049 12.4 0 0.057 12.2 0 1.1 1 0 0 1 1 1 0 TMEM192 family | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:210635-210871 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~210635-210871 PsbP PF01789.11 g93878.t1 - 0.022 14.2 0.3 0.028 13.8 0.2 1.1 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:18612-19106 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~18612-19106 HTH_AraC PF00165.18 g57892.t1 - 0.11 12.3 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family | Ref_seq=scaffold1260_contigs=17, transcript_loc=scaffold1260_contigs=17:559905-560180 Augustus predicted protein sequence Tobacco scaffold1260_contigs=17~559905-560180 NESP55 PF06390.7 g118186.t1 - 0.26 10.6 2.2 0.2 11 0.5 1.6 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:24804-25190 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~24804-25190 SURF2 PF05477.6 g74514.t1 - 0.39 9.8 3.6 0.44 9.6 2.5 1.1 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:32067-32719 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~32067-32719 PRCC PF10253.4 g66588.t1 - 0.0044 17.7 0.1 0.0062 17.2 0 1.3 1 0 0 1 1 1 1 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:136014-136858 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~136014-136858 DBR1 PF05011.8 g58642.t1 - 0.066 13 0.5 0.074 12.9 0.3 1.1 1 0 0 1 1 1 0 Lariat debranching enzyme, C-terminal domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:345283-345567 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~345283-345567 DUF4219 PF13961.1 g27327.t1 - 0.00011 21.5 0.1 0.00016 20.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:14596-14823 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~14596-14823 DUF3738 PF12543.3 g41461.t1 - 0.04 13.4 0.9 0.075 12.5 0.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3738) | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:949-2041 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~949-2041 RVT_3 PF13456.1 g108449.t1 - 0.006 16.3 0.1 0.0085 15.8 0.1 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:446786-447109 Augustus predicted protein sequence Tobacco scaffold2444_contigs=49~446786-447109 YdjO PF14169.1 g4591.t1 - 0.007 15.7 0.1 0.023 14.1 0.1 1.8 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:244267-245004 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~244267-245004 DUF4187 PF13821.1 g103153.t1 - 0.088 12.4 0.9 0.13 11.9 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) | Ref_seq=scaffold2302_contigs=9, transcript_loc=scaffold2302_contigs=9:76524-77896 Augustus predicted protein sequence Tobacco scaffold2302_contigs=9~76524-77896 TPR_10 PF13374.1 g128263.t1 - 0.022 14.6 0.2 0.048 13.6 0.1 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold2858_contigs=1, transcript_loc=scaffold2858_contigs=1:33109-34036 Augustus predicted protein sequence Tobacco scaffold2858_contigs=1~33109-34036 YbfN PF13982.1 g90621.t1 - 0.00074 19.6 0.1 0.00098 19.2 0.1 1.1 1 0 0 1 1 1 1 YbfN-like lipoprotein | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:516436-516651 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~516436-516651 Sugarporin_N PF11471.3 g73520.t1 - 0.84 9.3 4.4 3.2 7.4 0.7 2.3 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1541_contigs=9, transcript_loc=scaffold1541_contigs=9:28856-29170 Augustus predicted protein sequence Tobacco scaffold1541_contigs=9~28856-29170 DUF3669 PF12417.3 g18433.t1 - 0.025 14.2 0.4 0.87 9.3 0 2.1 1 1 1 2 2 2 0 Zinc finger protein | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:70190-71380 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~70190-71380 Birna_VP5 PF03042.9 g40712.t1 - 0.24 10.9 1.3 0.58 9.6 0.9 1.7 1 1 0 1 1 1 0 Birnavirus VP5 protein | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:376100-377244 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~376100-377244 Paxillin PF03535.8 g103419.t1 - 0.081 12.7 0.1 0.099 12.4 0 1.3 1 0 0 1 1 1 0 Paxillin family | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:461148-462088 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~461148-462088 PT PF04886.7 g97790.t1 - 0.15 11.3 4 0.34 10.2 2.8 1.7 1 0 0 1 1 1 0 PT repeat | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:177541-177789 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~177541-177789 Herpes_U59 PF04529.7 g84844.t1 - 0.15 10.9 0.1 0.2 10.4 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus U59 protein | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:56528-62647 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~56528-62647 TerY-C PF15616.1 g119620.t1 - 0.044 13.7 0 0.051 13.5 0 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:95266-95690 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~95266-95690 Ank_5 PF13857.1 g129657.t1 - 0.12 12.6 0 25 5.2 0 2.3 2 0 0 2 2 2 0 Ankyrin repeats (many copies) | Ref_seq=scaffold3010_contigs=1, transcript_loc=scaffold3010_contigs=1:6502-7264 Augustus predicted protein sequence Tobacco scaffold3010_contigs=1~6502-7264 PI-PLC-Y PF00387.14 g53556.t1 - 0.22 11.5 0.6 0.27 11.2 0.4 1.1 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, Y domain | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:71593-72300 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~71593-72300 Coiled PF05710.7 g100889.t1 - 3 8.3 8.1 5.5 7.5 5.6 1.4 1 0 0 1 1 1 0 Coiled coil | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:262559-263062 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~262559-263062 zf-CCHC PF00098.18 g115494.t1 - 0.0012 18.6 0.4 0.0012 18.6 0.2 1.8 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:511116-511469 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~511116-511469 IncA PF04156.9 g2191.t1 - 0.00076 19.1 12.4 0.0012 18.4 8.6 1.3 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold203_contigs=2, transcript_loc=scaffold203_contigs=2:45642-46211 Augustus predicted protein sequence Tobacco scaffold203_contigs=2~45642-46211 Dehydratase_LU PF02286.10 g30527.t1 - 0.026 12.8 0 0.027 12.7 0 1 1 0 0 1 1 1 0 Dehydratase large subunit | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1109774-1112335 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1109774-1112335 BSP_II PF05432.6 g67468.t1 - 0.55 9.4 16.6 0.63 9.2 11.5 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:326931-327134 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~326931-327134 DUF2576 PF10845.3 g87428.t1 - 0.0076 15.3 4.1 12 5.1 0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF2576) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:59386-60519 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~59386-60519 eIF3g PF12353.3 g37672.t1 - 0.00028 20.8 0.3 0.00055 19.8 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:181146-181994 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~181146-181994 Trehalase PF01204.13 g104559.t1 - 0.19 10.3 2 0.2 10.2 1.4 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:32322-32739 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~32322-32739 Levi_coat PF01819.12 g117459.t1 - 0.099 12.2 0 0.15 11.6 0 1.3 1 0 0 1 1 1 0 Levivirus coat protein | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:199159-200411 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~199159-200411 UBN2 PF14223.1 g97707.t1 - 0.0029 17.3 2 0.027 14.2 0 2.2 2 0 0 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:7145-7663 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~7145-7663 RVT_3 PF13456.1 g98447.t1 - 0.00096 18.8 0 0.36 10.6 0 2.1 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold2161_contigs=13, transcript_loc=scaffold2161_contigs=13:89310-89616 Augustus predicted protein sequence Tobacco scaffold2161_contigs=13~89310-89616 zf-CpG_bind_C PF12269.3 g38930.t1 - 0.87 9 3.1 0.46 9.9 0.3 1.8 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:295512-296585 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~295512-296585 DUF4219 PF13961.1 g123988.t1 - 0.0054 16.1 0 0.0084 15.5 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1060272-1060493 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1060272-1060493 DUF1465 PF07323.7 g77579.t1 - 0.28 10.7 4.9 0.27 10.8 2.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1465) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:30357-32199 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~30357-32199 UBN2_2 PF14227.1 g66740.t1 - 0.000059 22.5 0 0.000087 22 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:566258-566691 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~566258-566691 PX PF00787.19 g24501.t1 - 0.032 14 0.1 0.033 13.9 0 1.1 1 0 0 1 1 1 0 PX domain | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:108256-108471 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~108256-108471 DUF4174 PF13778.1 g85792.t1 - 0.0041 17.2 0.2 0.0041 17.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4174) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:594794-595057 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~594794-595057 DUF4219 PF13961.1 g106634.t1 - 0.00068 18.9 0.3 0.001 18.3 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:250913-251140 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~250913-251140 Retrotrans_gag PF03732.12 g68075.t1 - 0.021 14.9 0 0.032 14.2 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:63815-65197 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~63815-65197 Ebola_NP PF05505.7 g9006.t1 - 0.13 10.2 0 0.15 10.1 0 1 1 0 0 1 1 1 0 Ebola nucleoprotein | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:54619-55867 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~54619-55867 YrhK PF14145.1 g86341.t1 - 0.032 13.9 2.6 0.032 13.9 1.8 1.6 2 0 0 2 2 2 0 YrhK-like protein | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:85818-86226 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~85818-86226 SpaB_C PF14028.1 g39241.t1 - 0.036 13.6 0 0.044 13.3 0 1 1 0 0 1 1 1 0 SpaB C-terminal domain | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:194811-195131 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~194811-195131 BBE PF08031.7 g62474.t1 - 0.031 14.1 0 1.1 9.2 0 2.4 2 1 0 2 2 2 0 Berberine and berberine like | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:308396-308785 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~308396-308785 DUF4144 PF13642.1 g117583.t1 - 0.0066 16.7 0.4 0.0078 16.5 0.3 1.1 1 0 0 1 1 1 1 protein structure with unknown function | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:84392-84682 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~84392-84682 DUF220 PF02713.9 g121194.t1 - 0.098 12.3 0 0.12 12 0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF220 | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:182535-182762 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~182535-182762 GHL5 PF14872.1 g8695.t1 - 0.021 12.6 0 0.023 12.4 0 1 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:19048-20251 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~19048-20251 Zn_ribbon_recom PF13408.1 g118727.t1 - 0.083 13.1 0.9 0.16 12.2 0.6 1.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain | Ref_seq=scaffold2705_contigs=8, transcript_loc=scaffold2705_contigs=8:165061-165788 Augustus predicted protein sequence Tobacco scaffold2705_contigs=8~165061-165788 DUF3992 PF13157.1 g104650.t1 - 0.099 12.8 0 0.15 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3992) | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:286805-289643 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~286805-289643 Fzo_mitofusin PF04799.8 g25019.t1 - 0.087 12.1 2.7 0.14 11.5 1.9 1.4 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:105197-105898 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~105197-105898 Ras_bdg_2 PF14847.1 g126362.t1 - 0.049 13.5 0 0.056 13.3 0 1.1 1 0 0 1 1 1 0 Ras-binding domain of Byr2 | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:64667-66110 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~64667-66110 SAA PF00277.13 g47205.t1 - 0.054 13.8 0.1 0.092 13.1 0 1.4 1 0 0 1 1 1 0 Serum amyloid A protein | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:305781-306340 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~305781-306340 zf-BED PF02892.10 g64551.t1 - 0.018 14.7 2 0.035 13.8 1.4 1.5 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:462240-462821 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~462240-462821 DUF1896 PF08989.5 g91856.t1 - 0.021 14.6 0.1 0.03 14.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1896) | Ref_seq=scaffold1980_contigs=4, transcript_loc=scaffold1980_contigs=4:135479-135889 Augustus predicted protein sequence Tobacco scaffold1980_contigs=4~135479-135889 FAM183 PF14886.1 g19042.t1 - 0.027 15 0 0.045 14.2 0 1.4 1 0 0 1 1 1 0 FAM183A and FAM183B related | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:164775-165071 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~164775-165071 EF-hand_like PF09279.6 g28321.t1 - 0.016 15.2 0.9 0.028 14.4 0.6 1.5 1 1 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:53957-54944 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~53957-54944 DUF904 PF06005.7 g1805.t1 - 0.05 13.8 1 0.088 13.1 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:44075-44663 Augustus predicted protein sequence Tobacco scaffold194_contigs=2~44075-44663 DUF4620 PF15399.1 g11903.t1 - 0.17 12 3.7 0.26 11.4 2.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4620) | Ref_seq=scaffold417_contigs=2, transcript_loc=scaffold417_contigs=2:20840-21187 Augustus predicted protein sequence Tobacco scaffold417_contigs=2~20840-21187 ATHILA PF03078.10 g93845.t1 - 0.000003 26.1 0 0.0000033 25.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:36901-37116 Augustus predicted protein sequence Tobacco scaffold2033_contigs=2~36901-37116 SlyX PF04102.7 g21989.t1 - 0.0092 16.3 1.8 0.028 14.8 0.3 2.1 2 0 0 2 2 2 1 SlyX | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:56337-57002 Augustus predicted protein sequence Tobacco scaffold607_contigs=8~56337-57002 Neisseria_TspB PF05616.8 g30592.t1 - 1.7 6.9 5.1 1.8 6.8 3.5 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold776_contigs=2, transcript_loc=scaffold776_contigs=2:6767-7084 Augustus predicted protein sequence Tobacco scaffold776_contigs=2~6767-7084 DUF3921 PF13060.1 g71332.t1 - 0.18 11.6 0.6 1.2 9 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3921) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:541571-542055 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~541571-542055 Ku_C PF03730.9 g112229.t1 - 0.15 12.5 4.1 10 6.7 0.3 2.7 2 0 0 2 2 2 0 Ku70/Ku80 C-terminal arm | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:36642-37536 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~36642-37536 SRP14 PF02290.10 g29955.t1 - 0.075 12.9 5.4 0.15 11.9 3.5 1.6 1 1 1 2 2 2 0 Signal recognition particle 14kD protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:104968-105234 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~104968-105234 TIL PF01826.12 g4285.t1 - 0.013 15.5 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 Trypsin Inhibitor like cysteine rich domain | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:31898-32260 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~31898-32260 DUF1754 PF08555.5 g10201.t1 - 0.32 11.6 2.4 0.38 11.3 1.7 1.1 1 0 0 1 1 1 0 Eukaryotic family of unknown function (DUF1754) | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:387814-388251 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~387814-388251 Pro-rich PF15240.1 g57369.t1 - 0.23 11.5 3.4 0.28 11.2 2.4 1.1 1 0 0 1 1 1 0 Proline-rich | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:42034-42354 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~42034-42354 DUF1510 PF07423.6 g26132.t1 - 0.078 12.3 1.7 0.098 12 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold709_contigs=3, transcript_loc=scaffold709_contigs=3:12420-12629 Augustus predicted protein sequence Tobacco scaffold709_contigs=3~12420-12629 DUF4228 PF14009.1 g123703.t1 - 0.11 12.6 0.1 0.12 12.5 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4228) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:328120-328344 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~328120-328344 Chordopox_G3 PF06129.7 g93321.t1 - 0.15 12.2 0.2 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus G3 protein | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:51050-51576 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~51050-51576 DUF2117 PF09890.4 g23262.t1 - 0.0077 15.4 1.5 0.0092 15.1 1.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:98020-98593 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~98020-98593 CAP_N PF01213.14 g82104.t1 - 0.025 13.8 5.5 0.032 13.5 3.8 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:668645-669163 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~668645-669163 Aft1_HRR PF11787.3 g99377.t1 - 0.015 16.2 0.4 2.9 9 0 2.2 2 0 0 2 2 2 0 Aft1 HRR domain | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:361197-361505 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~361197-361505 DUF429 PF04250.8 g41705.t1 - 0.084 12.1 0.1 0.088 12 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF429) | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:235157-235366 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~235157-235366 ARA70 PF12489.3 g12619.t1 - 0.038 13.9 4.5 0.064 13.2 3.1 1.5 1 1 0 1 1 1 0 Nuclear coactivator | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:73332-73646 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~73332-73646 MdcG PF10620.4 g89517.t1 - 0.048 13.1 0 0.058 12.9 0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:179724-181015 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~179724-181015 Calici_MSP PF05752.6 g22654.t1 - 0.026 14.1 0.1 0.029 13.9 0.1 1.2 1 0 0 1 1 1 0 Calicivirus minor structural protein | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:70013-70321 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~70013-70321 PGG PF13962.1 g16192.t1 - 0.011 15.3 0.6 0.014 15 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:61713-62075 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~61713-62075 T4_Gp59_N PF08993.5 g46051.t1 - 0.018 15 0.2 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 T4 gene Gp59 loader of gp41 DNA helicase | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:387960-388277 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~387960-388277 EpuA PF11772.3 g99515.t1 - 0.068 12.6 0.2 0.15 11.5 0.2 1.6 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:728874-729662 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~728874-729662 ATHILA PF03078.10 g26693.t1 - 5.8E-012 44.9 0.4 4.8E-010 38.6 0 2 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:159686-160495 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~159686-160495 PqqA PF08042.6 g24178.t1 - 0.087 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 PqqA family | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:94993-95426 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~94993-95426 NUT_C PF12882.2 g50889.t1 - 0.099 12.2 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 NUT protein C terminal | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:1-509 Augustus predicted protein sequence Tobacco scaffold1147_contigs=3~1-509 DUF4469 PF14734.1 g68522.t1 - 0.0095 15.7 0.1 0.025 14.4 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4469) with IG-like fold | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:324545-325270 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~324545-325270 DUF4201 PF13870.1 g81379.t1 - 0.0082 15.5 2.2 0.03 13.7 0.1 2 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:116873-117463 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~116873-117463 YdjO PF14169.1 g75099.t1 - 0.026 13.9 0.7 0.064 12.7 0.1 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:178903-180324 Augustus predicted protein sequence Tobacco scaffold1566_contigs=4~178903-180324 DUF3772 PF12607.3 g18443.t1 - 0.034 13.7 2.3 0.059 13 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3772) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:34274-34597 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~34274-34597 Trypan_PARP PF05887.6 g55132.t1 - 0.39 10.5 5.4 0.37 10.6 3.8 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:42-370 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~42-370 Thr_synth_N PF14821.1 g127305.t1 - 0.018 15 0 8.5 6.4 0 2.3 2 0 0 2 2 2 0 Threonine synthase N terminus | Ref_seq=scaffold2819_contigs=1, transcript_loc=scaffold2819_contigs=1:14746-16412 Augustus predicted protein sequence Tobacco scaffold2819_contigs=1~14746-16412 EF-hand_like PF09279.6 g38471.t1 - 0.0052 16.7 0 0.0076 16.2 0 1.2 1 0 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:30088-30429 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~30088-30429 WSC PF01822.14 g118939.t1 - 0.097 12.6 0 0.11 12.4 0 1.1 1 0 0 1 1 1 0 WSC domain | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:520055-520318 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~520055-520318 REV PF00424.13 g87166.t1 - 0.093 12.6 3.7 0.1 12.4 2.6 1.3 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:289029-289253 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~289029-289253 SAC3 PF12209.3 g40958.t1 - 0.11 12.6 0.3 0.17 12 0.2 1.2 1 0 0 1 1 1 0 Leucine permease transcriptional regulator helical domain | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:282165-282401 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~282165-282401 Dicty_CTDC PF00526.13 g43169.t1 - 0.21 11.4 1.2 0.47 10.3 0.8 1.5 1 0 0 1 1 1 0 Dictyostelium (slime mold) repeat | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:30922-31155 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~30922-31155 IFP_35_N PF07334.8 g115566.t1 - 0.036 14 0.6 0.12 12.3 0.2 2 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:667460-668144 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~667460-668144 Phage_P2_GpU PF06995.6 g73972.t1 - 0.11 11.8 0 0.16 11.3 0 1.2 1 0 0 1 1 1 0 Phage P2 GpU | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:307883-308648 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~307883-308648 SHOCT PF09851.4 g33590.t1 - 0.082 12.4 4.2 0.17 11.4 2.9 1.5 1 0 0 1 1 1 0 Short C-terminal domain | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:124502-125779 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~124502-125779 Pollen_Ole_e_I PF01190.12 g60564.t1 - 0.000021 24.2 0.1 0.000025 24 0.1 1.1 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:585498-585875 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~585498-585875 Pro_dh-DNA_bdg PF14850.1 g70422.t1 - 0.035 14.3 0 0.045 13.9 0 1.2 1 0 0 1 1 1 0 DNA-binding domain of Proline dehydrogenase | Ref_seq=scaffold1494_contigs=2, transcript_loc=scaffold1494_contigs=2:27335-28153 Augustus predicted protein sequence Tobacco scaffold1494_contigs=2~27335-28153 CPL PF08144.6 g122792.t1 - 0.0019 18 1 0.0035 17.2 0.7 1.5 1 1 0 1 1 1 1 CPL (NUC119) domain | Ref_seq=scaffold2748_contigs=28, transcript_loc=scaffold2748_contigs=28:558266-559213 Augustus predicted protein sequence Tobacco scaffold2748_contigs=28~558266-559213 MAD PF05557.8 g127377.t1 - 0.048 11.7 0.3 0.05 11.6 0.2 1 1 0 0 1 1 1 0 Mitotic checkpoint protein | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:39173-39388 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~39173-39388 DUF4527 PF15030.1 g17745.t1 - 0.083 12.1 0 0.083 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:85687-88652 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~85687-88652 CENP-H PF05837.7 g46607.t1 - 0.039 14.1 3.6 0.049 13.8 2.5 1.2 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1072_contigs=9, transcript_loc=scaffold1072_contigs=9:23755-23985 Augustus predicted protein sequence Tobacco scaffold1072_contigs=9~23755-23985 ATHILA PF03078.10 g103233.t1 - 0.0055 15.3 0.1 1.1 7.7 0 2.1 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:178463-179563 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~178463-179563 ESPR PF13018.1 g130358.t1 - 0.052 13.1 4 3.7 7.2 0 3.5 3 1 0 3 3 3 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold4168_contigs=1, transcript_loc=scaffold4168_contigs=1:539-1064 Augustus predicted protein sequence Tobacco scaffold4168_contigs=1~539-1064 BOFC_N PF08977.5 g92475.t1 - 0.055 13.2 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Bypass of Forespore C, N terminal | Ref_seq=scaffold1988_contigs=1, transcript_loc=scaffold1988_contigs=1:4560-4871 Augustus predicted protein sequence Tobacco scaffold1988_contigs=1~4560-4871 Shugoshin_N PF07558.6 g12083.t1 - 0.025 14.2 0.5 2.2 8 0.1 2.3 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:12914-13372 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~12914-13372 Dimer_Tnp_hAT PF05699.9 g15248.t1 - 0.013 15.1 0 0.021 14.4 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:301117-301696 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~301117-301696 ATHILA PF03078.10 g102255.t1 - 0.000000024 33 0.1 0.000000029 32.7 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:114498-115019 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~114498-115019 PI3K_rbd PF00794.13 g76336.t1 - 0.11 12.4 0 0.16 11.9 0 1.2 1 0 0 1 1 1 0 PI3-kinase family, ras-binding domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:222115-223036 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~222115-223036 DUF2914 PF11141.3 g36601.t1 - 0.12 11.9 0.4 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2914) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:80929-81288 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~80929-81288 AKAP28 PF14469.1 g38805.t1 - 0.09 12.3 0.2 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 28 kDa A-kinase anchor | Ref_seq=scaffold944_contigs=5, transcript_loc=scaffold944_contigs=5:88495-88749 Augustus predicted protein sequence Tobacco scaffold944_contigs=5~88495-88749 DUF2096 PF09869.4 g104863.t1 - 0.089 12.6 0 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:213967-214861 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~213967-214861 PMD PF10536.4 g46351.t1 - 0.0000084 25 0.5 0.00043 19.3 0.2 2 2 0 0 2 2 2 2 Plant mobile domain | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:151891-153155 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~151891-153155 Prok-RING_4 PF14447.1 g71783.t1 - 0.0032 16.9 0 0.0058 16.1 0 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:109444-110535 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~109444-110535 ORF6C PF10552.4 g50263.t1 - 0.0066 16.1 0.4 0.012 15.3 0.3 1.4 1 0 0 1 1 1 1 ORF6C domain | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:250231-250677 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~250231-250677 DBD_Tnp_Mut PF03108.10 g38042.t1 - 0.000000002 36.8 0 2.5E-009 36.5 0 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:83013-83333 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~83013-83333 DUF3153 PF11353.3 g118360.t1 - 0.1 12 0.1 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:531368-532289 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~531368-532289 Aft1_HRA PF11786.3 g86010.t1 - 0.000053 23.3 0.6 0.25 11.6 0.1 2.1 1 1 1 2 2 2 2 Aft1 HRA domain | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:392251-392871 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~392251-392871 IncA PF04156.9 g120754.t1 - 0.016 14.7 0.6 0.022 14.3 0.4 1.3 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:43439-45006 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~43439-45006 TORC_N PF12884.2 g44864.t1 - 3.1 8.3 6.7 2.6 8.6 3.5 1.8 2 0 0 2 2 2 0 Transducer of regulated CREB activity, N terminus | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:72457-73365 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~72457-73365 RVT_3 PF13456.1 g14143.t1 - 0.000076 22.4 1.5 0.0028 17.3 0 2.1 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:184336-185514 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~184336-185514 NifU_N PF01592.11 g38992.t1 - 0.11 12.4 0 0.11 12.4 0 1.1 1 0 0 1 1 1 0 NifU-like N terminal domain | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:121475-121696 Augustus predicted protein sequence Tobacco scaffold947_contigs=9~121475-121696 ATHILA PF03078.10 g101163.t1 - 0.0017 17 0 0.0017 17 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:179617-179925 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~179617-179925 zf-RING_2 PF13639.1 g1362.t1 - 0.002 17.9 1 0.0026 17.5 0.7 1.3 1 1 0 1 1 1 1 Ring finger domain | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:51019-51273 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~51019-51273 Dicty_REP PF05086.7 g75318.t1 - 0.96 7.1 6 1 7 4.2 1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:147635-148012 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~147635-148012 Antimicrobial_5 PF08026.6 g86490.t1 - 2.7 7.8 7 0.11 12.3 1 1.6 2 0 0 2 2 2 0 Bee antimicrobial peptide | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:430715-431125 Augustus predicted protein sequence Tobacco scaffold1848_contigs=19~430715-431125 UPF0058 PF01893.11 g88937.t1 - 0.097 12.7 0 0.17 11.9 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0058 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:230613-231050 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~230613-231050 NEP PF10167.4 g40343.t1 - 0.016 14.8 0.3 0.019 14.6 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:151736-152053 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~151736-152053 DUF1880 PF08976.6 g101566.t1 - 0.12 12.4 0.1 0.16 12.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:335624-335899 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~335624-335899 PMSR PF01625.16 g87895.t1 - 0.039 13.8 0.3 0.045 13.6 0.2 1.2 1 0 0 1 1 1 0 Peptide methionine sulfoxide reductase | Ref_seq=scaffold1901_contigs=10, transcript_loc=scaffold1901_contigs=10:167106-167426 Augustus predicted protein sequence Tobacco scaffold1901_contigs=10~167106-167426 DUF3006 PF11213.3 g98264.t1 - 0.045 13.4 1.1 0.062 13 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:30034-30475 Augustus predicted protein sequence Tobacco scaffold2156_contigs=2~30034-30475 DUF2740 PF10872.3 g92790.t1 - 0.13 11.9 0 26 4.5 0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2740) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:203114-204087 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~203114-204087 Nop14 PF04147.7 g98373.t1 - 0.0015 16.5 11.6 0.0019 16.2 8 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:25265-29582 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~25265-29582 IncA PF04156.9 g100502.t1 - 0.2 11.2 1.9 0.28 10.7 1.3 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:39927-41294 Augustus predicted protein sequence Tobacco scaffold2197_contigs=7~39927-41294 Tantalus PF15386.1 g103587.t1 - 0.04 13.6 0.1 0.092 12.5 0.1 1.6 1 1 1 2 2 2 0 Drosophila Tantalus-like | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:101268-101588 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~101268-101588 Choline_kin_N PF04428.9 g9235.t1 - 0.091 12.2 0.1 4.4 6.8 0 2.5 2 0 0 2 2 2 0 Choline kinase N terminus | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:104384-105675 Augustus predicted protein sequence Tobacco scaffold355_contigs=5~104384-105675 UBN2 PF14223.1 g96452.t1 - 0.0000022 27.4 0.4 0.0000023 27.4 0.3 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:21996-22199 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~21996-22199 Gly-rich_Ago1 PF12764.2 g63028.t1 - 1.1 9.9 4.5 1.5 9.5 3.1 1.5 1 1 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:260141-266598 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~260141-266598 NDUF_B12 PF08122.7 g41232.t1 - 0.043 13.5 0.1 0.092 12.4 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:64342-64947 Augustus predicted protein sequence Tobacco scaffold985_contigs=1~64342-64947 Jnk-SapK_ap_N PF09744.4 g383.t1 - 0.0087 16 2.2 0.013 15.5 1.5 1.2 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:53951-58125 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~53951-58125 Strabismus PF06638.6 g130299.t1 - 0.058 11.6 0 0.058 11.6 0 1.1 1 0 0 1 1 1 0 Strabismus protein | Ref_seq=scaffold3958_contigs=1, transcript_loc=scaffold3958_contigs=1:51-296 Augustus predicted protein sequence Tobacco scaffold3958_contigs=1~51-296 Apc4 PF12896.2 g23012.t1 - 0.023 13.9 0.3 0.032 13.5 0.2 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 4 | Ref_seq=scaffold633_contigs=1, transcript_loc=scaffold633_contigs=1:3876-4628 Augustus predicted protein sequence Tobacco scaffold633_contigs=1~3876-4628 7tm_4 PF13853.1 g119865.t1 - 0.056 13.2 0.3 0.061 13.1 0.2 1.1 1 0 0 1 1 1 0 Olfactory receptor | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:392746-393484 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~392746-393484 ApoO PF09769.4 g57518.t1 - 0.04 13.6 0.1 0.047 13.3 0 1.2 1 0 0 1 1 1 0 Apolipoprotein O | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:9118-9342 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~9118-9342 DUF4219 PF13961.1 g114821.t1 - 0.0000002 30.2 0.2 0.00000033 29.5 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:179743-180006 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~179743-180006 Mating_C PF12737.2 g54519.t1 - 0.15 10.9 3.3 0.16 10.7 2.3 1.1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:8654-9010 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~8654-9010 Peptidase_M8 PF01457.11 g53145.t1 - 0.26 9.5 0.5 0.33 9.2 0.3 1.1 1 0 0 1 1 1 0 Leishmanolysin | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:40980-41612 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~40980-41612 TMEM141 PF15110.1 g30668.t1 - 0.13 12.5 0.6 0.2 11.9 0.4 1.3 1 0 0 1 1 1 0 TMEM141 protein family | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:133233-133580 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~133233-133580 PAT1 PF09770.4 g27922.t1 - 4.8 5.2 10.7 5.2 5.1 7.4 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:580315-580671 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~580315-580671 DUF3977 PF13122.1 g77617.t1 - 0.0068 16.1 0 40 4.1 0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF3977) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:188684-190735 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~188684-190735 DUF4580 PF15162.1 g9577.t1 - 0.13 11.5 0.1 0.15 11.3 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4580) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:78831-79055 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~78831-79055 Toxin_19 PF08088.7 g101981.t1 - 0.24 11.3 4.5 0.13 12.1 1.3 2 2 1 0 2 2 2 0 Conotoxin I-superfamily | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:232871-233176 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~232871-233176 CENP-B_dimeris PF09026.5 g84846.t1 - 0.01 16 11 0.012 15.8 7.6 1.1 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:65250-65552 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~65250-65552 Peptidase_S46 PF10459.4 g117987.t1 - 0.43 8.9 5.5 0.63 8.3 3.8 1.3 1 1 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:200258-200883 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~200258-200883 Prot_inhib_II PF02428.10 g88145.t1 - 0.17 11.9 0.4 0.28 11.2 0 1.5 2 0 0 2 2 2 0 Potato type II proteinase inhibitor family | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:234809-235247 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~234809-235247 TFIID_20kDa PF03847.8 g119058.t1 - 0.1 12.8 0.3 2.5 8.4 0.1 2.1 1 1 1 2 2 2 0 Transcription initiation factor TFIID subunit A | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:866481-866702 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~866481-866702 Herpes_UL74 PF07982.7 g97712.t1 - 0.11 11.1 0 0.11 11.1 0 1 1 0 0 1 1 1 0 Herpes UL74 glycoproteins | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:14870-15599 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~14870-15599 TMEM190 PF15431.1 g73808.t1 - 0.0098 15.8 0.1 0.011 15.7 0.1 1.2 1 0 0 1 1 1 1 Transmembrane protein 190 | Ref_seq=scaffold1549_contigs=4, transcript_loc=scaffold1549_contigs=4:2486-2728 Augustus predicted protein sequence Tobacco scaffold1549_contigs=4~2486-2728 CDC45 PF02724.9 g27955.t1 - 0.42 8.5 6.6 0.37 8.7 4.6 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:655974-657774 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~655974-657774 Cyclin_C PF02984.14 g90334.t1 - 0.0031 17.4 0.1 0.0039 17.1 0 1.2 1 0 0 1 1 1 1 Cyclin, C-terminal domain | Ref_seq=scaffold1961_contigs=3, transcript_loc=scaffold1961_contigs=3:29937-30218 Augustus predicted protein sequence Tobacco scaffold1961_contigs=3~29937-30218 PEARLI-4 PF05278.7 g50760.t1 - 0.011 15.1 1 0.012 15 0.7 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:35321-35664 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~35321-35664 DUF1077 PF06417.7 g66145.t1 - 0.096 12 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) | Ref_seq=scaffold1436_contigs=2, transcript_loc=scaffold1436_contigs=2:47396-47683 Augustus predicted protein sequence Tobacco scaffold1436_contigs=2~47396-47683 CarbpepA_inh PF02977.10 g25692.t1 - 0.059 12.9 0.5 0.66 9.6 0.1 2.5 3 0 0 3 3 3 0 Carboxypeptidase A inhibitor | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:73945-74690 Augustus predicted protein sequence Tobacco scaffold703_contigs=10~73945-74690 rRNA_proc-arch PF13234.1 g129550.t1 - 0.004 16.3 0 0.0043 16.2 0 1 1 0 0 1 1 1 1 rRNA-processing arch domain | Ref_seq=scaffold2981_contigs=1, transcript_loc=scaffold2981_contigs=1:5585-5815 Augustus predicted protein sequence Tobacco scaffold2981_contigs=1~5585-5815 Toxin_23 PF08093.6 g15434.t1 - 4.6 7.2 10.3 14 5.7 0.2 3.8 4 0 0 4 4 4 0 Magi 5 toxic peptide family | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:324985-325344 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~324985-325344 Phage_min_tail PF05939.8 g94646.t1 - 0.094 12.6 0 0.11 12.4 0 1.1 1 0 0 1 1 1 0 Phage minor tail protein | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:227776-228129 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~227776-228129 DUF1476 PF07345.6 g49974.t1 - 0.062 13.5 0 3.8 7.7 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1476) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:468795-469582 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~468795-469582 zf-CCHC PF00098.18 g2831.t1 - 0.0024 17.7 1.5 0.0037 17.1 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:53018-53332 Augustus predicted protein sequence Tobacco scaffold219_contigs=6~53018-53332 TTKRSYEDQ PF10212.4 g10558.t1 - 0.033 13.1 0.1 0.037 12.9 0 1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:286360-286644 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~286360-286644 FAM178 PF14816.1 g111895.t1 - 0.036 12.7 0.2 0.042 12.5 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function, FAM178 | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:45411-45853 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~45411-45853 Phage_P2_GpE PF06528.7 g77433.t1 - 0.11 12 0 0.21 11 0 1.5 1 0 0 1 1 1 0 Phage P2 GpE | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:64621-64953 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~64621-64953 MRP-S32 PF10210.4 g75812.t1 - 0.085 13.1 0.3 0.13 12.6 0.2 1.3 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 | Ref_seq=scaffold1603_contigs=1, transcript_loc=scaffold1603_contigs=1:39385-39763 Augustus predicted protein sequence Tobacco scaffold1603_contigs=1~39385-39763 YopE PF03545.8 g102920.t1 - 0.000065 22.7 0 9.1 6.3 0 3.3 3 0 0 3 3 3 3 Yersinia virulence determinant (YopE) | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:41312-43153 Augustus predicted protein sequence Tobacco scaffold2272_contigs=16~41312-43153 DUF3796 PF12676.2 g21321.t1 - 2.7 8.2 6.8 5.3 7.2 4.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3796) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:93868-94548 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~93868-94548 BMC PF00936.14 g51300.t1 - 0.081 12.6 0 0.098 12.3 0 1.2 1 0 0 1 1 1 0 BMC domain | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:361504-362166 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~361504-362166 GAS PF13851.1 g120755.t1 - 0.073 12.2 0 0.12 11.5 0 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:45911-46480 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~45911-46480 4HBT_3 PF13622.1 g38246.t1 - 0.066 12.9 2.2 0.082 12.6 1.5 1 1 0 0 1 1 1 0 Thioesterase-like superfamily | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:42432-43251 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~42432-43251 AAA_5 PF07728.9 g64045.t1 - 0.076 12.7 0 0.086 12.5 0 1.1 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:228632-228838 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~228632-228838 YdjO PF14169.1 g62448.t1 - 0.0027 17.1 0.7 0.0042 16.4 0.5 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:243964-244308 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~243964-244308 zf-CCHC PF00098.18 g115594.t1 - 0.000098 22 0.6 0.00015 21.5 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:710453-710839 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~710453-710839 Cut8_N PF14482.1 g91548.t1 - 0.18 11.8 2.4 0.35 10.8 0.5 2.2 2 1 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:223194-223900 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~223194-223900 TehB PF03848.9 g124933.t1 - 0.06 12.5 0.1 0.075 12.1 0.1 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:200126-202028 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~200126-202028 DUF3982 PF13138.1 g11967.t1 - 0.14 12 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3982) | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:69854-70586 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~69854-70586 DUF4563 PF15124.1 g1622.t1 - 0.016 14.7 0 2.9 7.4 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4563) | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:24179-24657 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~24179-24657 Mito_fiss_reg PF05308.6 g92816.t1 - 1 8.6 7.9 1.1 8.6 5.5 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:302284-302610 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~302284-302610 zf-CCHC PF00098.18 g86154.t1 - 0.000053 22.9 1 0.000092 22.1 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:58866-59246 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~58866-59246 DUF1985 PF09331.6 g80813.t1 - 0.0000038 26.7 0 0.000006 26.1 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:102770-104544 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~102770-104544 RVT_3 PF13456.1 g70505.t1 - 0.0048 16.6 0 0.006 16.3 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:168960-169235 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~168960-169235 DUF3971 PF13116.1 g65899.t1 - 0.042 13.2 0.1 0.059 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:21971-24681 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~21971-24681 Chromo PF00385.19 g32276.t1 - 0.054 13.1 0 0.083 12.5 0 1.4 1 1 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:68502-69281 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~68502-69281 Nnf1 PF03980.9 g14575.t1 - 0.095 12.6 1.4 5 7.1 0.1 2.2 2 0 0 2 2 2 0 Nnf1 | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:26802-27164 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~26802-27164 DUF3367 PF11847.3 g15036.t1 - 0.036 12 0 0.042 11.8 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3367) | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:89100-89369 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~89100-89369 DUF1462 PF07315.6 g42377.t1 - 0.026 14.5 0.1 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:164824-165102 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~164824-165102 DUF725 PF05267.7 g93857.t1 - 0.0013 18.6 1.3 0.0017 18.2 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF725) | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:74300-74587 Augustus predicted protein sequence Tobacco scaffold2033_contigs=2~74300-74587 Sec2p PF06428.6 g111163.t1 - 0.0057 16.4 0.6 0.0082 15.9 0.4 1.2 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:180453-182845 Augustus predicted protein sequence Tobacco scaffold2580_contigs=9~180453-182845 RNA_pol_3_Rpc31 PF11705.3 g82546.t1 - 0.072 13 4 0.07 13 2.8 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold1751_contigs=5, transcript_loc=scaffold1751_contigs=5:61843-63477 Augustus predicted protein sequence Tobacco scaffold1751_contigs=5~61843-63477 UPF0565 PF10561.4 g13074.t1 - 0.071 11.9 0 0.099 11.5 0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0565 | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:35942-36397 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~35942-36397 Ribosomal_S7 PF00177.16 g101305.t1 - 0.12 11.9 0 0.14 11.7 0 1.1 1 0 0 1 1 1 0 Ribosomal protein S7p/S5e | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:229418-230536 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~229418-230536 DUF765 PF05570.6 g2941.t1 - 4 7.4 8.8 3.9 7.5 1 2.5 2 0 0 2 2 2 0 Circovirus protein of unknown function (DUF765) | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:88424-88753 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~88424-88753 OAD_gamma PF04277.8 g50346.t1 - 0.0084 16.4 0.6 0.013 15.9 0.4 1.3 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1138_contigs=6, transcript_loc=scaffold1138_contigs=6:72709-72930 Augustus predicted protein sequence Tobacco scaffold1138_contigs=6~72709-72930 DUF1319 PF07028.6 g76258.t1 - 0.005 17 0.6 0.0063 16.7 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1319) | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:19967-20347 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~19967-20347 RVT_3 PF13456.1 g9230.t1 - 0.00053 19.7 0 0.0006 19.5 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:87496-88298 Augustus predicted protein sequence Tobacco scaffold355_contigs=5~87496-88298 MUG2_C PF08593.5 g15541.t1 - 0.81 9.9 3.7 19 5.5 0 2.7 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:561154-561552 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~561154-561552 DUF4164 PF13747.1 g65952.t1 - 0.019 15.1 0.4 0.042 13.9 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1431_contigs=4, transcript_loc=scaffold1431_contigs=4:23062-23887 Augustus predicted protein sequence Tobacco scaffold1431_contigs=4~23062-23887 LmjF365940-deam PF14421.1 g110870.t1 - 0.082 12.2 0 0.088 12.1 0 1.2 1 0 0 1 1 1 0 A distinct subfamily of CDD/CDA-like deaminases | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:914036-914410 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~914036-914410 DUF1979 PF09322.5 g59911.t1 - 0.068 12.8 0.1 1.4 8.6 0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF1979) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:145903-146676 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~145903-146676 UBN2 PF14223.1 g121800.t1 - 0.006 16.3 0.3 0.042 13.6 0 2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:370270-371099 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~370270-371099 NOB1_Zn_bind PF08772.6 g63959.t1 - 0.027 14.2 0 0.038 13.8 0 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:24499-24807 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~24499-24807 ERM PF00769.14 g128643.t1 - 0.012 15.1 9 0.014 14.9 6.2 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold2879_contigs=1, transcript_loc=scaffold2879_contigs=1:25383-25888 Augustus predicted protein sequence Tobacco scaffold2879_contigs=1~25383-25888 DUF4473 PF14747.1 g74498.t1 - 0.0038 17.4 1.6 0.0057 16.8 1.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4473) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:432603-432851 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~432603-432851 DUF3135 PF11333.3 g106187.t1 - 0.11 12.6 0.1 0.24 11.5 0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3135) | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:53756-54067 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~53756-54067 P33MONOX PF15302.1 g89606.t1 - 0.13 11.8 0.1 0.13 11.8 0 1.1 1 0 0 1 1 1 0 P33 mono-oxygenase | Ref_seq=scaffold1950_contigs=8, transcript_loc=scaffold1950_contigs=8:213118-213564 Augustus predicted protein sequence Tobacco scaffold1950_contigs=8~213118-213564 Prolamin_like PF05617.6 g129386.t1 - 0.0058 16.7 5.2 0.0075 16.3 3.6 1.3 1 0 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold2946_contigs=1, transcript_loc=scaffold2946_contigs=1:15424-15705 Augustus predicted protein sequence Tobacco scaffold2946_contigs=1~15424-15705 Transposase_28 PF04195.7 g69683.t1 - 0.002 17.4 0.1 0.0026 17 0 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:887878-888621 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~887878-888621 SPARC_Ca_bdg PF10591.4 g45025.t1 - 0.033 14.1 0 0.035 14.1 0 1.2 1 0 0 1 1 1 0 Secreted protein acidic and rich in cysteine Ca binding region | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:245504-246128 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~245504-246128 DUF4135 PF13575.1 g68589.t1 - 0.073 12 0.1 0.1 11.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:536678-537764 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~536678-537764 NnrU PF07298.6 g13839.t1 - 0.12 11.7 0.8 0.15 11.4 0.6 1.1 1 0 0 1 1 1 0 NnrU protein | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:175755-176733 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~175755-176733 DUF1347 PF07079.6 g98544.t1 - 0.053 11.7 0.1 0.062 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:129834-130289 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~129834-130289 PaaSYMP PF14738.1 g111897.t1 - 0.03 14 1.9 0.03 14 1.3 1.1 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:48532-48750 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~48532-48750 IL13 PF03487.8 g23102.t1 - 1.8 8.3 3.7 1.8 8.3 1.5 1.8 1 1 0 1 1 1 0 Interleukin-13 | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:108173-108628 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~108173-108628 DEC-1_N PF04625.8 g32391.t1 - 0.089 11.4 2.6 0.094 11.3 1.8 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:43459-43716 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~43459-43716 NST1 PF13945.1 g31058.t1 - 0.12 12.3 3.2 0.12 12.4 2.2 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold784_contigs=2, transcript_loc=scaffold784_contigs=2:59489-59692 Augustus predicted protein sequence Tobacco scaffold784_contigs=2~59489-59692 NIR_SIR PF01077.17 g33546.t1 - 0.13 11.6 0 0.16 11.3 0 1.2 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:42740-43027 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~42740-43027 VitD-bind_III PF09164.5 g126964.t1 - 0.098 12.2 1 0.17 11.4 0.7 1.4 1 0 0 1 1 1 0 Vitamin D binding protein, domain III | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:30552-30983 Augustus predicted protein sequence Tobacco scaffold2810_contigs=1~30552-30983 TOBE PF03459.12 g24002.t1 - 0.0052 16.8 3.4 3.2 7.9 0.1 3.9 2 2 1 3 3 3 2 TOBE domain | Ref_seq=scaffold657_contigs=4, transcript_loc=scaffold657_contigs=4:36888-37517 Augustus predicted protein sequence Tobacco scaffold657_contigs=4~36888-37517 Myc_target_1 PF15179.1 g71128.t1 - 0.043 13.3 0 0.051 13.1 0 1 1 0 0 1 1 1 0 Myc target protein 1 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:78042-79091 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~78042-79091 YdjO PF14169.1 g53502.t1 - 0.037 13.4 0.1 0.073 12.5 0.1 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:482969-485545 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~482969-485545 Remorin_N PF03766.8 g15571.t1 - 0.0046 16.7 0.4 0.0076 15.9 0.3 1.4 1 0 0 1 1 1 1 Remorin, N-terminal region | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:605990-606205 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~605990-606205 DUF4139 PF13598.1 g71919.t1 - 0.039 13.2 1.7 0.044 13 1.2 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:129627-130301 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~129627-130301 ATHILA PF03078.10 g112291.t1 - 0.00008 21.4 0 0.000087 21.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:28398-28691 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~28398-28691 DUF4329 PF14220.1 g97171.t1 - 0.033 14.1 0.6 0.042 13.8 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4329) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:192126-192713 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~192126-192713 Carboxyl_trans PF01039.17 g11979.t1 - 0.13 10.5 0.1 0.15 10.3 0.1 1 1 0 0 1 1 1 0 Carboxyl transferase domain | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:123804-124046 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~123804-124046 zf-CCHC PF00098.18 g96075.t1 - 0.00039 20.2 7.3 0.00082 19.1 5.1 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2092_contigs=15, transcript_loc=scaffold2092_contigs=15:9373-9663 Augustus predicted protein sequence Tobacco scaffold2092_contigs=15~9373-9663 DUF4357 PF14267.1 g83181.t1 - 0.071 12.7 0 0.16 11.5 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4357) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:258657-260059 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~258657-260059 OAD_gamma PF04277.8 g52005.t1 - 0.004 17.4 0.8 0.0063 16.8 0.5 1.4 1 1 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:151633-151857 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~151633-151857 A2M PF00207.17 g48703.t1 - 0.12 12 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:175197-175430 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~175197-175430 DNase_NucA_NucB PF14040.1 g105431.t1 - 0.097 12.8 0 0.15 12.2 0 1.3 1 0 0 1 1 1 0 Deoxyribonuclease NucA/NucB | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:139562-140512 Augustus predicted protein sequence Tobacco scaffold2355_contigs=18~139562-140512 DUF1032 PF06278.6 g74156.t1 - 0.94 7.8 17.4 1.2 7.4 12.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:626542-626877 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~626542-626877 YL1 PF05764.8 g50623.t1 - 0.00026 20.6 7.8 0.00034 20.3 5.4 1.1 1 0 0 1 1 1 1 YL1 nuclear protein | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:80110-80998 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~80110-80998 SRC-1 PF08832.5 g85948.t1 - 0.12 13.1 0.2 0.15 12.7 0.1 1.3 1 0 0 1 1 1 0 Steroid receptor coactivator | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:204766-205062 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~204766-205062 Regulator_TrmB PF11495.3 g54422.t1 - 0.049 12.6 0.2 0.055 12.4 0.2 1.1 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:387410-387628 Augustus predicted protein sequence Tobacco scaffold1207_contigs=28~387410-387628 PMD PF10536.4 g61501.t1 - 0.048 12.6 0 0.053 12.5 0 1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:327282-327608 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~327282-327608 DpnD-PcfM PF14207.1 g129367.t1 - 0.053 13.2 0.5 0.16 11.7 0.4 1.7 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold2945_contigs=1, transcript_loc=scaffold2945_contigs=1:3928-5424 Augustus predicted protein sequence Tobacco scaffold2945_contigs=1~3928-5424 AgrD PF05931.6 g62473.t1 - 0.14 11.8 1.2 0.27 10.8 0 2 2 0 0 2 2 2 0 Staphylococcal AgrD protein | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:304622-306675 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~304622-306675 ATHILA PF03078.10 g114764.t1 - 0.088 11.3 0 0.1 11.1 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:63742-64035 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~63742-64035 RNA_pol_3_Rpc31 PF11705.3 g36402.t1 - 1.5 8.7 7.6 1.4 8.8 5.3 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold887_contigs=2, transcript_loc=scaffold887_contigs=2:2967-3194 Augustus predicted protein sequence Tobacco scaffold887_contigs=2~2967-3194 CENP-F_leu_zip PF10473.4 g7654.t1 - 0.041 13.7 4.1 0.059 13.2 2.9 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold316_contigs=3, transcript_loc=scaffold316_contigs=3:41384-42183 Augustus predicted protein sequence Tobacco scaffold316_contigs=3~41384-42183 PAT1 PF09770.4 g94735.t1 - 8.1 4.5 12.8 9.9 4.2 8.9 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:13298-15730 Augustus predicted protein sequence Tobacco scaffold2046_contigs=5~13298-15730 RmuC PF02646.11 g70742.t1 - 0.00071 18.5 0 0.00081 18.3 0 1 1 0 0 1 1 1 1 RmuC family | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:87757-90484 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~87757-90484 RasGEF_N PF00618.15 g118634.t1 - 0.081 13 0.4 0.16 12 0.1 1.6 1 1 1 2 2 2 0 RasGEF N-terminal motif | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:287196-287477 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~287196-287477 DUF1951 PF09188.5 g76122.t1 - 0.026 14.4 0.2 0.039 13.9 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1951) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:255496-255741 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~255496-255741 Dickkopf_N PF04706.7 g43622.t1 - 0.0094 16 3.8 0.016 15.3 2.6 1.4 1 0 0 1 1 1 1 Dickkopf N-terminal cysteine-rich region | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:173920-175295 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~173920-175295 DegS PF05384.6 g45078.t1 - 0.00058 19 0.2 0.00088 18.5 0.1 1.2 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:354072-356494 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~354072-356494 Toxin_25 PF08095.6 g903.t1 - 0.14 11.9 0.5 0.32 10.7 0.4 1.7 1 0 0 1 1 1 0 Hefutoxin family | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:90721-92368 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~90721-92368 zf-BED PF02892.10 g40295.t1 - 0.013 15.2 2.2 0.026 14.2 1.5 1.5 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:55085-55750 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~55085-55750 IBV_3A PF03617.8 g39825.t1 - 0.035 13.8 1.1 0.061 13 0.8 1.4 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:294080-294505 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~294080-294505 DHHA1 PF02272.14 g69966.t1 - 1.6 8.4 8.1 23 4.7 4.2 2.2 1 1 1 2 2 2 0 DHHA1 domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:665700-665963 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~665700-665963 PLA2_inh PF02988.10 g88949.t1 - 0.00024 21.4 3.1 0.00049 20.4 0.1 2.2 2 0 0 2 2 2 1 Phospholipase A2 inhibitor | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:278666-279235 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~278666-279235 MTBP_C PF14920.1 g120966.t1 - 3.2 7.1 9.2 1.6 8.1 4.9 1.4 1 1 0 1 1 1 0 MDM2-binding | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:113285-114210 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~113285-114210 UBA_e1_thiolCys PF10585.4 g126089.t1 - 0.03 13.6 0.2 0.047 13 0.1 1.3 1 0 0 1 1 1 0 Ubiquitin-activating enzyme active site | Ref_seq=scaffold2787_contigs=1, transcript_loc=scaffold2787_contigs=1:17276-17551 Augustus predicted protein sequence Tobacco scaffold2787_contigs=1~17276-17551 PP_M1 PF03012.9 g103526.t1 - 0.12 11.7 0 0.12 11.7 0 1 1 0 0 1 1 1 0 Phosphoprotein | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:950204-950779 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~950204-950779 HTH_WhiA PF02650.9 g77647.t1 - 0.12 12.7 0 0.15 12.4 0 1.1 1 0 0 1 1 1 0 WhiA C-terminal HTH domain | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:20662-20892 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~20662-20892 Archaeal_AmoA PF12942.2 g60116.t1 - 0.047 13.4 0.2 0.086 12.6 0.1 1.4 1 1 0 1 1 1 0 Archaeal ammonia monooxygenase subunit A (AmoA) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:47834-49652 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~47834-49652 Phage_Treg PF04761.7 g114621.t1 - 0.11 12.2 0.2 0.25 11.1 0.1 1.7 1 1 1 2 2 2 0 Lactococcus bacteriophage putative transcription regulator | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:100224-101621 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~100224-101621 Peptidase_C80 PF11713.3 g44329.t1 - 0.016 15 0 0.018 14.8 0 1.2 1 0 0 1 1 1 0 Peptidase C80 family | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:263655-265903 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~263655-265903 HTH_31 PF13560.1 g7587.t1 - 0.037 14.2 2.4 0.07 13.3 1.7 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:421198-421500 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~421198-421500 DBD_Tnp_Mut PF03108.10 g111148.t1 - 0.0079 15.7 0 0.012 15.1 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:141819-142253 Augustus predicted protein sequence Tobacco scaffold2580_contigs=9~141819-142253 Bap31 PF05529.7 g84730.t1 - 2.2 7.6 5.1 3.1 7.2 3.6 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:271115-272218 Augustus predicted protein sequence Tobacco scaffold1827_contigs=21~271115-272218 Innate_immun PF12782.2 g84464.t1 - 0.36 10 5.2 0.45 9.7 3.6 1.1 1 0 0 1 1 1 0 Invertebrate innate immunity transcript family | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:51898-52218 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~51898-52218 Big_3 PF07523.7 g54198.t1 - 0.0031 17.5 0.1 0.0051 16.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:121484-122557 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~121484-122557 YkuI_C PF10388.4 g40571.t1 - 0.061 13 0.1 0.086 12.5 0.1 1.1 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:32953-33700 Augustus predicted protein sequence Tobacco scaffold979_contigs=3~32953-33700 Toxin_YhaV PF11663.3 g96277.t1 - 0.14 11.9 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Toxin with endonuclease activity YhaV | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:295452-295910 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~295452-295910 DUF641 PF04859.7 g75201.t1 - 0.00084 19 1.6 0.001 18.8 1.1 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:169765-170129 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~169765-170129 Usp PF00582.21 g88299.t1 - 0.0079 16.3 0.3 0.011 15.9 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:30323-31021 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~30323-31021 DivIC PF04977.10 g82127.t1 - 0.021 14.3 0.1 0.1 12 0 1.8 2 0 0 2 2 2 0 Septum formation initiator | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:714319-714549 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~714319-714549 DUF1264 PF06884.6 g77534.t1 - 0.043 13.2 0 0.046 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:294384-294623 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~294384-294623 ER-remodelling PF14755.1 g26348.t1 - 0.19 11.8 2.5 0.23 11.5 0.9 1.7 1 1 1 2 2 2 0 Intracellular membrane remodeller | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:149843-150382 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~149843-150382 Hairy_orange PF07527.8 g53379.t1 - 0.16 11.7 1 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 Hairy Orange | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:196379-197321 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~196379-197321 CCDC-167 PF15188.1 g120672.t1 - 0.1 12.5 1.2 0.18 11.8 0.8 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:36930-37536 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~36930-37536 PHB_acc PF05233.8 g52000.t1 - 0.14 11.9 0.2 0.95 9.2 0 2.3 2 0 0 2 2 2 0 PHB accumulation regulatory domain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:119765-122398 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~119765-122398 DUF290 PF01060.18 g3279.t1 - 0.1 12.6 0.1 0.4 10.7 0 2 2 0 0 2 2 2 0 Transthyretin-like family | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:175460-176044 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~175460-176044 Vac7 PF12751.2 g29063.t1 - 0.099 11.4 0.7 0.41 9.4 0 1.8 2 0 0 2 2 2 0 Vacuolar segregation subunit 7 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:30241-31049 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~30241-31049 DUF605 PF04652.11 g109666.t1 - 0.74 9.1 6.2 0.9 8.8 4.3 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:255242-255898 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~255242-255898 PAT1 PF09770.4 g71720.t1 - 1.7 6.7 8.9 1.9 6.6 6.2 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:325638-326431 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~325638-326431 Bromo_TP PF07524.8 g12975.t1 - 0.12 12 0 24 4.7 0 2.5 2 0 0 2 2 2 0 Bromodomain associated | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:40279-41664 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~40279-41664 zf-CCHC PF00098.18 g40427.t1 - 0.0012 18.7 0.6 0.0018 18 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:155866-156543 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~155866-156543 DUF2005 PF09407.5 g108024.t1 - 0.07 11.8 3 1.1 7.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2005) | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:131468-132132 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~131468-132132 L31 PF09784.4 g129082.t1 - 0.021 14.8 0.8 0.036 14.1 0.6 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L31 | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:10168-10985 Augustus predicted protein sequence Tobacco scaffold2915_contigs=1~10168-10985 IFT43 PF15305.1 g69276.t1 - 0.074 13 3.7 0.1 12.5 2.4 1.4 1 1 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:132046-132375 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~132046-132375 NCD3G PF07562.9 g64163.t1 - 0.063 13 2 0.097 12.4 1.4 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:48461-49580 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~48461-49580 YARHG PF13308.1 g22695.t1 - 0.029 13.9 0.1 0.081 12.4 0.1 1.7 1 1 0 1 1 1 0 YARHG domain | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:133008-138128 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~133008-138128 Nup88 PF10168.4 g110498.t1 - 0.072 10.9 0 0.075 10.8 0 1.1 1 0 0 1 1 1 0 Nuclear pore component | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:93288-93590 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~93288-93590 RVT_3 PF13456.1 g68211.t1 - 0.00000011 31.4 0.3 0.0000075 25.6 0 2.2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:370039-370680 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~370039-370680 Curlin_rpt PF07012.7 g6811.t1 - 0.039 13.6 0.1 9.2 6 0 2.1 2 0 0 2 2 2 0 Curlin associated repeat | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:24497-24897 Augustus predicted protein sequence Tobacco scaffold304_contigs=1~24497-24897 DUF4628 PF15429.1 g34322.t1 - 0.037 13.4 3.6 0.039 13.3 2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4628) | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:8867-9475 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~8867-9475 SLR1-BP PF07333.7 g121396.t1 - 0.017 15.3 5.1 0.032 14.4 3.6 1.5 1 1 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1093727-1094937 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1093727-1094937 Phage_holin_3 PF05106.7 g11918.t1 - 0.047 13.6 0 0.071 13.1 0 1.3 1 1 0 1 1 1 0 Phage holin family (Lysis protein S) | Ref_seq=scaffold417_contigs=2, transcript_loc=scaffold417_contigs=2:48489-48761 Augustus predicted protein sequence Tobacco scaffold417_contigs=2~48489-48761 Arabinose_trans PF04602.7 g29683.t1 - 0.026 12.7 0 0.031 12.4 0 1 1 0 0 1 1 1 0 Mycobacterial cell wall arabinan synthesis protein | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:64241-64633 Augustus predicted protein sequence Tobacco scaffold765_contigs=9~64241-64633 Ribosomal_S14 PF00253.16 g91291.t1 - 0.21 10.9 2 0.3 10.4 1.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:275593-275799 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~275593-275799 DUF2815 PF10991.3 g68751.t1 - 0.079 12.4 0 0.08 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2815) | Ref_seq=scaffold1479_contigs=3, transcript_loc=scaffold1479_contigs=3:8615-9004 Augustus predicted protein sequence Tobacco scaffold1479_contigs=3~8615-9004 Ribosomal_S20p PF01649.13 g83909.t1 - 0.024 14.9 0.3 0.042 14.2 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein S20 | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:71286-71603 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~71286-71603 Vps5 PF09325.5 g2264.t1 - 0.018 14.3 0.6 0.025 13.8 0.4 1.1 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold206_contigs=1, transcript_loc=scaffold206_contigs=1:8209-9910 Augustus predicted protein sequence Tobacco scaffold206_contigs=1~8209-9910 ATP-synt_E_2 PF08112.6 g10866.t1 - 0.088 12.8 0 0.2 11.7 0 1.6 2 0 0 2 2 2 0 ATP synthase epsilon subunit | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:58056-60392 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~58056-60392 UBN2 PF14223.1 g123609.t1 - 0.000066 22.6 0 0.00011 22 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:109550-112043 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~109550-112043 RnaseA PF00074.15 g43104.t1 - 0.047 13.9 1.1 0.055 13.7 0.7 1.3 1 1 0 1 1 1 0 Pancreatic ribonuclease | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:469154-469559 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~469154-469559 Nop14 PF04147.7 g56750.t1 - 0.00091 17.2 14.2 0.001 17 9.9 1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:763651-765893 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~763651-765893 DUF740 PF05340.7 g100844.t1 - 0.9 7.8 3.9 1.1 7.5 2.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF740) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:179168-179832 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~179168-179832 Tuberin PF03542.11 g55315.t1 - 0.046 12.7 0.2 0.052 12.6 0.1 1.1 1 0 0 1 1 1 0 Tuberin | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:66252-66900 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~66252-66900 4_1_CTD PF05902.8 g109899.t1 - 0.075 13 0.1 0.092 12.7 0.1 1.2 1 0 0 1 1 1 0 4.1 protein C-terminal domain (CTD) | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:453622-454056 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~453622-454056 RVP_2 PF08284.6 g36974.t1 - 0.000000074 32.4 0.1 0.000000084 32.2 0.1 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:35407-35694 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~35407-35694 RseA_C PF03873.8 g127561.t1 - 0.055 13.3 1 6.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Anti sigma-E protein RseA, C-terminal domain | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:56086-56599 Augustus predicted protein sequence Tobacco scaffold2829_contigs=1~56086-56599 DNA_pol_B_exo1 PF03104.14 g59322.t1 - 0.021 13.7 1.6 2.5 6.8 0.2 2 1 1 1 2 2 2 0 DNA polymerase family B, exonuclease domain | Ref_seq=scaffold1289_contigs=4, transcript_loc=scaffold1289_contigs=4:8385-9752 Augustus predicted protein sequence Tobacco scaffold1289_contigs=4~8385-9752 PI-PLC-X PF00388.14 g97795.t1 - 0.14 11.5 0 0.21 11 0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:182693-183061 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~182693-183061 Transposase_23 PF03017.9 g47067.t1 - 0.08 12.4 0 0.1 12 0 1.2 1 0 0 1 1 1 0 TNP1/EN/SPM transposase | Ref_seq=scaffold1084_contigs=1, transcript_loc=scaffold1084_contigs=1:96988-98122 Augustus predicted protein sequence Tobacco scaffold1084_contigs=1~96988-98122 Glyco_hydro_1 PF00232.13 g87691.t1 - 0.012 13.8 0.2 0.016 13.4 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 1 | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:96711-97169 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~96711-97169 Bac_rhamnosid_N PF08531.5 g123216.t1 - 0.12 11.8 0.1 0.3 10.5 0 1.6 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:97976-99163 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~97976-99163 Ran-binding PF05508.6 g130101.t1 - 0.11 11.3 0.2 0.15 10.9 0.1 1.1 1 0 0 1 1 1 0 RanGTP-binding protein | Ref_seq=scaffold3452_contigs=1, transcript_loc=scaffold3452_contigs=1:180-1065 Augustus predicted protein sequence Tobacco scaffold3452_contigs=1~180-1065 DUF3716 PF12511.3 g80855.t1 - 0.25 10.9 4.1 0.45 10.1 2.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3716) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:181364-181705 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~181364-181705 Dehydrin PF00257.14 g40651.t1 - 0.0093 16.3 0.3 0.0093 16.3 0.2 1.1 1 0 0 1 1 1 1 Dehydrin | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:218495-220352 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~218495-220352 SLR1-BP PF07333.7 g9955.t1 - 0.16 12.2 11.4 0.23 11.7 7.9 1.3 1 0 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold382_contigs=18, transcript_loc=scaffold382_contigs=18:65233-65619 Augustus predicted protein sequence Tobacco scaffold382_contigs=18~65233-65619 DBD_Tnp_Mut PF03108.10 g22827.t1 - 0.000000075 31.8 0.1 0.000000075 31.8 0 1.5 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:472871-473590 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~472871-473590 SWIM PF04434.12 g49740.t1 - 0.00076 18.8 1.8 0.0018 17.7 1.2 1.6 1 0 0 1 1 1 1 SWIM zinc finger | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:56070-56510 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~56070-56510 CAF-1_p150 PF11600.3 g84034.t1 - 0.000027 23.6 24.5 0.000027 23.6 17 2.1 2 0 0 2 2 2 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:480064-480909 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~480064-480909 Antimicrobial17 PF08129.6 g75282.t1 - 2.4 7.9 4.2 15 5.4 0.1 2.8 3 0 0 3 3 3 0 Alpha/beta enterocin family | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:84956-86990 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~84956-86990 Bim_N PF06773.6 g31335.t1 - 0.78 9.5 4.5 0.45 10.2 1.2 2.1 2 1 0 2 2 2 0 Bim protein N-terminus | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:271606-271878 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~271606-271878 FH2 PF02181.18 g28884.t1 - 0.0085 15 0 0.0096 14.8 0 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:539772-540209 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~539772-540209 CENP-F_C_Rb_bdg PF10490.4 g114741.t1 - 0.000021 23.7 0.5 0.19 11 0 2.4 2 0 0 2 2 2 2 Rb-binding domain of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:10993-11680 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~10993-11680 ATP-synt PF00231.14 g75920.t1 - 0.087 12.1 0 0.089 12.1 0 1 1 0 0 1 1 1 0 ATP synthase | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:205905-207651 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~205905-207651 CAF-1_p150 PF11600.3 g87490.t1 - 0.08 12.3 34.3 0.1 11.9 23.8 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:223512-223940 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~223512-223940 Retrotrans_gag PF03732.12 g20178.t1 - 0.016 15.2 0 0.03 14.3 0 1.5 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:246815-247186 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~246815-247186 ATHILA PF03078.10 g120629.t1 - 0.0018 16.9 0 0.0021 16.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:347359-348123 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~347359-348123 CD24 PF14984.1 g99461.t1 - 0.48 10.2 3.4 6 6.7 0.2 2.6 2 0 0 2 2 2 0 CD24 protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:612312-612659 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~612312-612659 MAT1 PF06391.8 g37767.t1 - 0.026 14 2.1 0.034 13.7 1.4 1.2 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:365998-366752 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~365998-366752 MLTD_N PF06474.7 g74685.t1 - 0.02 15.1 0 1.5 9 0 2.5 3 0 0 3 3 3 0 MltD lipid attachment motif | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:79742-79996 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~79742-79996 AAA_27 PF13514.1 g49810.t1 - 0.037 11.7 1 0.046 11.4 0.7 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:174540-174947 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~174540-174947 DHHA1 PF02272.14 g50002.t1 - 0.16 11.7 13.8 0.71 9.6 0.1 3.7 3 1 1 4 4 4 0 DHHA1 domain | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:26430-27028 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~26430-27028 ATHILA PF03078.10 g59827.t1 - 0.0015 17.2 0.5 0.3 9.6 0.2 2 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:267550-268155 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~267550-268155 ETF_alpha PF00766.14 g84950.t1 - 0.11 12.1 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein FAD-binding domain | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:235858-236151 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~235858-236151 DUF3471 PF11954.3 g64800.t1 - 0.0035 17.1 0.1 0.011 15.5 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3471) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:192113-192637 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~192113-192637 UBN2 PF14223.1 g10.t1 - 0.063 13 0 0.075 12.8 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:35215-35812 Augustus predicted protein sequence Tobacco scaffold1_contigs=5~35215-35812 Not3 PF04065.10 g8484.t1 - 0.0043 16.3 7.3 0.0049 16.1 5 1.1 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:15230-15610 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~15230-15610 DUF1625 PF07787.7 g85862.t1 - 0.15 11.2 0 0.2 10.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:11009-11401 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~11009-11401 DUF995 PF06191.7 g107872.t1 - 0.023 14 2.5 0.027 13.8 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF995) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:392577-394901 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~392577-394901 DUF2457 PF10446.4 g81556.t1 - 0.0039 15.9 3 0.0048 15.6 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:227916-228305 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~227916-228305 FoP_duplication PF13865.1 g60629.t1 - 5 7.6 9 8.6 6.8 6.2 1.4 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:105228-105548 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~105228-105548 DUF1880 PF08976.6 g9885.t1 - 1.4 9 4.2 2.1 8.5 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:255792-256196 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~255792-256196 Clat_adaptor_s PF01217.15 g130260.t1 - 0.033 13.8 0.2 1.8 8.2 0.1 2.1 1 1 1 2 2 2 0 Clathrin adaptor complex small chain | Ref_seq=scaffold3805_contigs=1, transcript_loc=scaffold3805_contigs=1:518-1312 Augustus predicted protein sequence Tobacco scaffold3805_contigs=1~518-1312 Cortex-I_coil PF09304.5 g69032.t1 - 0.013 15.5 2.1 0.017 15.1 1.4 1.1 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:327107-327471 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~327107-327471 DUF1554 PF07588.6 g10929.t1 - 0.074 12.5 0.7 0.13 11.7 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1554) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:235310-238732 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~235310-238732 Cut8_N PF14482.1 g51493.t1 - 0.073 13 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:152842-153066 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~152842-153066 DUF3114 PF11311.3 g55033.t1 - 0.16 11.2 0.1 0.21 10.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3114) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:420142-420495 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~420142-420495 Poty_PP PF08440.5 g19073.t1 - 0.12 11.4 0.1 0.15 11.1 0.1 1.1 1 0 0 1 1 1 0 Potyviridae polyprotein | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:231547-232829 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~231547-232829 DNA_Packaging PF11053.3 g104114.t1 - 0.099 12.2 0.2 0.1 12.2 0.1 1.1 1 0 0 1 1 1 0 Terminase DNA packaging enzyme | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:23642-23848 Augustus predicted protein sequence Tobacco scaffold2332_contigs=1~23642-23848 DUF1091 PF06477.8 g70383.t1 - 0.028 14.8 0 0.03 14.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:423634-423870 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~423634-423870 HMD PF03201.11 g5811.t1 - 0.07 13 0 0.11 12.3 0 1.3 1 0 0 1 1 1 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:19984-21134 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~19984-21134 ATP-synt_B PF00430.13 g122588.t1 - 0.061 13.1 4.6 0.073 12.8 3.2 1.1 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:328019-328405 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~328019-328405 DUF1180 PF06679.7 g27718.t1 - 0.06 13.2 0.6 0.088 12.6 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:175808-176801 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~175808-176801 TPR_MLP1_2 PF07926.7 g1414.t1 - 0.0098 15.6 4.6 0.016 14.9 3.2 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:82905-84994 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~82905-84994 RNase_H2-Ydr279 PF09468.5 g13719.t1 - 0.18 10.9 6 0.19 10.8 4.1 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:13746-14267 Augustus predicted protein sequence Tobacco scaffold453_contigs=2~13746-14267 BRF1 PF07741.8 g116109.t1 - 0.0055 16.8 0.5 0.0097 16.1 0.4 1.4 1 1 0 1 1 1 1 Brf1-like TBP-binding domain | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:659599-660066 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~659599-660066 DUF720 PF05302.6 g61957.t1 - 0.11 12.2 0.3 0.17 11.6 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF720) | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:118614-119502 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~118614-119502 MIP-T3 PF10243.4 g1187.t1 - 0.007 14.8 1.1 0.009 14.5 0.8 1.1 1 0 0 1 1 1 1 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold117_contigs=4, transcript_loc=scaffold117_contigs=4:7629-8204 Augustus predicted protein sequence Tobacco scaffold117_contigs=4~7629-8204 Tropomyosin_1 PF12718.2 g5152.t1 - 0.0063 16.3 2.6 0.0086 15.9 1.8 1.1 1 0 0 1 1 1 1 Tropomyosin like | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:34153-34578 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~34153-34578 FAM176 PF14851.1 g83397.t1 - 0.097 12.3 2.3 0.11 12.1 1.6 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:37259-37654 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~37259-37654 BTV_NS2 PF04514.7 g62411.t1 - 0.068 12 2.3 0.079 11.8 1.6 1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:159257-159625 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~159257-159625 PilX_N PF14341.1 g58400.t1 - 0.06 13 0.4 0.13 11.8 0.3 1.6 1 0 0 1 1 1 0 PilX N-terminal | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:394975-395703 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~394975-395703 RVT_3 PF13456.1 g102085.t1 - 0.019 14.7 0 0.024 14.4 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:55819-56193 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~55819-56193 DUF241 PF03087.9 g49643.t1 - 0.041 13.3 0.4 0.048 13.1 0.3 1.2 1 0 0 1 1 1 0 Arabidopsis protein of unknown function | Ref_seq=scaffold1131_contigs=3, transcript_loc=scaffold1131_contigs=3:86975-87301 Augustus predicted protein sequence Tobacco scaffold1131_contigs=3~86975-87301 bPH_6 PF10756.4 g44794.t1 - 2.8 7.8 6.5 5.2 7 1.8 2.5 1 1 1 2 2 2 0 Bacterial PH domain | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:171996-172415 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~171996-172415 HSBP1 PF06825.7 g40840.t1 - 0.81 9.3 6.2 7 6.3 0.2 3.6 4 0 0 4 4 4 0 Heat shock factor binding protein 1 | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:42942-43497 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~42942-43497 zf-CCHC PF00098.18 g125335.t1 - 0.00029 20.6 0.2 0.0005 19.8 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:48292-48864 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~48292-48864 DUF2694 PF10904.3 g67114.t1 - 0.097 12.6 0 0.25 11.3 0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:537379-538338 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~537379-538338 Drf_FH1 PF06346.7 g10935.t1 - 0.019 14.4 0 0.025 14 0 1.1 1 0 0 1 1 1 0 Formin Homology Region 1 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:270073-270655 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~270073-270655 NPR3 PF03666.8 g35584.t1 - 0.0056 15.2 0.3 0.0065 15 0.2 1 1 0 0 1 1 1 1 Nitrogen Permease regulator of amino acid transport activity 3 | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:131862-132197 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~131862-132197 XAP5 PF04921.9 g73092.t1 - 0.043 13.3 0 0.052 13.1 0 1.1 1 0 0 1 1 1 0 XAP5, circadian clock regulator | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:26672-27190 Augustus predicted protein sequence Tobacco scaffold1529_contigs=6~26672-27190 DUF1395 PF07160.7 g106308.t1 - 0.11 11.9 0.9 4.2 6.7 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:136178-136936 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~136178-136936 TOBE PF03459.12 g77707.t1 - 0.19 11.8 0.9 9.7 6.3 0.1 3.3 3 1 1 4 4 4 0 TOBE domain | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:172783-173232 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~172783-173232 DegS PF05384.6 g998.t1 - 0.0011 18.1 1.1 0.0014 17.8 0.7 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:27262-27677 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~27262-27677 P34-Arc PF04045.9 g62493.t1 - 0.1 11.9 0.9 0.81 8.9 0.1 1.9 1 1 1 2 2 2 0 Arp2/3 complex, 34 kD subunit p34-Arc | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:64623-64868 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~64623-64868 RR_TM4-6 PF06459.7 g89695.t1 - 0.039 13.8 0 0.052 13.4 0 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:184821-186267 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~184821-186267 Ribonuc_2-5A PF06479.7 g118678.t1 - 0.057 13.2 1.3 0.056 13.2 0.9 1 1 0 0 1 1 1 0 Ribonuclease 2-5A | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:487700-488777 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~487700-488777 Phage_connector PF05352.7 g76685.t1 - 0.028 13.6 0.1 0.032 13.4 0.1 1.1 1 0 0 1 1 1 0 Phage Connector (GP10) | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:94328-94776 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~94328-94776 DUF4279 PF14106.1 g95753.t1 - 0.033 14 0.2 2.7 7.9 0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:266920-267423 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~266920-267423 DUF1860 PF08949.5 g58564.t1 - 0.11 12 0 0.17 11.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1860) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:174270-177296 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~174270-177296 TipAS PF07739.8 g127184.t1 - 0.067 13.5 1.6 0.23 11.7 0.7 1.9 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:55454-56076 Augustus predicted protein sequence Tobacco scaffold2815_contigs=1~55454-56076 ATP-synt_B PF00430.13 g125247.t1 - 0.73 9.6 15.6 0.84 9.4 10.8 1.1 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:132067-132315 Augustus predicted protein sequence Tobacco scaffold2769_contigs=1~132067-132315 Vir_act_alpha_C PF10400.4 g20351.t1 - 0.081 13.3 0.3 0.2 12 0.2 1.6 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:107254-108118 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~107254-108118 TPR_7 PF13176.1 g96904.t1 - 0.0074 16 0 0.012 15.3 0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:73971-74210 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~73971-74210 Pox_F11 PF04943.7 g123185.t1 - 0.017 14 0.2 0.019 13.8 0.1 1 1 0 0 1 1 1 0 Poxvirus F11 protein | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:35463-35768 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~35463-35768 FAST_2 PF08368.7 g28709.t1 - 0.13 12.6 0.1 0.74 10.2 0 2.2 3 0 0 3 3 3 0 FAST kinase-like protein, subdomain 2 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:92423-93115 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~92423-93115 Prefoldin_2 PF01920.15 g101094.t1 - 0.0056 16.4 1.5 0.17 11.6 0 2.2 1 1 1 2 2 2 1 Prefoldin subunit | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:61474-62085 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~61474-62085 DBD_Tnp_Mut PF03108.10 g38996.t1 - 1.9E-009 36.9 0.1 4.1E-009 35.8 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:146559-147545 Augustus predicted protein sequence Tobacco scaffold947_contigs=9~146559-147545 Pox_A6 PF04924.7 g105980.t1 - 0.083 11.6 0 0.083 11.6 0 1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1270466-1270769 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~1270466-1270769 Sigma70_ner PF04546.8 g70000.t1 - 0.0044 16.6 1.6 0.0069 16 1.1 1.2 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:58697-61623 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~58697-61623 DBD_Tnp_Mut PF03108.10 g44739.t1 - 0.00045 19.7 0.6 0.0012 18.3 0 2 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:185160-186720 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~185160-186720 DUF4413 PF14372.1 g118180.t1 - 0.056 13.4 0.7 0.12 12.3 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4413) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:13372-13866 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~13372-13866 APG17 PF04108.7 g128316.t1 - 0.048 12.4 0.1 0.062 12 0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:42583-43904 Augustus predicted protein sequence Tobacco scaffold2861_contigs=1~42583-43904 DBD_Tnp_Mut PF03108.10 g102341.t1 - 2.9E-009 36.3 0.1 5.3E-009 35.5 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:77356-80058 Augustus predicted protein sequence Tobacco scaffold2237_contigs=22~77356-80058 Methyltransf_29 PF03141.11 g12665.t1 - 0.013 13.9 0 0.013 13.8 0 1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:224914-225243 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~224914-225243 Chon_Sulph_att PF06566.6 g71581.t1 - 0.13 11.8 10.8 0.17 11.4 7.5 1.2 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:66049-66369 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~66049-66369 SHS2_Rpb7-N PF03876.12 g36582.t1 - 0.026 14.6 0 0.049 13.7 0 1.4 1 0 0 1 1 1 0 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:41649-42628 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~41649-42628 MscS_porin PF12795.2 g124557.t1 - 0.019 14.2 0.5 0.023 14 0.3 1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:9315-9533 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~9315-9533 VitD-bind_III PF09164.5 g16022.t1 - 0.34 10.5 2.5 0.43 10.2 1.7 1.3 1 1 0 1 1 1 0 Vitamin D binding protein, domain III | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:89844-90074 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~89844-90074 Gag_p24 PF00607.15 g98522.t1 - 0.014 14.9 0 0.016 14.7 0 1.2 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:61367-61615 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~61367-61615 tRNA_SAD PF07973.9 g30664.t1 - 0.11 12.4 0 0.19 11.6 0 1.4 1 0 0 1 1 1 0 Threonyl and Alanyl tRNA synthetase second additional domain | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:116637-116960 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~116637-116960 DUF4219 PF13961.1 g12081.t1 - 0.1 12 0.5 0.17 11.3 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:11896-12171 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~11896-12171 Retrotrans_gag PF03732.12 g33060.t1 - 0.000021 24.4 0 0.000055 23.1 0 1.6 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:268011-269777 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~268011-269777 ABC2_membrane_3 PF12698.2 g105411.t1 - 0.0025 16.9 19.6 0.035 13.1 3 2 2 0 0 2 2 2 2 ABC-2 family transporter protein | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:53902-54381 Augustus predicted protein sequence Tobacco scaffold2355_contigs=18~53902-54381 FH2 PF02181.18 g50933.t1 - 0.016 14.1 0.3 0.021 13.7 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:15648-18117 Augustus predicted protein sequence Tobacco scaffold1148_contigs=4~15648-18117 TnpB_IS66 PF05717.8 g17060.t1 - 0.12 11.7 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 IS66 Orf2 like protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:384261-384557 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~384261-384557 DUF605 PF04652.11 g109709.t1 - 0.089 12.1 8.9 0.1 11.9 6.2 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:350050-351080 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~350050-351080 BHD_2 PF10404.4 g46201.t1 - 0.017 15.4 0 0.025 14.9 0 1.2 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 2 | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:54131-54628 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~54131-54628 UPF0547 PF10571.4 g119579.t1 - 0.06 13 0 0.086 12.5 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2714_contigs=4, transcript_loc=scaffold2714_contigs=4:7933-8527 Augustus predicted protein sequence Tobacco scaffold2714_contigs=4~7933-8527 Plug PF07715.10 g85662.t1 - 0.12 12.6 0.3 0.28 11.5 0.2 1.5 1 1 0 1 1 1 0 TonB-dependent Receptor Plug Domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:296476-297111 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~296476-297111 Sigma70_ner PF04546.8 g127426.t1 - 0.022 14.3 0.2 0.041 13.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold2824_contigs=1, transcript_loc=scaffold2824_contigs=1:63758-64099 Augustus predicted protein sequence Tobacco scaffold2824_contigs=1~63758-64099 VGCC_beta4Aa_N PF12052.3 g107090.t1 - 0.006 16.4 1.4 0.009 15.8 1 1.4 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:628200-628703 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~628200-628703 Ilar_coat PF01787.11 g107261.t1 - 0.093 12.2 0.1 0.097 12.2 0.1 1.1 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1048171-1048473 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1048171-1048473 GP41 PF00517.12 g102488.t1 - 0.015 14.8 0.6 0.016 14.7 0.4 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:14435-14740 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~14435-14740 MATH PF00917.21 g2609.t1 - 0.085 13.1 1 0.11 12.7 0.7 1.2 1 0 0 1 1 1 0 MATH domain | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:17888-18241 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~17888-18241 DUF2303 PF10065.4 g64388.t1 - 0.033 13 0.3 0.042 12.7 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:158407-158745 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~158407-158745 Trypan_PARP PF05887.6 g114008.t1 - 0.42 10.4 10.4 0.68 9.7 7.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:78848-80115 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~78848-80115 Cut8_N PF14482.1 g55613.t1 - 0.089 12.7 4.2 4.3 7.4 0.1 2.7 2 0 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:67724-68755 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~67724-68755 Dodecin PF07311.7 g93978.t1 - 0.15 12.1 1.4 0.26 11.3 1 1.4 1 0 0 1 1 1 0 Dodecin | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:325624-325902 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~325624-325902 Phlebovirus_NSM PF07246.6 g57434.t1 - 0.097 11.8 0.1 0.13 11.3 0.1 1.1 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:165329-168615 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~165329-168615 PITH PF06201.8 g54551.t1 - 0.091 12.5 0 0.093 12.4 0 1 1 0 0 1 1 1 0 PITH domain | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:105841-106137 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~105841-106137 Nuc_recep-AF1 PF11825.3 g65007.t1 - 0.16 11.8 0.2 0.41 10.5 0.1 1.6 1 1 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:198677-198991 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~198677-198991 DERM PF14704.1 g76021.t1 - 0.056 13.4 0.1 0.07 13.1 0 1.1 1 0 0 1 1 1 0 Dermatopontin | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:31047-31468 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~31047-31468 Kelch_1 PF01344.20 g99980.t1 - 1.3 8.6 4.3 3.6 7.2 0.4 2.6 2 1 0 2 2 2 0 Kelch motif | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:125899-127102 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~125899-127102 Prefoldin PF02996.12 g106304.t1 - 0.00069 19.2 0.7 0.0011 18.6 0.5 1.2 1 0 0 1 1 1 1 Prefoldin subunit | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:130305-130874 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~130305-130874 zf-CCHC PF00098.18 g89826.t1 - 0.00022 21 0.9 0.0004 20.1 0.6 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:160408-161016 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~160408-161016 Vir_act_alpha_C PF10400.4 g585.t1 - 0.00065 20 0 0.00074 19.8 0 1 1 0 0 1 1 1 1 Virulence activator alpha C-term | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:22077-22289 Augustus predicted protein sequence Tobacco scaffold31_contigs=1~22077-22289 APG9 PF04109.11 g99413.t1 - 0.12 11.2 0.8 0.13 11.1 0.6 1 1 0 0 1 1 1 0 Autophagy protein Apg9 | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:478450-478767 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~478450-478767 SPOB_ab PF14682.1 g127641.t1 - 0.079 12.7 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Sporulation initiation phospho-transferase B, C-terminal | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:29652-30017 Augustus predicted protein sequence Tobacco scaffold2832_contigs=1~29652-30017 bZIP_2 PF07716.10 g17569.t1 - 0.096 12.5 0.3 0.16 11.7 0.2 1.4 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:187857-189241 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~187857-189241 Gloverin PF10793.4 g26660.t1 - 0.018 14.6 0 0.028 14 0 1.2 1 0 0 1 1 1 0 Gloverin-like protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:105477-106380 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~105477-106380 DUF2708 PF10917.3 g95622.t1 - 0.052 13.3 5.3 0.16 11.7 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2708) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:163960-164581 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~163960-164581 Mg-por_mtran_C PF07109.6 g117055.t1 - 0.071 13.1 0 0.075 13 0 1.2 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold2679_contigs=24, transcript_loc=scaffold2679_contigs=24:566264-566530 Augustus predicted protein sequence Tobacco scaffold2679_contigs=24~566264-566530 ResIII PF04851.10 g12657.t1 - 0.095 12.5 0 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:187108-187485 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~187108-187485 Rab3-GTPase_cat PF13890.1 g129065.t1 - 0.093 12.1 2.8 0.76 9.1 0.6 2.1 2 0 0 2 2 2 0 Rab3 GTPase-activating protein catalytic subunit | Ref_seq=scaffold2913_contigs=1, transcript_loc=scaffold2913_contigs=1:17151-18270 Augustus predicted protein sequence Tobacco scaffold2913_contigs=1~17151-18270 Cation_efflux PF01545.16 g80342.t1 - 0.011 14.7 0 0.013 14.5 0 1 1 0 0 1 1 1 0 Cation efflux family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:98528-99408 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~98528-99408 DUF3894 PF13033.1 g902.t1 - 0.14 12.1 0.3 0.18 11.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3894) | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:89884-90398 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~89884-90398 Vfa1 PF08432.5 g54004.t1 - 0.19 11.7 4.6 0.2 11.6 3.2 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold1195_contigs=2, transcript_loc=scaffold1195_contigs=2:18326-18785 Augustus predicted protein sequence Tobacco scaffold1195_contigs=2~18326-18785 WaaY PF06176.6 g41105.t1 - 0.035 13.3 0.1 0.036 13.2 0 1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:683694-684699 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~683694-684699 Trehalase PF01204.13 g71088.t1 - 0.028 13 3.7 0.035 12.7 2.6 1.1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:12139-12782 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~12139-12782 WEMBL PF05701.6 g63244.t1 - 0.0014 17.1 0.5 0.002 16.6 0.4 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:21847-22278 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~21847-22278 TPPK_C PF12555.3 g21715.t1 - 2 8.2 4.8 3.6 7.3 3.3 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:134327-134701 Augustus predicted protein sequence Tobacco scaffold598_contigs=2~134327-134701 KRTAP PF11759.3 g18077.t1 - 0.01 16 0.7 0.012 15.8 0.5 1.2 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:111495-111710 Augustus predicted protein sequence Tobacco scaffold541_contigs=3~111495-111710 EBV-NA3 PF05009.7 g97097.t1 - 0.064 12.5 1.5 0.073 12.3 1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:538889-539122 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~538889-539122 UBN2 PF14223.1 g55097.t1 - 0.019 14.7 0 0.18 11.5 0 1.9 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1214_contigs=4, transcript_loc=scaffold1214_contigs=4:29215-29618 Augustus predicted protein sequence Tobacco scaffold1214_contigs=4~29215-29618 Serglycin PF04360.7 g129477.t1 - 0.025 14.2 0.1 0.026 14.2 0 1.2 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold2960_contigs=1, transcript_loc=scaffold2960_contigs=1:13805-14017 Augustus predicted protein sequence Tobacco scaffold2960_contigs=1~13805-14017 Bap31 PF05529.7 g65707.t1 - 0.53 9.7 3.4 0.68 9.3 2.3 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:134619-134999 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~134619-134999 HMG_box_2 PF09011.5 g7643.t1 - 0.074 13.4 0.1 0.092 13.1 0.1 1.3 1 0 0 1 1 1 0 HMG-box domain | Ref_seq=scaffold316_contigs=3, transcript_loc=scaffold316_contigs=3:14260-15914 Augustus predicted protein sequence Tobacco scaffold316_contigs=3~14260-15914 RVT_3 PF13456.1 g12098.t1 - 0.025 14.3 0.1 0.17 11.7 0 2.1 1 1 1 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:32557-33084 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~32557-33084 LZ_Tnp_IS66 PF13007.2 g31491.t1 - 3.3 8.4 7 1.2 9.8 0.4 2.1 2 0 0 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:195849-196181 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~195849-196181 Sds3 PF08598.6 g51207.t1 - 0.1 12.1 5 0.15 11.5 3.5 1.3 1 1 0 1 1 1 0 Sds3-like | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:84329-84706 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~84329-84706 RMMBL PF07521.7 g28868.t1 - 0.068 12.9 0 0.12 12.2 0 1.4 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:511241-511552 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~511241-511552 DUF2360 PF10152.4 g28892.t1 - 2.1 8.5 5.9 2.6 8.3 4.1 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:564576-564914 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~564576-564914 DUF4200 PF13863.1 g120573.t1 - 0.049 13.5 9.3 0.59 10 0.6 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:246964-248076 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~246964-248076 RVP_2 PF08284.6 g47298.t1 - 0.000059 23 0 0.000096 22.3 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:30042-31352 Augustus predicted protein sequence Tobacco scaffold1092_contigs=11~30042-31352 Cys_rich_KTR PF14205.1 g73069.t1 - 0.062 12.7 0.9 0.16 11.4 0 2 2 0 0 2 2 2 0 Cysteine-rich KTR | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:172960-173501 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~172960-173501 SWIM PF04434.12 g129552.t1 - 0.00029 20.2 0.1 0.00047 19.5 0 1.3 1 0 0 1 1 1 1 SWIM zinc finger | Ref_seq=scaffold2983_contigs=1, transcript_loc=scaffold2983_contigs=1:5880-6292 Augustus predicted protein sequence Tobacco scaffold2983_contigs=1~5880-6292 RPW8 PF05659.6 g26613.t1 - 0.081 12.4 0.7 0.091 12.3 0.5 1.1 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:29416-29739 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~29416-29739 DUF730 PF05325.6 g111472.t1 - 0.13 12 0.6 0.23 11.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF730) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:588663-589153 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~588663-589153 RES PF08808.6 g112293.t1 - 0.082 13 0 0.084 12.9 0 1.1 1 0 0 1 1 1 0 RES domain | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:34268-34468 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~34268-34468 HasA PF06438.7 g126751.t1 - 0.011 15.1 0.2 0.011 15.1 0.2 1.1 1 0 0 1 1 1 0 Heme-binding protein A (HasA) | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:84589-84891 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~84589-84891 DUF1726 PF08351.6 g54261.t1 - 0.16 11.6 0.3 0.33 10.6 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1726) | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:108907-109263 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~108907-109263 SCP-1 PF05483.7 g35568.t1 - 0.024 12.4 0.5 0.028 12.2 0.3 1 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:103337-104340 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~103337-104340 Rep_fac-A_3 PF08661.6 g43649.t1 - 0.045 13.6 0.4 4.6 7.1 0.1 2.6 1 1 1 2 2 2 0 Replication factor A protein 3 | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:279451-279756 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~279451-279756 DUF4580 PF15162.1 g85380.t1 - 0.067 12.5 0 0.1 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4580) | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:330096-332087 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~330096-332087 THOC7 PF05615.8 g54954.t1 - 0.032 14.4 1.1 0.052 13.8 0.4 1.6 1 1 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:225878-226297 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~225878-226297 UPF0561 PF10573.4 g106864.t1 - 0.017 14.9 4.6 0.024 14.4 3.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:13579-13788 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~13579-13788 PAT1 PF09770.4 g124741.t1 - 9.9 4.2 11 11 4.1 7.6 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:44751-45355 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~44751-45355 Hemopexin PF00045.14 g81680.t1 - 0.051 13.3 0.4 0.076 12.7 0.3 1.4 1 0 0 1 1 1 0 Hemopexin | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:307640-307888 Augustus predicted protein sequence Tobacco scaffold1732_contigs=8~307640-307888 NAM-associated PF14303.1 g99871.t1 - 0.0018 18.6 3.6 0.0021 18.3 2.5 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:280996-281295 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~280996-281295 zf-C2HC_2 PF13913.1 g92825.t1 - 0.023 14.3 0 7.6 6.3 0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:323827-324246 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~323827-324246 Csm1 PF12539.3 g98996.t1 - 0.015 15.7 0.1 0.03 14.8 0 1.5 1 1 0 1 1 1 0 Chromosome segregation protein Csm1/Pcs1 | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:169880-170233 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~169880-170233 HCR PF07111.7 g125637.t1 - 0.045 11.7 0.1 0.051 11.5 0.1 1.1 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:97855-98804 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~97855-98804 CDK5_activator PF03261.10 g130470.t1 - 0.15 11.3 1.2 0.17 11.1 0.8 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase 5 activator protein | Ref_seq=scaffold4647_contigs=1, transcript_loc=scaffold4647_contigs=1:1-447 Augustus predicted protein sequence Tobacco scaffold4647_contigs=1~1-447 Omega-toxin PF06357.6 g63066.t1 - 0.13 11.8 0.2 0.24 11 0.2 1.4 1 0 0 1 1 1 0 Omega-atracotoxin | Ref_seq=scaffold1364_contigs=3, transcript_loc=scaffold1364_contigs=3:1140-1457 Augustus predicted protein sequence Tobacco scaffold1364_contigs=3~1140-1457 ATX_III PF08098.6 g110376.t1 - 1.6 8.6 12.1 2.8 7.8 0.8 2.7 2 0 0 2 2 2 0 Anemonia sulcata toxin III family | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:10831-11360 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~10831-11360 DUF4179 PF13786.1 g81678.t1 - 0.011 15.9 1.1 0.015 15.4 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) | Ref_seq=scaffold1732_contigs=8, transcript_loc=scaffold1732_contigs=8:294625-294849 Augustus predicted protein sequence Tobacco scaffold1732_contigs=8~294625-294849 Axin_b-cat_bind PF08833.5 g62730.t1 - 1.9 8.2 6.4 0.32 10.7 0.4 2.3 2 0 0 2 2 2 0 Axin beta-catenin binding domain | Ref_seq=scaffold1355_contigs=6, transcript_loc=scaffold1355_contigs=6:14521-14913 Augustus predicted protein sequence Tobacco scaffold1355_contigs=6~14521-14913 DUF4075 PF13294.1 g20623.t1 - 0.069 13.1 0.2 0.16 12 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:562992-563845 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~562992-563845 Toxin_24 PF08094.6 g57226.t1 - 0.067 12.8 0.8 0.88 9.2 0 2.2 2 0 0 2 2 2 0 Conotoxin TVIIA/GS family | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:12974-13267 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~12974-13267 RE_HpaII PF09561.5 g32294.t1 - 0.04 13.1 0 0.06 12.5 0 1.3 1 1 0 1 1 1 0 HpaII restriction endonuclease | Ref_seq=scaffold815_contigs=5, transcript_loc=scaffold815_contigs=5:53234-53545 Augustus predicted protein sequence Tobacco scaffold815_contigs=5~53234-53545 PB1 PF00564.19 g102943.t1 - 0.061 12.9 5.5 2.9 7.6 0 2.9 4 0 0 4 4 4 0 PB1 domain | Ref_seq=scaffold2274_contigs=4, transcript_loc=scaffold2274_contigs=4:2283-3161 Augustus predicted protein sequence Tobacco scaffold2274_contigs=4~2283-3161 RNase_H2-Ydr279 PF09468.5 g77065.t1 - 0.1 11.7 2.4 0.12 11.5 1.6 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:155769-156442 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~155769-156442 DUF3683 PF12447.3 g92776.t1 - 0.091 12.6 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3683) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:169018-170257 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~169018-170257 Ribosomal_L15e PF00827.12 g125631.t1 - 0.0064 16 1 0.011 15.2 0.7 1.4 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:92426-93513 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~92426-93513 Hint_2 PF13403.1 g12373.t1 - 0.03 14.2 0.1 0.042 13.7 0 1.2 1 0 0 1 1 1 0 Hint domain | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:91913-92257 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~91913-92257 Phospholip_A2_3 PF09056.6 g35821.t1 - 0.16 12.2 2.2 0.81 9.9 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic phospholipase A2 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:521671-522627 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~521671-522627 OKR_DC_1_C PF03711.10 g103442.t1 - 0.013 15.5 0 0.016 15.2 0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, C-terminal domain | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:572177-572500 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~572177-572500 RinB PF06116.7 g36410.t1 - 1.4 8.6 3.6 3 7.5 1.8 2 2 0 0 2 2 2 0 Transcriptional activator RinB | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:19492-20435 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~19492-20435 NHase_alpha PF02979.11 g51513.t1 - 0.015 14.5 0 0.017 14.3 0 1.1 1 0 0 1 1 1 0 Nitrile hydratase, alpha chain | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:3655-3903 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~3655-3903 Peptidase_S49_N PF08496.5 g69615.t1 - 0.02 14.7 1.1 0.032 14 0.8 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:618837-620064 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~618837-620064 Mito_fiss_reg PF05308.6 g74422.t1 - 1.2 8.3 5.9 1.9 7.7 4.1 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:215158-217201 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~215158-217201 EIIC-GAT PF03611.9 g37658.t1 - 0.022 13.5 0.2 0.028 13.1 0.1 1 1 0 0 1 1 1 0 PTS system sugar-specific permease component | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:162306-163352 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~162306-163352 DUF4201 PF13870.1 g25821.t1 - 0.0094 15.3 4.7 0.013 14.8 3.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:151808-152227 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~151808-152227 Humanin PF15040.1 g71794.t1 - 0.059 12.6 0.6 0.14 11.4 0.4 1.7 1 0 0 1 1 1 0 Humanin family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:124557-125352 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~124557-125352 DUF4604 PF15377.1 g120029.t1 - 0.19 11.9 4.2 0.21 11.7 2.9 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4604) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:281195-281437 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~281195-281437 ATHILA PF03078.10 g22691.t1 - 0.058 11.9 0.2 0.82 8.1 0.2 2 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:127983-128867 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~127983-128867 ADK_lid PF05191.9 g94985.t1 - 0.042 13.5 0.1 0.1 12.3 0.1 1.6 1 0 0 1 1 1 0 Adenylate kinase, active site lid | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:49020-50551 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~49020-50551 POX PF07526.6 g95986.t1 - 0.13 12.4 1 0.16 12.2 0.7 1.1 1 0 0 1 1 1 0 Associated with HOX | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:80676-80951 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~80676-80951 JTB PF05439.7 g10090.t1 - 0.051 13.3 0.2 0.36 10.5 0.1 2.1 2 0 0 2 2 2 0 Jumping translocation breakpoint protein (JTB) | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:94406-95653 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~94406-95653 NESP55 PF06390.7 g42967.t1 - 1.5 8.1 10.1 2.7 7.2 1.3 2.6 1 1 0 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:50517-52469 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~50517-52469 ATHILA PF03078.10 g43415.t1 - 0.025 13.1 0 0.028 13 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:185275-186580 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~185275-186580 DUF1344 PF07076.6 g99676.t1 - 0.051 13.1 5 6.5 6.3 0.1 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF1344) | Ref_seq=scaffold2176_contigs=19, transcript_loc=scaffold2176_contigs=19:79244-79459 Augustus predicted protein sequence Tobacco scaffold2176_contigs=19~79244-79459 LysM PF01476.15 g78471.t1 - 0.0021 17.9 0 2.3 8.1 0 2.4 2 0 0 2 2 2 2 LysM domain | Ref_seq=scaffold1649_contigs=4, transcript_loc=scaffold1649_contigs=4:9200-9956 Augustus predicted protein sequence Tobacco scaffold1649_contigs=4~9200-9956 Mu-like_Pro PF10123.4 g23022.t1 - 0.0069 15.8 0.2 0.01 15.3 0.1 1.2 1 0 0 1 1 1 1 Mu-like prophage I protein | Ref_seq=scaffold633_contigs=1, transcript_loc=scaffold633_contigs=1:15749-16859 Augustus predicted protein sequence Tobacco scaffold633_contigs=1~15749-16859 NMD3 PF04981.8 g95948.t1 - 0.02 14 0 0.025 13.6 0 1.2 1 0 0 1 1 1 0 NMD3 family | Ref_seq=scaffold2080_contigs=18, transcript_loc=scaffold2080_contigs=18:73315-74264 Augustus predicted protein sequence Tobacco scaffold2080_contigs=18~73315-74264 F-box PF00646.28 g60934.t1 - 0.019 14.6 0.3 0.067 12.8 0 2 2 1 0 2 2 2 0 F-box domain | Ref_seq=scaffold1324_contigs=9, transcript_loc=scaffold1324_contigs=9:71567-71913 Augustus predicted protein sequence Tobacco scaffold1324_contigs=9~71567-71913 DUF3456 PF11938.3 g29764.t1 - 0.14 12.1 1 0.5 10.3 0 1.9 1 1 0 2 2 2 0 TLR4 regulator and MIR-interacting MSAP | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:58288-59338 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~58288-59338 SulA PF03846.9 g41625.t1 - 0.07 12.8 0.1 9.3 5.9 0 2.4 1 1 2 3 3 3 0 Cell division inhibitor SulA | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:48066-48362 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~48066-48362 DUF2933 PF11666.3 g107222.t1 - 0.075 12.5 1.6 0.13 11.8 1.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2933) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:954304-954615 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~954304-954615 DENN PF02141.16 g124413.t1 - 0.023 14.4 0 0.031 14 0 1.2 1 0 0 1 1 1 0 DENN (AEX-3) domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2164582-2165047 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2164582-2165047 Put_Phosphatase PF06888.7 g76687.t1 - 0.031 13.4 0.1 0.035 13.2 0 1.1 1 0 0 1 1 1 0 Putative Phosphatase | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:99005-99882 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~99005-99882 CCDC155 PF14662.1 g74824.t1 - 0.16 11.5 9.8 0.084 12.4 3 2.3 1 1 0 2 2 2 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:141398-141940 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~141398-141940 FlxA PF14282.1 g114658.t1 - 0.0011 18.8 2.6 0.0011 18.8 1.8 2.2 2 0 0 2 2 2 1 FlxA-like protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:162753-163475 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~162753-163475 zf-CCHC_5 PF14787.1 g100089.t1 - 0.14 11.6 5.4 0.27 10.7 3.8 1.4 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:20442-22173 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~20442-22173 Mg_chelatase PF01078.16 g42436.t1 - 0.12 11.5 0 0.19 10.8 0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:44262-45006 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~44262-45006 DUF1939 PF09154.5 g79711.t1 - 0.052 13.4 0.1 0.087 12.7 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:63253-64697 Augustus predicted protein sequence Tobacco scaffold1701_contigs=25~63253-64697 DUF4365 PF14280.1 g7015.t1 - 0.063 12.9 0.1 2.2 8 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4365) | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:30212-30721 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~30212-30721 Rbsn PF11464.3 g113872.t1 - 0.02 14.4 0.5 0.036 13.6 0.3 1.4 1 0 0 1 1 1 0 Rabenosyn Rab binding domain | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:617744-618028 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~617744-618028 Selenoprotein_S PF06936.6 g32832.t1 - 0.013 15 0.4 0.02 14.4 0.3 1.4 1 1 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold820_contigs=1, transcript_loc=scaffold820_contigs=1:18763-19953 Augustus predicted protein sequence Tobacco scaffold820_contigs=1~18763-19953 BRF1 PF07741.8 g69527.t1 - 6 7.1 8.6 20 5.4 6 1.8 1 1 0 1 1 1 0 Brf1-like TBP-binding domain | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:360958-361524 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~360958-361524 DUF1985 PF09331.6 g60714.t1 - 0.13 12.1 0 0.16 11.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:4546-5453 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~4546-5453 DUF4219 PF13961.1 g123229.t1 - 0.000057 22.4 0.2 0.00012 21.3 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:137845-138090 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~137845-138090 ATHILA PF03078.10 g2042.t1 - 0.0017 17 0 0.002 16.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:59442-59984 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~59442-59984 T2SG PF08334.6 g98162.t1 - 0.035 13.8 0 0.042 13.6 0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein G | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:37140-39193 Augustus predicted protein sequence Tobacco scaffold2154_contigs=6~37140-39193 Adeno_shaft PF00608.12 g78467.t1 - 0.03 13.9 0.6 10 5.9 0 2.5 2 0 0 2 2 2 0 Adenoviral fibre protein (repeat/shaft region) | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:113304-115956 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~113304-115956 MarR_2 PF12802.2 g96007.t1 - 0.000017 24.4 1.8 0.27 10.9 0 3 1 1 2 3 3 3 2 MarR family | Ref_seq=scaffold2085_contigs=11, transcript_loc=scaffold2085_contigs=11:26196-27115 Augustus predicted protein sequence Tobacco scaffold2085_contigs=11~26196-27115 gag-asp_proteas PF13975.1 g20113.t1 - 0.082 12.7 0 0.23 11.2 0 1.7 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:113805-114416 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~113805-114416 HSCB_C PF07743.8 g86002.t1 - 0.0073 16.7 2.4 0.012 16 0.3 1.9 1 1 1 2 2 2 1 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:383039-383368 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~383039-383368 PRP1_N PF06424.7 g13760.t1 - 0.075 13.3 0.6 0.086 13.1 0.4 1.1 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:51999-52457 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~51999-52457 YcbB PF08664.5 g41576.t1 - 0.036 13.8 1.5 0.052 13.3 0.9 1.4 1 1 0 1 1 1 0 YcbB domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:358313-359325 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~358313-359325 Inhibitor_Mig-6 PF11555.3 g28308.t1 - 2.8 8.3 5.3 1.4 9.3 0.5 2.1 1 1 1 2 2 2 0 EGFR receptor inhibitor Mig-6 | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:32276-32746 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~32276-32746 Bombinin PF05298.6 g55689.t1 - 0.2 11.1 1 0.66 9.4 0.3 1.7 1 1 1 2 2 2 0 Bombinin | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:243055-243399 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~243055-243399 Toxin_23 PF08093.6 g116238.t1 - 1.8 8.5 6 30 4.6 0.2 3.3 3 0 0 3 3 3 0 Magi 5 toxic peptide family | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:259364-259973 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~259364-259973 DDHD PF02862.12 g3861.t1 - 0.0041 16.9 0.6 0.0048 16.7 0.4 1.1 1 0 0 1 1 1 1 DDHD domain | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:13108-13548 Augustus predicted protein sequence Tobacco scaffold245_contigs=3~13108-13548 Sigma70_ner PF04546.8 g49910.t1 - 0.0042 16.7 0.4 0.0079 15.8 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:343960-346494 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~343960-346494 DUF434 PF04256.7 g66442.t1 - 0.019 14.3 0 0.033 13.5 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF434) | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:113586-116677 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~113586-116677 Herpes_glycop_D PF01537.12 g60274.t1 - 0.057 13.3 0.2 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 Herpesvirus glycoprotein D/GG/GX domain | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:76118-77527 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~76118-77527 PRCC PF10253.4 g86667.t1 - 0.062 13.9 0.1 0.077 13.6 0.1 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:149786-150001 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~149786-150001 Phage_cap_E PF03864.10 g124275.t1 - 0.0018 17.3 0.1 0.0023 16.9 0.1 1.1 1 0 0 1 1 1 1 Phage major capsid protein E | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1800519-1801016 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1800519-1801016 Trypan_PARP PF05887.6 g14728.t1 - 9.8 5.9 30.2 4.9 6.9 7.5 2.3 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:62799-63319 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~62799-63319 Mito_fiss_reg PF05308.6 g22232.t1 - 0.12 11.7 2 0.12 11.7 1.4 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:26318-26605 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~26318-26605 Pro-rich_19 PF15455.1 g112537.t1 - 0.5 9.3 9.8 0.59 9.1 6.8 1.1 1 0 0 1 1 1 0 Proline-rich 19 | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:131540-131863 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~131540-131863 SKI PF01202.17 g63295.t1 - 0.14 12 0 0.15 11.9 0 1.2 1 0 0 1 1 1 0 Shikimate kinase | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:147838-148457 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~147838-148457 Tmemb_55A PF09788.4 g109020.t1 - 0.002 17.3 2.4 1.6 7.7 0.1 2.9 1 1 2 3 3 3 2 Transmembrane protein 55A | Ref_seq=scaffold2470_contigs=4, transcript_loc=scaffold2470_contigs=4:11985-12711 Augustus predicted protein sequence Tobacco scaffold2470_contigs=4~11985-12711 DUF4592 PF15262.1 g81478.t1 - 0.37 11.3 2.1 1.2 9.7 1.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4592) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:68535-69159 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~68535-69159 Daxx PF03344.10 g1967.t1 - 0.013 14 14.7 0.015 13.8 10.2 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:91980-92889 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~91980-92889 YdjO PF14169.1 g43084.t1 - 0.0058 16 0.3 0.0091 15.4 0.2 1.4 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:400814-401212 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~400814-401212 DUF4603 PF15376.1 g27376.t1 - 0.32 8.1 2.2 0.32 8.1 1.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4603) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:110299-110625 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~110299-110625 PBP1_TM PF14812.1 g1305.t1 - 0.014 15.6 1.2 0.02 15.2 0.8 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold170_contigs=1, transcript_loc=scaffold170_contigs=1:1-2869 Augustus predicted protein sequence Tobacco scaffold170_contigs=1~1-2869 DUF3499 PF12005.3 g8170.t1 - 0.096 12.8 0 0.16 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:188783-189339 Augustus predicted protein sequence Tobacco scaffold330_contigs=6~188783-189339 MmoB_DmpM PF02406.12 g112394.t1 - 0.11 12.5 0.2 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 MmoB/DmpM family | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:62685-63205 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~62685-63205 Colicin_Pyocin PF01320.13 g3094.t1 - 0.13 12.1 0.2 0.2 11.5 0.2 1.5 1 1 0 1 1 1 0 Colicin immunity protein / pyocin immunity protein | Ref_seq=scaffold224_contigs=2, transcript_loc=scaffold224_contigs=2:64942-65163 Augustus predicted protein sequence Tobacco scaffold224_contigs=2~64942-65163 TOBE PF03459.12 g87613.t1 - 0.095 12.8 0.1 0.44 10.6 0 2.2 2 0 0 2 2 2 0 TOBE domain | Ref_seq=scaffold1887_contigs=1, transcript_loc=scaffold1887_contigs=1:14285-14752 Augustus predicted protein sequence Tobacco scaffold1887_contigs=1~14285-14752 MerB PF03243.10 g14766.t1 - 0.11 12.2 0 0.12 12.1 0 1 1 0 0 1 1 1 0 Alkylmercury lyase | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:143142-144038 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~143142-144038 Topo_Zn_Ribbon PF08272.6 g55181.t1 - 0.048 13 0.6 5.5 6.4 0 2.5 2 0 0 2 2 2 0 Topoisomerase I zinc-ribbon-like | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:76246-77565 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~76246-77565 zf-CCHC_4 PF14392.1 g76581.t1 - 0.04 13.5 1.4 0.076 12.7 1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:169416-172626 Augustus predicted protein sequence Tobacco scaffold1616_contigs=7~169416-172626 PLAC8 PF04749.12 g11078.t1 - 0.26 11.8 3.5 3.6 8.1 2.4 2.1 1 1 0 1 1 1 0 PLAC8 family | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:95241-97340 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~95241-97340 DUF4207 PF13904.1 g53817.t1 - 0.0018 17.7 7.7 0.0021 17.4 5.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4207) | Ref_seq=scaffold1192_contigs=4, transcript_loc=scaffold1192_contigs=4:81579-82052 Augustus predicted protein sequence Tobacco scaffold1192_contigs=4~81579-82052 HOOK PF05622.7 g15972.t1 - 0.11 10.2 7.2 0.13 10 5 1.1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:211802-212098 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~211802-212098 Herpes_UL73 PF03554.8 g7853.t1 - 0.13 12.1 0.7 0.21 11.4 0.4 1.5 1 1 0 1 1 1 0 UL73 viral envelope glycoprotein | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:83610-84125 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~83610-84125 Fer2_3 PF13085.1 g714.t1 - 0.000059 22.8 0.2 0.44 10.3 0 2.5 2 0 0 2 2 2 2 2Fe-2S iron-sulfur cluster binding domain | Ref_seq=scaffold40_contigs=3, transcript_loc=scaffold40_contigs=3:234534-235568 Augustus predicted protein sequence Tobacco scaffold40_contigs=3~234534-235568 ATHILA PF03078.10 g96670.t1 - 0.04 12.5 0 0.089 11.3 0 1.5 1 1 1 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:112468-112776 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~112468-112776 DUF3047 PF11249.3 g114800.t1 - 0.045 13.1 0.2 0.061 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3047) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:137116-138160 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~137116-138160 DUF3662 PF12401.3 g55186.t1 - 0.0049 17 0 0.0066 16.6 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2662) | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:85345-85575 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~85345-85575 LRV_FeS PF05484.6 g22269.t1 - 0.35 10.4 7.1 0.067 12.7 1.2 2.2 2 0 0 2 2 2 0 LRV protein FeS4 cluster | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:726-2269 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~726-2269 DUF2524 PF10732.4 g107569.t1 - 0.073 13.1 0 0.12 12.5 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2524) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:1392-1691 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~1392-1691 DUF3950 PF13132.1 g101846.t1 - 6.5 6.3 10.5 12 5.5 1.3 3.2 3 2 0 3 3 3 0 Domain of unknown function (DUF3950) | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:737-1992 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~737-1992 CYSTM PF12734.2 g87290.t1 - 8.6 6.5 9.8 5.3 7.2 2.1 2.2 2 0 0 2 2 2 0 Cysteine-rich TM module stress tolerance | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:233187-233429 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~233187-233429 Hema_stalk PF08720.5 g127367.t1 - 0.032 13.7 0.1 0.034 13.6 0.1 1.1 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:16680-16970 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~16680-16970 Clathrin-link PF09268.5 g31073.t1 - 0.22 10.6 1 0.5 9.4 0.7 1.7 1 0 0 1 1 1 0 Clathrin, heavy-chain linker | Ref_seq=scaffold785_contigs=8, transcript_loc=scaffold785_contigs=8:37390-37698 Augustus predicted protein sequence Tobacco scaffold785_contigs=8~37390-37698 Tiny_TM_bacill PF09680.5 g23130.t1 - 0.19 11.1 9.4 2.6 7.5 0.8 3 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:215562-217488 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~215562-217488 Suf PF05843.9 g49909.t1 - 2 8 8.9 2.1 7.9 6.1 1.1 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:342404-342859 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~342404-342859 FH2 PF02181.18 g50187.t1 - 0.074 11.9 0 0.1 11.4 0 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:92969-93769 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~92969-93769 FAM177 PF14774.1 g33208.t1 - 0.031 14.1 0.4 0.031 14.1 0.3 1.7 2 0 0 2 2 2 0 FAM177 family | Ref_seq=scaffold827_contigs=4, transcript_loc=scaffold827_contigs=4:13730-14146 Augustus predicted protein sequence Tobacco scaffold827_contigs=4~13730-14146 GPW_gp25 PF04965.9 g5998.t1 - 0.11 12 0 0.18 11.3 0 1.3 1 0 0 1 1 1 0 Gene 25-like lysozyme | Ref_seq=scaffold288_contigs=2, transcript_loc=scaffold288_contigs=2:74909-75257 Augustus predicted protein sequence Tobacco scaffold288_contigs=2~74909-75257 DUF243 PF03103.12 g26357.t1 - 2.1 8.4 6.8 8.1 6.6 2.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF243) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:167520-167780 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~167520-167780 HisKA PF00512.20 g10625.t1 - 0.15 12 0 26 4.9 0 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:13276-14208 Augustus predicted protein sequence Tobacco scaffold389_contigs=8~13276-14208 OSR1_C PF12202.3 g75755.t1 - 1.3 8.7 3.4 47 3.7 0.1 3.2 3 0 0 3 3 3 0 Oxidative-stress-responsive kinase 1 C terminal | Ref_seq=scaffold1592_contigs=13, transcript_loc=scaffold1592_contigs=13:31995-32606 Augustus predicted protein sequence Tobacco scaffold1592_contigs=13~31995-32606 TT_ORF2 PF02957.10 g60186.t1 - 0.0095 16.6 0.5 0.013 16.2 0.3 1.3 1 0 0 1 1 1 1 TT viral ORF2 | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:169433-169810 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~169433-169810 TraU PF06834.6 g96428.t1 - 0.0087 15.2 0.2 0.011 14.8 0.2 1 1 0 0 1 1 1 1 TraU protein | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:176745-177709 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~176745-177709 Flagellar_rod PF05149.7 g113620.t1 - 0.008 15.4 0.1 0.01 15 0.1 1.1 1 0 0 1 1 1 1 Paraflagellar rod protein | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:240752-241096 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~240752-241096 DUF4011 PF13195.1 g95657.t1 - 0.044 13.8 0.8 0.044 13.8 0.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4011) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:35071-35990 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~35071-35990 DUF4654 PF15547.1 g64656.t1 - 0.032 14.5 0 0.041 14.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4654) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:225875-226108 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~225875-226108 Glypican PF01153.14 g34814.t1 - 0.08 11.5 2.3 0.088 11.4 1.6 1.1 1 0 0 1 1 1 0 Glypican | Ref_seq=scaffold861_contigs=4, transcript_loc=scaffold861_contigs=4:41950-42787 Augustus predicted protein sequence Tobacco scaffold861_contigs=4~41950-42787 DegS PF05384.6 g8361.t1 - 0.0039 16.4 5.1 0.013 14.7 3.5 1.8 1 1 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:315524-316212 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~315524-316212 zf-RVT PF13966.1 g120631.t1 - 0.00002 24.8 1.7 0.000034 24 1.1 1.5 1 1 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:349539-351373 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~349539-351373 Retrotrans_gag PF03732.12 g109865.t1 - 0.00044 20.2 0 0.00076 19.4 0 1.4 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:361458-362589 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~361458-362589 DUF2365 PF10157.4 g19155.t1 - 0.02 14.7 0.1 0.024 14.5 0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:455610-455924 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~455610-455924 TGF_beta_GS PF08515.7 g109943.t1 - 3.6 6.9 5.7 0.83 9 1 1.9 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:1-191 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~1-191 DUF4219 PF13961.1 g9873.t1 - 0.023 14.1 0.1 0.032 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:236788-237030 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~236788-237030 DUF4248 PF14053.1 g63599.t1 - 0.011 15.2 0 0.018 14.6 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:57409-57771 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~57409-57771 RecQ5 PF06959.6 g34942.t1 - 0.0084 15.7 0.1 0.0098 15.5 0.1 1.2 1 0 0 1 1 1 1 RecQ helicase protein-like 5 (RecQ5) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:150639-151336 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~150639-151336 MHCassoc_trimer PF08831.5 g90194.t1 - 0.1 12.4 0.9 0.39 10.5 0.5 2 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:275258-275950 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~275258-275950 Peptidase_C7 PF01830.13 g76006.t1 - 0.0063 15.6 0.1 0.0073 15.4 0 1.1 1 0 0 1 1 1 1 Peptidase C7 family | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:297089-297346 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~297089-297346 PEGSRP PF07623.6 g20482.t1 - 0.034 13.4 0.1 0.058 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:340417-340824 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~340417-340824 Xpo1 PF08389.7 g104355.t1 - 0.04 13.8 0.1 0.047 13.6 0.1 1.1 1 0 0 1 1 1 0 Exportin 1-like protein | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:624496-624831 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~624496-624831 Allatostatin PF05953.7 g86005.t1 - 0.14 12.7 0.7 19 6 0 2.6 2 0 0 2 2 2 0 Allatostatin | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:386276-386548 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~386276-386548 RVT_3 PF13456.1 g63720.t1 - 0.000011 25.1 0.1 0.000015 24.6 0.1 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:172418-172624 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~172418-172624 zf-CCHC PF00098.18 g42852.t1 - 0.00018 21.2 0.6 0.00036 20.3 0.4 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:687710-689155 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~687710-689155 AP_endonuc_2_N PF07582.7 g98826.t1 - 0.088 12.3 0 0.13 11.8 0 1.2 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:256400-257132 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~256400-257132 Y_phosphatase PF00102.22 g40922.t1 - 0.12 11.6 0.3 0.14 11.5 0.2 1.1 1 0 0 1 1 1 0 Protein-tyrosine phosphatase | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:187101-188737 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~187101-188737 DUF4219 PF13961.1 g53624.t1 - 0.000011 24.7 0.4 0.000018 24 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:212551-213139 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~212551-213139 HSNSD PF12062.3 g107561.t1 - 0.082 11.2 0 0.11 10.8 0 1.1 1 0 0 1 1 1 0 heparan sulfate-N-deacetylase | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:335352-337653 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~335352-337653 CST-I PF06002.7 g47423.t1 - 0.12 11.6 0 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Alpha-2,3-sialyltransferase (CST-I) | Ref_seq=scaffold1098_contigs=4, transcript_loc=scaffold1098_contigs=4:45142-45552 Augustus predicted protein sequence Tobacco scaffold1098_contigs=4~45142-45552 PI3K_p85B PF02192.11 g35090.t1 - 0.13 11.6 0.1 1.6 8.2 0 2 2 0 0 2 2 2 0 PI3-kinase family, p85-binding domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:23835-24149 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~23835-24149 DUF4660 PF15559.1 g14588.t1 - 0.057 13.5 0.1 0.07 13.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4660) | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:54547-54810 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~54547-54810 FTP PF07504.8 g35481.t1 - 0.13 11.7 0.1 0.2 11.1 0.1 1.2 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:206501-206734 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~206501-206734 DUF2127 PF09900.4 g31887.t1 - 0.14 12.1 0.1 0.16 11.9 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:141349-141579 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~141349-141579 S6PP_C PF08472.5 g77193.t1 - 0.082 12.5 0 0.099 12.2 0 1.1 1 0 0 1 1 1 0 Sucrose-6-phosphate phosphohydrolase C-terminal | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:91565-92529 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~91565-92529 PepSY_TM_3 PF13706.1 g101556.t1 - 0.0058 16 1 0.0058 16 0.7 1.8 2 0 0 2 2 2 1 PepSY-associated TM helix | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:316090-316377 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~316090-316377 Nucleoplasmin PF03066.10 g3399.t1 - 0.24 10.8 5 0.24 10.9 3.5 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold233_contigs=2, transcript_loc=scaffold233_contigs=2:19297-19739 Augustus predicted protein sequence Tobacco scaffold233_contigs=2~19297-19739 HALZ PF02183.13 g58728.t1 - 0.065 12.9 0.8 0.18 11.5 0.3 2 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:579426-579955 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~579426-579955 AAA_13 PF13166.1 g103676.t1 - 0.006 15.1 5 0.0077 14.7 3.5 1.1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:26774-27689 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~26774-27689 Gly-rich_Ago1 PF12764.2 g38533.t1 - 0.57 10.8 2.3 0.67 10.6 1.6 1.3 1 1 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:158634-158870 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~158634-158870 MULE PF10551.4 g59908.t1 - 0.00072 19.6 0 0.0016 18.5 0 1.6 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:129735-132481 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~129735-132481 ATHILA PF03078.10 g20662.t1 - 0.047 12.2 0 0.06 11.9 0 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:6010-6378 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~6010-6378 CR6_interact PF10147.4 g122323.t1 - 0.043 13.1 0 0.068 12.4 0 1.3 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:125883-126476 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~125883-126476 Bet_v_1 PF00407.14 g37212.t1 - 0.067 12.7 0.1 0.076 12.6 0.1 1.1 1 0 0 1 1 1 0 Pathogenesis-related protein Bet v I family | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:69062-69304 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~69062-69304 HeLo PF14479.1 g74484.t1 - 0.055 13.1 4.4 0.085 12.5 3 1.3 1 0 0 1 1 1 0 Prion-inhibition and propagation | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:387174-388108 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~387174-388108 GRA6 PF05084.8 g100988.t1 - 0.26 10.7 2.2 0.41 10.1 1.5 1.3 1 0 0 1 1 1 0 Granule antigen protein (GRA6) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:526438-527218 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~526438-527218 RL11D PF11088.3 g44235.t1 - 0.14 12 2.9 8.2 6.3 0.1 2.1 2 0 0 2 2 2 0 Glycoprotein encoding membrane proteins RL5A and RL6 | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:69257-69750 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~69257-69750 NADH_4Fe-4S PF10589.4 g107138.t1 - 0.29 10.3 3.8 0.53 9.4 2.6 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:740881-741190 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~740881-741190 zf-CCHC PF00098.18 g66910.t1 - 0.00037 20.2 1.6 0.00037 20.2 1.1 2.9 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:104294-104605 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~104294-104605 WRC PF08879.5 g114370.t1 - 0.028 14 0.4 0.057 13 0.3 1.5 1 0 0 1 1 1 0 WRC | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:29430-30989 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~29430-30989 End_N_terminal PF12218.3 g120959.t1 - 0.047 13.1 0 0.074 12.5 0 1.4 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:95345-95692 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~95345-95692 ATHILA PF03078.10 g113597.t1 - 0.0000015 27 0 0.0000016 27 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:199834-200139 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~199834-200139 Exonuc_VII_L PF02601.10 g112347.t1 - 0.0092 15.2 1.1 0.011 14.9 0.8 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:145294-148694 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~145294-148694 Type_III_YscG PF09477.5 g82506.t1 - 0.065 13.3 0.5 0.072 13.1 0.3 1.1 1 0 0 1 1 1 0 Bacterial type II secretion system chaperone protein (type_III_yscG) | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:130238-130516 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~130238-130516 DUF843 PF05814.6 g115224.t1 - 6.8 6.5 7.5 23 4.8 0.2 2.2 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:283195-283794 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~283195-283794 Myosin_tail_1 PF01576.14 g77905.t1 - 0.00031 18.6 1.4 0.00035 18.4 0.9 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:26310-26648 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~26310-26648 DUF1754 PF08555.5 g31395.t1 - 0.0029 18.1 2.4 0.0043 17.6 1.7 1.3 1 0 0 1 1 1 1 Eukaryotic family of unknown function (DUF1754) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:11430-12004 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~11430-12004 Hex_IIIa PF02455.11 g35991.t1 - 0.096 11.3 0.4 0.11 11.1 0.3 1 1 0 0 1 1 1 0 Hexon-associated protein (IIIa) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:43724-44340 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~43724-44340 SLR1-BP PF07333.7 g129191.t1 - 0.01 16 0.7 0.013 15.6 0.5 1.3 1 0 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2923_contigs=1, transcript_loc=scaffold2923_contigs=1:20018-20233 Augustus predicted protein sequence Tobacco scaffold2923_contigs=1~20018-20233 ParB PF08775.5 g34328.t1 - 0.069 13.4 0.1 0.071 13.4 0.1 1.1 1 0 0 1 1 1 0 ParB family | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:12636-12863 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~12636-12863 Herpes_LMP2 PF07415.6 g125615.t1 - 1.1 7.7 4.8 1 7.8 3.3 1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:69725-70044 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~69725-70044 FAM74 PF15026.1 g106440.t1 - 0.11 12.1 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 FAM74 protein | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:202678-203034 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~202678-203034 DUF1590 PF07629.6 g126752.t1 - 0.1 12.2 0.1 0.24 11 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1590) | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:86185-86695 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~86185-86695 DBD_Tnp_Mut PF03108.10 g71013.t1 - 0.00000017 30.6 0 0.00000027 30 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:311004-311489 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~311004-311489 Retrotrans_gag PF03732.12 g106896.t1 - 0.13 12.3 0.1 0.16 12 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:146305-146556 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~146305-146556 DUF1284 PF06935.6 g102816.t1 - 0.031 14.4 0 0.035 14.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1284) | Ref_seq=scaffold2270_contigs=3, transcript_loc=scaffold2270_contigs=3:2197-2475 Augustus predicted protein sequence Tobacco scaffold2270_contigs=3~2197-2475 CCDC84 PF14968.1 g92178.t1 - 0.31 10.5 3.5 0.49 9.8 2.4 1.2 1 0 0 1 1 1 0 Coiled coil protein 84 | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:168238-169716 Augustus predicted protein sequence Tobacco scaffold1984_contigs=7~168238-169716 Borrelia_P83 PF05262.6 g38694.t1 - 1.1 7.4 10 1.2 7.3 7 1 1 0 0 1 1 1 0 Borrelia P83/100 protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:401995-402372 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~401995-402372 RepB PF07506.6 g18188.t1 - 0.15 11.8 0.5 0.18 11.6 0.3 1 1 0 0 1 1 1 0 RepB plasmid partitioning protein | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:57671-58103 Augustus predicted protein sequence Tobacco scaffold547_contigs=4~57671-58103 DUF4219 PF13961.1 g115174.t1 - 0.00075 18.8 0.1 0.0017 17.7 0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:140528-142005 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~140528-142005 ATHILA PF03078.10 g49926.t1 - 0.00097 17.8 0 0.03 12.9 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:384563-385021 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~384563-385021 Glyco_hydro_59 PF02057.10 g22898.t1 - 0.13 10.3 0.1 0.15 10 0.1 1 1 0 0 1 1 1 0 Glycosyl hydrolase family 59 | Ref_seq=scaffold627_contigs=2, transcript_loc=scaffold627_contigs=2:199033-199296 Augustus predicted protein sequence Tobacco scaffold627_contigs=2~199033-199296 DUF1612 PF07756.7 g124602.t1 - 0.013 15.5 4.6 0.92 9.6 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1612) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:112531-112993 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~112531-112993 PP1_inhibitor PF05361.7 g36497.t1 - 0.0053 16.4 0.3 0.0059 16.3 0.2 1.1 1 0 0 1 1 1 1 PKC-activated protein phosphatase-1 inhibitor | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:110666-111128 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~110666-111128 AF1Q PF15017.1 g22628.t1 - 0.026 14.4 3.9 0.028 14.3 0.7 2.1 2 0 0 2 2 2 0 Drug resistance and apoptosis regulator | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:12001-12794 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~12001-12794 MadM PF03818.8 g100805.t1 - 0.017 14.6 1.3 0.021 14.3 0.1 1.7 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:47767-48584 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~47767-48584 DNA_pol_E_B PF04042.11 g2231.t1 - 0.076 12.2 0.1 0.089 12 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:48098-49696 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~48098-49696 BATS PF06968.8 g130026.t1 - 0.14 11.9 0.5 4 7.3 0 2.2 2 0 0 2 2 2 0 Biotin and Thiamin Synthesis associated domain | Ref_seq=scaffold3334_contigs=1, transcript_loc=scaffold3334_contigs=1:1-639 Augustus predicted protein sequence Tobacco scaffold3334_contigs=1~1-639 DIT1_PvcA PF05141.7 g48864.t1 - 0.046 13 0.6 0.047 13 0.4 1.1 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:513904-514266 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~513904-514266 DUF4219 PF13961.1 g34523.t1 - 0.00033 20 0.8 0.0005 19.4 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:23470-23817 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~23470-23817 DUF3346 PF11826.3 g68139.t1 - 0.045 13.5 0 0.097 12.4 0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3346) | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:143222-143875 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~143222-143875 CobT PF06213.7 g100690.t1 - 0.0074 15.4 13 0.0082 15.3 9 1.2 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:248868-250995 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~248868-250995 DUF778 PF05608.7 g3422.t1 - 0.093 12.6 0 0.13 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF778) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:31794-32366 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~31794-32366 Mito_fiss_reg PF05308.6 g53536.t1 - 1.9 7.7 10.8 2.2 7.6 7.5 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:14234-15370 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~14234-15370 Trigger_N PF05697.8 g78485.t1 - 0.089 12.5 0 0.096 12.4 0 1.1 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) | Ref_seq=scaffold1650_contigs=8, transcript_loc=scaffold1650_contigs=8:23593-23823 Augustus predicted protein sequence Tobacco scaffold1650_contigs=8~23593-23823 Herpes_pp38 PF04846.8 g32.t1 - 0.05 12.9 0.7 0.081 12.2 0.5 1.4 1 0 0 1 1 1 0 Herpesvirus pp38 phosphoprotein | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:79950-80234 Augustus predicted protein sequence Tobacco scaffold1_contigs=5~79950-80234 DUF223 PF02721.9 g114101.t1 - 0.024 14.6 0 0.033 14.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF223 | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:251318-251803 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~251318-251803 DBD_Tnp_Mut PF03108.10 g68495.t1 - 0.0014 18.1 2.4 0.0024 17.4 1.7 1.6 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:248301-248573 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~248301-248573 DpnII PF04556.7 g112996.t1 - 0.005 15.9 0 0.0057 15.7 0 1 1 0 0 1 1 1 1 DpnII restriction endonuclease | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:124464-125262 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~124464-125262 Herpes_UL14 PF03580.9 g29372.t1 - 0.15 11.8 2.1 0.18 11.5 1.3 1.3 1 1 0 1 1 1 0 Herpesvirus UL14-like protein | Ref_seq=scaffold758_contigs=7, transcript_loc=scaffold758_contigs=7:79873-80855 Augustus predicted protein sequence Tobacco scaffold758_contigs=7~79873-80855 EFG_II PF14492.1 g4786.t1 - 0.011 15.5 0.3 0.023 14.5 0.2 1.5 1 0 0 1 1 1 0 Elongation Factor G, domain II | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:34008-35613 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~34008-35613 T6SS-SciN PF12790.2 g21645.t1 - 0.088 12.4 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Type VI secretion lipoprotein | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:239427-239819 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~239427-239819 KorB_C PF06613.6 g91378.t1 - 0.073 12.5 0.4 0.11 11.8 0.3 1.4 1 1 0 1 1 1 0 KorB C-terminal beta-barrel domain | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:49466-49777 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~49466-49777 DUF3563 PF12086.3 g42518.t1 - 0.0000072 25.6 1 0.13 11.9 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3563) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:46661-47584 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~46661-47584 DUF3094 PF11293.3 g65933.t1 - 0.94 8.9 2.8 4.2 6.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:106915-107612 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~106915-107612 Matrilin_ccoil PF10393.4 g130138.t1 - 0.02 14.2 0 0.031 13.6 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3527_contigs=1, transcript_loc=scaffold3527_contigs=1:709-1077 Augustus predicted protein sequence Tobacco scaffold3527_contigs=1~709-1077 Roughex PF06020.6 g65085.t1 - 0.066 11.8 0.3 0.072 11.7 0.2 1.1 1 0 0 1 1 1 0 Drosophila roughex protein | Ref_seq=scaffold1396_contigs=6, transcript_loc=scaffold1396_contigs=6:54833-55273 Augustus predicted protein sequence Tobacco scaffold1396_contigs=6~54833-55273 Speriolin_N PF15058.1 g21448.t1 - 0.076 12.9 0.1 0.082 12.8 0.1 1 1 0 0 1 1 1 0 Speriolin N terminus | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:485336-488192 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~485336-488192 UBN2 PF14223.1 g34235.t1 - 0.016 15 0 0.018 14.7 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:70758-71192 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~70758-71192 HpaB PF03241.8 g36019.t1 - 0.15 10.8 0 0.15 10.8 0 1.2 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:107149-107430 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~107149-107430 DUF2452 PF10504.4 g11455.t1 - 0.085 12.1 0.1 0.12 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:986-1545 Augustus predicted protein sequence Tobacco scaffold408_contigs=6~986-1545 Cnl2_NKP2 PF09447.5 g128226.t1 - 0.12 12.1 0.6 0.22 11.2 0 1.7 2 0 0 2 2 2 0 Cnl2/NKP2 family protein | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:18127-18732 Augustus predicted protein sequence Tobacco scaffold2856_contigs=1~18127-18732 Asp-B-Hydro_N PF05279.6 g65100.t1 - 0.36 10.6 2.7 0.45 10.3 1.9 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:58144-58563 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~58144-58563 Pox_F12L PF03337.8 g63462.t1 - 0.0011 16.9 0.5 0.0013 16.7 0.3 1 1 0 0 1 1 1 1 Poxvirus F12L protein | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:406387-408675 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~406387-408675 PmrD PF11183.3 g45772.t1 - 0.087 12.6 0.1 0.26 11.1 0 1.7 2 0 0 2 2 2 0 Polymyxin resistance protein PmrD | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:35713-37239 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~35713-37239 DUF4050 PF13259.1 g28717.t1 - 0.052 13.4 0.2 0.062 13.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4050) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:112084-112332 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~112084-112332 RRM_6 PF14259.1 g120691.t1 - 0.019 14.9 0 9.3 6.3 0 2.3 2 0 0 2 2 2 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:77090-77827 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~77090-77827 Salp15 PF12115.3 g66721.t1 - 0.056 13.6 0.1 0.069 13.3 0.1 1.2 1 0 0 1 1 1 0 Salivary protein of 15kDa inhibits CD4+ T cell activation | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:514324-515104 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~514324-515104 Hpt PF01627.18 g80591.t1 - 0.11 12.5 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 Hpt domain | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:98103-98642 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~98103-98642 tRNA-Thr_ED PF08915.6 g21823.t1 - 0.13 12.1 0 0.16 11.9 0 1.1 1 0 0 1 1 1 0 Archaea-specific editing domain of threonyl-tRNA synthetase | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:274709-277704 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~274709-277704 Mito_fiss_reg PF05308.6 g53781.t1 - 0.48 9.7 5.5 0.47 9.7 3.8 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:116798-117074 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~116798-117074 UBN2 PF14223.1 g38764.t1 - 0.0012 18.6 0 0.0017 18.1 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:122276-124372 Augustus predicted protein sequence Tobacco scaffold943_contigs=4~122276-124372 DUF3649 PF12365.3 g129161.t1 - 0.54 9.8 3.1 0.82 9.2 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3649) | Ref_seq=scaffold2920_contigs=1, transcript_loc=scaffold2920_contigs=1:12322-12618 Augustus predicted protein sequence Tobacco scaffold2920_contigs=1~12322-12618 Lactococcin_972 PF09683.5 g56553.t1 - 0.031 14.6 0.7 0.043 14.1 0.5 1.2 1 0 0 1 1 1 0 Bacteriocin (Lactococcin_972) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:371579-372002 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~371579-372002 Flag1_repress PF03614.8 g20121.t1 - 0.011 15.2 0.1 0.014 14.9 0.1 1 1 0 0 1 1 1 0 Repressor of phase-1 flagellin | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:137688-138005 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~137688-138005 RVT_3 PF13456.1 g17579.t1 - 0.00034 20.3 0 0.00041 20 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:211173-211457 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~211173-211457 Anillin PF08174.6 g20995.t1 - 0.098 12.7 0.2 0.098 12.7 0.1 1.1 1 0 0 1 1 1 0 Cell division protein anillin | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:217166-218428 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~217166-218428 PLAC9 PF15205.1 g4550.t1 - 0.13 12.5 0.4 0.3 11.4 0 1.7 1 1 1 2 2 2 0 Placenta-specific protein 9 | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:100063-101688 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~100063-101688 Gas_vesicle_C PF01304.12 g18282.t1 - 0.13 11.8 0.7 0.13 11.8 0.5 2 3 0 0 3 3 3 0 Gas vesicles protein GVPc repeated domain | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:34800-35015 Augustus predicted protein sequence Tobacco scaffold549_contigs=4~34800-35015 H-kinase_dim PF02895.9 g114993.t1 - 0.0064 16.7 0.5 0.0095 16.2 0.4 1.2 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:178193-178611 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~178193-178611 DUF3872 PF12988.2 g4746.t1 - 0.039 13.4 0 0.044 13.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3872) | Ref_seq=scaffold263_contigs=4, transcript_loc=scaffold263_contigs=4:21199-21566 Augustus predicted protein sequence Tobacco scaffold263_contigs=4~21199-21566 Peptidase_A3 PF02160.10 g42252.t1 - 0.000017 24.5 0 0.000019 24.3 0 1.1 1 0 0 1 1 1 1 Cauliflower mosaic virus peptidase (A3) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:271938-272477 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~271938-272477 FH2 PF02181.18 g127998.t1 - 0.00063 18.7 4 0.00079 18.4 2.8 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:30050-30518 Augustus predicted protein sequence Tobacco scaffold2845_contigs=1~30050-30518 DBD_Tnp_Mut PF03108.10 g125342.t1 - 0.045 13.3 0 0.064 12.8 0 1.3 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:64309-64940 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~64309-64940 DUF1013 PF06242.6 g95752.t1 - 0.14 12.1 0 0.21 11.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:264755-265078 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~264755-265078 Staph_haemo PF05480.6 g128602.t1 - 0.07 12.8 0.5 0.11 12.1 0.4 1.3 1 0 0 1 1 1 0 Staphylococcus haemolytic protein | Ref_seq=scaffold2877_contigs=1, transcript_loc=scaffold2877_contigs=1:32909-33190 Augustus predicted protein sequence Tobacco scaffold2877_contigs=1~32909-33190 FYDLN_acid PF09538.5 g124556.t1 - 0.036 14.6 13.3 0.042 14.4 9.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:8946-9260 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~8946-9260 Reo_P9 PF06043.6 g34909.t1 - 0.072 12.1 0.1 0.081 11.9 0.1 1.1 1 0 0 1 1 1 0 Reovirus P9-like family | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:59846-60094 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~59846-60094 HTH_psq PF05225.11 g45665.t1 - 0.071 12.6 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:322402-322886 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~322402-322886 Spore_III_AF PF09581.5 g127879.t1 - 0.07 12.9 0.1 0.08 12.7 0 1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:30082-30522 Augustus predicted protein sequence Tobacco scaffold2840_contigs=1~30082-30522 2OG-Fe_Oxy_2 PF10014.4 g89003.t1 - 0.016 14.5 0.2 0.03 13.7 0.2 1.4 1 0 0 1 1 1 0 2OG-Fe dioxygenase | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:422742-423726 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~422742-423726 2Fe-2S_Ferredox PF11591.3 g37253.t1 - 0.0072 15.9 2.1 1.5 8.5 0.4 2.4 1 1 1 2 2 2 2 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold916_contigs=9, transcript_loc=scaffold916_contigs=9:36889-37982 Augustus predicted protein sequence Tobacco scaffold916_contigs=9~36889-37982 Flu_M1 PF00598.14 g80874.t1 - 0.1 12 0.4 0.57 9.5 0.1 2.2 2 1 0 2 2 2 0 Influenza Matrix protein (M1) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:217455-218564 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~217455-218564 YoaP PF14268.1 g57629.t1 - 0.044 13 3.2 0.21 10.8 0.1 2.4 1 1 1 2 2 2 0 YoaP-like | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:68703-68975 Augustus predicted protein sequence Tobacco scaffold1253_contigs=5~68703-68975 Asp-B-Hydro_N PF05279.6 g7618.t1 - 0.065 13 0.5 0.086 12.6 0.3 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:473339-474738 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~473339-474738 gag_pre-integrs PF13976.1 g58722.t1 - 0.0057 16.2 0 0.0089 15.6 0 1.3 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:572242-573247 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~572242-573247 Retrotrans_gag PF03732.12 g129520.t1 - 0.034 14.2 0 0.038 14 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:6862-7083 Augustus predicted protein sequence Tobacco scaffold2972_contigs=1~6862-7083 CHCH PF06747.8 g45460.t1 - 0.06 13.2 0.1 9 6.3 0 2.2 2 0 0 2 2 2 0 CHCH domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:471569-471799 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~471569-471799 SLY PF12485.3 g45449.t1 - 0.031 14.4 2.6 0.035 14.3 1.8 1.1 1 0 0 1 1 1 0 Lymphocyte signaling adaptor protein | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:458625-458834 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~458625-458834 potato_inhibit PF00280.13 g109045.t1 - 0.42 10.7 2.8 35 4.6 0 2.8 1 1 3 4 4 4 0 Potato inhibitor I family | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:44333-46189 Augustus predicted protein sequence Tobacco scaffold2473_contigs=16~44333-46189 UBN2_2 PF14227.1 g48238.t1 - 0.025 14.1 0.1 0.04 13.4 0 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1106_contigs=3, transcript_loc=scaffold1106_contigs=3:15728-16823 Augustus predicted protein sequence Tobacco scaffold1106_contigs=3~15728-16823 Clusterin PF01093.12 g41787.t1 - 0.0041 16 0.7 0.0045 15.8 0.5 1 1 0 0 1 1 1 1 Clusterin | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:3675-4016 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~3675-4016 gag_pre-integrs PF13976.1 g13164.t1 - 0.00047 19.7 0.3 0.00061 19.3 0.2 1.2 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:283418-283684 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~283418-283684 SspB PF04386.8 g97472.t1 - 0.029 13.9 0.1 0.037 13.6 0 1.2 1 0 0 1 1 1 0 Stringent starvation protein B | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:110129-110494 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~110129-110494 zf-CCHC PF00098.18 g39714.t1 - 0.000051 22.9 1 0.000074 22.4 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:86473-86802 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~86473-86802 VHP PF02209.14 g76316.t1 - 0.11 12.1 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Villin headpiece domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:158823-159836 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~158823-159836 COPI_C PF06957.6 g64124.t1 - 3.3 6.1 5.4 3.4 6 3.7 1 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:381435-381830 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~381435-381830 ATHILA PF03078.10 g80093.t1 - 0.000046 22.1 0 0.021 13.4 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:101359-102316 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~101359-102316 RVP_2 PF08284.6 g34464.t1 - 0.00000027 30.5 0.1 0.00000031 30.3 0 1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:96619-96831 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~96619-96831 DUF3716 PF12511.3 g125831.t1 - 1 9 3.3 5.9 6.5 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3716) | Ref_seq=scaffold2781_contigs=1, transcript_loc=scaffold2781_contigs=1:73823-74104 Augustus predicted protein sequence Tobacco scaffold2781_contigs=1~73823-74104 Radial_spoke PF04712.7 g107606.t1 - 0.0056 15.4 3.5 0.0056 15.4 2.4 1.1 1 0 0 1 1 1 1 Radial spokehead-like protein | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:56738-58125 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~56738-58125 MitMem_reg PF13012.1 g30626.t1 - 0.0048 16.9 0.3 0.55 10.3 0 2.2 2 0 0 2 2 2 2 Maintenance of mitochondrial structure and function | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:43986-44486 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~43986-44486 DUF1985 PF09331.6 g118449.t1 - 0.011 15.6 0 0.014 15.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:144036-145193 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~144036-145193 Mec-17 PF05301.6 g63625.t1 - 0.1 12.5 0 15 5.5 0 2.2 1 1 1 2 2 2 0 Touch receptor neuron protein Mec-17 | Ref_seq=scaffold1378_contigs=1, transcript_loc=scaffold1378_contigs=1:4093-6641 Augustus predicted protein sequence Tobacco scaffold1378_contigs=1~4093-6641 DUF4201 PF13870.1 g89193.t1 - 0.012 15.1 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:54563-55024 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~54563-55024 DUF1371 PF07115.6 g120556.t1 - 0.00043 20.4 1.8 0.69 10.1 0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1371) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:211581-214912 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~211581-214912 DUF4283 PF14111.1 g35255.t1 - 0.093 11.8 0 0.15 11.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:285116-285990 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~285116-285990 FH2 PF02181.18 g106260.t1 - 0.068 12 0 0.081 11.7 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:19533-19895 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~19533-19895 DUF948 PF06103.6 g114424.t1 - 0.11 12.3 1 0.14 12 0.7 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold2649_contigs=6, transcript_loc=scaffold2649_contigs=6:71729-72028 Augustus predicted protein sequence Tobacco scaffold2649_contigs=6~71729-72028 PepSY_2 PF13670.1 g33641.t1 - 0.013 15.3 0 0.021 14.7 0 1.3 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:263747-264587 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~263747-264587 DUF3123 PF11321.3 g47323.t1 - 0.067 13.4 0 0.15 12.3 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3123) | Ref_seq=scaffold1094_contigs=5, transcript_loc=scaffold1094_contigs=5:73579-74461 Augustus predicted protein sequence Tobacco scaffold1094_contigs=5~73579-74461 SpoIIAA-like PF11964.3 g76466.t1 - 0.012 15.8 0.5 0.78 10 0 2.2 2 0 0 2 2 2 0 SpoIIAA-like | Ref_seq=scaffold1614_contigs=5, transcript_loc=scaffold1614_contigs=5:21456-27290 Augustus predicted protein sequence Tobacco scaffold1614_contigs=5~21456-27290 zf-CCHC PF00098.18 g68505.t1 - 0.00008 22.3 0.7 0.00013 21.7 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:257851-259020 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~257851-259020 ADIP PF11559.3 g13495.t1 - 0.0023 17.8 0 0.0026 17.6 0 1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:171581-171856 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~171581-171856 DUF4172 PF13776.1 g88370.t1 - 0.21 11.7 0 0.21 11.7 0 3 3 1 0 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:94332-95105 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~94332-95105 K_channel_TID PF07941.6 g844.t1 - 2.8 8.2 9.6 6 7.1 6.7 1.8 1 1 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain | Ref_seq=scaffold65_contigs=1, transcript_loc=scaffold65_contigs=1:28358-28603 Augustus predicted protein sequence Tobacco scaffold65_contigs=1~28358-28603 Herpes_IE68 PF02479.11 g118783.t1 - 0.015 14.4 0 0.05 12.7 0 1.8 2 0 0 2 2 2 0 Herpesvirus immediate early protein | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:85811-86426 Augustus predicted protein sequence Tobacco scaffold2706_contigs=4~85811-86426 ATHILA PF03078.10 g114865.t1 - 0.002 16.8 0.3 0.0021 16.7 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:242318-242596 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~242318-242596 DUF3861 PF12977.2 g43880.t1 - 0.018 15 0.1 0.026 14.6 0.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3861) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:234254-234586 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~234254-234586 TruB-C_2 PF09157.6 g105739.t1 - 0.12 12.2 0.2 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:84373-84660 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~84373-84660 UPF0506 PF11703.3 g55467.t1 - 0.15 12 5.4 0.24 11.4 1.1 2.2 2 0 0 2 2 2 0 UPF0506 | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:216621-216962 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~216621-216962 DUF1070 PF06376.7 g107268.t1 - 0.061 13.1 0.9 7.4 6.5 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1070) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1058211-1058462 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1058211-1058462 Fanconi_A PF03511.9 g55025.t1 - 0.0037 17 0 0.0068 16.1 0 1.3 1 0 0 1 1 1 1 Fanconi anaemia group A protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:388206-390093 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~388206-390093 T2SI PF02501.12 g11468.t1 - 0.12 12.3 0 0.19 11.7 0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein I | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:97270-97524 Augustus predicted protein sequence Tobacco scaffold408_contigs=6~97270-97524 Mu-conotoxin PF05374.7 g112195.t1 - 0.0016 18.1 1 1.9 8.3 0 2.6 2 0 0 2 2 2 2 Mu-Conotoxin | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:200314-202581 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~200314-202581 DUF4653 PF15546.1 g52900.t1 - 0.14 11.4 0.1 0.15 11.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4653) | Ref_seq=scaffold1182_contigs=8, transcript_loc=scaffold1182_contigs=8:373663-374004 Augustus predicted protein sequence Tobacco scaffold1182_contigs=8~373663-374004 HALZ PF02183.13 g123644.t1 - 0.000062 22.6 6.6 0.049 13.3 0.2 2.7 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:194470-194997 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~194470-194997 MYCBPAP PF14646.1 g94724.t1 - 0.086 11.5 0 0.098 11.3 0 1.1 1 0 0 1 1 1 0 MYCBP-associated protein family | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:25606-25944 Augustus predicted protein sequence Tobacco scaffold2045_contigs=9~25606-25944 Spy1 PF11357.3 g126511.t1 - 0.009 16 0 0.01 15.9 0 1 1 0 0 1 1 1 1 Cell cycle regulatory protein | Ref_seq=scaffold2797_contigs=1, transcript_loc=scaffold2797_contigs=1:11741-11947 Augustus predicted protein sequence Tobacco scaffold2797_contigs=1~11741-11947 Retrotrans_gag PF03732.12 g111156.t1 - 0.0012 18.8 0 0.0021 18.1 0 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:174968-175297 Augustus predicted protein sequence Tobacco scaffold2580_contigs=9~174968-175297 zf-CCHC PF00098.18 g53467.t1 - 0.000067 22.6 0.7 0.00011 21.9 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:389318-390563 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~389318-390563 ParBc_2 PF08857.6 g45859.t1 - 0.006 16.4 0 0.007 16.1 0 1.1 1 0 0 1 1 1 1 Putative ParB-like nuclease | Ref_seq=scaffold1050_contigs=5, transcript_loc=scaffold1050_contigs=5:84193-84558 Augustus predicted protein sequence Tobacco scaffold1050_contigs=5~84193-84558 DUF865 PF05906.6 g15764.t1 - 0.41 10.2 0.1 0.41 10.2 0 2.1 2 0 0 2 2 2 0 Herpesvirus-7 repeat of unknown function (DUF865) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:263478-264193 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~263478-264193 Lipoprotein_20 PF13942.1 g106377.t1 - 0.086 12.3 1.5 0.11 12 1.1 1.1 1 0 0 1 1 1 0 YfhG lipoprotein | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:59726-60040 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~59726-60040 Trp_Tyr_perm PF03222.8 g29926.t1 - 0.13 11 0 0.2 10.4 0 1.2 1 0 0 1 1 1 0 Tryptophan/tyrosine permease family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:41579-41926 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~41579-41926 zf-BED PF02892.10 g31532.t1 - 0.026 14.2 2.5 0.075 12.8 1.7 1.8 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold796_contigs=1, transcript_loc=scaffold796_contigs=1:1-487 Augustus predicted protein sequence Tobacco scaffold796_contigs=1~1-487 DUF4219 PF13961.1 g53097.t1 - 0.000082 21.9 1.9 0.00015 21.1 1.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:38469-39327 Augustus predicted protein sequence Tobacco scaffold1184_contigs=2~38469-39327 RVP_2 PF08284.6 g423.t1 - 3.7E-010 39.8 0.2 3.8E-010 39.8 0.1 1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:128366-128569 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~128366-128569 CblD PF07434.6 g36426.t1 - 0.11 11.2 0.3 0.11 11.2 0.2 1.1 1 0 0 1 1 1 0 CblD like pilus biogenesis initiator | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:61767-62030 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~61767-62030 Vir_act_alpha_C PF10400.4 g104546.t1 - 0.081 13.3 0.1 0.1 12.9 0.1 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:10431-10730 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~10431-10730 NHR2 PF08788.6 g26622.t1 - 0.12 11.9 0 0.2 11.1 0 1.3 1 0 0 1 1 1 0 NHR2 domain like | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:38673-39275 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~38673-39275 DUF4258 PF14076.1 g39566.t1 - 0.052 13.5 0.4 0.41 10.6 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:76939-77530 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~76939-77530 DUF4354 PF14263.1 g102566.t1 - 0.1 12.3 0.1 0.12 12.1 0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4354) | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:106563-106814 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~106563-106814 DUF842 PF05811.8 g24433.t1 - 0.013 14.9 1.7 0.02 14.3 1.2 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:195011-195445 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~195011-195445 TrbE PF11100.3 g53172.t1 - 0.095 12.5 0.2 0.18 11.7 0.2 1.5 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:95373-97221 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~95373-97221 NfrA_C PF13283.1 g77600.t1 - 0.077 12.3 0 12 5.2 0 2.1 2 0 0 2 2 2 0 Bacteriophage N adsorption protein A C-term | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:84120-84740 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~84120-84740 DUF4337 PF14235.1 g28605.t1 - 4.7 7 7.4 7.2 6.4 5.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold749_contigs=4, transcript_loc=scaffold749_contigs=4:18910-20139 Augustus predicted protein sequence Tobacco scaffold749_contigs=4~18910-20139 NPV_P10 PF05531.7 g59133.t1 - 0.0026 17.9 0.2 0.0044 17.2 0.1 1.4 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:60005-62124 Augustus predicted protein sequence Tobacco scaffold1281_contigs=3~60005-62124 HALZ PF02183.13 g122977.t1 - 0.078 12.7 3.7 0.15 11.7 2.6 1.5 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:301625-302359 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~301625-302359 Herpes_capsid PF06112.6 g26736.t1 - 3.1 7.8 8.1 3.1 7.8 5.6 1.1 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:235132-235347 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~235132-235347 2OG-FeII_Oxy_4 PF13661.1 g61408.t1 - 0.097 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:30022-31334 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~30022-31334 VGCC_beta4Aa_N PF12052.3 g47150.t1 - 0.0096 15.7 0.2 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:125905-126210 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~125905-126210 NESP55 PF06390.7 g46966.t1 - 4.6 6.5 8.6 5.2 6.3 6 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:56322-58792 Augustus predicted protein sequence Tobacco scaffold1083_contigs=11~56322-58792 Myosin_tail_1 PF01576.14 g52792.t1 - 0.018 12.8 1.2 0.022 12.5 0.8 1.1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1102058-1102657 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1102058-1102657 TAF1D PF15333.1 g11894.t1 - 0.017 14.8 4.8 0.022 14.5 3.3 1.2 1 0 0 1 1 1 0 TATA box-binding protein-associated factor 1D | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:188449-189169 Augustus predicted protein sequence Tobacco scaffold416_contigs=9~188449-189169 DUF2205 PF10224.4 g77944.t1 - 0.028 13.9 0.8 0.062 12.8 0.1 1.7 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:76886-77173 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~76886-77173 Img2 PF05046.9 g63125.t1 - 0.0000024 27.6 0.1 0.0034 17.5 0 2.2 2 0 0 2 2 2 2 Mitochondrial large subunit ribosomal protein (Img2) | Ref_seq=scaffold1367_contigs=11, transcript_loc=scaffold1367_contigs=11:13814-15568 Augustus predicted protein sequence Tobacco scaffold1367_contigs=11~13814-15568 DUF3729 PF12526.3 g48163.t1 - 0.099 14 2.1 0.17 13.2 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3729) | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:422737-423449 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~422737-423449 Reprolysin PF01421.14 g38197.t1 - 0.11 12 0.1 0.11 12 0.1 1 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:128532-128756 Augustus predicted protein sequence Tobacco scaffold931_contigs=12~128532-128756 UBN2_2 PF14227.1 g102087.t1 - 0.0078 15.7 0 0.0087 15.6 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:59122-59346 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~59122-59346 SNARE PF05739.14 g83505.t1 - 0.078 12.6 5 0.97 9.1 0.2 3 3 1 1 4 4 4 0 SNARE domain | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:126082-127131 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~126082-127131 RepB-RCR_reg PF10723.4 g68047.t1 - 0.065 12.9 2.5 0.11 12.2 0.2 1.9 2 0 0 2 2 2 0 Replication regulatory protein RepB | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:247300-247629 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~247300-247629 KTI12 PF08433.5 g11279.t1 - 0.091 11.9 0.2 0.1 11.7 0.1 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:100382-101051 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~100382-101051 Terpene_synth_C PF03936.11 g120513.t1 - 0.13 11.4 0.1 0.17 11 0.1 1.1 1 0 0 1 1 1 0 Terpene synthase family, metal binding domain | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:121747-124751 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~121747-124751 zf-Dof PF02701.10 g108127.t1 - 0.02 14.7 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Dof domain, zinc finger | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:482896-483210 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~482896-483210 Retrotrans_gag PF03732.12 g123473.t1 - 0.063 13.3 0.1 0.094 12.8 0.1 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:44627-45203 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~44627-45203 Transposase_28 PF04195.7 g128420.t1 - 0.024 13.9 0 0.032 13.5 0 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:24040-25040 Augustus predicted protein sequence Tobacco scaffold2867_contigs=1~24040-25040 DUF2884 PF11101.3 g1658.t1 - 0.055 12.8 0.4 0.084 12.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:63805-66380 Augustus predicted protein sequence Tobacco scaffold191_contigs=2~63805-66380 zf-CCHC PF00098.18 g129353.t1 - 0.000085 22.3 0.7 0.00016 21.4 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:14347-15237 Augustus predicted protein sequence Tobacco scaffold2942_contigs=1~14347-15237 FH2 PF02181.18 g111936.t1 - 0.055 12.3 0.1 0.064 12.1 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:127580-127999 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~127580-127999 HR1 PF02185.11 g8791.t1 - 0.052 13.2 0.5 0.13 12 0 1.8 2 0 0 2 2 2 0 Hr1 repeat | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:190288-191905 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~190288-191905 HALZ PF02183.13 g68781.t1 - 0.11 12.2 5.1 0.25 11.1 0.4 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:68844-69587 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~68844-69587 BRF1 PF07741.8 g123912.t1 - 0.048 13.8 5.4 0.066 13.4 3.8 1.2 1 0 0 1 1 1 0 Brf1-like TBP-binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:890784-891212 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~890784-891212 DUF863 PF05904.6 g67416.t1 - 0.033 12.4 0.2 0.034 12.4 0.1 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF863) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:235910-236477 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~235910-236477 Casc1 PF12366.3 g8687.t1 - 0.079 12.4 0.6 0.11 11.9 0.4 1.2 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:31882-34491 Augustus predicted protein sequence Tobacco scaffold343_contigs=1~31882-34491 DUF2526 PF10735.4 g111042.t1 - 0.0079 16.1 0.3 0.015 15.2 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2526) | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:128831-129118 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~128831-129118 Dehydratase_LU PF02286.10 g44954.t1 - 0.053 11.7 0 0.063 11.5 0 1 1 0 0 1 1 1 0 Dehydratase large subunit | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:82008-83905 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~82008-83905 ATP-synt_DE PF00401.15 g127053.t1 - 1.3 8.9 4.4 2.1 8.2 3.1 1.3 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:45586-45986 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~45586-45986 DUF3893 PF13032.1 g82122.t1 - 0.11 12.5 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:709489-709881 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~709489-709881 TAFH PF07531.9 g125960.t1 - 0.04 13.5 0.1 0.053 13.1 0 1.2 1 0 0 1 1 1 0 NHR1 homology to TAF | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:89031-89559 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~89031-89559 SFTA2 PF15210.1 g57639.t1 - 0.99 9 4.1 18 4.9 0 2.8 3 0 0 3 3 3 0 Surfactant-associated protein 2 | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:102410-102940 Augustus predicted protein sequence Tobacco scaffold1253_contigs=5~102410-102940 Tmemb_cc2 PF10267.4 g128696.t1 - 0.0018 16.9 0.7 0.0021 16.7 0.5 1.1 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold2882_contigs=1, transcript_loc=scaffold2882_contigs=1:37944-39241 Augustus predicted protein sequence Tobacco scaffold2882_contigs=1~37944-39241 DUF4379 PF14311.1 g12860.t1 - 0.12 12.2 2.3 0.16 11.7 1.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:61436-62922 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~61436-62922 PRT_C PF08372.5 g40058.t1 - 0.12 11.8 0.1 0.15 11.5 0.1 1.1 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:340430-341508 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~340430-341508 CENP-F_C_Rb_bdg PF10490.4 g85153.t1 - 0.11 11.7 0 0.19 11 0 1.3 1 0 0 1 1 1 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:335963-336375 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~335963-336375 DUF3759 PF12585.3 g127409.t1 - 0.058 13.2 0 0.076 12.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3759) | Ref_seq=scaffold2824_contigs=1, transcript_loc=scaffold2824_contigs=1:18596-19003 Augustus predicted protein sequence Tobacco scaffold2824_contigs=1~18596-19003 FH2 PF02181.18 g121021.t1 - 0.043 12.6 0 0.049 12.5 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:226824-227150 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~226824-227150 Thioredoxin PF00085.15 g90130.t1 - 0.025 14.2 0 0.56 9.9 0 2.2 2 0 0 2 2 2 0 Thioredoxin | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:146021-148618 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~146021-148618 zf-CCHC PF00098.18 g52357.t1 - 0.045 13.7 1.9 0.062 13.2 1.3 1.2 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:98816-99019 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~98816-99019 Nop14 PF04147.7 g109695.t1 - 0.87 7.4 26.5 0.86 7.4 18.4 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:321968-322360 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~321968-322360 DUF2054 PF10218.4 g62373.t1 - 0.08 12.7 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2054) | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:16615-19838 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~16615-19838 MCR_gamma PF02240.11 g96978.t1 - 0.027 13.6 0 0.033 13.3 0 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:209649-209975 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~209649-209975 DUF3774 PF12609.3 g128334.t1 - 0.0018 19 0.3 0.0024 18.7 0.2 1.4 1 1 0 1 1 1 1 Wound-induced protein | Ref_seq=scaffold2862_contigs=1, transcript_loc=scaffold2862_contigs=1:46271-46489 Augustus predicted protein sequence Tobacco scaffold2862_contigs=1~46271-46489 DUF1199 PF06712.6 g108737.t1 - 0.024 14.4 0.1 0.052 13.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:129240-129500 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~129240-129500 ALIX_LYPXL_bnd PF13949.1 g32759.t1 - 0.0025 16.8 0.4 0.0025 16.8 0.3 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:832345-832641 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~832345-832641 Trypan_PARP PF05887.6 g71114.t1 - 3.8 7.3 17.2 4.9 6.9 11.9 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:54198-54500 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~54198-54500 Sugarporin_N PF11471.3 g44826.t1 - 0.024 14.2 3.1 0.024 14.2 2.2 1.6 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:270557-270898 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~270557-270898 RVP_2 PF08284.6 g89271.t1 - 3.5E-012 46.4 0 4.5E-012 46 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:189696-190235 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~189696-190235 Gly-rich_Ago1 PF12764.2 g122126.t1 - 3.8 8.2 5.4 1 10 1.4 1.7 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:293007-298912 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~293007-298912 PepSY_TM_2 PF13703.1 g765.t1 - 0.27 11.4 1.2 0.38 10.9 0.8 1.2 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:99674-100279 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~99674-100279 ig PF00047.20 g47751.t1 - 0.043 13.9 0.1 0.069 13.2 0.1 1.5 1 1 0 1 1 1 0 Immunoglobulin domain | Ref_seq=scaffold1100_contigs=3, transcript_loc=scaffold1100_contigs=3:3662-3961 Augustus predicted protein sequence Tobacco scaffold1100_contigs=3~3662-3961 RNase_Zc3h12a_2 PF14626.1 g57753.t1 - 0.022 14.6 0.2 0.029 14.2 0.1 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain | Ref_seq=scaffold1259_contigs=1, transcript_loc=scaffold1259_contigs=1:66015-66392 Augustus predicted protein sequence Tobacco scaffold1259_contigs=1~66015-66392 DUF448 PF04296.8 g63459.t1 - 0.12 12 0.3 0.67 9.6 0.1 2 1 1 1 2 2 2 0 Protein of unknown function (DUF448) | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:388070-388463 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~388070-388463 Ribosomal_L28 PF00830.14 g113712.t1 - 0.049 13.4 0 9 6.2 0 2.2 2 0 0 2 2 2 0 Ribosomal L28 family | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:257119-257948 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~257119-257948 FhuF PF06276.7 g55361.t1 - 0.089 12.7 0.1 0.56 10.1 0 1.7 1 1 0 2 2 2 0 Ferric iron reductase FhuF-like transporter | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:202900-203139 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~202900-203139 DUF809 PF05663.6 g85962.t1 - 1.4 8.8 4.7 11 5.9 3.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF809) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:244762-245058 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~244762-245058 Spore_YhaL PF14147.1 g114353.t1 - 0.11 11.9 0.3 0.21 11 0.2 1.6 1 0 0 1 1 1 0 Sporulation protein YhaL | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:100658-103580 Augustus predicted protein sequence Tobacco scaffold2646_contigs=41~100658-103580 DUF3088 PF11287.3 g67748.t1 - 0.024 14 0.1 0.038 13.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3088) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:161433-162786 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~161433-162786 NAM-associated PF14303.1 g5904.t1 - 0.000028 24.5 4.5 0.00003 24.3 3.1 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold285_contigs=5, transcript_loc=scaffold285_contigs=5:38595-40235 Augustus predicted protein sequence Tobacco scaffold285_contigs=5~38595-40235 GP41 PF00517.12 g31647.t1 - 0.12 11.9 4.3 0.14 11.6 3 1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:14401-14682 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~14401-14682 Med19 PF10278.4 g86346.t1 - 0.18 11.4 4.5 0.24 11 3.1 1.2 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:100247-100796 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~100247-100796 RE_NgoFVII PF09565.5 g3033.t1 - 0.033 13.1 1.7 0.04 12.8 1.2 1.1 1 0 0 1 1 1 0 NgoFVII restriction endonuclease | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:176277-176883 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~176277-176883 2Fe-2S_Ferredox PF11591.3 g81024.t1 - 0.091 12.4 0.4 0.23 11.1 0.3 1.6 1 0 0 1 1 1 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:66629-66991 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~66629-66991 DUF3295 PF11702.3 g5193.t1 - 0.36 9.7 3.3 0.35 9.8 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3295) | Ref_seq=scaffold273_contigs=2, transcript_loc=scaffold273_contigs=2:41158-41670 Augustus predicted protein sequence Tobacco scaffold273_contigs=2~41158-41670 PMD PF10536.4 g64781.t1 - 0.001 18.1 0 0.001 18.1 0 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:162021-163207 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~162021-163207 DUF4201 PF13870.1 g97036.t1 - 0.029 13.8 0 0.038 13.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:365358-365654 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~365358-365654 PsbL PF02419.12 g101507.t1 - 0.069 12.5 0 0.15 11.5 0 1.5 1 0 0 1 1 1 0 PsbL protein | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:187095-189112 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~187095-189112 VDE PF07137.6 g102924.t1 - 4.8 6.9 6.5 13 5.5 4.5 1.6 1 1 0 1 1 1 0 Violaxanthin de-epoxidase (VDE) | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:47373-48523 Augustus predicted protein sequence Tobacco scaffold2272_contigs=16~47373-48523 DUF4172 PF13776.1 g5529.t1 - 0.18 11.8 1.6 1.8 8.6 0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:216191-217117 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~216191-217117 MCD PF05292.6 g116877.t1 - 0.096 11.3 0 0.1 11.2 0 1.1 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:9685-9960 Augustus predicted protein sequence Tobacco scaffold2678_contigs=5~9685-9960 PdxJ PF03740.8 g38734.t1 - 0.012 14.7 0.1 0.014 14.5 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:48853-49503 Augustus predicted protein sequence Tobacco scaffold943_contigs=4~48853-49503 CBP PF12192.3 g34105.t1 - 0.11 12.4 0.1 0.18 11.7 0 1.3 1 0 0 1 1 1 0 Fungal calcium binding protein | Ref_seq=scaffold843_contigs=7, transcript_loc=scaffold843_contigs=7:123229-123685 Augustus predicted protein sequence Tobacco scaffold843_contigs=7~123229-123685 Apolipoprotein PF01442.13 g33329.t1 - 0.009 15.5 1 0.013 14.9 0.7 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:61574-61894 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~61574-61894 Endonuclease_5 PF04493.9 g39964.t1 - 0.24 10.7 0.9 0.7 9.2 0.5 1.7 2 0 0 2 2 2 0 Endonuclease V | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:69877-70416 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~69877-70416 DUF4219 PF13961.1 g62173.t1 - 0.00094 18.5 0.7 0.00094 18.5 0.5 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:114213-114452 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~114213-114452 HOOK PF05622.7 g118126.t1 - 0.024 12.4 0.1 0.026 12.3 0.1 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:294408-294650 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~294408-294650 Myosin_tail_1 PF01576.14 g101552.t1 - 0.088 10.5 0.3 0.1 10.2 0.2 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:300922-301227 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~300922-301227 Leucyl-specific PF14795.1 g83331.t1 - 0.0029 17.4 1 13 5.7 0 3.4 3 0 0 3 3 3 3 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold1785_contigs=3, transcript_loc=scaffold1785_contigs=3:682-2938 Augustus predicted protein sequence Tobacco scaffold1785_contigs=3~682-2938 Matrilin_ccoil PF10393.4 g129707.t1 - 0.00015 21 0.1 0.45 9.9 0 2.5 2 0 0 2 2 2 2 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3029_contigs=1, transcript_loc=scaffold3029_contigs=1:4330-6621 Augustus predicted protein sequence Tobacco scaffold3029_contigs=1~4330-6621 zf-UBR PF02207.15 g80426.t1 - 0.15 11.8 3.7 0.37 10.5 2.6 1.7 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:228086-229384 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~228086-229384 Lebercilin PF15619.1 g4169.t1 - 0.018 14.5 0.2 0.018 14.4 0.1 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:36452-36718 Augustus predicted protein sequence Tobacco scaffold254_contigs=6~36452-36718 VGCC_beta4Aa_N PF12052.3 g9693.t1 - 0.026 14.3 0.1 0.037 13.8 0.1 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:102439-102918 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~102439-102918 DUF3982 PF13138.1 g89441.t1 - 0.05 13.4 0 0.091 12.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3982) | Ref_seq=scaffold1947_contigs=6, transcript_loc=scaffold1947_contigs=6:6168-7097 Augustus predicted protein sequence Tobacco scaffold1947_contigs=6~6168-7097 PDDEXK_5 PF11645.3 g66749.t1 - 0.17 11.5 0.2 0.24 11 0.1 1.2 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:579558-580007 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~579558-580007 CaM-KIIN PF15170.1 g80441.t1 - 0.48 10.4 2.6 9.5 6.2 0.1 3.3 1 1 3 4 4 4 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:17013-19964 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~17013-19964 PAH PF02671.16 g111892.t1 - 0.029 14 0 0.047 13.3 0 1.4 1 0 0 1 1 1 0 Paired amphipathic helix repeat | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:40648-41456 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~40648-41456 DUF2894 PF11445.3 g72927.t1 - 0.0094 16.2 1.4 0.011 16 1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF2894) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:54966-55232 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~54966-55232 DUF2960 PF11173.3 g58999.t1 - 0.12 12.7 0 0.23 11.7 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2960) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:382097-383367 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~382097-383367 PI-PLC-X PF00388.14 g80978.t1 - 0.13 11.6 0 0.2 11 0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:206855-207721 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~206855-207721 Smr PF01713.16 g128544.t1 - 0.13 12.4 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Smr domain | Ref_seq=scaffold2875_contigs=1, transcript_loc=scaffold2875_contigs=1:6865-7383 Augustus predicted protein sequence Tobacco scaffold2875_contigs=1~6865-7383 Trypan_PARP PF05887.6 g74801.t1 - 0.084 12.6 17.4 0.098 12.4 12.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:104954-105405 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~104954-105405 Birna_VP5 PF03042.9 g39201.t1 - 0.08 12.4 0.4 0.4 10.1 0.1 2 2 0 0 2 2 2 0 Birnavirus VP5 protein | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:104678-105181 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~104678-105181 zf-UDP PF14569.1 g2799.t1 - 3.7 7.3 5.3 19 5.1 0.6 2.1 1 1 1 2 2 2 0 Zinc-binding RING-finger | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:163330-163695 Augustus predicted protein sequence Tobacco scaffold218_contigs=4~163330-163695 DUF605 PF04652.11 g38527.t1 - 0.95 8.7 14.7 1.1 8.5 10.2 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:136217-137118 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~136217-137118 LRS4 PF10422.4 g129436.t1 - 0.034 13.5 3.3 0.026 13.8 1.6 1.3 1 1 0 1 1 1 0 Monopolin complex subunit LRS4 | Ref_seq=scaffold2955_contigs=1, transcript_loc=scaffold2955_contigs=1:6618-7292 Augustus predicted protein sequence Tobacco scaffold2955_contigs=1~6618-7292 GTSE1_N PF15259.1 g24488.t1 - 0.063 13.2 0.5 0.084 12.8 0.3 1.2 1 0 0 1 1 1 0 G-2 and S-phase expressed 1 | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:61406-61922 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~61406-61922 DUF4219 PF13961.1 g46823.t1 - 0.016 14.6 0.1 0.016 14.6 0.1 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1077_contigs=2, transcript_loc=scaffold1077_contigs=2:18650-19562 Augustus predicted protein sequence Tobacco scaffold1077_contigs=2~18650-19562 DUF4610 PF15384.1 g59896.t1 - 0.11 11.9 1.4 0.24 10.8 0.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4610) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:108962-109318 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~108962-109318 IFT43 PF15305.1 g94540.t1 - 0.049 13.6 0.6 0.063 13.3 0.4 1.3 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:12842-13252 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~12842-13252 OSTbeta PF15048.1 g25689.t1 - 0.024 14.7 0.7 0.031 14.3 0.5 1.1 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein | Ref_seq=scaffold703_contigs=10, transcript_loc=scaffold703_contigs=10:69610-69939 Augustus predicted protein sequence Tobacco scaffold703_contigs=10~69610-69939 MSA-2c PF12238.3 g93787.t1 - 8.3 6 9.2 0.95 9 0.5 2.3 2 0 0 2 2 2 0 Merozoite surface antigen 2c | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:27490-28496 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~27490-28496 LpxD PF04613.9 g29507.t1 - 0.035 13.6 0 0.06 12.8 0 1.4 1 0 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:81468-82588 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~81468-82588 TruB-C_2 PF09157.6 g123879.t1 - 0.11 12.4 0.2 0.2 11.5 0.1 1.4 1 1 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:795444-795680 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~795444-795680 Raptor_N PF14538.1 g125892.t1 - 0.0052 16.6 0.4 0.0052 16.6 0.3 1.9 1 1 1 2 2 2 1 Raptor N-terminal CASPase like domain | Ref_seq=scaffold2782_contigs=1, transcript_loc=scaffold2782_contigs=1:88649-89694 Augustus predicted protein sequence Tobacco scaffold2782_contigs=1~88649-89694 PAN_1 PF00024.21 g111725.t1 - 0.019 14.6 1.3 5.1 6.9 0.1 2.3 2 0 0 2 2 2 0 PAN domain | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:62702-64549 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~62702-64549 EMP24_GP25L PF01105.19 g117480.t1 - 0.036 13.7 0 0.038 13.7 0 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:55886-56107 Augustus predicted protein sequence Tobacco scaffold2686_contigs=11~55886-56107 bcl-2I13 PF12201.3 g64599.t1 - 0.072 12.5 0 0.13 11.7 0 1.3 1 1 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:77699-78491 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~77699-78491 Myc_N PF01056.13 g10938.t1 - 0.081 12 1.2 0.088 11.9 0.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:273252-273569 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~273252-273569 YqhG PF11079.3 g92769.t1 - 0.07 11.9 0.5 0.075 11.8 0.4 1 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:162912-163214 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~162912-163214 DUF1936 PF09151.5 g39934.t1 - 0.099 12.1 0.3 2.6 7.6 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:5731-6904 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~5731-6904 DUF4219 PF13961.1 g95008.t1 - 0.0053 16.1 0.8 0.013 14.9 0.6 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:124901-125308 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~124901-125308 DUF869 PF05911.6 g74883.t1 - 0.0071 14.6 7.3 0.0095 14.2 5.1 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:287179-287463 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~287179-287463 Troponin-I_N PF11636.3 g88660.t1 - 3 7.5 5.6 1.1 9 0.4 2.4 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:106505-107200 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~106505-107200 PGBA_C PF15437.1 g14773.t1 - 0.078 13.1 1.3 0.15 12.2 0.9 1.3 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA C-terminal | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:167202-170718 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~167202-170718 DUF3060 PF11259.3 g122324.t1 - 0.0069 15.9 0 0.026 14.1 0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3060) | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:132086-132415 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~132086-132415 DUF740 PF05340.7 g65492.t1 - 0.06 11.7 1.6 0.061 11.6 1.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF740) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:36624-36836 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~36624-36836 DUF3643 PF12356.3 g43660.t1 - 0.0054 16 0.2 0.011 15 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3643) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:324072-327665 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~324072-327665 Desulfoferrodox PF01880.13 g115267.t1 - 0.042 14.1 0.2 0.082 13.1 0.1 1.4 1 1 0 1 1 1 0 Desulfoferrodoxin | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:352394-354584 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~352394-354584 Bul1_C PF04426.7 g128341.t1 - 0.095 11.8 0.1 0.1 11.7 0.1 1.1 1 0 0 1 1 1 0 Bul1 C terminus | Ref_seq=scaffold2863_contigs=1, transcript_loc=scaffold2863_contigs=1:21114-21504 Augustus predicted protein sequence Tobacco scaffold2863_contigs=1~21114-21504 rve PF00665.21 g93618.t1 - 0.0013 18.7 0 0.0019 18.2 0 1.2 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:221319-223487 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~221319-223487 MBOAT_2 PF13813.1 g28736.t1 - 0.023 14.7 0 0.026 14.5 0 1.2 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:149426-149737 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~149426-149737 SKN1 PF03935.10 g17827.t1 - 0.087 10.9 0 0.095 10.8 0 1 1 0 0 1 1 1 0 Beta-glucan synthesis-associated protein (SKN1) | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:311215-311415 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~311215-311415 Motilin_assoc PF04643.7 g86285.t1 - 0.15 11.6 0 0.24 10.9 0 1.3 1 0 0 1 1 1 0 Motilin/ghrelin-associated peptide | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:36298-36765 Augustus predicted protein sequence Tobacco scaffold1843_contigs=11~36298-36765 Nop14 PF04147.7 g46763.t1 - 0.03 12.2 18 0.048 11.5 12.5 1.3 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:91578-94585 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~91578-94585 ATHILA PF03078.10 g36381.t1 - 0.00000023 29.7 0 0.00000026 29.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:35590-35976 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~35590-35976 Prolamin_like PF05617.6 g104346.t1 - 0.0062 16.6 2.3 0.0079 16.2 1.6 1.2 1 0 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:590746-591100 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~590746-591100 Mcp5_PH PF12814.2 g83468.t1 - 0.0078 16.1 0.1 0.009 15.9 0.1 1.1 1 0 0 1 1 1 1 Meiotic cell cortex C-terminal pleckstrin homology | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:41202-41441 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~41202-41441 DUF4207 PF13904.1 g31500.t1 - 0.046 13.1 8.1 0.055 12.8 5.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4207) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:233813-234548 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~233813-234548 Sorting_nexin PF03700.8 g43793.t1 - 0.0017 18.4 3.3 0.0048 16.9 2.1 1.8 1 1 1 2 2 2 1 Sorting nexin, N-terminal domain | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:4340-4792 Augustus predicted protein sequence Tobacco scaffold1029_contigs=5~4340-4792 SH3_4 PF06347.8 g77274.t1 - 0.069 12.7 1.2 0.13 11.8 0.8 1.4 1 0 0 1 1 1 0 Bacterial SH3 domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:217656-221325 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~217656-221325 Ldr_toxin PF13940.1 g67506.t1 - 0.2 11.4 0.3 0.2 11.4 0.2 2 2 1 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:1604-1852 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~1604-1852 RVT_3 PF13456.1 g95614.t1 - 0.0056 16.4 0.2 3.3 7.5 0 2.3 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:143148-143879 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~143148-143879 DUF3987 PF13148.1 g85669.t1 - 0.4 9.2 18.8 0.38 9.2 13 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:302087-302287 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~302087-302287 Minor_capsid_3 PF12691.2 g130319.t1 - 0.026 14.2 0 0.028 14.1 0 1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold4012_contigs=1, transcript_loc=scaffold4012_contigs=1:447-683 Augustus predicted protein sequence Tobacco scaffold4012_contigs=1~447-683 DUF1347 PF07079.6 g117542.t1 - 0.11 10.7 0 0.12 10.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2688_contigs=4, transcript_loc=scaffold2688_contigs=4:123023-123484 Augustus predicted protein sequence Tobacco scaffold2688_contigs=4~123023-123484 DUF1160 PF06648.6 g36590.t1 - 0.059 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:68114-68592 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~68114-68592 SURF2 PF05477.6 g95010.t1 - 0.016 14.3 4 0.02 14 2.8 1.1 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:128487-129080 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~128487-129080 PBP_sp32 PF07222.7 g123223.t1 - 7 5.7 9.8 8 5.5 6.8 1.3 1 1 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:105814-106188 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~105814-106188 PROL5-SMR PF15621.1 g58119.t1 - 3.6 8 6.2 6.1 7.3 4.2 1.7 1 1 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:409379-409879 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~409379-409879 Pox_A6 PF04924.7 g63559.t1 - 0.16 10.7 0.1 0.17 10.6 0.1 1.1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:221484-221714 Augustus predicted protein sequence Tobacco scaffold1375_contigs=5~221484-221714 HTH_16 PF12645.2 g129253.t1 - 0.087 12.7 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold2930_contigs=1, transcript_loc=scaffold2930_contigs=1:16839-17640 Augustus predicted protein sequence Tobacco scaffold2930_contigs=1~16839-17640 Cys_rich_CPCC PF14206.1 g24301.t1 - 0.049 13.1 0.1 0.073 12.6 0 1.4 1 1 0 1 1 1 0 Cysteine-rich CPCC | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:86216-87022 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~86216-87022 HupF_HypC PF01455.13 g3119.t1 - 0.052 13.5 0.1 0.1 12.5 0.1 1.6 1 1 1 2 2 2 0 HupF/HypC family | Ref_seq=scaffold226_contigs=4, transcript_loc=scaffold226_contigs=4:34569-34927 Augustus predicted protein sequence Tobacco scaffold226_contigs=4~34569-34927 UBN2_2 PF14227.1 g68780.t1 - 0.034 13.6 0.8 0.84 9.2 0 2.4 1 1 2 3 3 3 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:67935-68744 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~67935-68744 DBD_Tnp_Mut PF03108.10 g87574.t1 - 5.5E-011 41.8 0.6 9.1E-011 41.1 0.4 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:23340-23984 Augustus predicted protein sequence Tobacco scaffold1886_contigs=2~23340-23984 DNA_photolyase PF00875.13 g98370.t1 - 0.069 12.8 0 0.12 12 0 1.2 1 1 0 1 1 1 0 DNA photolyase | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:21626-21925 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~21626-21925 EGF_3 PF12947.2 g50086.t1 - 0.14 12.1 0.4 0.18 11.7 0.3 1.2 1 0 0 1 1 1 0 EGF domain | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:241354-242553 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~241354-242553 FH2 PF02181.18 g10109.t1 - 0.021 13.7 0 0.034 13 0 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:127408-128166 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~127408-128166 ATP-synt_ab PF00006.20 g2416.t1 - 0.15 11.5 0.1 0.17 11.3 0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain | Ref_seq=scaffold211_contigs=1, transcript_loc=scaffold211_contigs=1:4745-5932 Augustus predicted protein sequence Tobacco scaffold211_contigs=1~4745-5932 APG6 PF04111.7 g58633.t1 - 0.058 12.4 1.2 0.066 12.2 0.8 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:321993-322256 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~321993-322256 DUF1985 PF09331.6 g55208.t1 - 0.022 14.5 0.1 1.7 8.4 0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:59326-60627 Augustus predicted protein sequence Tobacco scaffold1216_contigs=10~59326-60627 DUF4172 PF13776.1 g99882.t1 - 0.55 10.3 0.1 0.55 10.3 0 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:321799-322752 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~321799-322752 Cep57_CLD_2 PF14197.1 g71636.t1 - 2.8 7.9 8.8 0.083 12.8 0.8 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:200274-201784 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~200274-201784 OstA_2 PF13100.1 g51044.t1 - 0.0015 17.8 0.3 0.0021 17.4 0.2 1.2 1 0 0 1 1 1 1 OstA-like protein | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:248905-249498 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~248905-249498 Tymo_45kd_70kd PF03251.8 g103353.t1 - 0.084 11.5 0.2 0.11 11.1 0.1 1.1 1 0 0 1 1 1 0 Tymovirus 45/70Kd protein | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:154414-158348 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~154414-158348 Ashwin PF15323.1 g3245.t1 - 0.27 11.2 2.8 0.36 10.8 2 1.3 1 0 0 1 1 1 0 Developmental protein | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:94314-94592 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~94314-94592 Retrotrans_gag PF03732.12 g76177.t1 - 0.073 13.1 0 0.099 12.7 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:173682-174142 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~173682-174142 Peptidase_S49_N PF08496.5 g36592.t1 - 1 9.1 8.3 0.99 9.1 5.7 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:72169-72396 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~72169-72396 DGF-1_4 PF11024.3 g61287.t1 - 0.11 12.8 4.2 4.4 7.7 0.3 2.4 1 1 1 2 2 2 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:98792-100489 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~98792-100489 Cellulose_synt PF03552.9 g116494.t1 - 6.1 5 6.7 10 4.2 4.6 1.3 1 0 0 1 1 1 0 Cellulose synthase | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:217650-218819 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~217650-218819 SicP-binding PF09119.5 g53351.t1 - 0.087 12.5 0 0.13 11.9 0 1.3 1 0 0 1 1 1 0 SicP binding | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:154849-155184 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~154849-155184 ARHGEF5_35 PF15441.1 g77114.t1 - 0.052 12.3 0.3 0.06 12.1 0.2 1 1 0 0 1 1 1 0 Rho guanine nucleotide exchange factor 5/35 | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:34964-35498 Augustus predicted protein sequence Tobacco scaffold1626_contigs=2~34964-35498 DUF605 PF04652.11 g11341.t1 - 1.2 8.5 6 1.3 8.3 4.1 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:1469-3780 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~1469-3780 SPG48 PF14764.1 g69346.t1 - 0.01 14.3 0.1 1.1 7.6 0 2 2 0 0 2 2 2 0 AP-5 complex subunit, vesicle trafficking | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:49115-49606 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~49115-49606 Peptidase_S46 PF10459.4 g25060.t1 - 0.053 11.9 0.7 0.061 11.7 0.5 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:59085-60191 Augustus predicted protein sequence Tobacco scaffold686_contigs=3~59085-60191 Porphobil_deam PF01379.15 g96043.t1 - 0.15 10.9 0 0.17 10.8 0 1.1 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:78961-79227 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~78961-79227 DEADboxA PF12343.3 g42633.t1 - 1.6 9 10.2 0.17 12.1 3.7 1.8 2 0 0 2 2 2 0 Cold shock protein DEAD box A | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:211652-212321 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~211652-212321 Toxin_22 PF08092.6 g115543.t1 - 0.0055 16.5 0.7 0.011 15.5 0.5 1.4 1 0 0 1 1 1 1 Magi peptide toxin family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:607752-610264 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~607752-610264 Gln-synt_N PF03951.14 g78976.t1 - 0.11 12.1 2.1 14 5.3 0.1 2.9 1 1 2 3 3 3 0 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold1679_contigs=9, transcript_loc=scaffold1679_contigs=9:41782-43548 Augustus predicted protein sequence Tobacco scaffold1679_contigs=9~41782-43548 DUF2614 PF11023.3 g77365.t1 - 0.094 12.4 0 0.1 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:377961-378566 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~377961-378566 PNRC PF15365.1 g127840.t1 - 0.011 15.6 1.2 0.011 15.6 0.8 1.7 1 1 1 2 2 2 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:4214-5453 Augustus predicted protein sequence Tobacco scaffold2839_contigs=1~4214-5453 Aldose_epim PF01263.15 g15964.t1 - 0.096 11.7 0 0.14 11.1 0 1.2 1 0 0 1 1 1 0 Aldose 1-epimerase | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:186991-187701 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~186991-187701 RVT_2 PF07727.9 g3834.t1 - 0.0000018 27.1 0 0.0000023 26.7 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:98269-100501 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~98269-100501 TelA PF05816.6 g99675.t1 - 0.1 11.2 0 0.12 11 0 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) | Ref_seq=scaffold2176_contigs=19, transcript_loc=scaffold2176_contigs=19:77959-78405 Augustus predicted protein sequence Tobacco scaffold2176_contigs=19~77959-78405 DUF724 PF05266.9 g115437.t1 - 7.8 6 9.6 13 5.3 6.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:359208-360866 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~359208-360866 Josephin PF02099.12 g112175.t1 - 0.015 14.9 0.2 0.018 14.6 0.1 1.1 1 0 0 1 1 1 0 Josephin | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:152653-152949 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~152653-152949 DUF3772 PF12607.3 g24711.t1 - 0.15 11.7 0.3 0.25 11 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3772) | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:89985-90338 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~89985-90338 Glyco_hydro_77 PF02446.12 g128574.t1 - 0.079 11.5 0.1 0.097 11.2 0 1.1 1 0 0 1 1 1 0 4-alpha-glucanotransferase | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:17493-17888 Augustus predicted protein sequence Tobacco scaffold2876_contigs=1~17493-17888 MIP-T3 PF10243.4 g16287.t1 - 0.018 13.5 0.7 0.018 13.5 0.5 1.4 1 1 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold511_contigs=4, transcript_loc=scaffold511_contigs=4:132969-133322 Augustus predicted protein sequence Tobacco scaffold511_contigs=4~132969-133322 AgrD PF05931.6 g70113.t1 - 2.3 7.8 4.8 0.39 10.3 0.4 1.9 2 0 0 2 2 2 0 Staphylococcal AgrD protein | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:262977-264002 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~262977-264002 Zein-binding PF04576.10 g56337.t1 - 0.11 12.6 8.7 0.19 11.8 6 1.4 1 0 0 1 1 1 0 Zein-binding | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:474578-475830 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~474578-475830 DUF2254 PF10011.4 g17120.t1 - 0.042 12.3 0.2 0.047 12.1 0.1 1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:899-1177 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~899-1177 DUF972 PF06156.8 g82242.t1 - 0.027 14.8 0.8 0.037 14.3 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:26494-27277 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~26494-27277 TEP1_N PF05386.6 g20960.t1 - 0.49 9.8 2.2 0.91 9 1.5 1.4 1 0 0 1 1 1 0 TEP1 N-terminal domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:138773-139015 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~138773-139015 zf-CCHC PF00098.18 g93190.t1 - 0.00013 21.7 0.8 0.00022 20.9 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:32707-33330 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~32707-33330 RraB PF06877.6 g111932.t1 - 0.026 15.1 3.7 1.3 9.6 0.4 2.1 1 1 1 2 2 2 0 Regulator of ribonuclease activity B | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:118312-118689 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~118312-118689 EF-hand_like PF09279.6 g73056.t1 - 0.021 14.8 0.3 0.023 14.7 0.2 1.2 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:153105-153359 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~153105-153359 NYD-SP28 PF14772.1 g34136.t1 - 0.000033 23.9 8.1 0.023 14.8 0.8 2.1 1 1 1 2 2 2 2 Sperm tail | Ref_seq=scaffold844_contigs=2, transcript_loc=scaffold844_contigs=2:1-527 Augustus predicted protein sequence Tobacco scaffold844_contigs=2~1-527 DASH_Hsk3 PF08227.6 g67249.t1 - 0.011 15.8 0.4 0.29 11.3 0.1 2.3 1 1 1 2 2 2 0 DASH complex subunit Hsk3 like | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:886431-887780 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~886431-887780 NPCC PF08058.6 g7599.t1 - 0.0084 15.9 0 0.015 15.1 0 1.4 1 0 0 1 1 1 1 Nuclear pore complex component | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:430536-431132 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~430536-431132 MHCassoc_trimer PF08831.5 g23733.t1 - 0.11 12.3 0.3 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:538443-538691 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~538443-538691 Strep_his_triad PF04270.8 g35189.t1 - 0.13 11.9 0.1 0.24 11.1 0 1.4 1 0 0 1 1 1 0 Streptococcal histidine triad protein | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:175265-175600 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~175265-175600 DUF3504 PF12012.3 g45470.t1 - 1.2 8.8 4.9 0.46 10.2 0.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3504) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:496685-497729 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~496685-497729 SRR1 PF07985.7 g114055.t1 - 0.076 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 SRR1 | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:160627-162284 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~160627-162284 NPIP PF06409.6 g87970.t1 - 0.12 11.1 1.7 0.13 10.9 1.2 1.1 1 0 0 1 1 1 0 Nuclear pore complex interacting protein (NPIP) | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:53191-53508 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~53191-53508 Cmyb_C PF09316.5 g80827.t1 - 5.6 6.6 8.7 98 2.5 6 2.2 1 1 0 1 1 1 0 C-myb, C-terminal | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:123217-123829 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~123217-123829 DUF1914 PF08932.5 g53482.t1 - 0.0058 16.6 0.1 0.0091 16 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1914) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:427228-427619 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~427228-427619 SPR1 PF15356.1 g49765.t1 - 0.41 11 5.7 0.51 10.6 3.9 1.1 1 0 0 1 1 1 0 Psoriasis susceptibility locus 2 | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:101784-102787 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~101784-102787 S_100 PF01023.14 g126734.t1 - 0.12 11.6 0 0.18 11.1 0 1.3 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:56204-56437 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~56204-56437 Plasmod_Pvs28 PF06247.6 g24932.t1 - 0.019 14.5 0.3 0.033 13.7 0.2 1.3 1 0 0 1 1 1 0 Plasmodium ookinete surface protein Pvs28 | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:41173-41856 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~41173-41856 PGG PF13962.1 g31338.t1 - 0.034 13.7 1.7 0.27 10.8 0.5 2.3 2 1 1 3 3 3 0 Domain of unknown function | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:283352-283858 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~283352-283858 DUF4588 PF15251.1 g111729.t1 - 0.038 13.9 0 0.062 13.2 0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4588) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:67908-68473 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~67908-68473 DUF1524 PF07510.6 g68817.t1 - 0.083 12.7 0 0.089 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) | Ref_seq=scaffold1481_contigs=2, transcript_loc=scaffold1481_contigs=2:5156-5452 Augustus predicted protein sequence Tobacco scaffold1481_contigs=2~5156-5452 DUF1011 PF06237.7 g47291.t1 - 0.064 13.1 0.7 0.094 12.6 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1011) | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:12423-12950 Augustus predicted protein sequence Tobacco scaffold1092_contigs=11~12423-12950 Fst_toxin PF13955.1 g68195.t1 - 0.49 10.1 2.6 0.95 9.2 1.8 1.5 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:334709-335567 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~334709-335567 Ribosomal_S30AE PF02482.14 g109167.t1 - 0.21 12 3.5 0.27 11.7 2.4 1.2 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:170299-170616 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~170299-170616 Rap1_C PF11626.3 g119072.t1 - 0.0055 16.5 0 0.006 16.4 0 1.2 1 0 0 1 1 1 1 TRF2-interacting telomeric protein/Rap1 - C terminal domain | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:898951-899250 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~898951-899250 FAR1 PF03101.10 g42961.t1 - 0.00000025 31.1 1 0.0000054 26.8 0.1 2.2 1 1 1 2 2 2 1 FAR1 DNA-binding domain | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:34318-35013 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~34318-35013 CAF-1_p150 PF11600.3 g82202.t1 - 7.5 5.8 39.3 8.2 5.7 27.2 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:69974-70192 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~69974-70192 DUF3584 PF12128.3 g22803.t1 - 0.0014 16.1 0.4 0.0016 15.9 0.3 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:389764-390306 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~389764-390306 WEMBL PF05701.6 g42540.t1 - 0.000083 21.2 5.4 0.000083 21.2 3.8 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:29432-29937 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~29432-29937 FadA PF09403.5 g106547.t1 - 0.083 12.9 0.2 0.1 12.6 0.1 1.1 1 0 0 1 1 1 0 Adhesion protein FadA | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:58763-59119 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~58763-59119 Apolipoprotein PF01442.13 g77957.t1 - 0.0004 19.9 11.9 0.00065 19.2 7.9 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:100865-101467 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~100865-101467 DASH_Ask1 PF08655.5 g107875.t1 - 0.088 12.6 0 0.18 11.6 0 1.4 1 0 0 1 1 1 0 DASH complex subunit Ask1 | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:400707-402662 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~400707-402662 CaM-KIIN PF15170.1 g11144.t1 - 0.3 11.1 2.2 8 6.5 0 2.8 1 1 2 3 3 3 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:222093-222440 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~222093-222440 Milton PF12448.3 g34171.t1 - 0.035 14.2 1.7 0.043 14 1.2 1.3 1 0 0 1 1 1 0 Kinesin associated protein | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:139427-140520 Augustus predicted protein sequence Tobacco scaffold846_contigs=10~139427-140520 PBP1_TM PF14812.1 g85033.t1 - 0.0049 17.1 3.2 0.0076 16.5 2.2 1.3 1 0 0 1 1 1 1 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:68431-68852 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~68431-68852 Lectin_N PF03954.9 g51703.t1 - 0.094 12.1 0.5 12 5.2 0 2.2 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:11520-13289 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~11520-13289 DUF977 PF06163.6 g71014.t1 - 0.12 12 0 0.15 11.8 0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:311493-311762 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~311493-311762 HTH_30 PF13556.1 g90859.t1 - 0.023 14.2 0.1 0.056 13 0.1 1.6 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:2930-3364 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~2930-3364 DUF4316 PF14195.1 g29900.t1 - 0.12 12.4 0 0.21 11.6 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4316) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:367058-368172 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~367058-368172 ATHILA PF03078.10 g71737.t1 - 0.00012 20.8 0 0.00014 20.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:17698-18180 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~17698-18180 Remorin_N PF03766.8 g20403.t1 - 0.076 12.7 0.5 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:219644-219919 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~219644-219919 Peptidase_S49_N PF08496.5 g74886.t1 - 0.028 14.2 0.3 0.04 13.7 0.2 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:291821-293152 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~291821-293152 Stress-antifung PF01657.12 g72673.t1 - 0.000048 23.6 0.1 0.000098 22.6 0.1 1.5 1 0 0 1 1 1 1 Salt stress response/antifungal | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:376430-382055 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~376430-382055 ATHILA PF03078.10 g92669.t1 - 0.00019 20.1 0 0.00027 19.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:261984-262972 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~261984-262972 DUF4652 PF15525.1 g15527.t1 - 0.22 10.9 2.2 0.23 10.8 1.5 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4652) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:526526-526756 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~526526-526756 ATP_sub_h PF10775.4 g42183.t1 - 0.14 11.9 2.2 0.34 10.6 0.6 2.5 1 1 1 2 2 2 0 ATP synthase complex subunit h | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:39155-40673 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~39155-40673 UL73_N PF12522.3 g105526.t1 - 0.3 10.6 4.5 0.57 9.7 3.1 1.4 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein N terminal | Ref_seq=scaffold2356_contigs=4, transcript_loc=scaffold2356_contigs=4:18821-19084 Augustus predicted protein sequence Tobacco scaffold2356_contigs=4~18821-19084 DUF2969 PF11184.3 g64217.t1 - 0.097 12.7 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2969) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:152519-152782 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~152519-152782 Toxin_39 PF15500.1 g114646.t1 - 0.12 12.4 0 0.25 11.5 0 1.5 1 1 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:145969-146298 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~145969-146298 Big_2 PF02368.13 g25474.t1 - 0.0059 16.4 0.6 0.0082 16 0.4 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 2) | Ref_seq=scaffold697_contigs=1, transcript_loc=scaffold697_contigs=1:14741-15073 Augustus predicted protein sequence Tobacco scaffold697_contigs=1~14741-15073 Chlam_PMP PF02415.12 g10358.t1 - 0.28 11.5 2.2 0.78 10.1 0.3 2.5 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:186774-187106 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~186774-187106 Shisa PF13908.1 g49241.t1 - 0.39 10.8 2 0.43 10.7 1.4 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:123315-123614 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~123315-123614 DUF1003 PF06210.6 g83834.t1 - 0.0048 16.8 0.5 0.0066 16.3 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1003) | Ref_seq=scaffold1806_contigs=1, transcript_loc=scaffold1806_contigs=1:12134-12517 Augustus predicted protein sequence Tobacco scaffold1806_contigs=1~12134-12517 DUF2617 PF10936.3 g113943.t1 - 0.049 13.1 0 0.06 12.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF2617 | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:787404-787772 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~787404-787772 P53_TAD PF08563.6 g53112.t1 - 0.12 11.3 0.1 0.25 10.4 0.1 1.4 1 0 0 1 1 1 0 P53 transactivation motif | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:63239-64325 Augustus predicted protein sequence Tobacco scaffold1184_contigs=2~63239-64325 YdjO PF14169.1 g92788.t1 - 0.025 14 0.2 0.04 13.3 0.2 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:200268-201508 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~200268-201508 ZZ PF00569.12 g122304.t1 - 2.4 7.7 8.4 5.2 6.6 0.3 2.6 1 1 1 2 2 2 0 Zinc finger, ZZ type | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:92087-92551 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~92087-92551 DUF3797 PF12677.2 g121589.t1 - 0.066 12.8 0.8 0.12 11.9 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) | Ref_seq=scaffold2734_contigs=11, transcript_loc=scaffold2734_contigs=11:170288-171305 Augustus predicted protein sequence Tobacco scaffold2734_contigs=11~170288-171305 DUF1719 PF08224.6 g95908.t1 - 0.023 13.8 0.4 0.024 13.7 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:336922-337155 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~336922-337155 Med21 PF11221.3 g109813.t1 - 0.14 12.1 1.8 0.18 11.7 1.2 1.1 1 0 0 1 1 1 0 Subunit 21 of Mediator complex | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:220819-221169 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~220819-221169 CENP-B_dimeris PF09026.5 g20392.t1 - 0.00016 21.8 4 0.00023 21.3 2.7 1.2 1 0 0 1 1 1 1 Centromere protein B dimerisation domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:196811-197331 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~196811-197331 DUF4415 PF14384.1 g72056.t1 - 0.066 13.3 0 0.11 12.7 0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4415) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:196431-196697 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~196431-196697 T_cell_tran_alt PF15128.1 g30533.t1 - 0.013 14.9 0 0.019 14.4 0 1.3 1 0 0 1 1 1 0 T-cell leukemia translocation-altered | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1121435-1122010 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1121435-1122010 DBD_Tnp_Mut PF03108.10 g60100.t1 - 3.1E-010 39.4 0.1 5.1E-010 38.7 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:836-1114 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~836-1114 TEX19 PF15553.1 g56102.t1 - 0.026 14.3 0.2 0.035 13.9 0.1 1.2 1 0 0 1 1 1 0 Testis-expressed protein 19 | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:67241-67815 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~67241-67815 CRT10 PF08728.5 g83178.t1 - 0.25 9.2 0.7 0.36 8.7 0.3 1.4 1 1 1 2 2 2 0 CRT10 | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:256266-256523 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~256266-256523 SR-25 PF10500.4 g35016.t1 - 0.84 9 8.5 1 8.7 5.9 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold864_contigs=13, transcript_loc=scaffold864_contigs=13:324944-326221 Augustus predicted protein sequence Tobacco scaffold864_contigs=13~324944-326221 Lzipper-MIP1 PF14389.1 g116189.t1 - 0.019 15 0.3 0.047 13.7 0.1 1.7 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:81992-82805 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~81992-82805 DUF977 PF06163.6 g68685.t1 - 0.082 12.6 0.1 0.097 12.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:814955-815248 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~814955-815248 zf-CCHC PF00098.18 g110281.t1 - 0.000086 22.2 0.7 0.00017 21.3 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:135070-135993 Augustus predicted protein sequence Tobacco scaffold2538_contigs=14~135070-135993 TonB_C PF03544.9 g114682.t1 - 0.0074 16.4 0.1 0.13 12.5 0.1 1.9 1 1 1 2 2 2 2 Gram-negative bacterial TonB protein C-terminal | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:194203-195606 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~194203-195606 RR_TM4-6 PF06459.7 g120786.t1 - 0.096 12.5 4.2 0.12 12.2 2.9 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:143855-144334 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~143855-144334 PRCC PF10253.4 g19253.t1 - 0.12 13 7.3 0.25 12 0.1 2.3 2 0 0 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:90163-90979 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~90163-90979 DUF3772 PF12607.3 g74069.t1 - 0.11 12.1 0.4 0.18 11.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3772) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:482512-483288 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~482512-483288 YhjQ PF06564.7 g114593.t1 - 0.071 12.4 0.1 0.086 12.1 0.1 1.1 1 0 0 1 1 1 0 YhjQ protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:26641-27024 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~26641-27024 P22_AR_N PF10547.4 g110234.t1 - 0.034 13.9 0.2 0.068 12.9 0.1 1.5 1 0 0 1 1 1 0 P22_AR N-terminal domain | Ref_seq=scaffold2537_contigs=5, transcript_loc=scaffold2537_contigs=5:11829-12475 Augustus predicted protein sequence Tobacco scaffold2537_contigs=5~11829-12475 PhnH PF05845.7 g62960.t1 - 0.081 12.3 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnH) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:102674-103785 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~102674-103785 HTH_Tnp_4 PF13613.1 g9883.t1 - 0.14 11.7 0.2 13 5.3 0 2.4 1 1 1 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:254753-255252 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~254753-255252 EF-hand_like PF09279.6 g72816.t1 - 0.067 13.2 0.1 0.11 12.5 0.1 1.4 1 1 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1521_contigs=7, transcript_loc=scaffold1521_contigs=7:51512-51853 Augustus predicted protein sequence Tobacco scaffold1521_contigs=7~51512-51853 Spc7 PF08317.6 g76168.t1 - 0.00096 17.9 7.8 0.0012 17.5 5.4 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:151902-152561 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~151902-152561 Delta_lysin PF05372.6 g110177.t1 - 0.074 12.4 0 0.13 11.6 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold2529_contigs=8, transcript_loc=scaffold2529_contigs=8:751-1644 Augustus predicted protein sequence Tobacco scaffold2529_contigs=8~751-1644 hNIFK_binding PF12196.3 g64991.t1 - 0.18 11.2 0.9 0.49 9.8 0.6 1.8 1 1 0 1 1 1 0 FHA Ki67 binding domain of hNIFK | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:163721-163981 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~163721-163981 DUF4552 PF15089.1 g2154.t1 - 0.099 11.5 0 0.11 11.3 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4552) | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:89249-89849 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~89249-89849 Antigen_Bd37 PF11641.3 g36793.t1 - 0.053 12.7 5.7 0.058 12.6 3.6 1.2 1 1 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold900_contigs=1, transcript_loc=scaffold900_contigs=1:3952-4359 Augustus predicted protein sequence Tobacco scaffold900_contigs=1~3952-4359 BRK PF07533.11 g89951.t1 - 0.12 11.9 0 0.17 11.3 0 1.3 1 0 0 1 1 1 0 BRK domain | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:104172-104450 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~104172-104450 DUF3420 PF11900.3 g74140.t1 - 0.066 13.3 0 0.11 12.5 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3420) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:608811-610036 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~608811-610036 DUF3600 PF12207.3 g78887.t1 - 0.12 11.9 0 0.12 11.8 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3600) | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:188147-188374 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~188147-188374 Prp19 PF08606.6 g50189.t1 - 0.059 13.1 0.1 0.079 12.6 0.1 1.2 1 0 0 1 1 1 0 Prp19/Pso4-like | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:98180-98548 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~98180-98548 Peptidase_C48 PF02902.14 g86137.t1 - 0.032 13.8 2.9 0.047 13.3 2 1.3 1 0 0 1 1 1 0 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:269432-270900 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~269432-270900 DUF1989 PF09347.5 g55717.t1 - 0.11 11.9 0.1 0.16 11.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1989) | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:293805-294257 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~293805-294257 Acatn PF13000.2 g47645.t1 - 0.091 11.2 0 0.095 11.1 0 1.2 1 0 0 1 1 1 0 Acetyl-coenzyme A transporter 1 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:425467-425781 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~425467-425781 DBD_Tnp_Mut PF03108.10 g37110.t1 - 0.0019 17.7 0.2 0.0043 16.6 0.1 1.7 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:158966-159340 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~158966-159340 Toxin_39 PF15500.1 g42156.t1 - 0.14 12.3 0.2 0.19 11.8 0.1 1.4 1 1 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:169570-169975 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~169570-169975 Mto2_bdg PF12808.2 g73947.t1 - 0.025 14.7 0.5 0.037 14.1 0.3 1.4 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:262911-263144 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~262911-263144 DUF3219 PF11514.3 g24248.t1 - 0.13 12.2 0 0.17 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3219) | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:316325-317285 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~316325-317285 SHD1 PF03983.7 g18207.t1 - 0.016 14.8 0 0.022 14.3 0 1.4 1 0 0 1 1 1 0 SLA1 homology domain 1, SHD1 | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:106237-106446 Augustus predicted protein sequence Tobacco scaffold547_contigs=4~106237-106446 DUF3196 PF11428.3 g100798.t1 - 0.073 12.3 0.9 0.089 12 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3196) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:23508-23798 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~23508-23798 ATHILA PF03078.10 g60239.t1 - 1.9E-009 36.6 0.2 2.2E-009 36.4 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:17762-18169 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~17762-18169 NADH_B2 PF14813.1 g128559.t1 - 0.0092 15.6 0 1.3 8.7 0 2.4 2 0 0 2 2 2 2 NADH dehydrogenase 1 beta subcomplex subunit 2 | Ref_seq=scaffold2875_contigs=1, transcript_loc=scaffold2875_contigs=1:29795-31635 Augustus predicted protein sequence Tobacco scaffold2875_contigs=1~29795-31635 DUF3292 PF11696.3 g101977.t1 - 1.6 6.5 5 2.7 5.7 3.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3292) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:227241-227642 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~227241-227642 DUF2016 PF09436.5 g24511.t1 - 1.8 8.1 3.6 11 5.6 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2016) | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:144956-145796 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~144956-145796 CFC PF09443.5 g85612.t1 - 0.14 11.8 4.2 0.24 11 2.9 1.4 1 0 0 1 1 1 0 Cripto_Frl-1_Cryptic (CFC) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:172215-172457 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~172215-172457 FlaC_arch PF05377.6 g39780.t1 - 0.088 12.7 1.2 0.31 10.9 0.3 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:218251-218712 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~218251-218712 APC_crr PF05923.7 g44897.t1 - 0.038 13.6 1.5 0.078 12.6 1.1 1.5 1 0 0 1 1 1 0 APC cysteine-rich region | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:148358-149520 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~148358-149520 C1_1 PF00130.17 g4321.t1 - 0.0096 15.6 0.4 0.0096 15.6 0.2 2.3 2 1 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:103608-103943 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~103608-103943 Trypan_PARP PF05887.6 g76337.t1 - 1.8 8.3 10.2 3.1 7.5 7.1 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:228452-230140 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~228452-230140 RP-C_C PF11800.3 g69761.t1 - 0.036 13.7 0.8 0.036 13.7 0.5 1.4 2 0 0 2 2 2 0 Replication protein C C-terminal region | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:86583-86990 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~86583-86990 MogR_DNAbind PF12181.3 g7860.t1 - 0.026 14.2 0.4 0.03 14 0.3 1.1 1 0 0 1 1 1 0 DNA binding domain of the motility gene repressor (MogR) | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:88852-89247 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~88852-89247 DUF2935 PF11155.3 g26952.t1 - 0.02 14.9 0 0.038 14 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2935) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:588995-589528 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~588995-589528 ERM PF00769.14 g92970.t1 - 0.0037 16.8 0.4 0.0037 16.8 0.3 1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:369600-370800 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~369600-370800 Trigger_C PF05698.9 g41681.t1 - 0.065 13 0.4 0.086 12.6 0.3 1.1 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:197128-197526 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~197128-197526 Takusan PF04822.8 g32433.t1 - 0.55 10 3.2 0.42 10.4 0.2 2 2 0 0 2 2 2 0 Takusan | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:131039-133895 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~131039-133895 RVT_3 PF13456.1 g78704.t1 - 2.9E-010 39.8 0 3.3E-010 39.6 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:7761-8045 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~7761-8045 SOR_SNZ PF01680.12 g119053.t1 - 0.13 11.8 0.2 0.28 10.7 0.1 1.5 1 1 1 2 2 2 0 SOR/SNZ family | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:860210-860629 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~860210-860629 TCL1_MTCP1 PF01840.12 g103678.t1 - 0.066 12.7 0 0.081 12.4 0 1.1 1 0 0 1 1 1 0 TCL1/MTCP1 family | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:32021-32405 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~32021-32405 DUF2917 PF11142.3 g9371.t1 - 0.27 10.4 3.5 4.9 6.4 2.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2917) | Ref_seq=scaffold359_contigs=5, transcript_loc=scaffold359_contigs=5:131906-132271 Augustus predicted protein sequence Tobacco scaffold359_contigs=5~131906-132271 PROL5-SMR PF15621.1 g39647.t1 - 0.25 11.8 4.3 0.29 11.5 3 1.2 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold959_contigs=1, transcript_loc=scaffold959_contigs=1:58951-59199 Augustus predicted protein sequence Tobacco scaffold959_contigs=1~58951-59199 DUF364 PF04016.7 g93051.t1 - 0.032 13.5 0.1 0.04 13.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF364) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:594070-594621 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~594070-594621 SMN PF06003.7 g12984.t1 - 1.6 7.8 6.5 2.4 7.1 4.5 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:77375-78031 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~77375-78031 bZIP_1 PF00170.16 g20312.t1 - 0.6 10.1 4.4 3.3 7.7 0.5 2.7 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:11314-12120 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~11314-12120 Myosin_tail_1 PF01576.14 g66042.t1 - 0.028 12.1 1.2 0.034 11.8 0.9 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:211483-212223 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~211483-212223 Myc_target_1 PF15179.1 g110946.t1 - 0.11 12 2.4 0.13 11.8 1.7 1.2 1 0 0 1 1 1 0 Myc target protein 1 | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:4994-5380 Augustus predicted protein sequence Tobacco scaffold2571_contigs=16~4994-5380 BaffR-Tall_bind PF09256.5 g23979.t1 - 0.037 13.6 0 11 5.6 0 2.3 2 0 0 2 2 2 0 BAFF-R, TALL-1 binding | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:39620-40273 Augustus predicted protein sequence Tobacco scaffold656_contigs=9~39620-40273 CENP-F_leu_zip PF10473.4 g122065.t1 - 0.0013 18.5 1.4 0.0019 18 1 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:140466-143914 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~140466-143914 FBD PF08387.5 g78271.t1 - 1.1E-013 50.4 0.5 0.0000002 30.3 0 2.4 2 0 0 2 2 2 2 FBD | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:143917-147615 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~143917-147615 DUF2079 PF09852.4 g45959.t1 - 0.023 13.4 0.2 0.024 13.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:118825-119121 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~118825-119121 U1snRNP70_N PF12220.3 g80876.t1 - 0.13 12.6 0 0.2 12 0 1.3 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:220424-221304 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~220424-221304 Baculo_PEP_C PF04513.7 g493.t1 - 0.039 13.7 0.4 0.039 13.7 0.3 1.8 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:33178-33743 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~33178-33743 zf-CCHC PF00098.18 g116087.t1 - 0.0002 21.1 0.8 0.00037 20.2 0.6 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:614750-615739 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~614750-615739 bZIP_1 PF00170.16 g5891.t1 - 0.021 14.7 4.7 0.14 12.1 0.5 2.5 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold284_contigs=1, transcript_loc=scaffold284_contigs=1:53093-53873 Augustus predicted protein sequence Tobacco scaffold284_contigs=1~53093-53873 ATHILA PF03078.10 g65136.t1 - 0.0000043 25.5 0 0.0000055 25.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:131128-132068 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~131128-132068 WSN PF02206.13 g110709.t1 - 0.13 11.9 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:292645-293075 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~292645-293075 Neuropep_like PF15161.1 g42592.t1 - 0.016 14.6 0.2 0.11 11.9 0.1 2.1 1 1 1 2 2 2 0 Neuropeptide-like | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:125155-126107 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~125155-126107 SUZ PF12752.2 g45599.t1 - 0.49 10.9 4.8 6.8 7.2 0.1 2.4 1 1 1 2 2 2 0 SUZ domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:204773-205108 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~204773-205108 IFP_35_N PF07334.8 g51572.t1 - 0.0052 16.7 0.2 0.0087 16 0.2 1.5 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:192453-192776 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~192453-192776 TraT PF05818.7 g76018.t1 - 0.16 11.3 0 0.19 11.1 0 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:27526-27903 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~27526-27903 WRW PF10206.4 g70039.t1 - 0.03 14.3 0 0.033 14.2 0 1.1 1 0 0 1 1 1 0 Mitochondrial F1F0-ATP synthase, subunit f | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:129741-129992 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~129741-129992 Viral_Rep PF02407.11 g85119.t1 - 0.12 12.4 0.1 0.15 12 0.1 1.1 1 0 0 1 1 1 0 Putative viral replication protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:276511-276741 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~276511-276741 DnaA_N PF11638.3 g89979.t1 - 0.0056 16.2 0 0.011 15.2 0 1.5 1 0 0 1 1 1 1 DnaA N-terminal domain | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:169839-170690 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~169839-170690 Molybdop_Fe4S4 PF04879.11 g68383.t1 - 0.28 11 2.1 7.4 6.4 0 2.9 2 1 1 3 3 3 0 Molybdopterin oxidoreductase Fe4S4 domain | Ref_seq=scaffold1475_contigs=1, transcript_loc=scaffold1475_contigs=1:3993-4340 Augustus predicted protein sequence Tobacco scaffold1475_contigs=1~3993-4340 DUF3529 PF12046.3 g26497.t1 - 0.13 11.2 0 0.18 10.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:189225-189533 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~189225-189533 KRTAP PF11759.3 g104318.t1 - 0.056 13.7 2 0.081 13.1 1.4 1.2 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:495440-495709 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~495440-495709 CENP-T PF15511.1 g116746.t1 - 4.4 6.4 10.5 5 6.2 7.3 1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:83203-83433 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~83203-83433 TYA PF01021.14 g30456.t1 - 0.0081 16.3 1 0.011 15.9 0.7 1.2 1 0 0 1 1 1 1 TYA transposon protein | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:845689-846183 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~845689-846183 Spc7_C2 PF15577.1 g23447.t1 - 0.023 14.3 1.2 0.039 13.5 0.5 1.6 1 1 0 1 1 1 0 Spc7_C2 | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:81038-81511 Augustus predicted protein sequence Tobacco scaffold645_contigs=7~81038-81511 CPSase_L_D3 PF02787.14 g38868.t1 - 0.15 11.8 0.2 0.42 10.3 0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:102963-104099 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~102963-104099 DUF3436 PF11918.3 g15808.t1 - 0.14 12.4 0.4 2 8.7 0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3436) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:345544-346512 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~345544-346512 Imm44 PF15584.1 g62058.t1 - 0.14 12 0 0.15 11.9 0 1.1 1 0 0 1 1 1 0 Immunity protein 44 | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:271360-271704 Augustus predicted protein sequence Tobacco scaffold1345_contigs=14~271360-271704 zf-CCHC_4 PF14392.1 g121789.t1 - 0.64 9.7 4.8 0.72 9.5 2.4 1.8 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:350111-351518 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~350111-351518 Cucumo_2B PF03263.8 g55781.t1 - 0.033 14.4 3.7 0.045 14 2.6 1.2 1 0 0 1 1 1 0 Cucumovirus protein 2B | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:125018-125293 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~125018-125293 TSP_1 PF00090.14 g55274.t1 - 0.13 12.3 0.1 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 Thrombospondin type 1 domain | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:327940-329028 Augustus predicted protein sequence Tobacco scaffold1216_contigs=10~327940-329028 DUF1777 PF08648.7 g63645.t1 - 1.5 8.4 4.4 2.1 8 3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1777) | Ref_seq=scaffold1379_contigs=3, transcript_loc=scaffold1379_contigs=3:18243-19169 Augustus predicted protein sequence Tobacco scaffold1379_contigs=3~18243-19169 DUF1347 PF07079.6 g41987.t1 - 0.03 12.5 0 0.038 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold998_contigs=1, transcript_loc=scaffold998_contigs=1:2493-3065 Augustus predicted protein sequence Tobacco scaffold998_contigs=1~2493-3065 TIM21 PF08294.6 g44491.t1 - 0.063 12.9 2.4 0.18 11.4 0.1 2.5 2 1 0 2 2 2 0 TIM21 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:228145-228684 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~228145-228684 Retrotrans_gag PF03732.12 g125781.t1 - 0.0072 16.3 0 0.01 15.8 0 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:124906-125785 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~124906-125785 ATHILA PF03078.10 g50453.t1 - 0.00066 18.3 0 0.0014 17.2 0 1.6 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1140_contigs=2, transcript_loc=scaffold1140_contigs=2:12362-13600 Augustus predicted protein sequence Tobacco scaffold1140_contigs=2~12362-13600 Lectin_N PF03954.9 g123873.t1 - 0.04 13.3 0 0.06 12.7 0 1.2 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:787985-788627 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~787985-788627 Antigen_Bd37 PF11641.3 g125297.t1 - 0.024 13.9 4.4 0.029 13.6 2.8 1.3 1 1 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold2771_contigs=1, transcript_loc=scaffold2771_contigs=1:64655-65179 Augustus predicted protein sequence Tobacco scaffold2771_contigs=1~64655-65179 Macoilin PF09726.4 g118027.t1 - 0.21 9.8 2.1 0.24 9.6 1.5 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:69460-69909 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~69460-69909 DUF3122 PF11320.3 g85960.t1 - 0.049 13.5 0 0.06 13.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:241242-241547 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~241242-241547 NAM-associated PF14303.1 g1031.t1 - 0.0012 19.1 5.1 0.0018 18.5 3.6 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:123730-124173 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~123730-124173 Snurportin1 PF11538.3 g98104.t1 - 0.17 11.6 1.8 0.33 10.7 1.2 1.5 1 1 0 1 1 1 0 Snurportin1 | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:138658-138906 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~138658-138906 DUF605 PF04652.11 g81169.t1 - 5.1 6.3 5.9 6 6.1 4.1 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:100985-101775 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~100985-101775 DUF3363 PF11843.3 g49894.t1 - 0.0089 14.7 3.6 0.0097 14.5 2.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:324268-324741 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~324268-324741 SAF_2 PF13144.1 g99562.t1 - 0.082 12.3 0.2 0.092 12.2 0.2 1 1 0 0 1 1 1 0 SAF-like | Ref_seq=scaffold2174_contigs=11, transcript_loc=scaffold2174_contigs=11:117773-120263 Augustus predicted protein sequence Tobacco scaffold2174_contigs=11~117773-120263 DUF1198 PF06711.6 g127854.t1 - 0.026 14.3 0.3 0.027 14.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:51502-51894 Augustus predicted protein sequence Tobacco scaffold2839_contigs=1~51502-51894 Pentapeptide_3 PF13576.1 g127955.t1 - 0.036 13.9 0 0.12 12.3 0 1.8 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold2844_contigs=1, transcript_loc=scaffold2844_contigs=1:553-852 Augustus predicted protein sequence Tobacco scaffold2844_contigs=1~553-852 HTH_25 PF13413.1 g21337.t1 - 0.0084 15.7 0.1 0.013 15 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:149751-150179 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~149751-150179 SSPI PF14098.1 g129740.t1 - 0.014 15.2 0 6.9 6.6 0 2.2 2 0 0 2 2 2 0 Small, acid-soluble spore protein I | Ref_seq=scaffold3042_contigs=1, transcript_loc=scaffold3042_contigs=1:1337-1869 Augustus predicted protein sequence Tobacco scaffold3042_contigs=1~1337-1869 DUF2743 PF10899.3 g120099.t1 - 0.12 11.7 0.7 0.13 11.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:36256-36459 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~36256-36459 DUF2370 PF10176.4 g39269.t1 - 1.6 8 4.6 2.6 7.3 3.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:263281-264679 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~263281-264679 DUF604 PF04646.7 g89658.t1 - 0.063 12.4 0 0.075 12.2 0 1 1 0 0 1 1 1 0 Protein of unknown function, DUF604 | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:62157-62558 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~62157-62558 IFT43 PF15305.1 g119635.t1 - 0.022 14.7 0.7 0.033 14.1 0.1 1.5 2 0 0 2 2 2 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:123626-123985 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~123626-123985 2OG-FeII_Oxy_5 PF13759.1 g46880.t1 - 0.096 12.9 0 0.36 11.1 0 1.8 2 0 0 2 2 2 0 Putative 2OG-Fe(II) oxygenase | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:24959-25369 Augustus predicted protein sequence Tobacco scaffold1081_contigs=4~24959-25369 UBN2 PF14223.1 g126478.t1 - 0.035 13.8 0.2 0.13 12 0 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2796_contigs=1, transcript_loc=scaffold2796_contigs=1:789-1744 Augustus predicted protein sequence Tobacco scaffold2796_contigs=1~789-1744 Myb_DNA-bind_3 PF12776.2 g80327.t1 - 0.057 14 0 0.068 13.8 0 1.1 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:73887-74144 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~73887-74144 UPF0547 PF10571.4 g26898.t1 - 0.029 14 0.1 0.064 12.9 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:484325-487328 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~484325-487328 DUF3632 PF12311.3 g115506.t1 - 0.032 14 0.5 0.041 13.6 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3632) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:527340-528228 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~527340-528228 Nodulin_late PF07127.6 g87121.t1 - 0.0000037 26.9 16.3 0.0022 18.1 1.5 2.2 2 0 0 2 2 2 2 Late nodulin protein | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:109139-111473 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~109139-111473 FerB PF08150.7 g74222.t1 - 0.044 13.8 0 0.22 11.5 0 1.8 2 0 0 2 2 2 0 FerB (NUC096) domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:798905-799252 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~798905-799252 DHC_N1 PF08385.7 g109258.t1 - 0.044 12.1 0 0.058 11.7 0 1.2 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:14933-15541 Augustus predicted protein sequence Tobacco scaffold2491_contigs=9~14933-15541 TRAPPC9-Trs120 PF08626.6 g34215.t1 - 0.087 10.1 0 0.089 10.1 0 1 1 0 0 1 1 1 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:45080-45826 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~45080-45826 RVT_3 PF13456.1 g53490.t1 - 0.0022 17.7 0 0.82 9.4 0 2.2 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:448924-449434 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~448924-449434 UNC119_bdg PF15435.1 g761.t1 - 0.084 12.2 0 0.097 12 0 1.1 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:96485-96739 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~96485-96739 FliO PF04347.8 g32108.t1 - 0.01 15.8 0 0.021 14.8 0 1.5 1 0 0 1 1 1 0 Flagellar biosynthesis protein, FliO | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:56767-57165 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~56767-57165 HAUS-augmin3 PF14932.1 g30693.t1 - 0.14 11.3 0 0.16 11.1 0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:82610-82909 Augustus predicted protein sequence Tobacco scaffold778_contigs=11~82610-82909 Daxx PF03344.10 g112399.t1 - 0.037 12.5 6.9 0.042 12.3 4.8 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:69628-71163 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~69628-71163 zf-CCHC PF00098.18 g87345.t1 - 0.018 14.9 0.1 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:422075-422758 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~422075-422758 Retrotrans_gag PF03732.12 g66296.t1 - 0.051 13.6 0.1 0.069 13.2 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:122324-122806 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~122324-122806 bZIP_2 PF07716.10 g92281.t1 - 0.089 12.6 1.9 0.15 11.9 1.3 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:210657-211417 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~210657-211417 DUF1199 PF06712.6 g31924.t1 - 0.065 13 0.2 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:216950-217294 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~216950-217294 ATHILA PF03078.10 g3278.t1 - 0.000000067 31.5 0 0.00000063 28.3 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:174717-175447 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~174717-175447 NUT_N PF12881.2 g53539.t1 - 0.24 10.5 2 0.27 10.3 1.4 1 1 0 0 1 1 1 0 NUT protein N terminus | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:24938-25353 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~24938-25353 BTB PF00651.26 g57417.t1 - 0.11 12.5 0.1 0.16 11.9 0 1.3 1 0 0 1 1 1 0 BTB/POZ domain | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:122946-123522 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~122946-123522 RMF PF04957.7 g107250.t1 - 0.042 13.5 0.2 0.069 12.8 0.1 1.5 1 0 0 1 1 1 0 Ribosome modulation factor | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1027866-1028135 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1027866-1028135 DUF2383 PF09537.5 g101513.t1 - 0.12 12.6 0 0.21 11.8 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:194753-195466 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~194753-195466 P12 PF12669.2 g71944.t1 - 0.027 14.6 2.1 0.061 13.5 1.5 1.7 1 0 0 1 1 1 0 Virus attachment protein p12 family | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:163630-166104 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~163630-166104 Peptidase_M85 PF13678.1 g7358.t1 - 0.013 14.8 0.2 0.021 14.2 0.2 1.2 1 0 0 1 1 1 0 NFkB-p65-degrading zinc protease | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:86920-88457 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~86920-88457 Gly-rich_Ago1 PF12764.2 g49029.t1 - 0.2 12.3 1.6 0.24 12 1.1 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:1-182 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~1-182 DUF3015 PF11220.3 g114443.t1 - 0.086 12.4 0 0.12 11.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3015) | Ref_seq=scaffold2649_contigs=6, transcript_loc=scaffold2649_contigs=6:130416-130766 Augustus predicted protein sequence Tobacco scaffold2649_contigs=6~130416-130766 zf-CCHH PF10283.4 g88023.t1 - 0.00094 18.9 0 1.8 8.4 0 2.4 2 0 0 2 2 2 2 Zinc-finger (CX5CX6HX5H) motif | Ref_seq=scaffold1906_contigs=5, transcript_loc=scaffold1906_contigs=5:1955-2489 Augustus predicted protein sequence Tobacco scaffold1906_contigs=5~1955-2489 DUF3212 PF11486.3 g108038.t1 - 0.064 13 0 12 5.6 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3212) | Ref_seq=scaffold2430_contigs=3, transcript_loc=scaffold2430_contigs=3:4755-5196 Augustus predicted protein sequence Tobacco scaffold2430_contigs=3~4755-5196 Perilipin PF03036.11 g104359.t1 - 0.099 11.4 0 0.15 10.8 0 1.2 1 0 0 1 1 1 0 Perilipin family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:627416-629490 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~627416-629490 DUF1495 PF07381.6 g111812.t1 - 0.000047 22.9 0.1 32 4.2 0 4.8 4 1 1 5 5 5 0 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold2593_contigs=14, transcript_loc=scaffold2593_contigs=14:7951-11427 Augustus predicted protein sequence Tobacco scaffold2593_contigs=14~7951-11427 ATHILA PF03078.10 g98798.t1 - 0.000012 24.1 0 0.00061 18.4 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:208847-209179 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~208847-209179 DBD_Tnp_Mut PF03108.10 g51068.t1 - 0.024 14.2 0 0.039 13.5 0 1.3 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:16995-18300 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~16995-18300 DUF1822 PF08852.6 g98956.t1 - 0.018 13.8 1.6 0.02 13.7 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:96683-97211 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~96683-97211 UPF0547 PF10571.4 g109566.t1 - 0.082 12.6 0.2 0.28 10.8 0 2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:39205-40207 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~39205-40207 DUF3738 PF12543.3 g122459.t1 - 0.002 17.6 0 0.0028 17.2 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3738) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:64393-65006 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~64393-65006 CCDC-167 PF15188.1 g54071.t1 - 0.0034 17.2 4.7 0.0054 16.6 3.3 1.4 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:204050-204415 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~204050-204415 IL6Ra-bind PF09240.5 g120598.t1 - 0.066 13.3 0.1 0.092 12.9 0.1 1.2 1 0 0 1 1 1 0 Interleukin-6 receptor alpha chain, binding | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:297739-298104 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~297739-298104 GalKase_gal_bdg PF10509.4 g120508.t1 - 0.0031 16.7 0 0.0044 16.2 0 1.2 1 0 0 1 1 1 1 Galactokinase galactose-binding signature | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:95549-97101 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~95549-97101 DUF4040 PF13244.1 g48608.t1 - 0.059 13.3 0.1 0.073 13 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4040) | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1184936-1185151 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~1184936-1185151 DUF3279 PF11682.3 g85025.t1 - 0.019 14.5 0.2 0.023 14.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:44559-44831 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~44559-44831 z-alpha PF02295.12 g61562.t1 - 0.009 15.7 0.1 0.017 14.8 0.1 1.4 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:118921-119890 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~118921-119890 TetR_C_4 PF08359.6 g85118.t1 - 0.01 15.7 0 0.013 15.4 0 1.1 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:275853-276245 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~275853-276245 PPI_Ypi1 PF07491.6 g54885.t1 - 0.046 13.3 0 0.074 12.6 0 1.4 1 0 0 1 1 1 0 Protein phosphatase inhibitor | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:68087-68395 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~68087-68395 Dec-1 PF04624.9 g18092.t1 - 0.032 13.8 0.8 0.032 13.8 0.5 1.8 2 0 0 2 2 2 0 Dec-1 repeat | Ref_seq=scaffold544_contigs=3, transcript_loc=scaffold544_contigs=3:13697-14440 Augustus predicted protein sequence Tobacco scaffold544_contigs=3~13697-14440 HasA PF06438.7 g10335.t1 - 0.0031 16.9 1.2 0.0035 16.7 0.8 1 1 0 0 1 1 1 1 Heme-binding protein A (HasA) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:118165-118419 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~118165-118419 ParB PF08775.5 g31935.t1 - 3.5 7.9 9.2 1.9 8.7 1.9 2.3 1 1 1 2 2 2 0 ParB family | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:6669-7469 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~6669-7469 DUF1962 PF09227.5 g107964.t1 - 0.056 13.4 0.1 11 6.1 0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1962) | Ref_seq=scaffold2424_contigs=6, transcript_loc=scaffold2424_contigs=6:39721-41184 Augustus predicted protein sequence Tobacco scaffold2424_contigs=6~39721-41184 Daxx PF03344.10 g6140.t1 - 0.005 15.3 15.3 0.0058 15.1 10.6 1 1 0 0 1 1 1 1 Daxx Family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:117326-118265 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~117326-118265 PCI_Csn8 PF10075.4 g13630.t1 - 0.1 12.4 0 0.14 11.9 0 1.3 1 1 0 1 1 1 0 COP9 signalosome, subunit CSN8 | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:33881-34213 Augustus predicted protein sequence Tobacco scaffold451_contigs=13~33881-34213 EBV-NA3 PF05009.7 g39025.t1 - 0.14 11.3 0.7 0.15 11.2 0.5 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:274880-275107 Augustus predicted protein sequence Tobacco scaffold947_contigs=9~274880-275107 Tnp_zf-ribbon_2 PF13842.1 g18981.t1 - 6.5 7.2 7.7 8 6.9 0.5 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:11565-11879 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~11565-11879 UBN2_2 PF14227.1 g114547.t1 - 0.0074 15.8 0 0.0089 15.5 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:9131-9415 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~9131-9415 DUF2062 PF09835.4 g9575.t1 - 0.58 9.7 3.2 0.7 9.4 2.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:70657-71929 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~70657-71929 DUF1524 PF07510.6 g116706.t1 - 0.067 13 0 0.094 12.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:168909-169433 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~168909-169433 YqzE PF14038.1 g57068.t1 - 0.098 12.4 0 12 5.7 0 2.3 2 0 0 2 2 2 0 YqzE-like protein | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:174163-176173 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~174163-176173 Streptin-Immun PF11083.3 g76407.t1 - 0.000004 26.7 0 0.058 13.3 0.1 2.5 1 1 1 2 2 2 2 Lantibiotic streptin immunity protein | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:168072-168824 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~168072-168824 Tropomyosin PF00261.15 g8439.t1 - 0.001 18.2 1.3 0.001 18.2 0.9 1.7 2 0 0 2 2 2 1 Tropomyosin | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:89598-90018 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~89598-90018 APG6 PF04111.7 g23721.t1 - 0.26 10.2 4.9 0.35 9.8 3.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:501035-503993 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~501035-503993 RNF111_N PF15303.1 g47961.t1 - 0.11 12 0.4 0.15 11.5 0.3 1.1 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase Arkadia N-terminus | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:201782-202270 Augustus predicted protein sequence Tobacco scaffold1103_contigs=14~201782-202270 His_leader PF08047.6 g26233.t1 - 1.9 7.9 6.9 1.7 8.1 3.5 1.7 2 0 0 2 2 2 0 Histidine operon leader peptide | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:105146-105487 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~105146-105487 POTRA_1 PF08478.5 g45339.t1 - 0.3 11.1 2.7 13 5.9 0.2 2.4 1 1 1 2 2 2 0 POTRA domain, FtsQ-type | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:262088-262546 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~262088-262546 AAA_32 PF13654.1 g29897.t1 - 0.041 12.5 0.2 0.049 12.2 0.2 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:353799-355604 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~353799-355604 RNA_Me_trans PF04252.8 g50792.t1 - 0.12 11.7 0 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:152592-152879 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~152592-152879 TGF_beta_GS PF08515.7 g129600.t1 - 0.41 10 3.6 0.96 8.8 2.5 1.6 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold2997_contigs=1, transcript_loc=scaffold2997_contigs=1:1-187 Augustus predicted protein sequence Tobacco scaffold2997_contigs=1~1-187 G-patch_2 PF12656.2 g67965.t1 - 0.0063 16.3 0 0.009 15.8 0 1.2 1 0 0 1 1 1 1 DExH-box splicing factor binding site | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:40766-41053 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~40766-41053 DivIC PF04977.10 g19026.t1 - 0.032 13.7 5.2 0.31 10.5 0.1 2.6 2 0 0 2 2 2 0 Septum formation initiator | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:118881-120069 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~118881-120069 Spb1_C PF07780.7 g56284.t1 - 0.0025 17.3 0.3 0.0032 16.9 0.2 1.1 1 0 0 1 1 1 1 Spb1 C-terminal domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:377269-377653 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~377269-377653 DUF2664 PF10867.3 g8308.t1 - 0.012 16.2 0.4 0.014 15.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2664) | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:154460-154714 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~154460-154714 Prok-E2_A PF14457.1 g34364.t1 - 0.0094 15.4 1.1 2.9 7.3 0.1 2.1 2 0 0 2 2 2 2 Prokaryotic E2 family A | Ref_seq=scaffold852_contigs=5, transcript_loc=scaffold852_contigs=5:31532-32221 Augustus predicted protein sequence Tobacco scaffold852_contigs=5~31532-32221 Med21 PF11221.3 g112168.t1 - 0.11 12.4 0.8 0.17 11.8 0.5 1.4 1 1 0 1 1 1 0 Subunit 21 of Mediator complex | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:142204-142635 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~142204-142635 HTH_31 PF13560.1 g124349.t1 - 0.11 12.6 0.2 0.22 11.7 0.2 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1991337-1991573 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1991337-1991573 Adeno_52K PF03052.10 g42509.t1 - 0.14 11.3 0 0.17 11 0 1.1 1 0 0 1 1 1 0 Adenoviral protein L1 52/55-kDa | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:32224-35158 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~32224-35158 ATHILA PF03078.10 g49980.t1 - 0.000022 23.2 0 0.000026 23 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:479684-480070 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~479684-480070 Vir_act_alpha_C PF10400.4 g79750.t1 - 0.0062 16.8 0.3 0.0073 16.6 0.2 1.1 1 0 0 1 1 1 1 Virulence activator alpha C-term | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:70467-70688 Augustus predicted protein sequence Tobacco scaffold1702_contigs=7~70467-70688 Cupredoxin_1 PF13473.1 g66839.t1 - 0.14 12 0.3 0.22 11.4 0.2 1.3 1 1 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:100539-101007 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~100539-101007 HEV_ORF1 PF02444.11 g358.t1 - 0.16 12.1 3.4 0.47 10.6 1.5 2.2 2 1 0 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:6935-8833 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~6935-8833 FPN1 PF06963.7 g70327.t1 - 0.00022 19.7 0.2 0.00025 19.5 0.2 1 1 0 0 1 1 1 1 Ferroportin1 (FPN1) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:288390-288773 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~288390-288773 zf-CCHC PF00098.18 g8906.t1 - 0.001 18.9 0.2 0.0019 18 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:42516-43578 Augustus predicted protein sequence Tobacco scaffold346_contigs=1~42516-43578 YdjO PF14169.1 g1468.t1 - 0.024 14 1.3 0.057 12.8 0.1 2.3 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:51478-54295 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~51478-54295 Pex14_N PF04695.8 g46279.t1 - 0.53 10.3 3.2 0.78 9.7 0.2 2.2 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:189677-190577 Augustus predicted protein sequence Tobacco scaffold1064_contigs=7~189677-190577 BBS2_C PF14782.1 g12190.t1 - 0.24 9.9 5.6 0.25 9.8 3.9 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:276426-276929 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~276426-276929 GUN4 PF05419.7 g75340.t1 - 0.0035 17.1 0 0.0038 17 0 1.2 1 0 0 1 1 1 1 GUN4-like | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:192055-192264 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~192055-192264 Herpes_DNAp_acc PF04929.7 g107807.t1 - 5.1 5.9 9.7 5.4 5.8 6.7 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:149816-150106 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~149816-150106 Fib_alpha PF08702.5 g117849.t1 - 0.053 13.6 0.5 0.058 13.5 0.3 1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:117447-117716 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~117447-117716 Seryl_tRNA_N PF02403.17 g30022.t1 - 0.071 13.1 3.3 0.11 12.5 0.6 1.9 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:235098-235716 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~235098-235716 Herpes_UL73 PF03554.8 g55696.t1 - 0.025 14.3 0.6 0.036 13.8 0.4 1.3 1 0 0 1 1 1 0 UL73 viral envelope glycoprotein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:253867-254184 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~253867-254184 Peptidase_S66 PF02016.10 g42171.t1 - 0.08 11.8 0 0.084 11.8 0 1.1 1 0 0 1 1 1 0 LD-carboxypeptidase | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:3907-4397 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~3907-4397 Vps5 PF09325.5 g106516.t1 - 0.0029 16.8 2.2 0.0034 16.6 1.5 1 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:102461-102715 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~102461-102715 Tmemb_170 PF10190.4 g102703.t1 - 1.1 9.3 15.2 1.1 9.3 5.7 2.5 1 1 1 2 2 2 0 Putative transmembrane protein 170 | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:92773-96583 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~92773-96583 Dimer_Tnp_hAT PF05699.9 g14616.t1 - 0.0013 18.2 0.1 0.0019 17.7 0.1 1.2 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:120364-120879 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~120364-120879 RVT_3 PF13456.1 g117119.t1 - 0.00046 19.9 0 0.00056 19.6 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2680_contigs=8, transcript_loc=scaffold2680_contigs=8:216202-216426 Augustus predicted protein sequence Tobacco scaffold2680_contigs=8~216202-216426 CENP-B_dimeris PF09026.5 g25216.t1 - 0.0021 18.2 0.5 0.0026 17.9 0.4 1.1 1 0 0 1 1 1 1 Centromere protein B dimerisation domain | Ref_seq=scaffold690_contigs=9, transcript_loc=scaffold690_contigs=9:127789-128070 Augustus predicted protein sequence Tobacco scaffold690_contigs=9~127789-128070 YjfB_motility PF14070.1 g82467.t1 - 0.3 10.9 3.1 2.4 7.9 2.2 2.1 1 1 0 1 1 1 0 Putative motility protein | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:11171-11455 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~11171-11455 PhaG_MnhG_YufB PF03334.9 g5722.t1 - 0.14 12.2 0.2 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Na+/H+ antiporter subunit | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:310712-311127 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~310712-311127 DUF1280 PF06918.9 g28849.t1 - 0.26 10.4 1.6 0.28 10.3 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:431600-433567 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~431600-433567 CENP-R PF06729.7 g1483.t1 - 0.53 9.9 7.1 0.3 10.7 3.2 1.8 1 1 1 2 2 2 0 Kinetochore component, CENP-R | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:118086-118722 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~118086-118722 Phyto_Pns9_10 PF05878.6 g65200.t1 - 0.17 10.8 0.5 0.2 10.6 0.3 1.1 1 0 0 1 1 1 0 Phytoreovirus nonstructural protein Pns9/Pns10 | Ref_seq=scaffold1400_contigs=2, transcript_loc=scaffold1400_contigs=2:115434-116086 Augustus predicted protein sequence Tobacco scaffold1400_contigs=2~115434-116086 MARVEL PF01284.18 g89294.t1 - 0.064 13 0.5 0.27 11 0.2 1.8 2 0 0 2 2 2 0 Membrane-associating domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:244848-245144 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~244848-245144 zf-CCHC PF00098.18 g41463.t1 - 0.00008 22.3 0.7 0.00021 21 0.5 1.8 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:3379-4506 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~3379-4506 DUF1510 PF07423.6 g7107.t1 - 0.0027 17.1 11.7 0.0032 16.8 8.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:71676-72032 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~71676-72032 DUF2806 PF10987.3 g123059.t1 - 0.16 11.4 0 0.21 11 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2806) | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:51940-52329 Augustus predicted protein sequence Tobacco scaffold2753_contigs=11~51940-52329 zf-BED PF02892.10 g65639.t1 - 0.023 14.4 0.4 0.034 13.9 0.3 1.3 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:182112-182390 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~182112-182390 Tnp_P_element PF12017.3 g89260.t1 - 0.0075 15.5 2.4 0.0089 15.2 1.6 1.1 1 0 0 1 1 1 1 Transposase protein | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:168579-169101 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~168579-169101 SpoVAD PF07451.6 g32497.t1 - 0.12 10.7 0 0.13 10.7 0 1 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:262520-263008 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~262520-263008 FAM209 PF15206.1 g83449.t1 - 0.12 12.1 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 FAM209 family | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:7154-7474 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~7154-7474 TrmB PF01978.14 g35998.t1 - 0.062 13 0.1 0.099 12.3 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:51119-51905 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~51119-51905 Sedlin_N PF04628.8 g66114.t1 - 0.0046 16.8 0.2 0.0077 16 0.1 1.3 1 1 0 1 1 1 1 Sedlin, N-terminal conserved region | Ref_seq=scaffold1434_contigs=2, transcript_loc=scaffold1434_contigs=2:6859-7753 Augustus predicted protein sequence Tobacco scaffold1434_contigs=2~6859-7753 MSSP PF03940.8 g21976.t1 - 0.0042 16.4 10.8 0.0081 15.5 7.5 1.4 1 1 0 1 1 1 1 Male specific sperm protein | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:27035-27504 Augustus predicted protein sequence Tobacco scaffold607_contigs=8~27035-27504 QueC PF06508.8 g94399.t1 - 0.013 14.7 0 0.018 14.3 0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:840197-840885 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~840197-840885 Polysacc_deac_1 PF01522.16 g12068.t1 - 0.085 12.4 0.5 0.18 11.3 0.1 1.7 1 1 1 2 2 2 0 Polysaccharide deacetylase | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:362706-363149 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~362706-363149 Sensor_TM1 PF13755.1 g21796.t1 - 0.056 12.9 0 0.076 12.5 0 1.2 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:190865-191125 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~190865-191125 Flexi_CP PF00286.15 g71678.t1 - 0.15 11.7 0 17 5 0.1 2.1 2 0 0 2 2 2 0 Viral coat protein | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:251535-251999 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~251535-251999 bZIP_2 PF07716.10 g130097.t1 - 0.17 11.7 2.9 0.32 10.8 2 1.5 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold3444_contigs=1, transcript_loc=scaffold3444_contigs=1:1-248 Augustus predicted protein sequence Tobacco scaffold3444_contigs=1~1-248 DUF3778 PF12620.3 g75600.t1 - 0.012 15.1 1.8 0.012 15.1 1.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:52397-54524 Augustus predicted protein sequence Tobacco scaffold1576_contigs=4~52397-54524 DUF977 PF06163.6 g110943.t1 - 0.06 13.1 0 0.1 12.3 0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold2570_contigs=11, transcript_loc=scaffold2570_contigs=11:7783-8106 Augustus predicted protein sequence Tobacco scaffold2570_contigs=11~7783-8106 DUF2743 PF10899.3 g114115.t1 - 0.019 14.3 5.3 0.022 14.1 3.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:303516-303824 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~303516-303824 ATHILA PF03078.10 g2510.t1 - 0.00000042 28.9 0 0.00000046 28.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:152413-152691 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~152413-152691 FAM75 PF14650.1 g71347.t1 - 7.5 5.8 8 8.3 5.6 5.5 1.1 1 0 0 1 1 1 0 FAM75 family | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:568966-569438 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~568966-569438 Podovirus_Gp16 PF05894.7 g113876.t1 - 0.1 11.9 0 0.11 11.8 0 1 1 0 0 1 1 1 0 Podovirus DNA encapsidation protein (Gp16) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:625973-626200 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~625973-626200 Prolactin_RP PF15172.1 g98966.t1 - 0.14 11.3 0.9 27 4 0 3.1 3 0 0 3 3 3 0 Prolactin-releasing peptide | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:112257-112538 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~112257-112538 RHIM PF12721.2 g82896.t1 - 0.72 10.3 6.2 42 4.6 0.2 3.1 1 1 2 3 3 3 0 RIP homotypic interaction motif | Ref_seq=scaffold1776_contigs=16, transcript_loc=scaffold1776_contigs=16:24049-24426 Augustus predicted protein sequence Tobacco scaffold1776_contigs=16~24049-24426 DUF4283 PF14111.1 g103401.t1 - 0.00037 19.6 0.1 0.00046 19.3 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:397939-398184 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~397939-398184 Alpha_E3_glycop PF01563.11 g41251.t1 - 0.058 13.2 0 0.066 13 0 1.2 1 0 0 1 1 1 0 Alphavirus E3 glycoprotein | Ref_seq=scaffold986_contigs=2, transcript_loc=scaffold986_contigs=2:24417-25503 Augustus predicted protein sequence Tobacco scaffold986_contigs=2~24417-25503 DUF490 PF04357.8 g32622.t1 - 0.12 11.4 0.1 0.13 11.3 0 1 1 0 0 1 1 1 0 Family of unknown function (DUF490) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:503772-504435 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~503772-504435 zf-RING_UBOX PF13445.1 g65564.t1 - 0.0056 16.3 0.1 0.0092 15.6 0 1.4 1 0 0 1 1 1 1 RING-type zinc-finger | Ref_seq=scaffold1419_contigs=9, transcript_loc=scaffold1419_contigs=9:161744-162028 Augustus predicted protein sequence Tobacco scaffold1419_contigs=9~161744-162028 DDRGK PF09756.4 g77465.t1 - 0.54 9.6 32.5 0.61 9.4 22.5 1 1 0 0 1 1 1 0 DDRGK domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:130365-130643 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~130365-130643 DUF4201 PF13870.1 g75076.t1 - 0.044 13.2 6.6 0.036 13.5 2.2 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:105697-106434 Augustus predicted protein sequence Tobacco scaffold1566_contigs=4~105697-106434 CUE PF02845.11 g112375.t1 - 0.12 11.8 0 0.17 11.3 0 1.3 1 0 0 1 1 1 0 CUE domain | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:28242-28635 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~28242-28635 FTP PF07504.8 g112359.t1 - 0.044 13.2 0.1 0.074 12.5 0 1.3 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:182196-182546 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~182196-182546 Stathmin PF00836.14 g27838.t1 - 0.023 14.3 1.7 0.029 14 1 1.3 1 1 0 1 1 1 0 Stathmin family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:384859-385098 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~384859-385098 PsbT PF01405.12 g114592.t1 - 0.16 11.5 0.4 0.25 10.9 0.3 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre T protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:25853-26326 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~25853-26326 Rxt3 PF08642.5 g120668.t1 - 0.0077 16.4 0.2 0.013 15.7 0.1 1.4 1 0 0 1 1 1 1 Histone deacetylation protein Rxt3 | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:29932-30534 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~29932-30534 ATP-synt_E_2 PF08112.6 g45139.t1 - 0.05 13.6 0 0.06 13.4 0 1.1 1 0 0 1 1 1 0 ATP synthase epsilon subunit | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:524001-524320 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~524001-524320 FCP1_C PF09309.5 g64268.t1 - 0.13 11.5 6.3 0.13 11.5 4.4 1 1 0 0 1 1 1 0 FCP1, C-terminal | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:324257-324487 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~324257-324487 zf-CCHC PF00098.18 g63362.t1 - 0.000025 23.9 0.7 0.000039 23.3 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:47853-48173 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~47853-48173 Vac_Fusion PF02346.11 g113772.t1 - 0.12 11.8 0.6 1.6 8.2 0 2.3 2 0 0 2 2 2 0 Chordopoxvirus fusion protein | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:399930-400361 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~399930-400361 NESP55 PF06390.7 g117995.t1 - 0.25 10.6 2.3 0.43 9.9 1.5 1.4 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:8881-9315 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~8881-9315 DUF3166 PF11365.3 g28046.t1 - 0.038 14.4 4.4 0.066 13.6 3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3166) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:817273-817839 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~817273-817839 bZIP_2 PF07716.10 g113734.t1 - 0.088 12.6 2.4 0.23 11.3 1.7 1.7 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:312756-313157 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~312756-313157 DUF4589 PF15252.1 g122534.t1 - 0.0052 16.6 0.3 0.0071 16.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4589) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:194600-195031 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~194600-195031 Retrotrans_gag PF03732.12 g85089.t1 - 0.007 16.4 1.4 0.021 14.8 1 1.7 1 1 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:197417-198144 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~197417-198144 FNIP PF05725.7 g90010.t1 - 0.063 13.2 0.3 0.85 9.6 0 2.4 3 0 0 3 3 3 0 FNIP Repeat | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:229747-231641 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~229747-231641 gag_pre-integrs PF13976.1 g32541.t1 - 0.00000012 31.2 0.2 0.00000033 29.8 0.1 1.7 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:326073-328181 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~326073-328181 AgrB PF04647.10 g85944.t1 - 0.043 12.8 0.6 0.059 12.4 0.4 1.1 1 0 0 1 1 1 0 Accessory gene regulator B | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:194614-194958 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~194614-194958 DUF3245 PF11595.3 g21155.t1 - 0.005 17.1 3.6 0.008 16.4 2.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:87380-87901 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~87380-87901 ATHILA PF03078.10 g116722.t1 - 0.00000083 27.9 0 0.00000095 27.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:23469-24397 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~23469-24397 DUF295 PF03478.13 g116274.t1 - 0.06 12.7 0 0.13 11.6 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF295) | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:8291-9049 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~8291-9049 PBP_sp32 PF07222.7 g110275.t1 - 0.22 10.6 2.8 0.33 10 1.9 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:126925-127710 Augustus predicted protein sequence Tobacco scaffold2538_contigs=14~126925-127710 FH2 PF02181.18 g59270.t1 - 0.035 12.9 0 0.049 12.5 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:70145-71085 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~70145-71085 Daxx PF03344.10 g54295.t1 - 0.013 13.9 8.5 0.014 13.9 5.9 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:168873-169442 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~168873-169442 FAM198 PF15051.1 g85004.t1 - 0.096 11.3 0 0.096 11.3 0 1.2 1 0 0 1 1 1 0 FAM198 protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:10512-11797 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~10512-11797 tRNA_lig_CPD PF08302.6 g119939.t1 - 0.052 12.7 0 0.053 12.7 0 1.1 1 0 0 1 1 1 0 Fungal tRNA ligase phosphodiesterase domain | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:72040-72360 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~72040-72360 IFT43 PF15305.1 g116842.t1 - 0.92 9.5 7.3 0.26 11.2 1.5 1.9 1 1 1 2 2 2 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2677_contigs=10, transcript_loc=scaffold2677_contigs=10:5408-5821 Augustus predicted protein sequence Tobacco scaffold2677_contigs=10~5408-5821 gp32 PF08804.5 g69719.t1 - 0.14 12.2 0 0.17 12 0 1.2 1 0 0 1 1 1 0 gp32 DNA binding protein like | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:997239-997511 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~997239-997511 DUF2439 PF10382.4 g58079.t1 - 0.087 13 0 0.19 11.9 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2439) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:317129-317569 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~317129-317569 DUF72 PF01904.13 g112402.t1 - 0.052 13.2 0 0.052 13.2 0 1 1 0 0 1 1 1 0 Protein of unknown function DUF72 | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:86792-87034 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~86792-87034 CAF-1_p150 PF11600.3 g28306.t1 - 0.0055 16.1 33.1 0.0065 15.8 22.9 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:20125-20562 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~20125-20562 zf-C3HC4_4 PF15227.1 g107386.t1 - 0.019 14.8 0.2 0.026 14.3 0.1 1.3 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1258752-1258970 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1258752-1258970 DUF3669 PF12417.3 g36118.t1 - 0.0047 16.6 3.4 0.035 13.8 1.1 2.2 1 1 1 2 2 2 2 Zinc finger protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:308342-308656 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~308342-308656 DUF1510 PF07423.6 g24290.t1 - 0.67 9.2 8.4 0.81 9 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:63860-64231 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~63860-64231 DUF1604 PF07713.8 g10058.t1 - 0.019 14.7 0.6 0.026 14.3 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1604) | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:21221-21816 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~21221-21816 Dopey_N PF04118.9 g95670.t1 - 0.11 11.2 0 0.14 10.9 0 1.2 1 0 0 1 1 1 0 Dopey, N-terminal | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:55221-55972 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~55221-55972 DUF3294 PF07957.6 g108026.t1 - 0.027 14 0 0.03 13.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3294) | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:133355-133570 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~133355-133570 DUF2594 PF10769.4 g116379.t1 - 0.13 12.3 0 0.31 11.1 0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:220644-222930 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~220644-222930 Transglycosylas PF06737.9 g34079.t1 - 0.14 12.4 0 0.23 11.7 0 1.3 1 0 0 1 1 1 0 Transglycosylase-like domain | Ref_seq=scaffold843_contigs=7, transcript_loc=scaffold843_contigs=7:1227-1505 Augustus predicted protein sequence Tobacco scaffold843_contigs=7~1227-1505 Transposase_28 PF04195.7 g52067.t1 - 0.000025 23.6 0.1 0.000037 23 0.1 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:300937-301530 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~300937-301530 Med30 PF11315.3 g58524.t1 - 0.096 12.8 1.8 11 6.1 0 2.4 2 1 0 2 2 2 0 Mediator complex subunit 30 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:69517-70053 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~69517-70053 DUF3073 PF11273.3 g106867.t1 - 0.11 12.9 3.8 7.7 7.1 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:20739-22826 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~20739-22826 PetN PF03742.9 g127141.t1 - 2.7 7.6 4.5 4.1 7 3.1 1.3 1 0 0 1 1 1 0 PetN | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:53823-54038 Augustus predicted protein sequence Tobacco scaffold2814_contigs=1~53823-54038 DBC1 PF14443.1 g29818.t1 - 0.14 11.6 0.2 0.18 11.3 0.1 1.4 1 1 0 1 1 1 0 DBC1 | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:182271-182525 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~182271-182525 Viral_P18 PF04521.8 g35855.t1 - 0.048 13 0 0.048 13 0 1.2 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:645440-646330 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~645440-646330 DDE_Tnp_IS1 PF03400.8 g124957.t1 - 0.082 13 0 0.12 12.4 0 1.4 1 0 0 1 1 1 0 IS1 transposase | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:243310-243603 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~243310-243603 DUF3722 PF12519.3 g36445.t1 - 0.036 13.2 0 0.042 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3722) | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:89586-90823 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~89586-90823 NDUFA12 PF05071.11 g124584.t1 - 0.089 13.2 0 0.13 12.7 0 1.3 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase subunit NDUFA12 | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:82863-83129 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~82863-83129 Peptidase_C14 PF00656.17 g61556.t1 - 0.11 12.1 0.1 0.12 12 0.1 1.1 1 0 0 1 1 1 0 Caspase domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:112976-113254 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~112976-113254 DUF2228 PF10228.4 g10514.t1 - 0.0083 15.7 0.6 0.019 14.5 0.3 1.6 1 1 0 1 1 1 1 Uncharacterised conserved protein (DUF2228) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:174601-175242 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~174601-175242 DegS PF05384.6 g91486.t1 - 0.0028 16.8 0.9 0.0028 16.8 0.6 1.6 2 0 0 2 2 2 1 Sensor protein DegS | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:83642-84359 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~83642-84359 Glycohydro_20b2 PF14845.1 g72364.t1 - 0.11 13.1 0.1 0.12 13 0.1 1.1 1 0 0 1 1 1 0 beta-acetyl hexosaminidase like | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:909293-909526 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~909293-909526 VPEP PF07589.6 g10587.t1 - 1.4 8.9 4.5 0.3 11 0.5 1.9 2 0 0 2 2 2 0 PEP-CTERM motif | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:324704-325183 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~324704-325183 DUF2929 PF11151.3 g46074.t1 - 0.091 12.8 3.1 9.6 6.3 0.8 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2929) | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:26718-26942 Augustus predicted protein sequence Tobacco scaffold1054_contigs=13~26718-26942 Cnl2_NKP2 PF09447.5 g16808.t1 - 0.071 12.8 0.4 0.41 10.3 0.1 2.1 1 1 1 2 2 2 0 Cnl2/NKP2 family protein | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:473077-473346 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~473077-473346 zf-CCHC PF00098.18 g42281.t1 - 0.015 15.2 0.8 0.015 15.2 0.6 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:330436-330654 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~330436-330654 DUF4283 PF14111.1 g27860.t1 - 0.083 11.9 0.1 0.12 11.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:430465-430704 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~430465-430704 ATHILA PF03078.10 g73250.t1 - 6E-011 41.5 0.1 6.2E-011 41.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:68687-69133 Augustus predicted protein sequence Tobacco scaffold1535_contigs=9~68687-69133 RepB-RCR_reg PF10723.4 g86948.t1 - 0.01 15.5 0.4 0.012 15.3 0.3 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:208047-208280 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~208047-208280 SKIP_SNW PF02731.10 g95024.t1 - 0.12 11.8 0.6 0.14 11.5 0.4 1.1 1 0 0 1 1 1 0 SKIP/SNW domain | Ref_seq=scaffold2052_contigs=6, transcript_loc=scaffold2052_contigs=6:29987-30253 Augustus predicted protein sequence Tobacco scaffold2052_contigs=6~29987-30253 RVT_3 PF13456.1 g127334.t1 - 0.000054 22.8 0 0.000081 22.3 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2820_contigs=1, transcript_loc=scaffold2820_contigs=1:1229-1555 Augustus predicted protein sequence Tobacco scaffold2820_contigs=1~1229-1555 DUF3073 PF11273.3 g618.t1 - 0.076 13.5 0.6 0.1 13.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:19897-20103 Augustus predicted protein sequence Tobacco scaffold36_contigs=4~19897-20103 Ad_cyc_g-alpha PF08509.6 g129474.t1 - 0.014 14.7 0.1 0.019 14.2 0.1 1.2 1 0 0 1 1 1 0 Adenylate cyclase G-alpha binding domain | Ref_seq=scaffold2960_contigs=1, transcript_loc=scaffold2960_contigs=1:10497-10718 Augustus predicted protein sequence Tobacco scaffold2960_contigs=1~10497-10718 DUF3525 PF12039.3 g96771.t1 - 0.07 11.6 1.1 0.1 11.1 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:356620-357973 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~356620-357973 CBM49 PF09478.5 g77483.t1 - 0.018 15.1 0 3 7.9 0 2.1 2 0 0 2 2 2 0 Carbohydrate binding domain CBM49 | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:164235-164678 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~164235-164678 XPC-binding PF09280.6 g100802.t1 - 0.023 14.1 0.2 0.29 10.6 0.2 2.3 2 0 0 2 2 2 0 XPC-binding domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:28403-29020 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~28403-29020 AAA_18 PF13238.1 g15678.t1 - 0.12 12.6 0.1 0.2 11.9 0 1.4 1 1 0 1 1 1 0 AAA domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:62958-63440 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~62958-63440 DUF3490 PF11995.3 g112159.t1 - 0.058 12.9 0.5 0.53 9.8 0.1 2 1 1 1 2 2 2 0 Domain of unknown function (DUF3490) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:115407-116051 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~115407-116051 TPX2 PF06886.6 g27065.t1 - 1.8 8.7 4.4 3.2 7.8 0.2 3 2 1 1 3 3 3 0 Targeting protein for Xklp2 (TPX2) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:843862-845260 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~843862-845260 ELK PF03789.8 g120612.t1 - 0.14 11.9 1.2 0.14 11.9 0.8 1.8 2 0 0 2 2 2 0 ELK domain | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:328789-329109 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~328789-329109 MCM2_N PF12619.3 g73966.t1 - 0.037 14 3.3 0.049 13.6 2.3 1.1 1 0 0 1 1 1 0 Mini-chromosome maintenance protein 2 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:296780-297932 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~296780-297932 Vps5 PF09325.5 g119742.t1 - 0.0017 17.6 0.6 0.0028 16.9 0.4 1.2 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:43959-46538 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~43959-46538 Ribosomal_L37e PF01907.14 g87464.t1 - 0.45 10.3 3.4 0.56 10 1.3 1.8 2 0 0 2 2 2 0 Ribosomal protein L37e | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:152499-152789 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~152499-152789 zf-CCHC_4 PF14392.1 g71351.t1 - 0.011 15.4 2.6 0.018 14.6 1.8 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:586312-586584 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~586312-586584 ATHILA PF03078.10 g126144.t1 - 0.000015 23.8 0.1 0.000075 21.5 0 1.9 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:70350-70901 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~70350-70901 Microtub_bind PF13931.1 g6138.t1 - 0.027 14.5 0.3 0.032 14.3 0.2 1.1 1 0 0 1 1 1 0 Kinesin-associated microtubule-binding | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:115375-115727 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~115375-115727 CM_2 PF01817.16 g104959.t1 - 0.086 12.9 0 0.11 12.5 0 1.2 1 0 0 1 1 1 0 Chorismate mutase type II | Ref_seq=scaffold2349_contigs=3, transcript_loc=scaffold2349_contigs=3:20660-21316 Augustus predicted protein sequence Tobacco scaffold2349_contigs=3~20660-21316 SARA PF11409.3 g126982.t1 - 0.061 13.2 1.5 0.1 12.5 1 1.4 1 0 0 1 1 1 0 Smad anchor for receptor activation (SARA) | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:53417-54279 Augustus predicted protein sequence Tobacco scaffold2810_contigs=1~53417-54279 zf-DBF PF07535.7 g26037.t1 - 0.058 13 0.1 0.11 12.2 0 1.5 2 0 0 2 2 2 0 DBF zinc finger | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:28893-29512 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~28893-29512 zf-CCHC PF00098.18 g91759.t1 - 0.004 17 5 0.0063 16.3 3.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:62728-63146 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~62728-63146 DUF755 PF05501.6 g9324.t1 - 0.22 11.5 8.6 0.31 11.1 6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:170147-170560 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~170147-170560 MRP-L51 PF10244.4 g121413.t1 - 0.062 13.3 0 0.09 12.8 0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal subunit | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1172242-1172828 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1172242-1172828 RIO1 PF01163.17 g82436.t1 - 0.035 13.4 0 0.041 13.2 0 1.1 1 0 0 1 1 1 0 RIO1 family | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:513355-513710 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~513355-513710 DUF4264 PF14084.1 g83215.t1 - 0.014 14.7 0.1 0.022 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:362114-362410 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~362114-362410 DUF3073 PF11273.3 g81987.t1 - 8.5 6.9 9.8 17 6 0.2 3 2 1 1 3 3 3 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:405261-406088 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~405261-406088 DUF4200 PF13863.1 g106430.t1 - 0.0031 17.4 0.8 0.0048 16.8 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:188439-188771 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~188439-188771 ATHILA PF03078.10 g57379.t1 - 0.000000055 31.8 0.1 0.000000067 31.5 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:56714-57088 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~56714-57088 DpnD-PcfM PF14207.1 g70227.t1 - 0.052 13.3 0.2 0.096 12.4 0.1 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:102067-103404 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~102067-103404 DUF4355 PF14265.1 g43579.t1 - 0.026 14.4 0.4 0.028 14.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:60832-61126 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~60832-61126 PH_7 PF15408.1 g119112.t1 - 0.086 12.7 0 0.21 11.4 0 1.6 2 0 0 2 2 2 0 Pleckstrin homology domain | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:955984-958020 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~955984-958020 UBN2_3 PF14244.1 g126656.t1 - 0.015 14.8 0.4 0.02 14.4 0.3 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:5708-6549 Augustus predicted protein sequence Tobacco scaffold2802_contigs=1~5708-6549 IFP_35_N PF07334.8 g86776.t1 - 0.1 12.5 0.8 0.25 11.3 0.6 1.8 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:7482-8096 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~7482-8096 DUF2215 PF10225.4 g1306.t1 - 0.072 12.5 1.4 0.092 12.1 1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold170_contigs=1, transcript_loc=scaffold170_contigs=1:7562-7993 Augustus predicted protein sequence Tobacco scaffold170_contigs=1~7562-7993 IPPT PF01715.12 g13468.t1 - 0.089 11.7 0 0.11 11.4 0 1.2 1 0 0 1 1 1 0 IPP transferase | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:105390-105708 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~105390-105708 FCP1_C PF09309.5 g77866.t1 - 1 8.6 8.7 0.27 10.5 4 1.5 1 1 1 2 2 2 0 FCP1, C-terminal | Ref_seq=scaffold1638_contigs=15, transcript_loc=scaffold1638_contigs=15:390605-391565 Augustus predicted protein sequence Tobacco scaffold1638_contigs=15~390605-391565 DUF1894 PF08979.6 g96819.t1 - 0.01 15.9 0 7.6 6.6 0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1894) | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:35485-37368 Augustus predicted protein sequence Tobacco scaffold2122_contigs=11~35485-37368 PTS_IIB PF02302.12 g32241.t1 - 0.2 12.1 2.2 0.78 10.2 0 2.2 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit | Ref_seq=scaffold813_contigs=1, transcript_loc=scaffold813_contigs=1:70-890 Augustus predicted protein sequence Tobacco scaffold813_contigs=1~70-890 Transposase_28 PF04195.7 g29293.t1 - 0.00099 18.4 0.1 0.0013 18 0.1 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:173901-174500 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~173901-174500 zf-CCHC_4 PF14392.1 g3567.t1 - 0.012 15.2 3 0.026 14.1 2.1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:34004-34546 Augustus predicted protein sequence Tobacco scaffold236_contigs=3~34004-34546 zf-CCHC PF00098.18 g89435.t1 - 0.00039 20.2 1.1 0.00061 19.5 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:151646-152623 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~151646-152623 TraC_F_IV PF11130.3 g68772.t1 - 0.03 13.7 0.1 0.04 13.3 0.1 1.2 1 0 0 1 1 1 0 F pilus assembly Type-IV secretion system for plasmid transfer | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:34699-36372 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~34699-36372 ATHILA PF03078.10 g74379.t1 - 0.0014 17.2 0 0.0017 17 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:108712-109315 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~108712-109315 CAP_N PF01213.14 g130516.t1 - 0.21 10.8 2.8 0.33 10.1 2 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold4813_contigs=1, transcript_loc=scaffold4813_contigs=1:43-521 Augustus predicted protein sequence Tobacco scaffold4813_contigs=1~43-521 Sbi-IV PF11621.3 g22542.t1 - 0.0079 16.3 0.1 0.012 15.7 0.1 1.3 1 0 0 1 1 1 1 C3 binding domain 4 of IgG-bind protein SBI | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:55644-56003 Augustus predicted protein sequence Tobacco scaffold623_contigs=13~55644-56003 UPF0547 PF10571.4 g6246.t1 - 0.02 14.6 0.5 0.046 13.4 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:337943-338282 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~337943-338282 DUF4387 PF14330.1 g39986.t1 - 0.09 13.1 0 0.14 12.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:111877-112320 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~111877-112320 IFP_35_N PF07334.8 g52459.t1 - 0.032 14.1 1.9 0.076 12.9 1.3 1.7 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:304648-305091 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~304648-305091 K_oxygenase PF13434.1 g52126.t1 - 0.031 13.2 1.3 0.044 12.7 0.9 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:479441-479920 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~479441-479920 DUF3292 PF11696.3 g99391.t1 - 0.13 10.1 0.3 0.17 9.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:411557-412402 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~411557-412402 2Fe-2S_Ferredox PF11591.3 g31306.t1 - 0.21 11.2 6.5 2 8.1 0.4 3.4 2 1 1 3 3 3 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:121566-121963 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~121566-121963 Fer4_17 PF13534.1 g57217.t1 - 0.017 15.4 0.3 0.025 14.8 0.2 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:2529-2786 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~2529-2786 DMPK_coil PF08826.5 g86310.t1 - 0.12 12.2 1.9 0.26 11.1 1.3 1.6 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:18047-18788 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~18047-18788 Flagellar_rod PF05149.7 g56154.t1 - 0.014 14.6 1 0.017 14.3 0.7 1 1 0 0 1 1 1 0 Paraflagellar rod protein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:157322-157651 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~157322-157651 Vir_act_alpha_C PF10400.4 g14750.t1 - 0.033 14.5 1.3 0.041 14.2 0.1 1.7 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:127325-127687 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~127325-127687 Na_Pi_cotrans PF02690.10 g84872.t1 - 7.7 6.2 7.7 0.16 11.6 0.7 1.6 2 0 0 2 2 2 0 Na+/Pi-cotransporter | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:104986-105330 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~104986-105330 NAF PF03822.9 g20908.t1 - 0.0017 18 1.8 0.0017 18 1.3 1.6 1 1 1 2 2 2 1 NAF domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:12936-13157 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~12936-13157 BCAS2 PF05700.6 g53110.t1 - 0.003 17 1.6 0.0037 16.7 1.1 1 1 0 0 1 1 1 1 Breast carcinoma amplified sequence 2 (BCAS2) | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:61018-61533 Augustus predicted protein sequence Tobacco scaffold1184_contigs=2~61018-61533 LRRNT_2 PF08263.7 g113158.t1 - 0.23 11.4 1.6 0.37 10.7 1.1 1.4 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold2622_contigs=9, transcript_loc=scaffold2622_contigs=9:20077-20325 Augustus predicted protein sequence Tobacco scaffold2622_contigs=9~20077-20325 RVT_3 PF13456.1 g11766.t1 - 0.00003 23.7 0 0.000043 23.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:110460-111540 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~110460-111540 Rubi_NSP_C PF12601.3 g47581.t1 - 0.042 13.7 0 0.067 13 0 1.4 1 0 0 1 1 1 0 Rubivirus non-structural protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:277917-278201 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~277917-278201 ATHILA PF03078.10 g71860.t1 - 0.018 13.6 0 3 6.3 0 2 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:225742-226239 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~225742-226239 DDHD PF02862.12 g89142.t1 - 0.038 13.7 1 0.045 13.5 0.7 1.2 1 0 0 1 1 1 0 DDHD domain | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:184060-185460 Augustus predicted protein sequence Tobacco scaffold1939_contigs=7~184060-185460 DUF2340 PF10209.4 g17826.t1 - 0.027 14.6 0.2 0.032 14.4 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2340) | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:308525-309332 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~308525-309332 Cupredoxin_1 PF13473.1 g70465.t1 - 0.0032 17.3 0.8 0.011 15.6 0.6 1.8 1 1 1 2 2 2 1 Cupredoxin-like domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:17763-18107 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~17763-18107 Vps5 PF09325.5 g50684.t1 - 0.032 13.4 0.5 0.054 12.7 0.3 1.3 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:19030-21546 Augustus predicted protein sequence Tobacco scaffold1143_contigs=1~19030-21546 MNNL PF07657.8 g130043.t1 - 0.19 11.6 7 5.1 7.1 3.2 2.5 1 1 2 3 3 3 0 N terminus of Notch ligand | Ref_seq=scaffold3360_contigs=1, transcript_loc=scaffold3360_contigs=1:1-232 Augustus predicted protein sequence Tobacco scaffold3360_contigs=1~1-232 Usg PF06233.7 g96662.t1 - 0.067 13 0 0.096 12.5 0 1.3 1 0 0 1 1 1 0 Usg-like family | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:95169-95588 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~95169-95588 DUF4219 PF13961.1 g8091.t1 - 0.18 11.2 1.1 0.4 10.1 0.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:18480-18788 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~18480-18788 Colicin_immun PF09204.5 g59197.t1 - 0.066 13.2 1 0.097 12.7 0.7 1.3 1 1 0 1 1 1 0 Bacterial self-protective colicin-like immunity | Ref_seq=scaffold1284_contigs=5, transcript_loc=scaffold1284_contigs=5:138184-138435 Augustus predicted protein sequence Tobacco scaffold1284_contigs=5~138184-138435 RBP_receptor PF14752.1 g88519.t1 - 0.1 10.9 0 0.1 10.9 0 1 1 0 0 1 1 1 0 Retinol binding protein receptor | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:15992-16333 Augustus predicted protein sequence Tobacco scaffold1928_contigs=20~15992-16333 UPF0560 PF10577.4 g17152.t1 - 0.088 11 0.7 0.098 10.8 0.5 1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:49988-50221 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~49988-50221 Phage_B PF02304.10 g111103.t1 - 0.49 10.6 2.6 0.95 9.7 1.8 1.5 1 0 0 1 1 1 0 Scaffold protein B | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:77511-78059 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~77511-78059 Pheromone PF08015.6 g78.t1 - 0.16 12.8 2.5 0.2 12.5 1.7 1.2 1 0 0 1 1 1 0 Fungal mating-type pheromone | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:43998-44216 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~43998-44216 Orbi_NS3 PF01616.11 g6450.t1 - 0.11 11.3 0 0.15 10.9 0 1.1 1 0 0 1 1 1 0 Orbivirus NS3 | Ref_seq=scaffold297_contigs=3, transcript_loc=scaffold297_contigs=3:26650-26913 Augustus predicted protein sequence Tobacco scaffold297_contigs=3~26650-26913 InvH PF04741.7 g17636.t1 - 0.016 15 0.1 0.02 14.7 0 1.3 1 0 0 1 1 1 0 InvH outer membrane lipoprotein | Ref_seq=scaffold533_contigs=2, transcript_loc=scaffold533_contigs=2:9341-9889 Augustus predicted protein sequence Tobacco scaffold533_contigs=2~9341-9889 HET-s_218-289 PF11558.3 g125133.t1 - 0.11 12.4 0 0.16 11.9 0 1.2 1 0 0 1 1 1 0 Het-s 218-289 | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:155519-156650 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~155519-156650 TFIIE-A_C-term PF11521.3 g42477.t1 - 0.018 14.9 0.1 0.028 14.3 0.1 1.3 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:130073-131505 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~130073-131505 DUF2457 PF10446.4 g118549.t1 - 0.079 11.6 13.5 0.071 11.8 9.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:162935-163204 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~162935-163204 DUF4608 PF15381.1 g64407.t1 - 0.22 11.6 3.4 7.5 6.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:1-167 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~1-167 DUF1985 PF09331.6 g115415.t1 - 0.000000045 33 0 0.000000062 32.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:304840-306815 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~304840-306815 ATHILA PF03078.10 g41452.t1 - 0.00022 19.9 0.1 0.06 11.9 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:350191-350550 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~350191-350550 Thioredoxin_7 PF13899.1 g55179.t1 - 0.02 14.8 0 0.12 12.3 0 2.1 1 1 1 2 2 2 0 Thioredoxin-like | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:75459-76000 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~75459-76000 LRR_3 PF07725.7 g63973.t1 - 0.064 13 0.1 0.45 10.3 0 2.2 2 0 0 2 2 2 0 Leucine Rich Repeat | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:48190-48638 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~48190-48638 RVT_2 PF07727.9 g121821.t1 - 0.0014 17.6 0 0.0017 17.3 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:457515-459099 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~457515-459099 FAM176 PF14851.1 g67403.t1 - 0.14 11.8 0.3 0.26 10.9 0.2 1.4 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:213927-214986 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~213927-214986 PRCC PF10253.4 g39813.t1 - 0.051 14.2 0.2 0.08 13.6 0.1 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:284952-285206 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~284952-285206 BMC PF00936.14 g50808.t1 - 0.093 12.4 0.9 0.094 12.4 0 1.5 2 0 0 2 2 2 0 BMC domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:204019-204249 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~204019-204249 zf-CCHC PF00098.18 g52460.t1 - 0.0039 17 1.6 0.0069 16.2 1.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:305182-305523 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~305182-305523 Cytochrom_B559a PF00284.15 g99821.t1 - 0.56 9.7 2.7 1.2 8.6 1.9 1.5 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:64411-64938 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~64411-64938 PBP1_TM PF14812.1 g99974.t1 - 0.012 15.9 3 0.015 15.5 2.1 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:106086-106567 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~106086-106567 DUF276 PF03434.8 g44008.t1 - 0.066 12.1 0 0.095 11.6 0 1.3 1 0 0 1 1 1 0 DUF276 | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:183546-185774 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~183546-185774 FBA_2 PF07735.12 g15717.t1 - 0.087 12.6 0.9 0.46 10.3 0 2.2 2 1 0 2 2 2 0 F-box associated | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:160568-160897 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~160568-160897 DUF4428 PF14471.1 g83413.t1 - 0.0097 15.6 0.8 0.017 14.8 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:85388-86765 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~85388-86765 RVT_3 PF13456.1 g62540.t1 - 0.034 13.9 0 0.04 13.7 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:184874-185104 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~184874-185104 zf-TFIIB PF13453.1 g42443.t1 - 0.14 11.3 0.2 0.19 10.9 0.2 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:52600-52821 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~52600-52821 SYCE1 PF15233.1 g63589.t1 - 0.045 13.6 14.8 0.02 14.8 7.3 2.2 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:48738-52647 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~48738-52647 zf-BED PF02892.10 g107235.t1 - 0.000001 28.4 0 0.000001 28.4 0 1.8 2 1 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:994758-995075 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~994758-995075 DUF1548 PF07579.6 g63228.t1 - 0.0051 16.9 0 0.015 15.3 0 1.6 1 1 1 2 2 2 1 Domain of Unknown Function (DUF1548) | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:122728-123914 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~122728-123914 CbiG_C PF01890.11 g77933.t1 - 0.034 14.3 0 0.04 14.1 0 1.2 1 0 0 1 1 1 0 Cobalamin synthesis G C-terminus | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:64852-65241 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~64852-65241 HALZ PF02183.13 g101201.t1 - 0.013 15.2 10.3 0.018 14.7 1.2 2.8 2 1 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:280473-281051 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~280473-281051 DUF1736 PF08409.6 g21234.t1 - 0.025 14.1 0 0.03 13.8 0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1736) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:38615-38961 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~38615-38961 CitG PF01874.11 g42089.t1 - 0.11 11.7 0 0.12 11.5 0 1 1 0 0 1 1 1 0 ATP:dephospho-CoA triphosphoribosyl transferase | Ref_seq=scaffold1002_contigs=4, transcript_loc=scaffold1002_contigs=4:71637-73300 Augustus predicted protein sequence Tobacco scaffold1002_contigs=4~71637-73300 EBV-NA3 PF05009.7 g35552.t1 - 0.33 10.1 2.6 0.34 10.1 1.8 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:47703-47930 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~47703-47930 C1_1 PF00130.17 g89797.t1 - 0.0000098 25.2 1.6 0.000018 24.3 1.1 1.4 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:43807-44773 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~43807-44773 ANATO PF01821.13 g87424.t1 - 0.14 12.3 0 26 5 0 2.3 2 0 0 2 2 2 0 Anaphylotoxin-like domain | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:54244-54981 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~54244-54981 DUF4283 PF14111.1 g58823.t1 - 0.00041 19.4 0 0.00056 19 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:41014-42101 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~41014-42101 DUF4219 PF13961.1 g4518.t1 - 0.0025 17.1 1.2 0.0032 16.8 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:16282-16545 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~16282-16545 ATHILA PF03078.10 g26937.t1 - 0.000000098 31 0 0.00000011 30.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:556409-556669 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~556409-556669 zf-BED PF02892.10 g121366.t1 - 0.034 13.9 3 0.071 12.8 2.1 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:993494-993930 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~993494-993930 Med16 PF11635.3 g28675.t1 - 0.072 11 0 0.098 10.6 0 1.1 1 0 0 1 1 1 0 Mediator complex subunit 16 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:41107-41707 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~41107-41707 Kinesin-relat_1 PF12711.2 g35654.t1 - 0.27 11.6 3.5 9 6.7 0.1 2.1 1 1 1 2 2 2 0 Kinesin motor | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:287851-288099 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~287851-288099 NAM-associated PF14303.1 g65014.t1 - 0.000069 23.2 3.4 0.000085 22.9 2.3 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1394_contigs=4, transcript_loc=scaffold1394_contigs=4:8320-8661 Augustus predicted protein sequence Tobacco scaffold1394_contigs=4~8320-8661 Vir_act_alpha_C PF10400.4 g95729.t1 - 0.048 14 0.2 0.052 13.9 0.1 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:188065-188283 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~188065-188283 IFP_35_N PF07334.8 g96210.t1 - 0.031 14.2 0.8 0.076 12.9 0.5 1.6 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:114161-114556 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~114161-114556 Cytochrome-c551 PF10643.4 g73416.t1 - 0.016 14.4 0 0.018 14.3 0 1 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 | Ref_seq=scaffold1540_contigs=16, transcript_loc=scaffold1540_contigs=16:89631-90142 Augustus predicted protein sequence Tobacco scaffold1540_contigs=16~89631-90142 bZIP_1 PF00170.16 g125573.t1 - 0.0062 16.4 6.2 0.67 9.9 0.2 2.3 1 1 1 2 2 2 2 bZIP transcription factor | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:80671-81090 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~80671-81090 Strumpellin PF10266.4 g115766.t1 - 0.036 11.4 0.1 0.036 11.4 0.1 1 1 0 0 1 1 1 0 Hereditary spastic paraplegia protein strumpellin | Ref_seq=scaffold2662_contigs=2, transcript_loc=scaffold2662_contigs=2:52503-52706 Augustus predicted protein sequence Tobacco scaffold2662_contigs=2~52503-52706 Gly-rich_Ago1 PF12764.2 g130149.t1 - 0.2 12.3 1.6 0.27 11.8 1.1 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold3542_contigs=1, transcript_loc=scaffold3542_contigs=1:1019-1243 Augustus predicted protein sequence Tobacco scaffold3542_contigs=1~1019-1243 Radical_SAM_N PF08497.5 g111504.t1 - 0.035 13 0.4 0.036 12.9 0.3 1 1 0 0 1 1 1 0 Radical SAM N-terminal | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:745795-746016 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~745795-746016 rve PF00665.21 g97017.t1 - 0.000058 23.1 0.1 0.43 10.7 0 2.2 1 1 1 2 2 2 2 Integrase core domain | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:335229-336459 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~335229-336459 DUF3580 PF12117.3 g104385.t1 - 0.11 12.4 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3580) | Ref_seq=scaffold2338_contigs=16, transcript_loc=scaffold2338_contigs=16:55635-56093 Augustus predicted protein sequence Tobacco scaffold2338_contigs=16~55635-56093 Med2 PF11214.3 g41662.t1 - 0.071 13.1 0.4 0.08 12.9 0.3 1.2 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:155862-156164 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~155862-156164 Sigma70_ner PF04546.8 g111279.t1 - 0.0000012 28.3 2.3 0.0000018 27.7 1.6 1.3 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:19907-21711 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~19907-21711 Pro_CA PF00484.14 g27067.t1 - 0.098 12.6 0.1 0.15 12 0.1 1.2 1 0 0 1 1 1 0 Carbonic anhydrase | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:848205-849932 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~848205-849932 DBD_Tnp_Mut PF03108.10 g24806.t1 - 0.0018 17.7 0.1 0.0025 17.3 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:46372-46779 Augustus predicted protein sequence Tobacco scaffold677_contigs=5~46372-46779 Fe_dep_repr_C PF02742.10 g55471.t1 - 0.099 12.3 0 0.21 11.3 0 1.5 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:224498-224869 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~224498-224869 YTH PF04146.10 g68997.t1 - 0.0032 17 0 0.0041 16.7 0 1.1 1 0 0 1 1 1 1 YT521-B-like domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:273685-273939 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~273685-273939 G-7-MTase PF12803.2 g6379.t1 - 0.05 12.7 0.1 0.051 12.7 0.1 1.1 1 0 0 1 1 1 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:21357-21674 Augustus predicted protein sequence Tobacco scaffold296_contigs=6~21357-21674 ArsB PF02040.10 g76848.t1 - 0.16 10.8 0.1 0.18 10.6 0.1 1 1 0 0 1 1 1 0 Arsenical pump membrane protein | Ref_seq=scaffold1621_contigs=2, transcript_loc=scaffold1621_contigs=2:42229-43566 Augustus predicted protein sequence Tobacco scaffold1621_contigs=2~42229-43566 KN_motif PF12075.3 g17080.t1 - 0.052 13.3 5.1 4 7.3 0 3.1 3 0 0 3 3 3 0 KN motif | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:415341-415887 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~415341-415887 DUF3007 PF11460.3 g23965.t1 - 0.12 12.4 1.6 0.16 12 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3007) | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:14310-15823 Augustus predicted protein sequence Tobacco scaffold656_contigs=9~14310-15823 RICTOR_phospho PF14665.1 g123323.t1 - 0.02 14.9 2.6 0.062 13.3 0.3 2 1 1 1 2 2 2 0 Rapamycin-insensitive companion of mTOR, phosphorylation-site | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:136650-137653 Augustus predicted protein sequence Tobacco scaffold2756_contigs=5~136650-137653 Ribosomal_L6e_N PF03868.10 g118.t1 - 0.015 15.1 0.2 0.022 14.6 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L6, N-terminal domain | Ref_seq=scaffold6_contigs=8, transcript_loc=scaffold6_contigs=8:67284-67559 Augustus predicted protein sequence Tobacco scaffold6_contigs=8~67284-67559 TerD PF02342.13 g27084.t1 - 0.052 12.8 0.3 0.061 12.6 0.2 1.1 1 0 0 1 1 1 0 TerD domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:879495-880156 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~879495-880156 DUF2785 PF10978.3 g20524.t1 - 0.01 15.2 1.2 0.011 15.1 0.8 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:415908-416159 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~415908-416159 Curto_V2 PF07325.6 g126739.t1 - 0.1 12.2 0 0.14 11.7 0 1.2 1 0 0 1 1 1 0 Curtovirus V2 protein | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:62924-63694 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~62924-63694 Syntaxin_2 PF14523.1 g119786.t1 - 0.15 12.1 0.7 0.36 10.8 0.2 1.7 1 1 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:161034-162335 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~161034-162335 Autophagy_N PF03986.8 g75879.t1 - 0.052 13.3 0.1 0.072 12.8 0.1 1.2 1 0 0 1 1 1 0 Autophagocytosis associated protein (Atg3), N-terminal domain | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:87783-88873 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~87783-88873 PSCyt3 PF07627.6 g70070.t1 - 0.085 12.7 0.2 0.43 10.4 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:189735-190484 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~189735-190484 C4 PF01413.14 g22211.t1 - 0.078 12.8 0 0.11 12.3 0 1.3 1 0 0 1 1 1 0 C-terminal tandem repeated domain in type 4 procollagen | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:212187-212831 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~212187-212831 Peptidase_C48 PF02902.14 g97090.t1 - 0.046 13.3 0 0.046 13.3 0 1.1 1 0 0 1 1 1 0 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:512963-513208 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~512963-513208 DUF2791 PF10923.3 g121057.t1 - 0.2 10.2 0.3 0.25 9.8 0.2 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:289933-290478 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~289933-290478 DUF3304 PF11745.3 g115567.t1 - 0.083 13.1 0.1 0.11 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3304) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:668317-668678 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~668317-668678 DED PF01335.16 g91358.t1 - 0.14 12.2 1.2 0.16 12.1 0.2 1.5 2 0 0 2 2 2 0 Death effector domain | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:11912-12244 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~11912-12244 zf-CCHC PF00098.18 g86645.t1 - 0.000043 23.2 0.7 0.000098 22.1 0.5 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:93335-93943 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~93335-93943 CRA PF06589.6 g5094.t1 - 0.046 13 0.5 0.06 12.6 0.2 1.4 1 1 0 1 1 1 0 Circumsporozoite-related antigen (CRA) | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:306112-306920 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~306112-306920 Ustilago_mating PF05722.7 g59230.t1 - 0.0064 15.8 0.1 0.0077 15.5 0 1.1 1 0 0 1 1 1 1 Ustilago B locus mating-type protein | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:15119-15397 Augustus predicted protein sequence Tobacco scaffold1285_contigs=4~15119-15397 HpaP PF09483.5 g123897.t1 - 0.16 11.9 1.2 0.19 11.6 0.8 1.3 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:843417-843806 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~843417-843806 Cwf_Cwc_15 PF04889.7 g65900.t1 - 0.3 10.7 3.1 0.44 10.2 2.1 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:24960-25220 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~24960-25220 PRCC PF10253.4 g117943.t1 - 0.055 14.1 0.3 0.11 13.1 0.2 1.6 1 1 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:64312-64869 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~64312-64869 DUF4172 PF13776.1 g39845.t1 - 0.0073 16.3 1.3 0.068 13.2 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4172) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:381742-382236 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~381742-382236 FlgD PF03963.9 g44478.t1 - 2.8 8 4.2 18 5.4 0.1 2.2 1 1 1 2 2 2 0 Flagellar hook capping protein - N-terminal region | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:187136-187474 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~187136-187474 zf-CCHC PF00098.18 g23221.t1 - 0.00043 20 0.3 0.00068 19.4 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:46917-47291 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~46917-47291 CRCB PF02537.10 g124943.t1 - 0.1 12.4 2.9 0.14 12 2 1.2 1 0 0 1 1 1 0 CrcB-like protein | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:212932-213427 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~212932-213427 P33MONOX PF15302.1 g113480.t1 - 0.43 10.1 2.4 0.43 10.1 1.7 1.1 1 0 0 1 1 1 0 P33 mono-oxygenase | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:115805-116098 Augustus predicted protein sequence Tobacco scaffold2632_contigs=8~115805-116098 IGFL PF14653.1 g46053.t1 - 0.014 15.4 1.2 0.016 15.2 0.9 1.1 1 0 0 1 1 1 0 Insulin growth factor-like family | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:389277-389498 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~389277-389498 FH2 PF02181.18 g82356.t1 - 0.0046 15.8 0.1 0.0056 15.6 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:303633-304046 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~303633-304046 Rnk_N PF14760.1 g59161.t1 - 0.08 13 0.2 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Rnk N-terminus | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:51066-51929 Augustus predicted protein sequence Tobacco scaffold1283_contigs=15~51066-51929 Rootletin PF15035.1 g80618.t1 - 0.021 14.8 6 0.031 14.2 4.2 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:178333-179076 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~178333-179076 DUF1147 PF06615.6 g29345.t1 - 0.052 13.3 0.1 0.091 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1147) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:267026-267481 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~267026-267481 Sigma54_AID PF00309.15 g31000.t1 - 0.0077 15.6 0.5 14 5.2 0 3.1 3 0 0 3 3 3 2 Sigma-54 factor, Activator interacting domain (AID) | Ref_seq=scaffold782_contigs=17, transcript_loc=scaffold782_contigs=17:393865-395333 Augustus predicted protein sequence Tobacco scaffold782_contigs=17~393865-395333 Cupredoxin_1 PF13473.1 g67556.t1 - 0.093 12.6 0.2 0.33 10.8 0 1.9 1 1 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:93979-94500 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~93979-94500 ParG PF09274.5 g77305.t1 - 0.1 12.5 0 0.12 12.3 0 1.1 1 0 0 1 1 1 0 ParG | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:276800-277955 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~276800-277955 Tiny_TM_bacill PF09680.5 g88060.t1 - 1 8.8 4.9 1.7 8.1 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold1913_contigs=1, transcript_loc=scaffold1913_contigs=1:82919-84315 Augustus predicted protein sequence Tobacco scaffold1913_contigs=1~82919-84315 KBP_C PF12309.3 g25938.t1 - 0.04 12.9 0.1 0.046 12.7 0.1 1.1 1 0 0 1 1 1 0 KIF-1 binding protein C terminal | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:124986-126113 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~124986-126113 DUF1985 PF09331.6 g63427.t1 - 0.007 16.1 0 0.0081 15.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:251341-252109 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~251341-252109 Herpes_IE68 PF02479.11 g42260.t1 - 0.036 13.2 0.1 0.11 11.6 0 1.8 2 0 0 2 2 2 0 Herpesvirus immediate early protein | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:292932-293492 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~292932-293492 Antitoxin-MazE PF04014.13 g97799.t1 - 0.031 13.9 0.2 8.9 6.1 0 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:185661-187074 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~185661-187074 Ribosomal_L44 PF00935.14 g76189.t1 - 0.062 13.3 0.5 0.082 12.9 0.4 1.2 1 0 0 1 1 1 0 Ribosomal protein L44 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:218606-219139 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~218606-219139 DUF4319 PF14203.1 g20367.t1 - 0.089 12.3 0 0.14 11.7 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:140262-140504 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~140262-140504 Toxin_7 PF05980.7 g10788.t1 - 0.076 13 1.1 0.14 12.2 0.1 1.9 2 0 0 2 2 2 0 Toxin 7 | Ref_seq=scaffold393_contigs=8, transcript_loc=scaffold393_contigs=8:120220-120498 Augustus predicted protein sequence Tobacco scaffold393_contigs=8~120220-120498 VGCC_beta4Aa_N PF12052.3 g94541.t1 - 0.016 15 0.1 0.033 14 0.1 1.7 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:14718-18269 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~14718-18269 TSKS PF15358.1 g85183.t1 - 0.033 12.3 1 0.037 12.2 0.7 1.2 1 0 0 1 1 1 0 Testis-specific serine kinase substrate | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:395408-395977 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~395408-395977 Cwf_Cwc_15 PF04889.7 g49931.t1 - 0.48 10.1 2.4 0.62 9.7 1.7 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:391506-391910 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~391506-391910 Tna_leader PF08053.6 g7536.t1 - 0.053 12.8 3.6 4.7 6.6 0.2 2.5 2 0 0 2 2 2 0 Tryptophanese operon leader peptide | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:305647-308601 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~305647-308601 Tropomyosin_1 PF12718.2 g71115.t1 - 0.079 12.8 0 0.13 12 0 1.3 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:57457-58215 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~57457-58215 Exotox-A_cataly PF09009.5 g27261.t1 - 0.0041 16 0 0.005 15.7 0 1 1 0 0 1 1 1 1 Exotoxin A catalytic | Ref_seq=scaffold722_contigs=14, transcript_loc=scaffold722_contigs=14:516750-517491 Augustus predicted protein sequence Tobacco scaffold722_contigs=14~516750-517491 DUF4641 PF15483.1 g109231.t1 - 0.076 11.7 0.1 0.076 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4641) | Ref_seq=scaffold2487_contigs=5, transcript_loc=scaffold2487_contigs=5:2037-2303 Augustus predicted protein sequence Tobacco scaffold2487_contigs=5~2037-2303 HSBP1 PF06825.7 g77526.t1 - 0.074 12.6 2.3 2 8 0.4 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:271544-273805 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~271544-273805 EPSP_synthase PF00275.15 g121181.t1 - 0.042 12.2 0 0.05 12 0 1.2 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:124106-124381 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~124106-124381 Transgly_assoc PF04226.8 g956.t1 - 0.025 14.6 0.2 0.04 13.9 0.1 1.3 1 0 0 1 1 1 0 Transglycosylase associated protein | Ref_seq=scaffold87_contigs=1, transcript_loc=scaffold87_contigs=1:4005-5099 Augustus predicted protein sequence Tobacco scaffold87_contigs=1~4005-5099 XYPPX PF02162.12 g103047.t1 - 0.4 10.3 4.5 9.4 5.9 0.3 2.3 2 0 0 2 2 2 0 XYPPX repeat (two copies) | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:20873-21456 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~20873-21456 SPW PF03779.9 g42275.t1 - 3.6 7 7.8 12 5.4 5.4 1.8 1 1 0 1 1 1 0 SPW repeat | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:320459-321953 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~320459-321953 SF-assemblin PF06705.6 g79700.t1 - 0.044 12.9 0.1 0.047 12.8 0.1 1 1 0 0 1 1 1 0 SF-assemblin/beta giardin | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:32310-33003 Augustus predicted protein sequence Tobacco scaffold1701_contigs=25~32310-33003 KRAP_IP3R_bind PF14722.1 g33340.t1 - 0.17 11.4 0.5 9.3 5.8 0.1 2.2 1 1 1 2 2 2 0 Ki-ras-induced actin-interacting protein-IP3R-interacting domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:74436-75504 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~74436-75504 Pro_Al_protease PF02983.9 g106255.t1 - 0.19 11.7 0.4 0.34 10.9 0.2 1.5 2 0 0 2 2 2 0 Alpha-lytic protease prodomain | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:13885-14419 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~13885-14419 Transglut_i_TM PF14400.1 g117845.t1 - 0.15 11.6 0.4 0.19 11.2 0.3 1.1 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:113212-114736 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~113212-114736 HemY_N PF07219.8 g42214.t1 - 0.1 12.1 0.5 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 HemY protein N-terminus | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:188061-188408 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~188061-188408 ADH_N PF08240.7 g16018.t1 - 0.018 14.8 0 0.03 14 0 1.4 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:73125-74037 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~73125-74037 NAM-associated PF14303.1 g76406.t1 - 0.00026 21.3 3 0.00031 21 2.1 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:167624-167947 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~167624-167947 VGCC_beta4Aa_N PF12052.3 g41316.t1 - 0.13 12.1 0.4 0.18 11.7 0.3 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:118048-118425 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~118048-118425 Jnk-SapK_ap_N PF09744.4 g122907.t1 - 0.038 13.9 8.4 0.59 10.1 1.6 2 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:86434-86769 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~86434-86769 VP7 PF00434.13 g42007.t1 - 0.11 11.3 0 0.11 11.3 0 1 1 0 0 1 1 1 0 Glycoprotein VP7 | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:13751-14481 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~13751-14481 DMPK_coil PF08826.5 g18581.t1 - 0.0065 16.3 3 0.01 15.6 2.1 1.3 1 0 0 1 1 1 1 DMPK coiled coil domain like | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:265239-266529 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~265239-266529 DUF3795 PF12675.2 g60623.t1 - 3.7 7.8 8.5 6 7.1 5.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3795) | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:89796-90442 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~89796-90442 DUF3523 PF12037.3 g65128.t1 - 0.24 10.3 1.2 0.52 9.2 0.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3523) | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:119016-120963 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~119016-120963 zf-CCHC_4 PF14392.1 g60880.t1 - 0.00049 19.6 1.4 0.00074 19.1 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:501808-502188 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~501808-502188 CDC27 PF09507.5 g29256.t1 - 0.2 10.8 4.8 0.28 10.3 3.3 1.2 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:86395-86859 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~86395-86859 Zea_mays_MuDR PF05928.6 g103717.t1 - 0.1 11.9 0 0.12 11.8 0 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:4869-5240 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~4869-5240 BatD PF13584.1 g123620.t1 - 0.12 10.8 0 0.16 10.5 0 1.1 1 0 0 1 1 1 0 Oxygen tolerance | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:157607-159569 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~157607-159569 NADH5_C PF06455.6 g102132.t1 - 0.048 13 0.1 0.065 12.6 0.1 1.2 1 0 0 1 1 1 0 NADH dehydrogenase subunit 5 C-terminus | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:173183-173452 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~173183-173452 Ead_Ea22 PF13935.1 g57403.t1 - 0.019 15.2 0 0.024 14.9 0 1.1 1 0 0 1 1 1 0 Ead/Ea22-like protein | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:95971-97054 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~95971-97054 IFP_35_N PF07334.8 g53615.t1 - 0.21 11.5 6.8 0.21 11.5 0.1 3.4 2 1 1 3 3 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:202043-202921 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~202043-202921 Na_trans_assoc PF06512.8 g66026.t1 - 0.029 14.3 0.9 0.028 14.3 0.6 1 1 0 0 1 1 1 0 Sodium ion transport-associated | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:168573-168851 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~168573-168851 DUF3580 PF12117.3 g31800.t1 - 0.34 10.8 3.2 0.42 10.5 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3580) | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:57706-58047 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~57706-58047 DUF4143 PF13635.1 g105186.t1 - 0.0021 18.2 0 0.0032 17.6 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:514240-516544 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~514240-516544 DBD_Tnp_Mut PF03108.10 g104297.t1 - 2.3E-009 36.6 0.2 4.8E-009 35.6 0.1 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:424405-425091 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~424405-425091 PBP_sp32 PF07222.7 g34469.t1 - 0.0041 16.3 3.5 0.0075 15.4 2.5 1.4 1 0 0 1 1 1 1 Proacrosin binding protein sp32 | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:104736-107126 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~104736-107126 Chon_Sulph_att PF06566.6 g116108.t1 - 2.3 7.7 9.7 2.7 7.5 6.7 1.2 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:658873-659355 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~658873-659355 DUF4478 PF14793.1 g19904.t1 - 0.093 12.3 0 0.12 12 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4478) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:4071-4364 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~4071-4364 DUF2681 PF10883.3 g71538.t1 - 0.19 11.9 6.1 0.21 11.8 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:243090-243914 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~243090-243914 RVP_2 PF08284.6 g81521.t1 - 5.4E-009 36.1 0 9.9E-009 35.2 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:135767-139000 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~135767-139000 Chitin_bind_1 PF00187.14 g50265.t1 - 0.044 13.7 0.4 0.079 12.9 0.3 1.4 1 0 0 1 1 1 0 Chitin recognition protein | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:251512-252015 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~251512-252015 SSXRD PF09514.5 g26189.t1 - 0.27 10.5 3.9 7.2 6 0.1 2.4 2 0 0 2 2 2 0 SSXRD motif | Ref_seq=scaffold712_contigs=6, transcript_loc=scaffold712_contigs=6:2793-4474 Augustus predicted protein sequence Tobacco scaffold712_contigs=6~2793-4474 eIF3_subunit PF08597.5 g38319.t1 - 0.46 9.9 5.2 0.54 9.7 3.6 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:350432-350926 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~350432-350926 SurA_N_3 PF13624.1 g112575.t1 - 0.0063 16.5 0.2 0.0078 16.2 0.2 1.1 1 0 0 1 1 1 1 SurA N-terminal domain | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:223425-223894 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~223425-223894 VGCC_beta4Aa_N PF12052.3 g67533.t1 - 0.23 11.3 5.3 0.35 10.7 3.7 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:45860-46952 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~45860-46952 Toxin_24 PF08094.6 g57237.t1 - 0.1 12.2 8.1 3.9 7.1 0 2.6 2 1 0 2 2 2 0 Conotoxin TVIIA/GS family | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:28429-28740 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~28429-28740 ATHILA PF03078.10 g77261.t1 - 0.00064 18.4 0 0.0022 16.6 0 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:200628-202166 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~200628-202166 DUF3688 PF12461.3 g128156.t1 - 0.035 14.4 0 0.042 14.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3688) | Ref_seq=scaffold2852_contigs=1, transcript_loc=scaffold2852_contigs=1:26186-28013 Augustus predicted protein sequence Tobacco scaffold2852_contigs=1~26186-28013 Rabaptin PF03528.10 g117384.t1 - 0.049 13.5 0 0.049 13.5 0 1.2 1 0 0 1 1 1 0 Rabaptin | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:32679-32930 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~32679-32930 DUF724 PF05266.9 g73801.t1 - 0.0085 15.7 8.7 0.013 15.1 6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF724) | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:40617-41652 Augustus predicted protein sequence Tobacco scaffold1548_contigs=4~40617-41652 Kelch_2 PF07646.10 g60429.t1 - 0.042 13.6 0 0.061 13.1 0 1.3 1 0 0 1 1 1 0 Kelch motif | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:113758-114816 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~113758-114816 Mito_fiss_reg PF05308.6 g36066.t1 - 0.29 10.4 5.5 0.33 10.2 3.8 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:213400-213732 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~213400-213732 DUF1967 PF09269.6 g47759.t1 - 0.079 12.6 0 0.11 12.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) | Ref_seq=scaffold1100_contigs=3, transcript_loc=scaffold1100_contigs=3:56010-56864 Augustus predicted protein sequence Tobacco scaffold1100_contigs=3~56010-56864 B5 PF03484.10 g110562.t1 - 0.0073 16.1 0 3.9 7.3 0 2.7 2 1 0 2 2 2 2 tRNA synthetase B5 domain | Ref_seq=scaffold2564_contigs=13, transcript_loc=scaffold2564_contigs=13:90662-91375 Augustus predicted protein sequence Tobacco scaffold2564_contigs=13~90662-91375 DUF1495 PF07381.6 g96282.t1 - 0.0013 18.3 0 8.2 6.1 0 3.1 3 0 0 3 3 3 3 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold2099_contigs=9, transcript_loc=scaffold2099_contigs=9:1-1916 Augustus predicted protein sequence Tobacco scaffold2099_contigs=9~1-1916 DBINO PF13892.1 g123633.t1 - 0.00027 20.9 4.6 0.00032 20.7 3.2 1.1 1 0 0 1 1 1 1 DNA-binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:176841-177236 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~176841-177236 K_channel_TID PF07941.6 g98029.t1 - 0.082 13.1 0.2 0.082 13.1 0.1 2.4 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain | Ref_seq=scaffold2150_contigs=4, transcript_loc=scaffold2150_contigs=4:4816-5316 Augustus predicted protein sequence Tobacco scaffold2150_contigs=4~4816-5316 DCA16 PF15349.1 g69264.t1 - 0.021 14.2 0.3 0.025 13.9 0.2 1.1 1 0 0 1 1 1 0 DDB1- and CUL4-associated factor 16 | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:99146-99529 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~99146-99529 CCAP PF11105.3 g43354.t1 - 0.074 12.7 0 0.091 12.4 0 1.1 1 0 0 1 1 1 0 Arthropod cardioacceleratory peptide 2a | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:54013-56672 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~54013-56672 Fez1 PF06818.10 g54095.t1 - 0.082 12.9 5.7 0.12 12.3 3.9 1.3 1 1 0 1 1 1 0 Fez1 | Ref_seq=scaffold1198_contigs=3, transcript_loc=scaffold1198_contigs=3:19270-19736 Augustus predicted protein sequence Tobacco scaffold1198_contigs=3~19270-19736 Troponin-I_N PF11636.3 g25150.t1 - 0.078 12.6 2.7 0.14 11.8 1.9 1.4 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:161528-161845 Augustus predicted protein sequence Tobacco scaffold687_contigs=8~161528-161845 GVQW PF13900.1 g83129.t1 - 4.4 7.3 5.7 8.3 6.4 4 1.5 1 1 0 1 1 1 0 Putative binding domain | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:137238-137453 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~137238-137453 Neisseria_TspB PF05616.8 g124415.t1 - 0.7 8.1 5.6 0.71 8.1 3.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2168159-2168659 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2168159-2168659 PLATZ PF04640.9 g40299.t1 - 0.0000042 26.8 0 0.0000069 26.1 0 1.3 1 0 0 1 1 1 1 PLATZ transcription factor | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:62665-64544 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~62665-64544 GCOM2 PF15328.1 g85639.t1 - 0.0055 16.4 3.7 0.0061 16.3 2.6 1.1 1 0 0 1 1 1 1 Putative GRINL1B complex locus protein 2 | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:232178-232816 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~232178-232816 Muted PF14942.1 g126383.t1 - 0.0026 17.6 1.8 0.0029 17.4 1.3 1 1 0 0 1 1 1 1 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:93285-93518 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~93285-93518 Not3 PF04065.10 g69866.t1 - 0.0043 16.3 8.6 0.0058 15.9 6 1.1 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:362700-363945 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~362700-363945 NAM-associated PF14303.1 g32772.t1 - 0.037 14.3 5.9 0.077 13.3 4.1 1.7 1 1 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:3047-3754 Augustus predicted protein sequence Tobacco scaffold818_contigs=2~3047-3754 PRCC PF10253.4 g74279.t1 - 0.066 13.8 0 0.1 13.3 0 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:61142-61405 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~61142-61405 Hyd_WA PF06462.7 g13208.t1 - 0.013 15 0.9 13 5.5 0.1 3.3 3 0 0 3 3 3 0 Propeller | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:73427-73642 Augustus predicted protein sequence Tobacco scaffold443_contigs=11~73427-73642 Retrotrans_gag PF03732.12 g119425.t1 - 0.046 13.7 0.6 0.056 13.5 0.4 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:21179-21517 Augustus predicted protein sequence Tobacco scaffold2712_contigs=5~21179-21517 DMAP1 PF05499.7 g10513.t1 - 0.027 14 0 0.036 13.6 0 1.2 1 0 0 1 1 1 0 DNA methyltransferase 1-associated protein 1 (DMAP1) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:173863-174588 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~173863-174588 FoP_duplication PF13865.1 g11416.t1 - 1.8 9 6 2.5 8.6 4.2 1.2 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:224052-224438 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~224052-224438 RPW8 PF05659.6 g2072.t1 - 0.066 12.7 0.4 0.08 12.4 0.3 1.3 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:108540-109143 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~108540-109143 ECH_C PF13766.1 g37787.t1 - 0.0052 16.9 0.1 0.006 16.7 0 1 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:16919-17556 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~16919-17556 ATHILA PF03078.10 g62726.t1 - 0.00000014 30.4 0 0.0041 15.7 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1355_contigs=6, transcript_loc=scaffold1355_contigs=6:33-299 Augustus predicted protein sequence Tobacco scaffold1355_contigs=6~33-299 P53 PF00870.13 g69243.t1 - 0.13 11.8 0.1 0.13 11.8 0 1.1 1 0 0 1 1 1 0 P53 DNA-binding domain | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:50788-50988 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~50788-50988 DUF1788 PF08747.6 g3170.t1 - 0.03 14.2 0.1 0.04 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:145696-146606 Augustus predicted protein sequence Tobacco scaffold227_contigs=2~145696-146606 DUF2028 PF09667.5 g124155.t1 - 0.067 13.3 0.8 0.14 12.2 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2028) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1451925-1454215 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1451925-1454215 FecR PF04773.8 g55383.t1 - 0.055 13.7 0.1 0.078 13.2 0.1 1.2 1 0 0 1 1 1 0 FecR protein | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:261762-262180 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~261762-262180 NST1 PF13945.1 g1834.t1 - 0.11 12.5 3.4 0.12 12.4 2.3 1.2 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:11977-12403 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~11977-12403 NAM-associated PF14303.1 g6578.t1 - 0.0003 21.1 9.6 0.00037 20.8 6.7 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:73260-73568 Augustus predicted protein sequence Tobacco scaffold300_contigs=5~73260-73568 FH2 PF02181.18 g90284.t1 - 0.055 12.3 0.1 0.066 12 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:502400-502777 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~502400-502777 FluMu_gp41 PF10109.4 g75443.t1 - 0.061 13.2 0 0.083 12.8 0 1.2 1 0 0 1 1 1 0 Mu-like prophage FluMu protein gp41 | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:405276-406015 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~405276-406015 Ribosomal_S16 PF00886.14 g59107.t1 - 0.099 12.3 0.1 0.15 11.8 0.1 1.6 1 1 0 1 1 1 0 Ribosomal protein S16 | Ref_seq=scaffold1280_contigs=6, transcript_loc=scaffold1280_contigs=6:88956-89276 Augustus predicted protein sequence Tobacco scaffold1280_contigs=6~88956-89276 Activator_LAG-3 PF11498.3 g115676.t1 - 0.077 11.7 0 0.082 11.6 0 1 1 0 0 1 1 1 0 Transcriptional activator LAG-3 | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:31833-32201 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~31833-32201 HOOK PF05622.7 g81885.t1 - 0.0097 13.7 0.1 0.011 13.5 0.1 1 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:5473-5748 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~5473-5748 Inhibitor_I29 PF08246.7 g128850.t1 - 0.089 13 0.1 0.2 11.9 0 1.6 1 0 0 1 1 1 0 Cathepsin propeptide inhibitor domain (I29) | Ref_seq=scaffold2894_contigs=1, transcript_loc=scaffold2894_contigs=1:1784-3132 Augustus predicted protein sequence Tobacco scaffold2894_contigs=1~1784-3132 Rootletin PF15035.1 g76995.t1 - 0.17 11.8 6.9 0.23 11.4 4.8 1.4 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:45239-45784 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~45239-45784 DapB_C PF05173.9 g34450.t1 - 0.022 14.5 0 0.027 14.2 0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, C-terminus | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:49398-49880 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~49398-49880 zf-TRM13_CCCH PF11722.3 g98601.t1 - 0.012 14.9 0.3 0.13 11.6 0.3 2.2 2 0 0 2 2 2 0 CCCH zinc finger in TRM13 protein | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:305707-305979 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~305707-305979 DUF3673 PF12425.3 g49965.t1 - 0.12 12.2 0.3 13 5.7 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3673) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:460206-460526 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~460206-460526 SPA PF08616.5 g62832.t1 - 0.058 13.1 0.1 0.061 13 0 1.1 1 0 0 1 1 1 0 Stabilization of polarity axis | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:483793-484130 Augustus predicted protein sequence Tobacco scaffold1357_contigs=25~483793-484130 Prefoldin_3 PF13758.1 g56735.t1 - 0.065 13 1.8 2.9 7.7 0.1 2.7 3 0 0 3 3 3 0 Prefoldin subunit | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:739295-739979 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~739295-739979 DUF4627 PF15425.1 g104883.t1 - 0.00024 20.6 0.1 0.098 12.1 0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4627) | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:20773-21268 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~20773-21268 NESP55 PF06390.7 g51540.t1 - 2.3 7.5 5.9 0.16 11.3 0.4 1.7 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:47341-49729 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~47341-49729 DUF3942 PF13078.1 g97812.t1 - 0.02 14.9 0 0.026 14.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3942) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:212291-212662 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~212291-212662 ATHILA PF03078.10 g82618.t1 - 0.00000041 28.9 0 0.00000071 28.1 0 1.3 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:25666-26811 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~25666-26811 ANF_receptor PF01094.23 g94608.t1 - 0.0023 16.8 0 0.0026 16.6 0 1 1 0 0 1 1 1 1 Receptor family ligand binding region | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:168071-168481 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~168071-168481 NPDC1 PF06809.6 g64265.t1 - 0.12 11.1 0.7 0.18 10.5 0.4 1.4 1 1 0 1 1 1 0 Neural proliferation differentiation control-1 protein (NPDC1) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:316411-316689 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~316411-316689 eIF3g PF12353.3 g27059.t1 - 0.036 13.9 0.3 0.057 13.3 0.2 1.3 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:835491-838922 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~835491-838922 FA PF08736.6 g37308.t1 - 0.073 12.8 1.3 0.29 10.9 0.1 2.1 2 1 0 2 2 2 0 FERM adjacent (FA) | Ref_seq=scaffold920_contigs=3, transcript_loc=scaffold920_contigs=3:84228-84699 Augustus predicted protein sequence Tobacco scaffold920_contigs=3~84228-84699 Pilus_PilP PF11356.3 g77615.t1 - 8.7 6.6 8.6 22 5.3 0.7 2.7 1 1 0 2 2 2 0 Type IV pilus biogenesis | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:179681-181750 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~179681-181750 Selenoprotein_S PF06936.6 g40280.t1 - 0.063 12.8 3.1 0.066 12.7 2.1 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:16353-16744 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~16353-16744 Thioesterase PF00975.15 g24439.t1 - 0.2 11.8 1.8 0.23 11.6 1.3 1.3 1 1 0 1 1 1 0 Thioesterase domain | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:201353-201817 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~201353-201817 RRM_DME PF15628.1 g107542.t1 - 0.12 12.1 0.1 1.1 9 0 2.1 1 1 1 2 2 2 0 RRM in Demeter | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:284463-286116 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~284463-286116 IFP_35_N PF07334.8 g52134.t1 - 0.05 13.5 1.7 0.18 11.7 1.2 2 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:490198-490917 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~490198-490917 tRNA-synt_1c PF00749.16 g15800.t1 - 0.034 12.7 1 0.035 12.7 0.7 1 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:338232-338558 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~338232-338558 DUF1347 PF07079.6 g37805.t1 - 0.013 13.7 0 0.013 13.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:48842-49258 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~48842-49258 Somatostatin PF03002.10 g125098.t1 - 0.11 12 0.2 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 Somatostatin/Cortistatin family | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:89402-89927 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~89402-89927 CbtB PF09489.5 g33602.t1 - 2.3 8.1 4.7 3.3 7.6 3.2 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:181250-182332 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~181250-182332 Retrotrans_gag PF03732.12 g60108.t1 - 0.041 13.9 0 0.055 13.5 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:33742-33981 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~33742-33981 NinB PF05772.7 g89291.t1 - 0.089 12.4 0 0.11 12.1 0 1.3 1 0 0 1 1 1 0 NinB protein | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:233884-234931 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~233884-234931 zf-CCHC PF00098.18 g32863.t1 - 0.00022 21 0.6 0.00035 20.3 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:17043-17590 Augustus predicted protein sequence Tobacco scaffold823_contigs=8~17043-17590 DUF2857 PF11198.3 g76656.t1 - 0.0078 15.7 0 0.0092 15.5 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF2857) | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:11510-13825 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~11510-13825 DUF1515 PF07439.6 g97352.t1 - 0.0002 21.1 0.6 0.00036 20.3 0.2 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1515) | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:105238-105679 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~105238-105679 RF-1 PF00472.15 g26580.t1 - 0.15 11.8 3.8 1.2 8.9 1.5 2.4 2 0 0 2 2 2 0 RF-1 domain | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:177838-179222 Augustus predicted protein sequence Tobacco scaffold717_contigs=7~177838-179222 zf-CCHC PF00098.18 g59656.t1 - 0.0032 17.3 0.9 0.0073 16.1 0.6 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:37041-38246 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~37041-38246 ASFV_J13L PF05568.6 g59551.t1 - 0.1 12.1 0.8 0.18 11.3 0.6 1.3 1 0 0 1 1 1 0 African swine fever virus J13L protein | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:28884-29971 Augustus predicted protein sequence Tobacco scaffold1293_contigs=3~28884-29971 CDC45 PF02724.9 g13852.t1 - 0.2 9.6 0.3 0.24 9.3 0.2 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:195264-195839 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~195264-195839 Exo_endo_phos PF03372.18 g67665.t1 - 0.045 13.6 0 0.058 13.3 0 1.1 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family | Ref_seq=scaffold1453_contigs=3, transcript_loc=scaffold1453_contigs=3:50446-51848 Augustus predicted protein sequence Tobacco scaffold1453_contigs=3~50446-51848 DUF4219 PF13961.1 g97778.t1 - 0.0000062 25.4 0.2 0.0000091 24.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:136390-136590 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~136390-136590 DUF2493 PF10686.4 g59785.t1 - 0.079 12.5 0 0.38 10.3 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2493) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:187090-188938 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~187090-188938 YicC_N PF03755.8 g118419.t1 - 0.048 13.5 0 0.057 13.3 0 1.1 1 0 0 1 1 1 0 YicC-like family, N-terminal region | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:26660-27653 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~26660-27653 DUF1563 PF07599.6 g38213.t1 - 0.1 12.4 0 0.15 11.9 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1563) | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:165946-166544 Augustus predicted protein sequence Tobacco scaffold931_contigs=12~165946-166544 Fmp27 PF10344.4 g46795.t1 - 0.031 11.9 0.3 0.037 11.7 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial protein from FMP27 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:157553-159881 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~157553-159881 DUF3884 PF13024.1 g113626.t1 - 0.2 11 0.6 0.28 10.6 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:254963-255292 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~254963-255292 ATHILA PF03078.10 g112378.t1 - 0.0086 14.7 0 0.0098 14.5 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:36219-40683 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~36219-40683 BTV_NS2 PF04514.7 g20745.t1 - 0.024 13.5 4.7 0.035 12.9 3.3 1.4 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:173017-176270 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~173017-176270 2C_adapt PF08793.5 g101311.t1 - 0.076 12.9 1.5 0.15 11.9 1 1.4 1 0 0 1 1 1 0 2-cysteine adaptor domain | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:1-1237 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~1-1237 ALIX_LYPXL_bnd PF13949.1 g87539.t1 - 0.019 13.9 0.3 0.019 13.9 0.2 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold1884_contigs=4, transcript_loc=scaffold1884_contigs=4:19665-19865 Augustus predicted protein sequence Tobacco scaffold1884_contigs=4~19665-19865 Mt_ATP-synt_B PF05405.9 g71604.t1 - 0.034 13.5 0.5 0.036 13.5 0.3 1.1 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:112231-112578 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~112231-112578 Vir_act_alpha_C PF10400.4 g41126.t1 - 0.042 14.2 0.2 0.042 14.2 0.1 1.9 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:714125-714523 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~714125-714523 SpoVA PF03862.8 g28376.t1 - 0.12 12.5 0 0.15 12.1 0 1.1 1 0 0 1 1 1 0 SpoVA protein | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:228142-229303 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~228142-229303 THDPS_N_2 PF14805.1 g110372.t1 - 0.0085 15.9 0 4.3 7.2 0 2.2 2 0 0 2 2 2 2 Tetrahydrodipicolinate N-succinyltransferase N-terminal | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:8743-9536 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~8743-9536 DUF4140 PF13600.1 g42220.t1 - 0.009 16.4 1.5 0.017 15.5 1 1.5 1 1 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:202855-203883 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~202855-203883 HALZ PF02183.13 g58976.t1 - 0.046 13.4 1.2 0.11 12.2 0.2 2 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:317328-318234 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~317328-318234 DHODB_Fe-S_bind PF10418.4 g34255.t1 - 0.065 12.7 0.1 0.097 12.1 0 1.2 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:109965-110480 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~109965-110480 DUF1228 PF06779.9 g61168.t1 - 0.042 13.8 0 0.046 13.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1228) | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:271709-272023 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~271709-272023 ATHILA PF03078.10 g117180.t1 - 0.041 12.4 0.2 0.041 12.4 0.1 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:99586-99900 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~99586-99900 DUF2929 PF11151.3 g79174.t1 - 1.2 9.2 6.4 59 3.8 0.2 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF2929) | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:104367-104738 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~104367-104738 Prefoldin PF02996.12 g14747.t1 - 0.0008 19 0.6 0.0011 18.5 0.4 1.2 1 0 0 1 1 1 1 Prefoldin subunit | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:125706-126210 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~125706-126210 Med18 PF09637.5 g55952.t1 - 0.014 14.9 0.1 0.016 14.7 0 1 1 0 0 1 1 1 0 Med18 protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:203934-204452 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~203934-204452 Occludin_ELL PF07303.8 g83802.t1 - 0.051 14.3 3.6 9.7 6.9 0 2.8 2 1 1 3 3 3 0 Occludin homology domain | Ref_seq=scaffold1804_contigs=3, transcript_loc=scaffold1804_contigs=3:115241-115915 Augustus predicted protein sequence Tobacco scaffold1804_contigs=3~115241-115915 Myc_N PF01056.13 g19902.t1 - 0.19 10.8 3.3 0.22 10.6 2.3 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:2187-2594 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~2187-2594 Pentapeptide_4 PF13599.1 g4711.t1 - 0.061 13.1 0 0.081 12.7 0 1.4 1 1 0 1 1 1 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:233-1132 Augustus predicted protein sequence Tobacco scaffold261_contigs=2~233-1132 DUF1053 PF06327.9 g15139.t1 - 0.073 13.4 1.3 0.13 12.6 0.9 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1053) | Ref_seq=scaffold492_contigs=1, transcript_loc=scaffold492_contigs=1:23061-23531 Augustus predicted protein sequence Tobacco scaffold492_contigs=1~23061-23531 Cep57_MT_bd PF06657.8 g36993.t1 - 0.15 12 5.2 1.8 8.5 0.7 2.1 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:64510-64719 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~64510-64719 MscS_porin PF12795.2 g58566.t1 - 0.0025 17.1 0.9 0.0032 16.8 0.6 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:177862-178179 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~177862-178179 DUF3484 PF11983.3 g124804.t1 - 0.058 14.2 4.1 0.09 13.6 0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF3484) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:190518-191521 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~190518-191521 NAGLU_N PF12971.2 g26990.t1 - 0.15 11.7 0.1 1.3 8.6 0 2.1 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:657332-657697 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~657332-657697 DUF4610 PF15384.1 g19023.t1 - 0.091 12.2 1.5 0.17 11.3 1.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4610) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:114234-115730 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~114234-115730 SMN PF06003.7 g24415.t1 - 0.028 13.5 0.4 0.035 13.2 0.3 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:148136-148804 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~148136-148804 AAA_7 PF12775.2 g55933.t1 - 0.032 13.3 0 0.037 13 0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:165467-166562 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~165467-166562 DUF755 PF05501.6 g68710.t1 - 0.096 12.7 5.6 0.12 12.3 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:887770-888075 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~887770-888075 PP2 PF14299.1 g13471.t1 - 0.0095 15.3 0.2 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 Phloem protein 2 | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:109792-110415 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~109792-110415 DDE_Tnp_1_2 PF13586.1 g37029.t1 - 0.024 14.8 0 0.031 14.4 0 1.2 1 0 0 1 1 1 0 Transposase DDE domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:165086-166020 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~165086-166020 TraV PF09676.5 g92595.t1 - 0.044 14.4 0.4 0.056 14.1 0.3 1.2 1 0 0 1 1 1 0 Type IV conjugative transfer system lipoprotein (TraV) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:86711-87136 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~86711-87136 DUF745 PF05335.8 g1972.t1 - 0.0054 16.2 4.2 0.0097 15.4 2.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF745) | Ref_seq=scaffold198_contigs=2, transcript_loc=scaffold198_contigs=2:9576-10034 Augustus predicted protein sequence Tobacco scaffold198_contigs=2~9576-10034 RVT_3 PF13456.1 g64458.t1 - 0.0039 16.9 0 0.0049 16.6 0 1.3 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:100582-103084 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~100582-103084 Uroplakin_II PF07353.7 g76437.t1 - 0.057 12.7 0 0.057 12.7 0 1.2 1 0 0 1 1 1 0 Uroplakin II | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:292495-292833 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~292495-292833 Cuticle_3 PF11018.3 g129542.t1 - 0.023 14.8 6.2 0.029 14.5 4.3 1.2 1 0 0 1 1 1 0 Pupal cuticle protein C1 | Ref_seq=scaffold2976_contigs=1, transcript_loc=scaffold2976_contigs=1:8311-8736 Augustus predicted protein sequence Tobacco scaffold2976_contigs=1~8311-8736 RVT_3 PF13456.1 g117690.t1 - 0.00035 20.3 0 0.00073 19.2 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:10700-11330 Augustus predicted protein sequence Tobacco scaffold2693_contigs=8~10700-11330 Adhesin_P1 PF03257.8 g120491.t1 - 0.081 13.2 0.1 12 6.3 0 2.2 1 1 1 2 2 2 0 Mycoplasma adhesin P1 | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:421940-423309 Augustus predicted protein sequence Tobacco scaffold2724_contigs=11~421940-423309 ATHILA PF03078.10 g122549.t1 - 0.0000015 27 0.1 0.0000049 25.3 0 1.6 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:225999-226470 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~225999-226470 AA_permease PF00324.16 g116052.t1 - 0.0087 14.4 0.1 0.0096 14.2 0 1.3 1 1 0 1 1 1 1 Amino acid permease | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:543888-544193 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~543888-544193 PBP1_TM PF14812.1 g7519.t1 - 0.14 12.4 1.9 0.2 11.9 1.3 1.3 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:277377-277700 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~277377-277700 PAXIP1_C PF15364.1 g46206.t1 - 0.86 9.5 4.9 0.48 10.3 2.3 1.5 1 1 0 1 1 1 0 PAXIP1-associated-protein-1 C term PTIP binding protein | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:75570-76086 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~75570-76086 Utp21 PF04192.7 g9863.t1 - 0.097 11.7 0 0.11 11.6 0 1.2 1 0 0 1 1 1 0 Utp21 specific WD40 associated putative domain | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:204205-205357 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~204205-205357 Mito_fiss_reg PF05308.6 g87875.t1 - 0.047 13 1.9 0.048 13 1.3 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1901_contigs=10, transcript_loc=scaffold1901_contigs=10:71770-72009 Augustus predicted protein sequence Tobacco scaffold1901_contigs=10~71770-72009 ASD1 PF08688.5 g85029.t1 - 0.033 13.9 1.4 0.037 13.8 1 1 1 0 0 1 1 1 0 Apx/Shroom domain ASD1 | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:58498-58758 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~58498-58758 Raptor_N PF14538.1 g112358.t1 - 0.12 12.2 0 0.17 11.7 0 1.2 1 0 0 1 1 1 0 Raptor N-terminal CASPase like domain | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:181721-182126 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~181721-182126 YolD PF08863.5 g110227.t1 - 0.0026 17.5 0 2.2 8.1 0 2.1 2 0 0 2 2 2 2 YolD-like protein | Ref_seq=scaffold2533_contigs=2, transcript_loc=scaffold2533_contigs=2:1694-2345 Augustus predicted protein sequence Tobacco scaffold2533_contigs=2~1694-2345 DUF1912 PF08930.5 g126027.t1 - 0.071 13.2 0.1 0.09 12.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1912) | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:100572-100832 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~100572-100832 DUF1664 PF07889.7 g39894.t1 - 0.013 15.3 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:100034-100925 Augustus predicted protein sequence Tobacco scaffold962_contigs=5~100034-100925 DMPK_coil PF08826.5 g31932.t1 - 0.019 14.8 3.4 0.019 14.8 2.3 1.6 2 0 0 2 2 2 0 DMPK coiled coil domain like | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:232846-235699 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~232846-235699 RVT_3 PF13456.1 g97992.t1 - 0.05 13.3 0 0.1 12.3 0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:6409-7179 Augustus predicted protein sequence Tobacco scaffold2148_contigs=3~6409-7179 zf-BED PF02892.10 g77569.t1 - 0.011 15.4 4.3 0.03 14 1.1 2.3 2 0 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold1632_contigs=6, transcript_loc=scaffold1632_contigs=6:43592-43885 Augustus predicted protein sequence Tobacco scaffold1632_contigs=6~43592-43885 PPO1_DWL PF12142.3 g35178.t1 - 0.079 12.4 0.1 0.17 11.4 0 1.6 1 0 0 1 1 1 0 Polyphenol oxidase middle domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:155512-155919 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~155512-155919 DBD_Tnp_Mut PF03108.10 g100543.t1 - 0.0000035 26.5 0.1 0.0000073 25.4 0 1.6 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:154094-156339 Augustus predicted protein sequence Tobacco scaffold2197_contigs=7~154094-156339 EBV-NA3 PF05009.7 g943.t1 - 0.2 10.8 1.7 0.21 10.8 1.2 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold86_contigs=2, transcript_loc=scaffold86_contigs=2:1031-1258 Augustus predicted protein sequence Tobacco scaffold86_contigs=2~1031-1258 HR1 PF02185.11 g48779.t1 - 0.03 14 2.3 0.042 13.5 1.6 1.2 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:332212-333687 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~332212-333687 zf-C2HC_2 PF13913.1 g68052.t1 - 4.2 7.1 6.2 18 5.1 0.9 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:8911-9210 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~8911-9210 FBD PF08387.5 g22258.t1 - 0.055 12.9 0 0.088 12.2 0 1.3 1 0 0 1 1 1 0 FBD | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:97608-98433 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~97608-98433 TLD PF07534.11 g93459.t1 - 0.094 12.6 0 1.2 9.1 0 2.2 2 0 0 2 2 2 0 TLD | Ref_seq=scaffold2019_contigs=3, transcript_loc=scaffold2019_contigs=3:1-1981 Augustus predicted protein sequence Tobacco scaffold2019_contigs=3~1-1981 NADHdh-2_N PF12155.3 g94154.t1 - 0.035 14.2 0.1 0.052 13.7 0.1 1.3 1 0 0 1 1 1 0 NADH dehydrogenase subunit 2 N-terminal | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:51112-51624 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~51112-51624 CYSTM PF12734.2 g88565.t1 - 0.086 12.9 0.1 0.15 12.1 0 1.3 1 0 0 1 1 1 0 Cysteine-rich TM module stress tolerance | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:42345-43034 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~42345-43034 V_ATPase_I PF01496.14 g36164.t1 - 0.032 12.1 3.2 0.037 11.9 2.2 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:402398-403426 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~402398-403426 Syntaxin_2 PF14523.1 g83591.t1 - 0.13 12.3 0 0.15 12 0 1.1 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold1797_contigs=4, transcript_loc=scaffold1797_contigs=4:51868-52155 Augustus predicted protein sequence Tobacco scaffold1797_contigs=4~51868-52155 DUF1985 PF09331.6 g113185.t1 - 0.000000013 34.7 0 0.000000018 34.2 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2623_contigs=9, transcript_loc=scaffold2623_contigs=9:71995-73256 Augustus predicted protein sequence Tobacco scaffold2623_contigs=9~71995-73256 FBA_1 PF07734.8 g62094.t1 - 0.00032 20.4 0 0.0004 20.1 0 1.1 1 0 0 1 1 1 1 F-box associated | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:389597-389944 Augustus predicted protein sequence Tobacco scaffold1345_contigs=14~389597-389944 FoP_duplication PF13865.1 g39677.t1 - 2 8.9 7 1.1 9.7 3.6 1.5 2 0 0 2 2 2 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold960_contigs=13, transcript_loc=scaffold960_contigs=13:47510-47800 Augustus predicted protein sequence Tobacco scaffold960_contigs=13~47510-47800 T2SJ PF11612.3 g14545.t1 - 0.13 11.9 0 0.15 11.7 0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein J | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:165695-166336 Augustus predicted protein sequence Tobacco scaffold476_contigs=10~165695-166336 ATP-synt_8 PF00895.15 g48134.t1 - 0.096 12.9 0.1 0.096 12.9 0.1 2 1 1 1 2 2 2 0 ATP synthase protein 8 | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:299594-299878 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~299594-299878 THOC7 PF05615.8 g17726.t1 - 0.032 14.5 2.5 0.038 14.2 1.8 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:46968-47402 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~46968-47402 VanW PF04294.8 g61928.t1 - 0.051 12.7 0.1 0.058 12.5 0 1 1 0 0 1 1 1 0 VanW like protein | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:72929-73311 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~72929-73311 E3_binding PF02817.12 g49147.t1 - 0.09 12.4 1.3 7.2 6.3 0.1 2.5 2 0 0 2 2 2 0 e3 binding domain | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:86505-87155 Augustus predicted protein sequence Tobacco scaffold1113_contigs=8~86505-87155 Myosin_tail_1 PF01576.14 g10408.t1 - 0.023 12.4 5.4 0.029 12.1 3.7 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:301214-303615 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~301214-303615 UvrC_HhH_N PF08459.6 g33928.t1 - 0.054 13 0.3 0.066 12.7 0.2 1.1 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal | Ref_seq=scaffold835_contigs=3, transcript_loc=scaffold835_contigs=3:14776-15982 Augustus predicted protein sequence Tobacco scaffold835_contigs=3~14776-15982 zf-CCHC PF00098.18 g11271.t1 - 0.001 18.9 5.2 0.0016 18.2 3.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:85327-85751 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~85327-85751 DAZAP2 PF11029.3 g100927.t1 - 0.0075 16.7 0.3 0.0088 16.5 0.2 1.1 1 0 0 1 1 1 1 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:356828-357055 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~356828-357055 TMEM141 PF15110.1 g74214.t1 - 0.16 12.2 0.1 0.16 12.2 0.1 2.1 3 0 0 3 3 3 0 TMEM141 protein family | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:776758-777252 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~776758-777252 DUF2421 PF10334.4 g1935.t1 - 0.037 13.6 0.1 0.041 13.5 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2421) | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:36627-38041 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~36627-38041 Rad51 PF08423.6 g52351.t1 - 0.07 12 0 0.26 10.1 0 1.7 1 1 1 2 2 2 0 Rad51 | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:66804-68203 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~66804-68203 DBD_Tnp_Mut PF03108.10 g15138.t1 - 1.9E-009 36.9 1.6 0.000000023 33.4 0.3 2.2 2 0 0 2 2 2 2 MuDR family transposase | Ref_seq=scaffold492_contigs=1, transcript_loc=scaffold492_contigs=1:21135-21821 Augustus predicted protein sequence Tobacco scaffold492_contigs=1~21135-21821 Toxin_32 PF08120.6 g88360.t1 - 3.2 7.4 7.8 0.53 9.9 0.6 2.3 2 0 0 2 2 2 0 Tamulustoxin family | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:73013-73450 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~73013-73450 MRP-L20 PF12824.2 g66975.t1 - 0.01 15.8 1.6 0.01 15.8 1.1 2.5 2 1 1 3 3 3 0 Mitochondrial ribosomal protein subunit L20 | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:249121-250631 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~249121-250631 DUF1359 PF07097.6 g64984.t1 - 0.1 12.6 0.2 15 5.6 0.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1359) | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:155576-155845 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~155576-155845 CDC45 PF02724.9 g70350.t1 - 0.0019 16.3 9.3 0.0021 16.1 6.5 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:333087-334051 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~333087-334051 DUF4219 PF13961.1 g42950.t1 - 0.00038 19.7 0.2 0.00056 19.2 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:7219-7437 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~7219-7437 TilS PF09179.6 g80120.t1 - 0.087 12.8 0.2 0.16 11.9 0.2 1.5 1 0 0 1 1 1 0 TilS substrate binding domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:181867-182834 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~181867-182834 Lpp-LpqN PF10738.4 g100784.t1 - 0.044 13 0 0.072 12.3 0 1.3 1 0 0 1 1 1 0 Probable lipoprotein LpqN | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:2504-5987 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~2504-5987 IFP_35_N PF07334.8 g126933.t1 - 0.16 11.9 1.7 0.4 10.6 1.2 1.7 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:17450-18125 Augustus predicted protein sequence Tobacco scaffold2809_contigs=1~17450-18125 RVT_3 PF13456.1 g62848.t1 - 0.0000043 26.4 0 0.0000062 25.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:563782-564309 Augustus predicted protein sequence Tobacco scaffold1357_contigs=25~563782-564309 NYN_YacP PF05991.6 g93766.t1 - 0.1 12.3 1.1 0.16 11.6 0.8 1.2 1 0 0 1 1 1 0 YacP-like NYN domain | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:8496-9152 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~8496-9152 MukB PF04310.7 g36884.t1 - 0.13 11.5 0 0.14 11.4 0 1.1 1 0 0 1 1 1 0 MukB N-terminal | Ref_seq=scaffold903_contigs=3, transcript_loc=scaffold903_contigs=3:47585-47893 Augustus predicted protein sequence Tobacco scaffold903_contigs=3~47585-47893 Spt5_N PF11942.3 g62297.t1 - 0.013 16 6.6 0.013 16 4.5 1.8 2 0 0 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:380416-382815 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~380416-382815 DUF4157 PF13699.1 g78914.t1 - 0.0088 16.1 6 0.19 11.8 0.5 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4157) | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:21604-23155 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~21604-23155 HCV_NS5a_1b PF08301.8 g70214.t1 - 0.09 13.1 0 0.14 12.5 0 1.3 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a domain 1b | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:72868-73624 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~72868-73624 DUF1469 PF07332.6 g32707.t1 - 0.052 13.2 0.8 0.064 12.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:729268-729597 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~729268-729597 Shisa PF13908.1 g96984.t1 - 0.0042 17.2 0.3 0.0057 16.8 0.2 1.2 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:241416-242336 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~241416-242336 zf-CCHC PF00098.18 g124638.t1 - 0.000022 24.1 0.9 0.000034 23.5 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:178713-179230 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~178713-179230 DMPK_coil PF08826.5 g95367.t1 - 0.00047 19.9 20.6 0.00089 19.1 5.8 3.1 2 1 1 3 3 3 2 DMPK coiled coil domain like | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:310513-310904 Augustus predicted protein sequence Tobacco scaffold2057_contigs=11~310513-310904 NAM-associated PF14303.1 g60988.t1 - 0.000021 24.8 12.3 0.000029 24.4 8.5 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1325_contigs=9, transcript_loc=scaffold1325_contigs=9:170666-171208 Augustus predicted protein sequence Tobacco scaffold1325_contigs=9~170666-171208 HALZ PF02183.13 g66608.t1 - 0.0015 18.1 5.9 0.066 12.9 0.3 2.2 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:218473-218867 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~218473-218867 SBDS_C PF09377.5 g113298.t1 - 0.037 13.7 3.6 0.042 13.5 2.5 1.1 1 0 0 1 1 1 0 SBDS protein C-terminal domain | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:8591-8866 Augustus predicted protein sequence Tobacco scaffold2625_contigs=4~8591-8866 PolyG_pol PF01518.11 g118526.t1 - 0.15 10.4 0 0.16 10.4 0 1.1 1 0 0 1 1 1 0 Sigma NS protein | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:117252-118002 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~117252-118002 Toxin_1 PF00087.16 g126737.t1 - 0.044 14.1 0 0.071 13.4 0 1.3 1 1 0 1 1 1 0 Snake toxin | Ref_seq=scaffold2803_contigs=1, transcript_loc=scaffold2803_contigs=1:60305-61241 Augustus predicted protein sequence Tobacco scaffold2803_contigs=1~60305-61241 Peptidase_S64 PF08192.6 g28681.t1 - 0.18 10 3 0.2 9.9 2.1 1 1 0 0 1 1 1 0 Peptidase family S64 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:49414-49770 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~49414-49770 Antimicrobial12 PF08107.6 g41479.t1 - 0.041 13.4 0.5 0.071 12.6 0.4 1.3 1 0 0 1 1 1 0 Pleurocidin family | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:62219-62494 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~62219-62494 Cortex-I_coil PF09304.5 g36391.t1 - 0.0066 16.4 2.2 0.011 15.7 0.7 1.8 2 0 0 2 2 2 1 Cortexillin I, coiled coil | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:47698-48269 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~47698-48269 Ribosomal_S13_N PF08069.7 g16341.t1 - 0.092 12.5 0.1 0.11 12.3 0 1.2 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:95474-95677 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~95474-95677 CENP-M PF11111.3 g89602.t1 - 0.062 12.5 0 0.08 12.1 0 1.3 1 0 0 1 1 1 0 Centromere protein M (CENP-M) | Ref_seq=scaffold1950_contigs=8, transcript_loc=scaffold1950_contigs=8:184243-186937 Augustus predicted protein sequence Tobacco scaffold1950_contigs=8~184243-186937 CRAL_TRIO_N PF03765.10 g74094.t1 - 0.14 12.2 0.5 0.32 11.1 0.3 1.6 1 0 0 1 1 1 0 CRAL/TRIO, N-terminal domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:515550-516216 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~515550-516216 MCD PF05292.6 g98391.t1 - 0.16 10.6 0 0.2 10.3 0 1.2 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:56471-56905 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~56471-56905 PNRC PF15365.1 g17543.t1 - 0.11 12.5 0 0.18 11.8 0 1.3 1 0 0 1 1 1 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:95779-96415 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~95779-96415 MAGSP PF03082.9 g103184.t1 - 0.046 13.1 0 0.053 12.9 0 1 1 0 0 1 1 1 0 Male accessory gland secretory protein | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:99128-99433 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~99128-99433 DUF1156 PF06634.7 g83826.t1 - 0.023 14.4 0.1 9.1 6.1 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1156) | Ref_seq=scaffold1805_contigs=6, transcript_loc=scaffold1805_contigs=6:38461-40091 Augustus predicted protein sequence Tobacco scaffold1805_contigs=6~38461-40091 Spt4 PF06093.8 g49291.t1 - 0.072 12.9 0.1 0.096 12.5 0.1 1.3 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger | Ref_seq=scaffold1125_contigs=3, transcript_loc=scaffold1125_contigs=3:4810-5489 Augustus predicted protein sequence Tobacco scaffold1125_contigs=3~4810-5489 DCA16 PF15349.1 g98566.t1 - 0.013 14.9 0.1 0.014 14.7 0.1 1 1 0 0 1 1 1 0 DDB1- and CUL4-associated factor 16 | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:206339-206569 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~206339-206569 bZIP_2 PF07716.10 g110389.t1 - 0.059 13.1 0.9 0.1 12.4 0.6 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:50021-50254 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~50021-50254 DBD_Tnp_Mut PF03108.10 g27662.t1 - 0.000000058 32.1 0.1 0.000000097 31.4 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:67169-68234 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~67169-68234 DUF4248 PF14053.1 g73855.t1 - 0.0033 16.9 0.1 0.0042 16.6 0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4248) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:53216-53428 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~53216-53428 zf-CCHC PF00098.18 g16969.t1 - 0.0021 17.8 0.7 0.0031 17.3 0.5 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:170640-171245 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~170640-171245 zf-CCHC PF00098.18 g54334.t1 - 0.086 12.8 1.9 0.13 12.2 1.3 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1206_contigs=3, transcript_loc=scaffold1206_contigs=3:29270-29622 Augustus predicted protein sequence Tobacco scaffold1206_contigs=3~29270-29622 DUF573 PF04504.9 g22118.t1 - 0.29 11.4 5.3 0.87 9.8 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function, DUF573 | Ref_seq=scaffold613_contigs=1, transcript_loc=scaffold613_contigs=1:21350-21760 Augustus predicted protein sequence Tobacco scaffold613_contigs=1~21350-21760 ATP-synt_E_2 PF08112.6 g90491.t1 - 0.15 12.1 0 0.21 11.6 0 1.2 1 0 0 1 1 1 0 ATP synthase epsilon subunit | Ref_seq=scaffold1962_contigs=17, transcript_loc=scaffold1962_contigs=17:870457-870992 Augustus predicted protein sequence Tobacco scaffold1962_contigs=17~870457-870992 Peroxin-3 PF04882.7 g115059.t1 - 0.13 10.9 1.2 0.15 10.7 0.8 1.1 1 0 0 1 1 1 0 Peroxin-3 | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:330655-331074 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~330655-331074 Peptidase_A6 PF01829.11 g44770.t1 - 0.0021 17.1 0.1 0.004 16.2 0 1.4 1 0 0 1 1 1 1 Peptidase A6 family | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:57215-58763 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~57215-58763 UPF0184 PF03670.8 g58057.t1 - 0.019 15 1.7 0.029 14.5 1.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:232842-233108 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~232842-233108 Herpes_US12 PF05363.7 g51128.t1 - 0.012 16.1 0 0.028 14.9 0 1.7 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:3987-5108 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~3987-5108 SWIM PF04434.12 g28822.t1 - 0.026 14 0.1 0.045 13.2 0 1.4 1 0 0 1 1 1 0 SWIM zinc finger | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:361769-365339 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~361769-365339 Dicty_spore_N PF04562.7 g3862.t1 - 0.043 14 0 0.064 13.5 0 1.2 1 0 0 1 1 1 0 Dictyostelium spore coat protein, N terminus | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:14077-15675 Augustus predicted protein sequence Tobacco scaffold245_contigs=3~14077-15675 DMPK_coil PF08826.5 g29344.t1 - 0.087 12.7 0.8 0.11 12.3 0.6 1.2 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:266426-266875 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~266426-266875 CENP-B_dimeris PF09026.5 g61602.t1 - 0.43 10.8 20.7 0.8 9.9 14.4 1.4 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1336_contigs=9, transcript_loc=scaffold1336_contigs=9:8428-8895 Augustus predicted protein sequence Tobacco scaffold1336_contigs=9~8428-8895 DUF605 PF04652.11 g29231.t1 - 9.2 5.5 10.7 9.3 5.5 7.4 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:31214-31749 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~31214-31749 DHC_N1 PF08385.7 g73029.t1 - 0.03 12.7 0 0.039 12.3 0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:90971-91607 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~90971-91607 Ribosomal_S28e PF01200.13 g15126.t1 - 0.0082 15.8 0.7 0.016 14.9 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S28e | Ref_seq=scaffold491_contigs=6, transcript_loc=scaffold491_contigs=6:55590-56998 Augustus predicted protein sequence Tobacco scaffold491_contigs=6~55590-56998 DUF2509 PF10713.4 g94539.t1 - 0.086 12.5 0 0.12 12.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2509) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:11900-12520 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~11900-12520 SOG2 PF10428.4 g51421.t1 - 2.2 6.8 6 2.7 6.5 4.2 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold1154_contigs=1, transcript_loc=scaffold1154_contigs=1:16058-17250 Augustus predicted protein sequence Tobacco scaffold1154_contigs=1~16058-17250 Fer4_19 PF06902.6 g47050.t1 - 0.00065 19.4 0.1 0.00079 19.2 0.1 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster | Ref_seq=scaffold1084_contigs=1, transcript_loc=scaffold1084_contigs=1:25743-26055 Augustus predicted protein sequence Tobacco scaffold1084_contigs=1~25743-26055 SOG2 PF10428.4 g35132.t1 - 0.096 11.3 0.1 0.12 11 0.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:92548-92904 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~92548-92904 DUF4408 PF14364.1 g64332.t1 - 0.45 10.1 3.6 1.1 8.8 2.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4408) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:34949-35359 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~34949-35359 Tropomyosin PF00261.15 g40882.t1 - 0.0055 15.8 1.1 0.0058 15.7 0.8 1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:70470-70676 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~70470-70676 PLATZ PF04640.9 g130377.t1 - 0.087 13 0.3 0.22 11.7 0 1.7 2 0 0 2 2 2 0 PLATZ transcription factor | Ref_seq=scaffold4230_contigs=1, transcript_loc=scaffold4230_contigs=1:655-954 Augustus predicted protein sequence Tobacco scaffold4230_contigs=1~655-954 Leucyl-specific PF14795.1 g33012.t1 - 0.075 12.8 0.2 0.15 11.9 0 1.5 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:170759-171130 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~170759-171130 DUF4322 PF14210.1 g70827.t1 - 0.12 11.8 0 0.17 11.3 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4322) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:254477-254797 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~254477-254797 PI31_Prot_C PF08577.6 g67274.t1 - 1.7 9.3 5.3 2.6 8.7 3.7 1.5 1 1 0 1 1 1 0 PI31 proteasome regulator | Ref_seq=scaffold1446_contigs=1, transcript_loc=scaffold1446_contigs=1:30772-30990 Augustus predicted protein sequence Tobacco scaffold1446_contigs=1~30772-30990 FA_desaturase PF00487.19 g56025.t1 - 0.019 14.4 2.2 0.019 14.4 1.5 1.2 1 0 0 1 1 1 0 Fatty acid desaturase | Ref_seq=scaffold1239_contigs=6, transcript_loc=scaffold1239_contigs=6:53083-53648 Augustus predicted protein sequence Tobacco scaffold1239_contigs=6~53083-53648 zf-CCHC_4 PF14392.1 g47866.t1 - 0.008 15.8 0.6 0.018 14.7 0.4 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:412762-413040 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~412762-413040 Spidroin_MaSp PF11260.3 g110334.t1 - 1.3 9.1 5.4 0.36 10.9 1.7 1.5 1 1 0 2 2 2 0 Major ampullate spidroin 1 and 2 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:345414-345695 Augustus predicted protein sequence Tobacco scaffold2538_contigs=14~345414-345695 YdjO PF14169.1 g5352.t1 - 0.0078 15.6 0.1 0.019 14.3 0 1.6 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:81980-82945 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~81980-82945 DUF1182 PF06681.8 g79934.t1 - 0.077 12.1 1.3 0.11 11.6 0.5 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1182) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:281557-281841 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~281557-281841 ApbE PF02424.10 g24602.t1 - 0.017 14.4 0 0.02 14.1 0 1 1 0 0 1 1 1 0 ApbE family | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:88111-88392 Augustus predicted protein sequence Tobacco scaffold674_contigs=5~88111-88392 CAF-1_p150 PF11600.3 g27807.t1 - 0.0000042 26.3 29 0.0000046 26.1 20.1 1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:332707-333105 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~332707-333105 AflR PF08493.5 g14293.t1 - 2.9 6.8 4.9 3.6 6.5 3.4 1.2 1 0 0 1 1 1 0 Aflatoxin regulatory protein | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:106142-106507 Augustus predicted protein sequence Tobacco scaffold469_contigs=1~106142-106507 Snapin_Pallidin PF14712.1 g123499.t1 - 0.059 13.6 0.8 0.11 12.8 0 1.8 2 0 0 2 2 2 0 Snapin/Pallidin | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:68275-68838 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~68275-68838 FH2 PF02181.18 g45448.t1 - 0.0038 16.1 0.3 0.0045 15.9 0.2 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:452742-453146 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~452742-453146 Ustilago_mating PF05722.7 g12318.t1 - 0.13 11.5 5.3 0.21 10.8 3.7 1.4 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:523681-524436 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~523681-524436 Sars6 PF12133.3 g19969.t1 - 0.28 10.8 0.1 0.28 10.8 0.1 2.4 1 1 1 2 2 2 0 Open reading frame 6 from SARS coronavirus | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:144104-144539 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~144104-144539 YusW PF14039.1 g88541.t1 - 0.078 13.2 0 0.095 12.9 0 1.2 1 0 0 1 1 1 0 YusW-like protein | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:1358-3196 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~1358-3196 CDC45 PF02724.9 g121488.t1 - 2.9 5.8 18.5 3.5 5.5 12.8 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1448412-1451561 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1448412-1451561 Selenoprotein_S PF06936.6 g22673.t1 - 0.43 10.1 4.8 0.55 9.7 3.3 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:101219-101613 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~101219-101613 DUF972 PF06156.8 g23695.t1 - 1.1 9.5 3.9 1.2 9.5 1.2 2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:438054-440032 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~438054-440032 DUF4248 PF14053.1 g49877.t1 - 0.12 11.9 0 0.24 11 0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:299321-299599 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~299321-299599 ATHILA PF03078.10 g79143.t1 - 0.00011 20.9 0 0.00011 20.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1688_contigs=3, transcript_loc=scaffold1688_contigs=3:41841-42065 Augustus predicted protein sequence Tobacco scaffold1688_contigs=3~41841-42065 Sigma70_ner PF04546.8 g2857.t1 - 1.7 8.1 9.6 0.23 11 2.5 2 2 0 0 2 2 2 0 Sigma-70, non-essential region | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:142140-144831 Augustus predicted protein sequence Tobacco scaffold219_contigs=6~142140-144831 DUF2809 PF10990.3 g124222.t1 - 0.058 13.7 0.1 0.084 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1648801-1649217 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1648801-1649217 DUF3331 PF11811.3 g103212.t1 - 0.092 12.3 0.1 0.1 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3331) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:145760-146026 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~145760-146026 DUF4613 PF15390.1 g68785.t1 - 0.17 10 3.8 0.22 9.6 2.7 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:74804-75658 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~74804-75658 FH2 PF02181.18 g20963.t1 - 0.15 10.9 0.1 0.29 9.9 0 1.4 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:145512-146297 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~145512-146297 TMF_DNA_bd PF12329.3 g30534.t1 - 0.032 14 1.9 0.059 13.1 1.3 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1122675-1123073 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1122675-1123073 KIX PF02172.11 g98312.t1 - 0.07 13.1 0.1 0.11 12.5 0 1.3 1 0 0 1 1 1 0 KIX domain | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:44112-45621 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~44112-45621 Mu-like_Pro PF10123.4 g126981.t1 - 0.042 13.3 3.5 0.055 12.9 1.2 1.6 1 1 1 2 2 2 0 Mu-like prophage I protein | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:50898-51690 Augustus predicted protein sequence Tobacco scaffold2810_contigs=1~50898-51690 DNA_pol3_a_NII PF11490.3 g76762.t1 - 0.08 12.5 5.2 0.14 11.7 3.6 1.4 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus II | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:4465-4959 Augustus predicted protein sequence Tobacco scaffold1620_contigs=20~4465-4959 TMEM171 PF15471.1 g82413.t1 - 0.34 9.6 2.9 0.58 8.8 2 1.4 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:444181-445458 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~444181-445458 DUF3829 PF12889.2 g29004.t1 - 0.016 14.4 0.5 0.018 14.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:209118-209459 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~209118-209459 Med2 PF11214.3 g123598.t1 - 0.03 14.3 2.7 0.045 13.7 1.8 1.3 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:84853-85413 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~84853-85413 4HBT_3 PF13622.1 g73293.t1 - 2.8 7.6 9.6 4.3 7 6.6 1.3 1 0 0 1 1 1 0 Thioesterase-like superfamily | Ref_seq=scaffold1536_contigs=31, transcript_loc=scaffold1536_contigs=31:79887-80587 Augustus predicted protein sequence Tobacco scaffold1536_contigs=31~79887-80587 FH2 PF02181.18 g115117.t1 - 0.0007 18.5 0.2 0.00082 18.3 0.2 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:36226-36552 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~36226-36552 EBV-NA3 PF05009.7 g60386.t1 - 0.32 10.2 1.8 0.34 10.1 1.2 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:205988-206215 Augustus predicted protein sequence Tobacco scaffold1308_contigs=16~205988-206215 Serpentine_r_xa PF03383.10 g97173.t1 - 0.043 13.5 0.9 0.78 9.4 0.1 2.1 2 0 0 2 2 2 0 Caenorhabditis serpentine receptor-like protein, class xa | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:193601-194394 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~193601-194394 ATHILA PF03078.10 g83543.t1 - 0.0000004 29 0.1 0.018 13.6 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:61288-61941 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~61288-61941 PepSY_TM_1 PF13172.1 g23642.t1 - 0.097 12.4 0.5 0.16 11.7 0.3 1.4 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:281781-282306 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~281781-282306 Atg31 PF09795.4 g96859.t1 - 0.15 11.7 0.1 0.2 11.3 0 1.1 1 0 0 1 1 1 0 Autophagy-related protein 31 | Ref_seq=scaffold2125_contigs=8, transcript_loc=scaffold2125_contigs=8:25777-27586 Augustus predicted protein sequence Tobacco scaffold2125_contigs=8~25777-27586 Tachykinin PF02202.11 g54513.t1 - 0.29 10.9 0 0.29 10.9 0 2.2 2 0 0 2 2 2 0 Tachykinin family | Ref_seq=scaffold1208_contigs=2, transcript_loc=scaffold1208_contigs=2:49824-50114 Augustus predicted protein sequence Tobacco scaffold1208_contigs=2~49824-50114 DUF2029 PF09594.5 g98912.t1 - 0.16 11.4 4.2 0.29 10.5 2.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2029) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:32410-32944 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~32410-32944 NST1 PF13945.1 g74421.t1 - 0.074 13.1 1.2 0.084 12.9 0.8 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:214654-214947 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~214654-214947 UBN2_3 PF14244.1 g106902.t1 - 0.0082 15.7 0.3 0.012 15.1 0.2 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:163157-163780 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~163157-163780 Med12 PF09497.5 g69253.t1 - 0.021 14.7 0.3 0.062 13.2 0.2 1.8 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:73641-74326 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~73641-74326 RVT_3 PF13456.1 g19965.t1 - 0.0032 17.1 0.1 0.0085 15.8 0 1.6 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:137024-137343 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~137024-137343 Pap_E4 PF02711.9 g97461.t1 - 0.029 15.1 0.2 0.044 14.5 0.1 1.4 1 1 0 1 1 1 0 E4 protein | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:64335-66160 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~64335-66160 DUF164 PF02591.10 g5429.t1 - 0.08 12.7 0.2 2.3 8 0.1 2.5 2 0 0 2 2 2 0 Putative zinc ribbon domain | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:37534-37992 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~37534-37992 PRESAN PF09687.5 g50332.t1 - 0.015 15.3 2 0.022 14.8 1.4 1.2 1 0 0 1 1 1 0 Plasmodium RESA N-terminal | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:108633-109037 Augustus predicted protein sequence Tobacco scaffold1137_contigs=5~108633-109037 DUF3659 PF12396.3 g38347.t1 - 0.29 10.8 2.4 7.6 6.3 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3659) | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:23776-24082 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~23776-24082 Tropomyosin PF00261.15 g54286.t1 - 0.0033 16.5 6.5 0.0033 16.5 4.5 1.6 2 0 0 2 2 2 1 Tropomyosin | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:150454-155189 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~150454-155189 RVP_2 PF08284.6 g38602.t1 - 0.0011 18.8 0 0.0017 18.2 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:179486-180798 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~179486-180798 Baculo_E25 PF05274.6 g69161.t1 - 0.074 12.6 0 0.074 12.6 0 1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein E25 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:572246-572449 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~572246-572449 Vma12 PF11712.3 g70369.t1 - 0.53 9.9 3.1 0.82 9.3 2.2 1.3 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:375981-376648 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~375981-376648 ATHILA PF03078.10 g20914.t1 - 1.5E-012 46.9 0 0.0000013 27.2 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:55814-56999 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~55814-56999 Pinin_SDK_memA PF04696.8 g73743.t1 - 0.067 12.7 4.2 0.094 12.3 2.9 1.2 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region | Ref_seq=scaffold1544_contigs=6, transcript_loc=scaffold1544_contigs=6:82863-83452 Augustus predicted protein sequence Tobacco scaffold1544_contigs=6~82863-83452 zf-CCHC PF00098.18 g24043.t1 - 0.073 13 0.7 0.11 12.5 0.5 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold659_contigs=1, transcript_loc=scaffold659_contigs=1:83713-84129 Augustus predicted protein sequence Tobacco scaffold659_contigs=1~83713-84129 FAR1 PF03101.10 g46200.t1 - 0.043 14.3 0 0.061 13.8 0 1.3 1 0 0 1 1 1 0 FAR1 DNA-binding domain | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:51066-52817 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~51066-52817 GTSE1_N PF15259.1 g53297.t1 - 0.023 14.6 0.7 0.033 14.1 0.5 1.3 1 0 0 1 1 1 0 G-2 and S-phase expressed 1 | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:36940-37849 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~36940-37849 bcl-2I13 PF12201.3 g26511.t1 - 0.000000036 33 1.3 0.041 13.3 0 3.2 1 1 2 3 3 3 3 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:208793-209983 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~208793-209983 Ca_chan_IQ PF08763.6 g96248.t1 - 0.023 13.9 0.1 0.035 13.3 0 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel IQ domain | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:228689-229078 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~228689-229078 PROL5-SMR PF15621.1 g37756.t1 - 8.8 6.8 8.6 1.8 9 3.2 1.7 2 0 0 2 2 2 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:324509-326166 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~324509-326166 Mito_fiss_reg PF05308.6 g15962.t1 - 0.016 14.5 1 0.018 14.4 0.7 1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:186212-186460 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~186212-186460 zf-CCHC PF00098.18 g65826.t1 - 0.0016 18.2 2 0.0026 17.6 1.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:181579-181929 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~181579-181929 Peptidase_M75 PF09375.5 g57516.t1 - 0.027 13.8 0.1 0.031 13.5 0.1 1.1 1 0 0 1 1 1 0 Imelysin | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:8487-8780 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~8487-8780 NUDE_C PF04880.8 g74169.t1 - 0.02 15.2 0.7 0.025 14.9 0.5 1.1 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:659381-660531 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~659381-660531 Lipoprotein_8 PF02030.10 g71904.t1 - 0.046 12.2 1.9 0.052 12 1.3 1 1 0 0 1 1 1 0 Hypothetical lipoprotein (MG045 family) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:87156-87467 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~87156-87467 DUF1091 PF06477.8 g127813.t1 - 0.12 12.7 0 0.15 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold2838_contigs=1, transcript_loc=scaffold2838_contigs=1:6039-6296 Augustus predicted protein sequence Tobacco scaffold2838_contigs=1~6039-6296 AdoMetDC_leader PF08132.6 g81146.t1 - 0.023 14.6 1.1 0.036 14 0.7 1.2 1 0 0 1 1 1 0 S-adenosyl-l-methionine decarboxylase leader peptide | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:24606-24860 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~24606-24860 Transposase_28 PF04195.7 g41095.t1 - 0.12 11.6 1 0.2 10.9 0.4 1.6 1 1 1 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:664240-664747 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~664240-664747 Phage_Gp14 PF10666.4 g7098.t1 - 0.13 12.1 0.1 0.19 11.6 0 1.3 1 0 0 1 1 1 0 Phage protein Gp14 | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:46675-47054 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~46675-47054 LURAP PF14854.1 g9255.t1 - 1.1 9 5 11 5.7 0.3 3.3 2 1 1 3 3 3 0 Leucine rich adaptor protein | Ref_seq=scaffold356_contigs=12, transcript_loc=scaffold356_contigs=12:28609-29699 Augustus predicted protein sequence Tobacco scaffold356_contigs=12~28609-29699 eIF3_N PF09440.5 g54591.t1 - 0.034 14.2 0.4 0.042 14 0.3 1.1 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:271075-272588 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~271075-272588 GETHR PF05671.6 g5404.t1 - 0.89 8.7 5.8 1.3 8.1 2.2 2.3 2 0 0 2 2 2 0 GETHR pentapeptide repeat (5 copies) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:179014-179838 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~179014-179838 Ribosomal_L5_C PF00673.16 g69099.t1 - 0.095 12.4 0 0.16 11.7 0 1.4 1 0 0 1 1 1 0 ribosomal L5P family C-terminus | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:456790-457146 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~456790-457146 NOA36 PF06524.7 g88256.t1 - 7 5.8 7.6 7.3 5.7 5.2 1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:56696-56992 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~56696-56992 Baculo_PEP_C PF04513.7 g303.t1 - 0.038 13.8 0.6 0.044 13.6 0.4 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold9_contigs=2, transcript_loc=scaffold9_contigs=2:35387-35752 Augustus predicted protein sequence Tobacco scaffold9_contigs=2~35387-35752 Prim-Pol PF09250.6 g85974.t1 - 0.085 12.8 0 0.089 12.7 0 1.1 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:310810-311097 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~310810-311097 TBX PF12598.3 g82852.t1 - 0.039 14.3 0.6 0.051 13.9 0.4 1.2 1 0 0 1 1 1 0 T-box transcription factor | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:78288-78584 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~78288-78584 RVT_3 PF13456.1 g30353.t1 - 0.00062 19.4 0 0.00083 19 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:399740-400887 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~399740-400887 RNase_H2-Ydr279 PF09468.5 g95574.t1 - 0.35 10 15.2 0.5 9.5 10.5 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:83083-83774 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~83083-83774 PLATZ PF04640.9 g37209.t1 - 0.05 13.7 0.2 0.39 10.9 0.2 2 1 1 0 1 1 1 0 PLATZ transcription factor | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:65426-65722 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~65426-65722 Zip PF02535.17 g61931.t1 - 1.8 7.5 5.3 2.4 7 3.7 1.3 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:74300-74806 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~74300-74806 DUF1985 PF09331.6 g57995.t1 - 0.000000034 33.3 0.9 0.000000049 32.9 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:77096-78479 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~77096-78479 Ribosomal_L15e PF00827.12 g29070.t1 - 0.021 14.3 2.5 0.043 13.3 1.7 1.6 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:46414-47742 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~46414-47742 P19Arf_N PF07392.7 g38000.t1 - 0.01 15.9 0.3 0.025 14.7 0.2 1.6 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:417013-417390 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~417013-417390 DUF1985 PF09331.6 g58220.t1 - 1.1E-011 44.6 0.2 2.7E-011 43.4 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:308799-310444 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~308799-310444 RINGv PF12906.2 g58002.t1 - 0.077 13 0.1 0.19 11.7 0.1 1.7 1 0 0 1 1 1 0 RING-variant domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:91098-91385 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~91098-91385 Trypan_PARP PF05887.6 g66260.t1 - 0.95 9.2 12.4 1.3 8.8 8.6 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:65524-66032 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~65524-66032 IFP_35_N PF07334.8 g42435.t1 - 0.00019 21.3 1.2 0.00085 19.2 0.7 2.2 1 1 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:34196-37549 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~34196-37549 CEP170_C PF15308.1 g45282.t1 - 0.037 12.2 2.2 0.043 12 1.5 1 1 0 0 1 1 1 0 CEP170 C-terminus | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:104276-105992 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~104276-105992 SR-25 PF10500.4 g11036.t1 - 1.4 8.3 9.8 1.9 7.8 6.8 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold402_contigs=1, transcript_loc=scaffold402_contigs=1:840-1130 Augustus predicted protein sequence Tobacco scaffold402_contigs=1~840-1130 UBN2 PF14223.1 g88323.t1 - 0.052 13.3 0.1 0.091 12.5 0 1.5 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:93896-94135 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~93896-94135 HRXXH PF13933.1 g5109.t1 - 0.0017 17.8 0.1 16 4.7 0 3.3 3 1 0 3 3 3 1 Putative peptidase family | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:7103-8237 Augustus predicted protein sequence Tobacco scaffold271_contigs=10~7103-8237 HCV_NS5a_1b PF08301.8 g9702.t1 - 0.0061 16.8 0 0.0066 16.7 0 1.2 1 0 0 1 1 1 1 Hepatitis C virus non-structural 5a domain 1b | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:117513-117806 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~117513-117806 DUF2809 PF10990.3 g124637.t1 - 0.068 13.5 0.2 0.093 13.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:177631-178199 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~177631-178199 RVT_3 PF13456.1 g90390.t1 - 0.000061 22.7 0 0.000072 22.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1962_contigs=17, transcript_loc=scaffold1962_contigs=17:293341-293640 Augustus predicted protein sequence Tobacco scaffold1962_contigs=17~293341-293640 DUF3437 PF11919.3 g7521.t1 - 0.074 12.7 1.6 3.1 7.5 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3437) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:279693-281989 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~279693-281989 ATHILA PF03078.10 g29188.t1 - 0.0021 16.7 0.1 0.0022 16.6 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:252189-252506 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~252189-252506 DUF2188 PF09954.4 g72244.t1 - 2.2 8.2 6.3 3 7.8 4.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:598730-598951 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~598730-598951 RVT_1 PF00078.22 g21206.t1 - 0.019 14.3 0 0.64 9.3 0 2 1 1 1 2 2 2 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:277713-278068 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~277713-278068 AKNA PF12443.3 g20048.t1 - 0.034 14.1 0 0.073 13.1 0 1.5 1 0 0 1 1 1 0 AT-hook-containing transcription factor | Ref_seq=scaffold577_contigs=2, transcript_loc=scaffold577_contigs=2:70099-73173 Augustus predicted protein sequence Tobacco scaffold577_contigs=2~70099-73173 DUF479 PF04336.7 g63747.t1 - 0.3 11.2 2.6 0.67 10 1.8 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF479 | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:266830-267300 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~266830-267300 DUF497 PF04365.8 g16956.t1 - 0.14 12 0.2 2.4 8.1 0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF497) | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:118156-118549 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~118156-118549 Type_III_YscG PF09477.5 g70241.t1 - 0.13 12.3 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Bacterial type II secretion system chaperone protein (type_III_yscG) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:125229-125567 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~125229-125567 TRAM PF01938.15 g28944.t1 - 0.09 12.5 0.2 0.3 10.8 0.1 1.8 1 1 1 2 2 2 0 TRAM domain | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:67818-68042 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~67818-68042 CobS PF02654.10 g65512.t1 - 0.17 11.4 1 36 3.8 0 3 2 1 1 3 3 3 0 Cobalamin-5-phosphate synthase | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:70899-72774 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~70899-72774 zf-H2C2 PF09337.5 g108842.t1 - 0.03 13.7 1.3 0.86 9 0 2.4 2 0 0 2 2 2 0 His(2)-Cys(2) zinc finger | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:348906-349694 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~348906-349694 PRCC PF10253.4 g128590.t1 - 0.006 17.2 0.2 0.0068 17.1 0.1 1.1 1 0 0 1 1 1 1 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:36213-37662 Augustus predicted protein sequence Tobacco scaffold2876_contigs=1~36213-37662 zf-BED PF02892.10 g83760.t1 - 0.0028 17.3 0.5 0.0054 16.4 0.3 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:206997-208016 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~206997-208016 GcrA PF07750.6 g18034.t1 - 0.07 13.3 0.8 0.22 11.7 0.3 1.8 1 1 1 2 2 2 0 GcrA cell cycle regulator | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:302693-303070 Augustus predicted protein sequence Tobacco scaffold540_contigs=6~302693-303070 Phage_RpbA PF10789.4 g29500.t1 - 0.021 14.6 0.3 0.026 14.3 0.2 1.2 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:72538-73151 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~72538-73151 zf-CCHC PF00098.18 g32667.t1 - 0.06 13.3 5.9 0.09 12.7 4.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:649699-649974 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~649699-649974 DUF641 PF04859.7 g89144.t1 - 0.0023 17.6 2 0.0023 17.6 1.4 1.4 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:187108-187326 Augustus predicted protein sequence Tobacco scaffold1939_contigs=7~187108-187326 Transposase_28 PF04195.7 g85722.t1 - 0.0086 15.3 0.2 0.17 11.1 0 2.2 2 0 0 2 2 2 2 Putative gypsy type transposon | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:429224-429850 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~429224-429850 zf-CCHC PF00098.18 g31449.t1 - 0.086 12.8 1.6 0.086 12.8 1.1 1.7 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:124238-124444 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~124238-124444 Atracotoxin PF05353.6 g56715.t1 - 0.085 12.7 2.1 0.14 12 1.4 1.3 1 0 0 1 1 1 0 Delta Atracotoxin | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:713626-714615 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~713626-714615 Asp_protease PF09668.5 g117947.t1 - 0.001 18.5 0.1 1.6 8.2 0 2.2 2 0 0 2 2 2 2 Aspartyl protease | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:73544-74161 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~73544-74161 DUF2889 PF11136.3 g37246.t1 - 0.13 12.5 0.1 0.2 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2889) | Ref_seq=scaffold916_contigs=9, transcript_loc=scaffold916_contigs=9:27472-27837 Augustus predicted protein sequence Tobacco scaffold916_contigs=9~27472-27837 FH2 PF02181.18 g56097.t1 - 0.016 14.1 0 0.02 13.7 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:53931-54596 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~53931-54596 RinB PF06116.7 g66384.t1 - 2.2 7.9 4 3.5 7.2 2.8 1.3 1 0 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold1439_contigs=3, transcript_loc=scaffold1439_contigs=3:63491-63907 Augustus predicted protein sequence Tobacco scaffold1439_contigs=3~63491-63907 Synapsin PF02078.11 g118174.t1 - 0.09 12.9 0 0.1 12.7 0 1.1 1 0 0 1 1 1 0 Synapsin, N-terminal domain | Ref_seq=scaffold2700_contigs=3, transcript_loc=scaffold2700_contigs=3:19660-20371 Augustus predicted protein sequence Tobacco scaffold2700_contigs=3~19660-20371 Fibrillarin PF01269.12 g89460.t1 - 0.14 11 0 0.18 10.6 0 1.1 1 0 0 1 1 1 0 Fibrillarin | Ref_seq=scaffold1947_contigs=6, transcript_loc=scaffold1947_contigs=6:79666-80682 Augustus predicted protein sequence Tobacco scaffold1947_contigs=6~79666-80682 YdjO PF14169.1 g28012.t1 - 0.064 12.7 3.6 52 3.3 0 4.6 3 2 2 5 5 5 0 Cold-inducible protein YdjO | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:755402-756875 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~755402-756875 OLF PF02191.11 g71970.t1 - 0.0034 16.6 0.1 0.0038 16.5 0.1 1 1 0 0 1 1 1 1 Olfactomedin-like domain | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:251525-251806 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~251525-251806 Ribosomal_L27e PF01777.13 g92727.t1 - 0.079 13 0.8 0.13 12.4 0.5 1.4 1 1 0 1 1 1 0 Ribosomal L27e protein family | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:8024-8332 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~8024-8332 C1_1 PF00130.17 g11933.t1 - 0.00066 19.3 4.4 0.001 18.7 3.1 1.3 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) | Ref_seq=scaffold418_contigs=5, transcript_loc=scaffold418_contigs=5:60795-61129 Augustus predicted protein sequence Tobacco scaffold418_contigs=5~60795-61129 eIF3g PF12353.3 g22952.t1 - 0.00066 19.5 0.2 0.00083 19.2 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:17102-17431 Augustus predicted protein sequence Tobacco scaffold631_contigs=3~17102-17431 Cerato-platanin PF07249.7 g108835.t1 - 0.056 13.4 0.1 0.063 13.2 0 1.1 1 0 0 1 1 1 0 Cerato-platanin | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:336472-337949 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~336472-337949 ERbeta_N PF12497.3 g38135.t1 - 0.07 12.9 0.2 0.077 12.8 0.2 1.2 1 0 0 1 1 1 0 Estrogen receptor beta | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:270572-270901 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~270572-270901 IL7 PF01415.11 g90059.t1 - 0.00049 19.7 0.1 0.00053 19.6 0.1 1.1 1 0 0 1 1 1 1 Interleukin 7/9 family | Ref_seq=scaffold1958_contigs=9, transcript_loc=scaffold1958_contigs=9:15282-15503 Augustus predicted protein sequence Tobacco scaffold1958_contigs=9~15282-15503 Sif PF06767.6 g68930.t1 - 0.084 11.6 0 0.093 11.4 0 1 1 0 0 1 1 1 0 Sif protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:155858-156649 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~155858-156649 OKR_DC_1 PF01276.15 g26749.t1 - 0.13 10.7 0.3 0.14 10.6 0.2 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:256194-256511 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~256194-256511 DUF2802 PF10975.3 g128933.t1 - 0.029 14.1 0 0.07 12.8 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) | Ref_seq=scaffold2902_contigs=1, transcript_loc=scaffold2902_contigs=1:18665-20619 Augustus predicted protein sequence Tobacco scaffold2902_contigs=1~18665-20619 Delta_lysin PF05372.6 g86127.t1 - 0.014 14.7 0 0.036 13.4 0 1.6 2 0 0 2 2 2 0 Delta lysin family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:247210-249947 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~247210-249947 Taxilin PF09728.4 g23318.t1 - 0.013 14.6 0.3 0.015 14.4 0.2 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:104573-104773 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~104573-104773 ATP_sub_h PF10775.4 g11133.t1 - 0.066 12.9 0.1 1.3 8.7 0 2.3 1 1 1 2 2 2 0 ATP synthase complex subunit h | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:168602-169561 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~168602-169561 DUF2702 PF10863.3 g13538.t1 - 0.046 13.4 0 0.071 12.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2702) | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:28956-29708 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~28956-29708 Fucose_iso_C PF02952.12 g44775.t1 - 0.11 12 0 0.12 11.8 0 1.1 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:65778-66832 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~65778-66832 PrkA PF06798.7 g43340.t1 - 0.041 13.1 0.9 0.041 13.1 0.6 1.1 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:12441-15153 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~12441-15153 Neisseria_TspB PF05616.8 g70071.t1 - 0.049 11.9 2.8 0.057 11.7 1.9 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:191026-191624 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~191026-191624 Transglut_i_TM PF14400.1 g100119.t1 - 0.048 13.1 0.1 0.082 12.4 0.1 1.4 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:88821-91208 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~88821-91208 Herpes_LP PF03363.8 g128863.t1 - 0.12 11.9 0 0.14 11.7 0 1.1 1 0 0 1 1 1 0 Herpesvirus leader protein | Ref_seq=scaffold2895_contigs=1, transcript_loc=scaffold2895_contigs=1:22700-22903 Augustus predicted protein sequence Tobacco scaffold2895_contigs=1~22700-22903 DUF3552 PF12072.3 g3256.t1 - 0.012 14.8 3.9 0.75 8.9 1.7 2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:128537-130176 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~128537-130176 Noggin PF05806.7 g75566.t1 - 0.5 9.6 2.8 0.64 9.2 1.9 1.1 1 0 0 1 1 1 0 Noggin | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:236658-237002 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~236658-237002 PI-PLC-X PF00388.14 g73970.t1 - 0.067 12.5 0 0.081 12.3 0 1.5 1 1 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:305831-306999 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~305831-306999 DUF3609 PF12259.3 g79183.t1 - 0.083 11.5 0 0.1 11.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3609) | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:129918-130445 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~129918-130445 ATG_C PF09333.6 g109166.t1 - 0.096 12.8 0 0.13 12.3 0 1.2 1 0 0 1 1 1 0 ATG C terminal domain | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:169919-170191 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~169919-170191 Scaffolding_pro PF11418.3 g11390.t1 - 0.1 12.9 0.3 0.14 12.5 0.2 1.1 1 0 0 1 1 1 0 Phi29 scaffolding protein | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:162376-162811 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~162376-162811 DEC-1_N PF04625.8 g8508.t1 - 1.1 7.9 7.1 1.4 7.5 5 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:74078-74857 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~74078-74857 XendoU PF09412.5 g122606.t1 - 0.0014 17.7 0.5 0.0017 17.4 0.3 1 1 0 0 1 1 1 1 Endoribonuclease XendoU | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:376860-377771 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~376860-377771 Cortex-I_coil PF09304.5 g28553.t1 - 0.011 15.7 4.6 0.017 15.1 3.2 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:181144-181888 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~181144-181888 NB-ARC PF00931.17 g92886.t1 - 0.000027 23.1 0 0.000043 22.5 0 1.3 1 0 0 1 1 1 1 NB-ARC domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:92399-95014 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~92399-95014 DUF3528 PF12045.3 g80544.t1 - 0.011 15.9 0 0.014 15.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3528) | Ref_seq=scaffold1718_contigs=3, transcript_loc=scaffold1718_contigs=3:58972-59259 Augustus predicted protein sequence Tobacco scaffold1718_contigs=3~58972-59259 Troponin-I_N PF11636.3 g126075.t1 - 0.62 9.8 3.8 1.8 8.3 2.6 1.8 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:100444-101314 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~100444-101314 Tropomyosin PF00261.15 g29828.t1 - 0.037 13.1 0 0.049 12.7 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:198934-200913 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~198934-200913 DUF612 PF04747.7 g123084.t1 - 0.012 14.5 8.2 0.014 14.3 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF612 | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:154374-154964 Augustus predicted protein sequence Tobacco scaffold2753_contigs=11~154374-154964 DUF1327 PF07041.6 g24335.t1 - 0.053 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1327) | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:102421-103074 Augustus predicted protein sequence Tobacco scaffold670_contigs=7~102421-103074 DUF2362 PF10154.4 g5858.t1 - 0.066 11.8 2.7 0.074 11.7 1.9 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:99687-100106 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~99687-100106 DUF3094 PF11293.3 g24960.t1 - 0.12 11.8 0 0.2 11.1 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:101044-101343 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~101044-101343 Cytochrome_C7 PF14522.1 g47749.t1 - 0.13 11.8 2.5 1.3 8.6 1.7 2 1 1 0 1 1 1 0 Cytochrome c7 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:685742-686002 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~685742-686002 VGCC_beta4Aa_N PF12052.3 g36502.t1 - 0.029 14.2 0.3 0.039 13.8 0.2 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:117050-117499 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~117050-117499 DUF641 PF04859.7 g111185.t1 - 0.0023 17.6 7.1 0.0024 17.6 1.6 2.1 2 0 0 2 2 2 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:64944-65315 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~64944-65315 BEX PF04538.7 g76277.t1 - 0.48 10.6 12.1 3.8 7.7 8.4 2.2 1 1 0 1 1 1 0 Brain expressed X-linked like family | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:78959-79770 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~78959-79770 DUF1869 PF08956.5 g70841.t1 - 0.0092 15.5 0 0.016 14.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1869) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:268497-268805 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~268497-268805 CBP PF12192.3 g27668.t1 - 0.1 12.5 1.2 13 5.8 0.1 2.2 2 0 0 2 2 2 0 Fungal calcium binding protein | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:74419-76402 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~74419-76402 VGCC_beta4Aa_N PF12052.3 g50863.t1 - 0.11 12.3 1.2 0.16 11.8 0.8 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:352194-352418 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~352194-352418 rve PF00665.21 g93592.t1 - 0.0007 19.7 0.1 0.0014 18.7 0 1.5 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:192767-193506 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~192767-193506 MAM PF00629.18 g128013.t1 - 0.099 12.4 0 0.12 12.1 0 1.1 1 0 0 1 1 1 0 MAM domain | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:10619-11663 Augustus predicted protein sequence Tobacco scaffold2846_contigs=1~10619-11663 Pox_Ag35 PF03286.9 g65816.t1 - 0.08 12.4 6.1 0.087 12.3 4.2 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:166081-166646 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~166081-166646 Apelin PF15360.1 g5322.t1 - 0.059 13.5 0.7 0.13 12.4 0.3 1.7 1 1 0 1 1 1 0 APJ endogenous ligand | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:26896-27213 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~26896-27213 HTH_32 PF13565.1 g23559.t1 - 0.0083 16.8 0.6 0.016 15.9 0.4 1.4 1 0 0 1 1 1 1 Homeodomain-like domain | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:59421-60028 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~59421-60028 DUF1666 PF07891.7 g82300.t1 - 0.051 12.9 0 0.054 12.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1666) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:150950-151168 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~150950-151168 BicD PF09730.4 g113029.t1 - 0.0049 15.3 8.5 0.0061 14.9 5.9 1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:206389-207898 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~206389-207898 DUF3006 PF11213.3 g93981.t1 - 0.081 12.6 0.5 0.12 12 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:340269-340517 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~340269-340517 Trns_repr_metal PF02583.12 g33168.t1 - 0.036 14.2 0.5 0.078 13.1 0.1 1.7 2 0 0 2 2 2 0 Metal-sensitive transcriptional repressor | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:602912-603455 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~602912-603455 EPV_E5 PF08135.6 g73099.t1 - 0.38 10.7 2.7 0.62 10 0.2 2.2 2 0 0 2 2 2 0 Major transforming protein E5 family | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:38721-38990 Augustus predicted protein sequence Tobacco scaffold1529_contigs=6~38721-38990 CbtA PF09490.5 g47293.t1 - 0.043 13.1 0 0.062 12.6 0 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:15945-17505 Augustus predicted protein sequence Tobacco scaffold1092_contigs=11~15945-17505 DUF4150 PF13665.1 g50456.t1 - 0.039 13.8 0 0.047 13.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) | Ref_seq=scaffold1140_contigs=2, transcript_loc=scaffold1140_contigs=2:21828-22115 Augustus predicted protein sequence Tobacco scaffold1140_contigs=2~21828-22115 Med2 PF11214.3 g104313.t1 - 0.2 11.7 2.7 0.28 11.2 1.9 1.2 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:489331-491180 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~489331-491180 Aa_trans PF01490.13 g15596.t1 - 0.016 13.7 0.3 0.016 13.7 0.2 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:20293-20553 Augustus predicted protein sequence Tobacco scaffold501_contigs=2~20293-20553 MIS13 PF08202.6 g73701.t1 - 0.055 12.5 0.2 0.064 12.3 0.1 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:229270-229482 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~229270-229482 Ribosomal_L6 PF00347.18 g110691.t1 - 0.058 13.9 0.2 0.17 12.4 0.1 1.8 1 1 1 2 2 2 0 Ribosomal protein L6 | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:256862-258973 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~256862-258973 CTNNBL PF08216.6 g44898.t1 - 0.026 14.1 0.1 0.032 13.8 0.1 1.1 1 0 0 1 1 1 0 Catenin-beta-like, Arm-motif containing nuclear | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:150783-151620 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~150783-151620 Chon_Sulph_att PF06566.6 g119822.t1 - 0.017 14.7 6.1 0.019 14.6 4.2 1 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:277536-277781 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~277536-277781 TILa PF12714.2 g119340.t1 - 0.13 12 1 5.6 6.8 0 2 1 1 1 2 2 2 0 TILa domain | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:484360-484578 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~484360-484578 UBN2_2 PF14227.1 g16314.t1 - 0.00062 19.3 0 0.0007 19.1 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:39750-40459 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~39750-40459 Pol_alpha_B_N PF08418.5 g30047.t1 - 0.48 9.9 4.2 0.54 9.7 2.9 1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:283946-284311 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~283946-284311 Peptidase_M3_N PF08439.5 g112354.t1 - 0.11 12.4 0.2 25 4.9 0 2.5 2 0 0 2 2 2 0 Oligopeptidase F | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:173948-178718 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~173948-178718 PRP4 PF08799.6 g67141.t1 - 0.045 13 0 0.093 12 0 1.6 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:594579-595429 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~594579-595429 DUF4559 PF15112.1 g24719.t1 - 0.00053 19.2 1.1 0.00061 19 0.8 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:106485-107100 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~106485-107100 NAD_binding_9 PF13454.1 g42823.t1 - 0.063 13 0 0.063 13 0 1.1 1 0 0 1 1 1 0 FAD-NAD(P)-binding | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:641620-642614 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~641620-642614 UPF0220 PF05255.6 g94716.t1 - 0.036 13.3 0.7 0.048 12.9 0.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:6921-7268 Augustus predicted protein sequence Tobacco scaffold2045_contigs=9~6921-7268 Hepatitis_core PF00906.15 g65818.t1 - 0.046 13.3 1.7 0.053 13.1 1.2 1.1 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:172777-173067 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~172777-173067 HTH_8 PF02954.14 g119973.t1 - 0.038 13.5 0.3 0.33 10.5 0.1 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:162623-162913 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~162623-162913 P22_AR_N PF10547.4 g90157.t1 - 0.11 12.2 0 0.17 11.7 0 1.3 1 0 0 1 1 1 0 P22_AR N-terminal domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:215170-216973 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~215170-216973 DUF4170 PF13773.1 g53528.t1 - 0.023 14.5 0 9.9 6.1 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4170) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:537665-538558 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~537665-538558 HALZ PF02183.13 g16811.t1 - 0.0038 16.9 6.7 0.42 10.3 0.1 3.1 2 1 1 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:478674-480391 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~478674-480391 CorA PF01544.13 g91744.t1 - 0.018 14.1 0.3 0.022 13.8 0.2 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:40384-40674 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~40384-40674 Toxin_23 PF08093.6 g110511.t1 - 0.9 9.5 6.8 14 5.7 0.2 3.3 3 0 0 3 3 3 0 Magi 5 toxic peptide family | Ref_seq=scaffold2559_contigs=11, transcript_loc=scaffold2559_contigs=11:11355-11666 Augustus predicted protein sequence Tobacco scaffold2559_contigs=11~11355-11666 TrkA_C PF02080.16 g68217.t1 - 0.09 12.3 0.1 0.37 10.4 0 1.8 1 1 1 2 2 2 0 TrkA-C domain | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:387036-387393 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~387036-387393 RBD PF02196.10 g115260.t1 - 0.08 12.7 0 0.13 12 0 1.3 1 0 0 1 1 1 0 Raf-like Ras-binding domain | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:343197-343965 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~343197-343965 DUF1091 PF06477.8 g34650.t1 - 0.31 11.5 1.3 2 8.8 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:11063-11320 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~11063-11320 Nup54 PF13874.1 g45722.t1 - 0.15 11.7 4.2 0.24 11 2.9 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:455469-456460 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~455469-456460 Pilus_CpaD PF09476.5 g118466.t1 - 0.083 12.3 0 0.11 11.9 0 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:230347-231347 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~230347-231347 HTH_20 PF12840.2 g115890.t1 - 0.025 14.3 0 9 6.1 0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:186324-187470 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~186324-187470 LIME1 PF15332.1 g50266.t1 - 0.069 12.3 0 0.1 11.8 0 1.1 1 0 0 1 1 1 0 Lck-interacting transmembrane adapter 1 | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:253788-254534 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~253788-254534 ASL_C2 PF14698.1 g90860.t1 - 0.015 15.3 0 0.026 14.5 0 1.4 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:4520-8266 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~4520-8266 DUF965 PF06135.7 g115451.t1 - 0.027 14.5 0 0.035 14.1 0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF965) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:380139-380363 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~380139-380363 Adeno_PIX PF03955.9 g100657.t1 - 0.3 11.6 1.8 0.35 11.3 1.3 1.1 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:185246-185449 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~185246-185449 Chromo PF00385.19 g73991.t1 - 0.0037 16.8 2.3 0.0063 16.1 0.1 2.1 2 0 0 2 2 2 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:349681-349971 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~349681-349971 rve PF00665.21 g83177.t1 - 0.047 13.8 0 0.084 12.9 0 1.4 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:254929-255943 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~254929-255943 DUF4398 PF14346.1 g80938.t1 - 0.12 12.3 0.1 0.17 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:115404-115765 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~115404-115765 DUF4283 PF14111.1 g125759.t1 - 0.0012 17.9 0 0.0013 17.7 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:82338-82731 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~82338-82731 Copper-fist PF00649.13 g47345.t1 - 0.22 10.7 2.7 0.69 9.1 0.1 2.2 2 0 0 2 2 2 0 Copper fist DNA binding domain | Ref_seq=scaffold1095_contigs=4, transcript_loc=scaffold1095_contigs=4:8039-8596 Augustus predicted protein sequence Tobacco scaffold1095_contigs=4~8039-8596 Transposase_24 PF03004.9 g75142.t1 - 0.0071 16.2 0 0.0099 15.7 0 1.3 1 0 0 1 1 1 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:40795-41566 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~40795-41566 TOH_N PF12549.3 g60376.t1 - 0.000021 23.8 1.4 1.2 8.8 0 3.4 3 0 0 3 3 3 3 Tyrosine hydroxylase N terminal | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:175477-178152 Augustus predicted protein sequence Tobacco scaffold1308_contigs=16~175477-178152 Porin_OmpG PF09381.5 g93219.t1 - 0.031 13.3 0.1 0.042 12.9 0 1.2 1 0 0 1 1 1 0 Outer membrane protein G (OmpG) | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:116924-119154 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~116924-119154 NST1 PF13945.1 g98295.t1 - 0.34 10.9 4 0.37 10.8 2.8 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:7743-7997 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~7743-7997 Zip PF02535.17 g37114.t1 - 0.044 12.7 0 0.051 12.5 0 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:173317-173742 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~173317-173742 Fer4 PF00037.22 g16294.t1 - 0.18 11.4 1.7 0.3 10.7 1.2 1.3 1 0 0 1 1 1 0 4Fe-4S binding domain | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:3720-3953 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~3720-3953 RuvB_C PF05491.8 g35252.t1 - 0.054 13.1 0 0.28 10.8 0 2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:280251-281098 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~280251-281098 DUF4219 PF13961.1 g104414.t1 - 0.00092 18.5 0.1 0.0015 17.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:56103-56345 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~56103-56345 Caa3_CtaG PF09678.5 g109979.t1 - 0.007 15.3 0.2 0.0088 15 0.1 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:90798-91109 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~90798-91109 Xpo1 PF08389.7 g96650.t1 - 0.044 13.6 0.1 0.091 12.6 0.1 1.6 1 0 0 1 1 1 0 Exportin 1-like protein | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:64172-65257 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~64172-65257 DUF4560 PF15118.1 g62166.t1 - 0.031 14 0.2 0.044 13.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4560) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:104855-105163 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~104855-105163 ICE2 PF08426.5 g4403.t1 - 0.14 10.7 1.8 0.15 10.6 1.2 1.2 1 0 0 1 1 1 0 ICE2 | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:152700-153060 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~152700-153060 MHCassoc_trimer PF08831.5 g29537.t1 - 0.21 11.4 1.1 0.47 10.3 0.3 1.9 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:157442-157711 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~157442-157711 DUF730 PF05325.6 g86790.t1 - 0.092 12.5 0.1 0.11 12.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF730) | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:51083-51394 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~51083-51394 DUF1985 PF09331.6 g28145.t1 - 0.022 14.5 0.1 0.085 12.6 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:188646-195218 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~188646-195218 DUF4284 PF14112.1 g44001.t1 - 0.065 13.7 0.9 0.2 12.1 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4284) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:149537-150256 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~149537-150256 Casc1 PF12366.3 g35316.t1 - 0.099 12.1 2.4 0.096 12.1 1.6 1.1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:25697-25924 Augustus predicted protein sequence Tobacco scaffold866_contigs=9~25697-25924 Motilin_ghrelin PF04644.7 g110464.t1 - 0.013 15.3 2.7 1.7 8.5 0.1 2.1 2 0 0 2 2 2 0 Motilin/ghrelin | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:1-565 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~1-565 Antimicrobial10 PF08105.6 g28169.t1 - 0.55 9.8 2.7 1 9 0.5 2.4 2 0 0 2 2 2 0 Metchnikowin family | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:28840-29388 Augustus predicted protein sequence Tobacco scaffold740_contigs=1~28840-29388 CBM_3 PF00942.13 g57482.t1 - 0.19 11.7 1.9 4.2 7.4 0.1 2.5 2 0 0 2 2 2 0 Cellulose binding domain | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:268460-268795 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~268460-268795 VitD-bind_III PF09164.5 g5540.t1 - 0.016 14.8 0.1 0.023 14.2 0.1 1.2 1 0 0 1 1 1 0 Vitamin D binding protein, domain III | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:231712-232185 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~231712-232185 Pex19 PF04614.7 g122682.t1 - 0.0014 18.2 1.4 0.0087 15.7 0.1 2 1 1 1 2 2 2 1 Pex19 protein family | Ref_seq=scaffold2748_contigs=28, transcript_loc=scaffold2748_contigs=28:34716-36237 Augustus predicted protein sequence Tobacco scaffold2748_contigs=28~34716-36237 ATP-synt_DE PF00401.15 g71890.t1 - 1.2 9 4.8 1.9 8.4 3.4 1.4 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:28360-28725 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~28360-28725 AIG1 PF04548.11 g59719.t1 - 0.015 14.3 0.1 0.017 14.2 0.1 1 1 0 0 1 1 1 0 AIG1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:34858-36475 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~34858-36475 DUF4455 PF14643.1 g47690.t1 - 0.0041 15.8 4.4 0.005 15.5 3.1 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:557076-557660 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~557076-557660 Trypan_PARP PF05887.6 g32402.t1 - 0.99 9.2 17.9 1.3 8.8 12.4 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:77153-77428 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~77153-77428 Phasin PF05597.6 g67439.t1 - 0.056 13.2 0.8 0.48 10.2 0 2.2 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:279381-283807 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~279381-283807 FH2 PF02181.18 g4950.t1 - 0.013 14.3 0.1 0.015 14.2 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold269_contigs=8, transcript_loc=scaffold269_contigs=8:13162-13398 Augustus predicted protein sequence Tobacco scaffold269_contigs=8~13162-13398 UBN2 PF14223.1 g33607.t1 - 0.019 14.7 2.1 0.022 14.5 0.2 1.8 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:187999-188580 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~187999-188580 Med21 PF11221.3 g55378.t1 - 0.04 13.8 0.6 0.043 13.7 0.4 1 1 0 0 1 1 1 0 Subunit 21 of Mediator complex | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:242344-242610 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~242344-242610 RNA_pol_3_Rpc31 PF11705.3 g28148.t1 - 1.4 8.8 7 1.4 8.8 4.8 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:201380-201607 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~201380-201607 DUF4636 PF15468.1 g111098.t1 - 0.015 14.7 1 0.026 14 0.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4636) | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:70411-70765 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~70411-70765 zf-CCHC PF00098.18 g8314.t1 - 0.00069 19.4 0.4 0.0012 18.6 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:162822-163337 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~162822-163337 DUF1985 PF09331.6 g62191.t1 - 0.071 12.9 0 0.13 12 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:149375-152388 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~149375-152388 TraS PF10624.4 g47613.t1 - 0.19 11.2 0.7 0.27 10.8 0.5 1.3 1 1 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:331647-331883 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~331647-331883 Tropomyosin PF00261.15 g33988.t1 - 0.014 14.4 2 0.018 14.1 1.4 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold837_contigs=1, transcript_loc=scaffold837_contigs=1:87322-87645 Augustus predicted protein sequence Tobacco scaffold837_contigs=1~87322-87645 Ste5 PF11610.3 g127887.t1 - 1.6 8.3 4.8 0.31 10.5 0.8 1.7 2 0 0 2 2 2 0 Scaffold protein Ste5-Fus5 binding region | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:53586-53960 Augustus predicted protein sequence Tobacco scaffold2840_contigs=1~53586-53960 UBN2_2 PF14227.1 g115524.t1 - 0.02 14.4 1 0.046 13.2 0.1 1.9 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:577624-578146 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~577624-578146 NST1 PF13945.1 g69991.t1 - 0.074 13.1 0 0.087 12.8 0 1.2 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:48020-48391 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~48020-48391 Joubert PF15392.1 g103859.t1 - 0.15 11.2 1.6 0.16 11.1 1.1 1 1 0 0 1 1 1 0 Joubert syndrome-associated | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:249742-250029 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~249742-250029 DUF3637 PF12337.3 g294.t1 - 0.038 13.9 3.1 0.61 10 0.2 3 2 1 1 3 3 3 0 Protein of unknown function (DUF3637) | Ref_seq=scaffold9_contigs=2, transcript_loc=scaffold9_contigs=2:13849-14593 Augustus predicted protein sequence Tobacco scaffold9_contigs=2~13849-14593 DUF1199 PF06712.6 g98862.t1 - 0.024 14.4 1 0.061 13.1 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:319150-319663 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~319150-319663 Rb_C PF08934.5 g86920.t1 - 0.064 12.8 0 0.068 12.8 0 1.1 1 0 0 1 1 1 0 Rb C-terminal domain | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:65832-66104 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~65832-66104 DUF3082 PF11282.3 g69160.t1 - 0.72 9.9 6.7 0.55 10.3 3.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3082) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:568053-568403 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~568053-568403 Spc7 PF08317.6 g77510.t1 - 0.018 13.7 1.2 1.4 7.5 0.1 2 2 0 0 2 2 2 0 Spc7 kinetochore protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:252040-252447 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~252040-252447 PMG PF05287.7 g76296.t1 - 0.14 11.9 2.2 0.25 11.1 1.4 1.5 1 1 0 1 1 1 0 PMG protein | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:124114-124617 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~124114-124617 FH2 PF02181.18 g1774.t1 - 0.069 12 0.1 0.088 11.6 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:136911-137423 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~136911-137423 Not3 PF04065.10 g111408.t1 - 0.1 11.8 5 0.13 11.5 3.5 1 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:388579-388914 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~388579-388914 Ustilago_mating PF05722.7 g123768.t1 - 0.0072 15.6 0 0.0093 15.3 0 1.2 1 0 0 1 1 1 1 Ustilago B locus mating-type protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:528206-528751 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~528206-528751 YoqO PF14037.1 g105197.t1 - 0.098 12.7 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 YoqO-like protein | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:549326-549574 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~549326-549574 RVT_3 PF13456.1 g12694.t1 - 0.000033 23.5 0.1 0.000047 23 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:285293-285589 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~285293-285589 Lar_restr_allev PF14354.1 g20693.t1 - 0.0091 16.2 0.1 0.016 15.4 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:87859-89166 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~87859-89166 Nuc_recep-AF1 PF11825.3 g69361.t1 - 0.17 11.8 0.6 0.87 9.5 0.4 2.1 1 1 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:114600-115117 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~114600-115117 rve PF00665.21 g69049.t1 - 0.012 15.7 0 0.013 15.5 0 1.1 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:357816-358016 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~357816-358016 B-block_TFIIIC PF04182.7 g122544.t1 - 0.0041 16.9 0.5 0.078 12.8 0.1 2.1 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:209345-212555 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~209345-212555 BSP_II PF05432.6 g115735.t1 - 0.002 17.4 11.2 0.0022 17.3 7.8 1 1 0 0 1 1 1 1 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:140673-141005 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~140673-141005 GPW_gp25 PF04965.9 g97893.t1 - 0.059 12.9 0 0.084 12.4 0 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme | Ref_seq=scaffold2146_contigs=11, transcript_loc=scaffold2146_contigs=11:168767-169054 Augustus predicted protein sequence Tobacco scaffold2146_contigs=11~168767-169054 DUF4575 PF15143.1 g49196.t1 - 0.085 12.5 2.1 0.17 11.6 1.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4575) | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:33488-33688 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~33488-33688 UBN2 PF14223.1 g96199.t1 - 0.000012 25 1.7 0.000075 22.4 0.1 2.2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:99808-100388 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~99808-100388 2Fe-2S_Ferredox PF11591.3 g3793.t1 - 0.15 11.7 0.3 8.9 6 0 2.2 2 0 0 2 2 2 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:22561-24078 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~22561-24078 FH2 PF02181.18 g398.t1 - 0.012 14.4 0 0.015 14.2 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:75500-75802 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~75500-75802 Rio2_N PF09202.6 g95569.t1 - 0.012 15.6 0 7.1 6.7 0 2.3 2 0 0 2 2 2 0 Rio2, N-terminal | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:68382-71903 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~68382-71903 Atg14 PF10186.4 g1755.t1 - 0.001 18 0.1 0.0012 17.8 0.1 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:105137-105457 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~105137-105457 Snapin_Pallidin PF14712.1 g115840.t1 - 0.03 14.6 0.1 0.031 14.5 0 1.1 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:79585-79788 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~79585-79788 Apolipoprotein PF01442.13 g6220.t1 - 0.11 11.9 0 0.2 11.1 0 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:276166-277669 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~276166-277669 Dec-1 PF04624.9 g59442.t1 - 0.014 15 0 0.023 14.3 0 1.4 1 0 0 1 1 1 0 Dec-1 repeat | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:148078-148829 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~148078-148829 Meckelin PF09773.4 g47073.t1 - 0.78 7.4 4.9 0.5 8 0.9 1.8 1 1 1 2 2 2 0 Meckelin (Transmembrane protein 67) | Ref_seq=scaffold1084_contigs=1, transcript_loc=scaffold1084_contigs=1:117048-117386 Augustus predicted protein sequence Tobacco scaffold1084_contigs=1~117048-117386 Ofd1_CTDD PF10637.4 g121770.t1 - 0.04 13 0.5 0.049 12.7 0.3 1.1 1 0 0 1 1 1 0 Oxoglutarate and iron-dependent oxygenase degradation C-term | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:294003-294362 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~294003-294362 Tropomyosin PF00261.15 g119984.t1 - 0.000036 22.9 1.8 0.00005 22.5 1.2 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:190690-193190 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~190690-193190 PE_PPE_C PF12484.3 g12887.t1 - 0.029 15.2 0.2 0.047 14.6 0.1 1.3 1 0 0 1 1 1 0 Polymorphic PE/PPE proteins C terminal | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:98931-99344 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~98931-99344 ATHILA PF03078.10 g126130.t1 - 0.0000028 26.1 0.3 0.000003 26 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:50266-50613 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~50266-50613 zf-CCHC PF00098.18 g42471.t1 - 0.0015 18.3 3.3 0.0023 17.7 2.3 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:123659-124063 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~123659-124063 DUF755 PF05501.6 g68787.t1 - 0.32 11 7.8 0.36 10.9 5.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:76670-77386 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~76670-77386 UBN2_3 PF14244.1 g121842.t1 - 0.074 12.6 0 0.11 12 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:524866-525165 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~524866-525165 Avl9 PF09794.4 g4276.t1 - 0.049 12.1 0.1 0.054 11.9 0.1 1.1 1 0 0 1 1 1 0 Transport protein Avl9 | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:5043-5447 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~5043-5447 DUF3150 PF11348.3 g110968.t1 - 0.024 13.7 0 0.025 13.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:54706-55002 Augustus predicted protein sequence Tobacco scaffold2571_contigs=16~54706-55002 Shisa PF13908.1 g93804.t1 - 0.13 12.4 3.5 0.16 12.1 2.4 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:75234-75563 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~75234-75563 DUF2457 PF10446.4 g76369.t1 - 5.4 5.6 9.7 5.9 5.5 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:48520-49623 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~48520-49623 Fzo_mitofusin PF04799.8 g120835.t1 - 0.057 12.8 3.6 0.096 12 2.5 1.5 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:308171-308887 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~308171-308887 Mnd1 PF03962.10 g61282.t1 - 9 5.9 9.3 1 8.9 2 2.1 1 1 1 2 2 2 0 Mnd1 family | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:90682-93158 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~90682-93158 UBN2 PF14223.1 g76214.t1 - 0.00000047 29.6 0.1 0.000006 26 0 2.1 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:288874-289316 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~288874-289316 THOC7 PF05615.8 g119999.t1 - 0.0061 16.8 5.4 0.0061 16.8 3.7 1.6 1 1 1 2 2 2 1 Tho complex subunit 7 | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:229465-230055 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~229465-230055 Prp31_C PF09785.4 g51578.t1 - 0.033 14.6 0.7 0.047 14.1 0.5 1.1 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:198786-199271 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~198786-199271 DegQ PF08181.6 g14824.t1 - 0.41 10.4 3.9 27 4.5 0 3.7 5 0 0 5 5 5 0 DegQ (SacQ) family | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:290099-291046 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~290099-291046 Trypan_PARP PF05887.6 g86631.t1 - 9.5 6 12.3 10 5.8 8.5 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:53443-53738 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~53443-53738 PBP1_TM PF14812.1 g38960.t1 - 1.7 9 11 11 6.4 1.7 2.2 1 1 1 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold946_contigs=4, transcript_loc=scaffold946_contigs=4:87835-88203 Augustus predicted protein sequence Tobacco scaffold946_contigs=4~87835-88203 zf-CCHC PF00098.18 g44892.t1 - 0.0088 15.9 4 0.0088 15.9 2.8 2.2 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:141041-141367 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~141041-141367 CDC37_M PF08565.6 g42250.t1 - 0.035 13.6 0.1 0.037 13.5 0.1 1.1 1 0 0 1 1 1 0 Cdc37 Hsp90 binding domain | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:270396-271005 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~270396-271005 Cir_N PF10197.4 g78418.t1 - 0.014 15.4 0 0.024 14.6 0 1.3 1 0 0 1 1 1 0 N-terminal domain of CBF1 interacting co-repressor CIR | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:7652-8002 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~7652-8002 Neisseria_TspB PF05616.8 g47652.t1 - 0.00049 18.5 4.3 0.00068 18.1 3 1.1 1 0 0 1 1 1 1 Neisseria meningitidis TspB protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:440985-442167 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~440985-442167 ATHILA PF03078.10 g96026.t1 - 0.0000061 25 0 0.000007 24.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:53316-53834 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~53316-53834 CBS PF00571.23 g120105.t1 - 0.074 12.8 0.3 2 8.2 0 2.7 1 1 1 2 2 2 0 CBS domain | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:40993-41538 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~40993-41538 POM121 PF15229.1 g29301.t1 - 0.071 12.5 7.7 0.087 12.2 5.3 1.2 1 0 0 1 1 1 0 POM121 family | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:203185-203454 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~203185-203454 BSD PF03909.12 g114414.t1 - 0.2 11.4 1.6 8.9 6.1 0.1 2.1 2 0 0 2 2 2 0 BSD domain | Ref_seq=scaffold2649_contigs=6, transcript_loc=scaffold2649_contigs=6:2628-2894 Augustus predicted protein sequence Tobacco scaffold2649_contigs=6~2628-2894 RBM39linker PF15519.1 g51758.t1 - 0.072 13.3 0 0.12 12.6 0 1.4 1 0 0 1 1 1 0 linker between RRM2 and RRM3 domains in RBM39 protein | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:175376-175726 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~175376-175726 DUF4283 PF14111.1 g115188.t1 - 0.029 13.4 0 0.29 10.2 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:177711-178106 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~177711-178106 Cys_rich_CPXG PF14255.1 g40885.t1 - 1.5 8.6 4.6 0.42 10.4 1 1.7 1 1 1 2 2 2 0 Cysteine-rich CPXCG | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:79984-81856 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~79984-81856 Pex24p PF06398.6 g33757.t1 - 0.058 12.1 0.1 0.058 12.1 0.1 1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:324250-324486 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~324250-324486 Phage-A118_gp45 PF10653.4 g42640.t1 - 0.14 12 0.1 0.25 11.2 0 1.4 1 0 0 1 1 1 0 Protein gp45 of Bacteriophage A118 | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:222074-222346 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~222074-222346 PMD PF10536.4 g94029.t1 - 0.013 14.4 0.1 0.017 14.1 0.1 1.1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:1187-1696 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~1187-1696 FlxA PF14282.1 g43822.t1 - 0.96 9.4 8.1 0.049 13.5 1.5 1.8 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:58536-59269 Augustus predicted protein sequence Tobacco scaffold1029_contigs=5~58536-59269 Nucleoplasmin PF03066.10 g101492.t1 - 0.069 12.6 2.3 0.067 12.6 1.6 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:149256-149801 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~149256-149801 DUF3290 PF11694.3 g56608.t1 - 0.022 14.4 0.1 0.028 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:457112-457569 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~457112-457569 Tiny_TM_bacill PF09680.5 g115756.t1 - 0.75 9.2 11.3 4 6.9 1.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold2662_contigs=2, transcript_loc=scaffold2662_contigs=2:36889-38236 Augustus predicted protein sequence Tobacco scaffold2662_contigs=2~36889-38236 CRAL_TRIO PF00650.15 g80119.t1 - 0.12 11.8 0.2 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 CRAL/TRIO domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:181449-181802 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~181449-181802 ATHILA PF03078.10 g101643.t1 - 0.000092 21.1 0 0.0006 18.5 0 1.8 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2216_contigs=4, transcript_loc=scaffold2216_contigs=4:7936-8295 Augustus predicted protein sequence Tobacco scaffold2216_contigs=4~7936-8295 Dodecin PF07311.7 g80951.t1 - 0.089 12.8 2 0.2 11.7 0.7 2.2 1 1 1 2 2 2 0 Dodecin | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:154629-156274 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~154629-156274 PEX-1N PF09262.6 g2919.t1 - 0.099 12.7 0.3 0.23 11.5 0.2 1.8 1 1 0 1 1 1 0 Peroxisome biogenesis factor 1, N-terminal | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:54692-54982 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~54692-54982 NESP55 PF06390.7 g103770.t1 - 0.74 9.1 6.5 0.26 10.6 2.6 1.6 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:12836-13708 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~12836-13708 zf-CCHC PF00098.18 g112447.t1 - 0.0031 17.3 7.2 0.0031 17.3 5 1.6 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:56056-56795 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~56056-56795 Haem_bd PF14376.1 g65925.t1 - 0.1 12.2 0 16 5.1 0 2.2 2 0 0 2 2 2 0 Haem-binding domain | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:81752-82270 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~81752-82270 DUF3248 PF11609.3 g52114.t1 - 0.33 10.6 1.3 0.54 9.9 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3248) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:442483-442908 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~442483-442908 Diphtheria_C PF02763.9 g115523.t1 - 0.11 11.9 0 0.11 11.8 0 1.1 1 0 0 1 1 1 0 Diphtheria toxin, C domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:575506-576294 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~575506-576294 Alb1 PF09135.6 g111893.t1 - 0.09 13.4 0 27 5.4 0 2.7 2 2 0 2 2 2 0 Alb1 | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:41499-42257 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~41499-42257 SH PF01445.12 g75388.t1 - 0.11 12.1 0.4 0.25 10.9 0.3 1.6 1 0 0 1 1 1 0 Viral small hydrophobic protein | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:303987-304800 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~303987-304800 IGFBP PF00219.13 g126164.t1 - 0.47 11 6.9 0.2 12.2 2 2 2 0 0 2 2 2 0 Insulin-like growth factor binding protein | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:102234-102446 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~102234-102446 RMF PF04957.7 g6155.t1 - 0.21 11.2 1.5 0.6 9.8 0.2 1.9 2 0 0 2 2 2 0 Ribosome modulation factor | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:149456-149665 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~149456-149665 Nop14 PF04147.7 g129365.t1 - 0.11 10.3 21.9 0.12 10.3 15.2 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2945_contigs=1, transcript_loc=scaffold2945_contigs=1:3265-3465 Augustus predicted protein sequence Tobacco scaffold2945_contigs=1~3265-3465 Cgr1 PF03879.9 g14330.t1 - 0.013 15.6 4.6 0.016 15.3 3.2 1.2 1 0 0 1 1 1 0 Cgr1 family | Ref_seq=scaffold473_contigs=14, transcript_loc=scaffold473_contigs=14:36315-37608 Augustus predicted protein sequence Tobacco scaffold473_contigs=14~36315-37608 Prok-TraM PF09228.5 g100348.t1 - 0.002 18.2 0 3.4 7.8 0 2.3 2 0 0 2 2 2 2 Prokaryotic Transcriptional repressor TraM | Ref_seq=scaffold2188_contigs=14, transcript_loc=scaffold2188_contigs=14:104049-107103 Augustus predicted protein sequence Tobacco scaffold2188_contigs=14~104049-107103 DUF1676 PF07898.8 g113675.t1 - 0.08 13.2 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:155291-156061 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~155291-156061 DUF1917 PF08939.5 g116752.t1 - 0.036 13.7 1.4 0.042 13.5 1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:87828-88052 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~87828-88052 DUF1836 PF08876.6 g9289.t1 - 0.043 13.5 0 0.043 13.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1836) | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:98787-99068 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~98787-99068 Gly-rich_Ago1 PF12764.2 g97366.t1 - 2.4 8.8 6.1 0.65 10.6 1.8 1.7 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:123262-123666 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~123262-123666 V_ATPase_I PF01496.14 g105787.t1 - 0.054 11.3 1 0.056 11.2 0.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:312950-313614 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~312950-313614 PAN_1 PF00024.21 g119220.t1 - 0.048 13.4 0.2 0.086 12.6 0.1 1.4 1 0 0 1 1 1 0 PAN domain | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:165426-167813 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~165426-167813 Cytomega_UL20A PF05984.7 g18613.t1 - 0.21 11.8 1.8 0.24 11.5 1.3 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL20A protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:310158-311086 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~310158-311086 UNC119_bdg PF15435.1 g27918.t1 - 0.12 11.7 0.1 0.16 11.3 0 1.1 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:574316-574732 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~574316-574732 Ras_bdg_2 PF14847.1 g12540.t1 - 0.061 13.2 0 0.067 13.1 0 1.1 1 0 0 1 1 1 0 Ras-binding domain of Byr2 | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:145147-145452 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~145147-145452 Peptidase_M7 PF02031.11 g63937.t1 - 0.085 12.5 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Streptomyces extracellular neutral proteinase (M7) family | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:365830-366534 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~365830-366534 DUF2369 PF10179.4 g61591.t1 - 0.12 11.4 0 0.15 11.1 0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2369) | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:228439-228966 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~228439-228966 bZIP_1 PF00170.16 g102523.t1 - 0.0075 16.2 0.6 0.012 15.5 0.4 1.4 1 0 0 1 1 1 1 bZIP transcription factor | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:101775-102107 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~101775-102107 TBCC PF07986.7 g64099.t1 - 0.018 14.4 0.2 0.024 14 0.2 1.3 1 0 0 1 1 1 0 Tubulin binding cofactor C | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:346484-348110 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~346484-348110 Pollen_allerg_2 PF01620.11 g86294.t1 - 0.025 14.9 0.5 0.041 14.2 0.3 1.2 1 0 0 1 1 1 0 Ribonuclease (pollen allergen) | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:62968-66233 Augustus predicted protein sequence Tobacco scaffold1843_contigs=11~62968-66233 Resistin PF06954.6 g108960.t1 - 0.027 14.7 0.2 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 Resistin | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:25911-26267 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~25911-26267 DUF4307 PF14155.1 g60075.t1 - 0.0052 16.5 2.9 1.3 8.8 0.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4307) | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:255101-255785 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~255101-255785 Spc7 PF08317.6 g46067.t1 - 0.0051 15.5 1.5 0.0059 15.3 1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:18521-18968 Augustus predicted protein sequence Tobacco scaffold1054_contigs=13~18521-18968 LRR_9 PF14580.1 g103695.t1 - 0.17 11.4 0.5 12 5.4 0 2.6 2 1 1 3 3 3 0 Leucine-rich repeat | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:73060-73571 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~73060-73571 Peptidase_S41 PF03572.13 g117326.t1 - 0.018 14.4 0.1 0.018 14.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase family S41 | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:183711-184022 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~183711-184022 PPK2 PF03976.9 g54387.t1 - 0.042 13.1 0.1 0.06 12.6 0.1 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:213613-213987 Augustus predicted protein sequence Tobacco scaffold1207_contigs=28~213613-213987 Defensin_big PF14862.1 g30540.t1 - 0.013 15.5 0.1 0.018 15.1 0 1.2 1 0 0 1 1 1 0 Big defensin | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1126821-1127129 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1126821-1127129 T_Ag_DNA_bind PF02217.11 g35559.t1 - 0.11 12.8 1.3 0.19 12.1 0.9 1.4 1 0 0 1 1 1 0 Origin of replication binding protein | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:78152-78817 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~78152-78817 MRI PF15325.1 g99924.t1 - 3.9 8.4 10.2 5.6 7.9 6.9 1.4 1 1 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:115103-115602 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~115103-115602 DUF4219 PF13961.1 g54936.t1 - 0.0049 16.2 0.4 0.0076 15.6 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:168996-169241 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~168996-169241 IBV_3A PF03617.8 g8182.t1 - 0.05 13.3 0.3 0.087 12.5 0.2 1.4 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:5673-6328 Augustus predicted protein sequence Tobacco scaffold331_contigs=3~5673-6328 Fib_alpha PF08702.5 g10324.t1 - 0.067 13.3 0.6 0.085 12.9 0.2 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:87133-87417 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~87133-87417 ATP-synt_B PF00430.13 g51294.t1 - 9.1 6 10.9 0.86 9.4 4.4 1.5 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:356639-357091 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~356639-357091 zf-C4 PF00105.13 g59855.t1 - 0.052 13.7 1.8 4.5 7.5 0.2 2.8 1 1 2 3 3 3 0 Zinc finger, C4 type (two domains) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:20482-20940 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~20482-20940 P2X_receptor PF00864.14 g35542.t1 - 0.029 13 0 0.035 12.7 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:18612-19136 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~18612-19136 DUF515 PF04415.7 g116628.t1 - 0.055 11.7 0.1 0.058 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) | Ref_seq=scaffold2672_contigs=4, transcript_loc=scaffold2672_contigs=4:127155-127502 Augustus predicted protein sequence Tobacco scaffold2672_contigs=4~127155-127502 zf-CCHC PF00098.18 g33183.t1 - 0.000035 23.5 1.7 0.000059 22.8 1.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold826_contigs=19, transcript_loc=scaffold826_contigs=19:32862-33296 Augustus predicted protein sequence Tobacco scaffold826_contigs=19~32862-33296 DUF3152 PF11350.3 g91508.t1 - 0.14 11.6 0 8 5.9 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF3152) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:148254-148803 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~148254-148803 FTA4 PF13093.1 g49775.t1 - 0.01 15.2 0 0.012 15 0 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:125023-125460 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~125023-125460 PH_2 PF08458.5 g127028.t1 - 0.067 13.1 0 0.14 12.1 0 1.6 1 1 0 1 1 1 0 Plant pleckstrin homology-like region | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:2446-3381 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~2446-3381 DUF1299 PF06975.6 g35979.t1 - 0.072 12.9 1.6 0.23 11.3 1.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1299) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:94-1719 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~94-1719 ESPR PF13018.1 g130170.t1 - 0.032 13.8 0 0.75 9.4 0 2.8 2 0 0 2 2 2 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold3587_contigs=1, transcript_loc=scaffold3587_contigs=1:104-1907 Augustus predicted protein sequence Tobacco scaffold3587_contigs=1~104-1907 Angiomotin_C PF12240.3 g67111.t1 - 0.076 12.5 0.3 0.082 12.3 0.2 1.2 1 0 0 1 1 1 0 Angiomotin C terminal | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:535483-535953 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~535483-535953 Myosin_tail_1 PF01576.14 g113912.t1 - 0.0057 14.4 0.7 0.0077 14 0.5 1.2 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:723975-724443 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~723975-724443 DUF3099 PF11298.3 g120510.t1 - 0.75 9.5 3.1 18 5.1 0 3 2 1 1 3 3 3 0 Protein of unknown function (DUF3099) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:99709-100296 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~99709-100296 zf-CCHC_5 PF14787.1 g26600.t1 - 1.1 8.7 5.8 2.2 7.8 4 1.5 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:1044-1298 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~1044-1298 GKAP PF03359.8 g76605.t1 - 0.87 9.1 8.8 1.4 8.5 6.1 1.3 1 0 0 1 1 1 0 Guanylate-kinase-associated protein (GKAP) protein | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:257763-258594 Augustus predicted protein sequence Tobacco scaffold1616_contigs=7~257763-258594 gag_pre-integrs PF13976.1 g126771.t1 - 0.0095 15.5 0 0.015 14.8 0 1.3 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold2804_contigs=1, transcript_loc=scaffold2804_contigs=1:24761-25742 Augustus predicted protein sequence Tobacco scaffold2804_contigs=1~24761-25742 Transposase_28 PF04195.7 g45581.t1 - 0.00021 20.6 0 0.00028 20.2 0 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:178220-179052 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~178220-179052 BBS2_C PF14782.1 g95573.t1 - 0.066 11.7 0.1 0.072 11.6 0 1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:81461-82073 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~81461-82073 SprT-like PF10263.4 g97578.t1 - 0.067 12.8 0 0.087 12.4 0 1.2 1 0 0 1 1 1 0 SprT-like family | Ref_seq=scaffold2139_contigs=8, transcript_loc=scaffold2139_contigs=8:42522-43365 Augustus predicted protein sequence Tobacco scaffold2139_contigs=8~42522-43365 E_Pc_C PF06752.7 g17650.t1 - 0.13 11.7 3 0.14 11.6 2 1 1 0 0 1 1 1 0 Enhancer of Polycomb C-terminus | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:9399-9614 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~9399-9614 DUF1510 PF07423.6 g44190.t1 - 0.58 9.4 21.8 0.94 8.8 15.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:190616-192162 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~190616-192162 Zip PF02535.17 g117641.t1 - 0.045 12.7 1.4 0.054 12.4 0.9 1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:215059-215418 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~215059-215418 SpoVR PF04293.8 g129219.t1 - 0.14 10.5 0 0.14 10.5 0 1 1 0 0 1 1 1 0 SpoVR like protein | Ref_seq=scaffold2926_contigs=1, transcript_loc=scaffold2926_contigs=1:18661-19931 Augustus predicted protein sequence Tobacco scaffold2926_contigs=1~18661-19931 KNOX2 PF03791.8 g118548.t1 - 0.12 11.6 0.1 5.1 6.4 0 2.2 2 0 0 2 2 2 0 KNOX2 domain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:162425-162790 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~162425-162790 DUF972 PF06156.8 g117274.t1 - 0.00027 21.2 2.8 0.00061 20 1.9 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF972) | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:37361-38399 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~37361-38399 DUF3725 PF12523.3 g51055.t1 - 0.28 11.2 1.3 130 2.7 0 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF3725) | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:276360-279465 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~276360-279465 ATHILA PF03078.10 g114765.t1 - 0.0041 15.7 0 0.0041 15.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:64050-64301 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~64050-64301 IlvGEDA_leader PF08046.6 g48790.t1 - 0.041 13 0.4 0.041 13 0.3 1.6 2 0 0 2 2 2 0 IlvGEDA operon leader peptide | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:351696-351905 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~351696-351905 WAC_Acf1_DNA_bd PF10537.4 g91541.t1 - 0.064 13.4 0.2 0.36 11 0.2 2.2 1 1 0 1 1 1 0 ATP-utilising chromatin assembly and remodelling N-terminal | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:203455-204055 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~203455-204055 SapB_1 PF05184.10 g92137.t1 - 0.06 13.1 0 0.091 12.6 0 1.2 1 0 0 1 1 1 0 Saposin-like type B, region 1 | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:94622-96141 Augustus predicted protein sequence Tobacco scaffold1983_contigs=2~94622-96141 DUF919 PF06034.6 g102363.t1 - 0.3 10.7 4 0.24 11 0.9 2 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:30434-31030 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~30434-31030 BH4 PF02180.12 g19593.t1 - 0.12 11.8 0 0.19 11.2 0 1.3 1 0 0 1 1 1 0 Bcl-2 homology region 4 | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:78193-78627 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~78193-78627 ThiS-like PF14453.1 g25604.t1 - 0.028 14.2 0.7 0.72 9.7 0 2.6 2 0 0 2 2 2 0 ThiS-like ubiquitin | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:95979-96643 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~95979-96643 UPF0193 PF05250.6 g9224.t1 - 0.09 12.3 0.2 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0193) | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:66326-66859 Augustus predicted protein sequence Tobacco scaffold355_contigs=5~66326-66859 Ribosomal_L15e PF00827.12 g84624.t1 - 0.0062 16 0.9 0.014 14.8 0.6 1.6 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:101238-102928 Augustus predicted protein sequence Tobacco scaffold1824_contigs=4~101238-102928 Peptidase_M20 PF01546.23 g29066.t1 - 0.11 12 0 0.13 11.7 0 1.1 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:43375-43782 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~43375-43782 NESP55 PF06390.7 g53416.t1 - 6.1 6.1 7 10 5.3 4.8 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:274795-275273 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~274795-275273 YtpI PF14007.1 g31336.t1 - 0.0032 17.3 2.7 0.0048 16.7 1.9 1.2 1 0 0 1 1 1 1 YtpI-like protein | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:275129-275933 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~275129-275933 IFT57 PF10498.4 g12748.t1 - 0.071 11.8 4.2 0.11 11.1 2.9 1.3 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:390469-392728 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~390469-392728 DUF4611 PF15387.1 g41281.t1 - 0.012 15.7 0.2 0.016 15.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:29294-29779 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~29294-29779 UBN2 PF14223.1 g48902.t1 - 0.013 15.3 0.4 0.12 12.2 0 2 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:589187-589699 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~589187-589699 Vps5 PF09325.5 g105055.t1 - 0.073 12.3 0.9 0.084 12.1 0.6 1.1 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:175081-175398 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~175081-175398 PROL5-SMR PF15621.1 g102105.t1 - 0.19 12.1 1.9 0.23 11.9 1.3 1.1 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:92705-93043 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~92705-93043 VLPT PF07122.6 g60329.t1 - 0.039 13.6 0.3 2.4 7.8 0 2.4 2 0 0 2 2 2 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold1305_contigs=4, transcript_loc=scaffold1305_contigs=4:171356-172018 Augustus predicted protein sequence Tobacco scaffold1305_contigs=4~171356-172018 EBV-NA3 PF05009.7 g130439.t1 - 0.3 10.2 2.3 0.32 10.2 1.6 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold4518_contigs=1, transcript_loc=scaffold4518_contigs=1:465-698 Augustus predicted protein sequence Tobacco scaffold4518_contigs=1~465-698 Retrotrans_gag PF03732.12 g89892.t1 - 0.061 13.4 0 0.093 12.8 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:97656-98108 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~97656-98108 DUF2121 PF09894.4 g7348.t1 - 0.097 11.9 0 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:60954-62323 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~60954-62323 zf-CCHC PF00098.18 g115497.t1 - 0.0001 22 0.8 0.00015 21.5 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:520377-520661 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~520377-520661 FlgI PF02119.11 g61668.t1 - 0.019 13.6 0.1 0.021 13.4 0 1.1 1 0 0 1 1 1 0 Flagellar P-ring protein | Ref_seq=scaffold1339_contigs=6, transcript_loc=scaffold1339_contigs=6:98380-98763 Augustus predicted protein sequence Tobacco scaffold1339_contigs=6~98380-98763 Collagen PF01391.13 g111029.t1 - 0.071 12.6 9.1 0.14 11.7 6.3 1.5 1 0 0 1 1 1 0 Collagen triple helix repeat (20 copies) | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:90383-91034 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~90383-91034 DUF3902 PF13042.1 g97108.t1 - 0.044 13 0.2 5.1 6.3 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF3902) | Ref_seq=scaffold2127_contigs=9, transcript_loc=scaffold2127_contigs=9:28437-29130 Augustus predicted protein sequence Tobacco scaffold2127_contigs=9~28437-29130 DUF1464 PF07318.7 g3121.t1 - 0.061 12.1 0.1 0.061 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) | Ref_seq=scaffold226_contigs=4, transcript_loc=scaffold226_contigs=4:36379-36813 Augustus predicted protein sequence Tobacco scaffold226_contigs=4~36379-36813 Diacid_rec PF05651.8 g86128.t1 - 0.096 12.1 0 0.16 11.3 0 1.3 1 0 0 1 1 1 0 Putative sugar diacid recognition | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:255791-256189 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~255791-256189 NAP PF00956.13 g46572.t1 - 0.63 9.1 7.9 0.047 12.8 1.1 1.9 1 1 1 2 2 2 0 Nucleosome assembly protein (NAP) | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:168931-169317 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~168931-169317 PBP_sp32 PF07222.7 g19274.t1 - 0.86 8.7 5.1 1.5 7.9 3.5 1.4 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:117382-118167 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~117382-118167 B12D PF06522.6 g119172.t1 - 0.12 12 0 0.19 11.4 0 1.4 1 0 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:21919-22287 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~21919-22287 DUF732 PF05305.9 g36750.t1 - 0.031 14.3 0.1 0.04 13.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF732) | Ref_seq=scaffold896_contigs=10, transcript_loc=scaffold896_contigs=10:357834-358382 Augustus predicted protein sequence Tobacco scaffold896_contigs=10~357834-358382 ATHILA PF03078.10 g9917.t1 - 0.0000043 25.5 0 0.000034 22.6 0 1.9 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:341376-342041 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~341376-342041 V4R PF02830.13 g92965.t1 - 0.19 11.5 1.6 0.29 10.9 1.1 1.3 1 0 0 1 1 1 0 V4R domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:351173-351814 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~351173-351814 DUF3439 PF11921.3 g91382.t1 - 5.7 6.7 6.5 9.2 6 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF3439) | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:60518-60817 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~60518-60817 HALZ PF02183.13 g15283.t1 - 0.0031 17.1 3.6 0.036 13.7 0.1 2.6 1 1 1 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:72993-73370 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~72993-73370 IER PF05760.7 g81373.t1 - 0.033 14.1 1.8 0.042 13.7 1.2 1 1 0 0 1 1 1 0 Immediate early response protein (IER) | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:113025-113573 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~113025-113573 ATHILA PF03078.10 g4289.t1 - 0.000046 22.1 0 0.0004 19 0 1.9 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:37512-38018 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~37512-38018 Chlor_dismutase PF06778.7 g112391.t1 - 0.014 15 0 5.3 6.6 0 2.1 2 0 0 2 2 2 0 Chlorite dismutase | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:58818-59861 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~58818-59861 BUD22 PF09073.5 g71104.t1 - 0.01 14.9 3.4 0.011 14.8 2.4 1.2 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:36682-37479 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~36682-37479 Orbi_VP2 PF00898.12 g50480.t1 - 0.12 9.8 0.1 0.15 9.6 0 1 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP2 | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:90158-90493 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~90158-90493 DUF4402 PF14352.1 g80859.t1 - 0.012 16 0.5 0.017 15.6 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4402) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:186174-186548 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~186174-186548 Claudin_3 PF06653.6 g128277.t1 - 0.066 12.9 0.6 0.081 12.6 0.4 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like | Ref_seq=scaffold2859_contigs=1, transcript_loc=scaffold2859_contigs=1:33636-34093 Augustus predicted protein sequence Tobacco scaffold2859_contigs=1~33636-34093 PBP1_TM PF14812.1 g41517.t1 - 0.06 13.6 1.8 0.077 13.3 1.3 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:168647-169068 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~168647-169068 PEPCK PF00821.13 g63804.t1 - 0.073 11.2 0 0.097 10.8 0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase | Ref_seq=scaffold1382_contigs=2, transcript_loc=scaffold1382_contigs=2:28517-29489 Augustus predicted protein sequence Tobacco scaffold1382_contigs=2~28517-29489 DUF772 PF05598.6 g69733.t1 - 0.094 12.6 0.1 11 6 0 2.1 2 0 0 2 2 2 0 Transposase domain (DUF772) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:1016209-1017896 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~1016209-1017896 Gln-synt_C PF00120.19 g15927.t1 - 0.13 11.3 0.3 0.13 11.3 0.2 1 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:91937-92167 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~91937-92167 zf-CCHC PF00098.18 g8333.t1 - 0.0078 16.1 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:206633-208210 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~206633-208210 Nop25 PF09805.4 g25828.t1 - 1.1 9.3 11.1 1.9 8.5 7.7 1.4 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:160367-161625 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~160367-161625 CtsR PF05848.6 g102373.t1 - 0.12 12.3 0.4 0.14 12 0.3 1.1 1 0 0 1 1 1 0 Firmicute transcriptional repressor of class III stress genes (CtsR) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:48747-49438 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~48747-49438 TT_ORF2 PF02957.10 g5517.t1 - 0.14 12.8 1.2 0.17 12.5 0.4 1.4 2 0 0 2 2 2 0 TT viral ORF2 | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:197607-198028 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~197607-198028 Virul_fac_BrkB PF03631.10 g55421.t1 - 0.025 13.9 0 0.027 13.8 0 1.1 1 0 0 1 1 1 0 Virulence factor BrkB | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:101272-101940 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~101272-101940 DUF3585 PF12130.3 g40321.t1 - 0.075 12.8 0.9 0.1 12.4 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3585) | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:114356-116089 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~114356-116089 HALZ PF02183.13 g104273.t1 - 0.0058 16.3 7.2 0.081 12.6 0.6 3 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:359811-360515 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~359811-360515 RepA1_leader PF08048.7 g26188.t1 - 7.5 6.6 6.5 2.3 8.3 1.4 2 2 0 0 2 2 2 0 Tap RepA1 leader peptide | Ref_seq=scaffold712_contigs=6, transcript_loc=scaffold712_contigs=6:633-863 Augustus predicted protein sequence Tobacco scaffold712_contigs=6~633-863 G6PD_C PF02781.11 g68380.t1 - 0.025 13.4 0 0.028 13.2 0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, C-terminal domain | Ref_seq=scaffold1474_contigs=9, transcript_loc=scaffold1474_contigs=9:103599-104185 Augustus predicted protein sequence Tobacco scaffold1474_contigs=9~103599-104185 Inhibitor_Mig-6 PF11555.3 g24953.t1 - 9.7 6.6 7 14 6.1 0.7 2.1 1 1 1 2 2 2 0 EGFR receptor inhibitor Mig-6 | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:81796-82182 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~81796-82182 TSLP PF15216.1 g43106.t1 - 0.01 15.5 0.6 0.016 14.9 0.4 1.4 1 1 0 1 1 1 0 Thymic stromal lymphopoietin | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:474128-474442 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~474128-474442 PIF1 PF05970.9 g112992.t1 - 0.0000039 26 0.3 0.015 14.2 0.1 2 1 1 1 2 2 2 2 PIF1-like helicase | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:120103-121257 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~120103-121257 ox_reductase_C PF08635.5 g77294.t1 - 0.12 11.7 0 0.2 11 0 1.3 1 0 0 1 1 1 0 Putative oxidoreductase C terminal | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:261207-263053 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~261207-263053 Ipi1_N PF12333.3 g125357.t1 - 0.073 13 0 0.075 13 0 1.3 1 1 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:91306-91599 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~91306-91599 CAF-1_p150 PF11600.3 g4085.t1 - 0.00019 20.8 23.4 0.00019 20.8 16.2 2 2 0 0 2 2 2 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:173080-174045 Augustus predicted protein sequence Tobacco scaffold249_contigs=5~173080-174045 FAD-oxidase_C PF02913.14 g31192.t1 - 0.1 11.9 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain | Ref_seq=scaffold786_contigs=8, transcript_loc=scaffold786_contigs=8:191682-191975 Augustus predicted protein sequence Tobacco scaffold786_contigs=8~191682-191975 DUF4434 PF14488.1 g108779.t1 - 0.12 12 0 0.16 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:199829-200252 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~199829-200252 B12-binding PF02310.14 g23182.t1 - 0.07 13 0 0.11 12.3 0 1.2 1 0 0 1 1 1 0 B12 binding domain | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:8935-9345 Augustus predicted protein sequence Tobacco scaffold639_contigs=2~8935-9345 PE PF00934.15 g45321.t1 - 0.24 11.5 1.9 0.3 11.2 1.3 1.3 1 1 0 1 1 1 0 PE family | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:199156-199416 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~199156-199416 GAS PF13851.1 g71952.t1 - 0.0033 16.6 7.7 0.0047 16.1 5.4 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:206540-207177 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~206540-207177 DUF601 PF04642.7 g1697.t1 - 0.095 12 0.3 0.14 11.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF601 | Ref_seq=scaffold192_contigs=3, transcript_loc=scaffold192_contigs=3:20899-21811 Augustus predicted protein sequence Tobacco scaffold192_contigs=3~20899-21811 VLPT PF07122.6 g25947.t1 - 0.18 11.4 0.5 13 5.5 0 2.5 2 0 0 2 2 2 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:150402-150815 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~150402-150815 DUF1510 PF07423.6 g19927.t1 - 0.092 12.1 8.2 0.11 11.8 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:58382-58917 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~58382-58917 zf-IS66 PF13005.2 g108758.t1 - 3.3 7.7 4.7 6.6 6.7 1.3 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:158098-158463 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~158098-158463 Chorion_3 PF05387.6 g75975.t1 - 0.033 13.6 1 0.036 13.4 0.7 1.1 1 0 0 1 1 1 0 Chorion family 3 | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:151386-153587 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~151386-153587 Cys_rich_CPXG PF14255.1 g1727.t1 - 0.1 12.4 0 0.1 12.4 0 2 2 0 0 2 2 2 0 Cysteine-rich CPXCG | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:33003-34312 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~33003-34312 zf-BED PF02892.10 g92210.t1 - 0.0076 15.9 2.5 0.018 14.8 1.7 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:881-1865 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~881-1865 Corona_nucleoca PF00937.13 g54201.t1 - 0.012 14.5 0.2 0.016 14.1 0.1 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:129243-129785 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~129243-129785 Lzipper-MIP1 PF14389.1 g6297.t1 - 0.057 13.5 0.1 0.1 12.6 0 1.3 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:446315-446809 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~446315-446809 MHCassoc_trimer PF08831.5 g71539.t1 - 0.037 13.8 1.5 0.063 13.1 0.7 1.6 1 1 1 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:243945-244250 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~243945-244250 Cofilin_ADF PF00241.15 g68788.t1 - 0.012 15.5 0 0.013 15.4 0 1 1 0 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:82326-82532 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~82326-82532 DUF2259 PF10016.4 g67615.t1 - 0.14 11.8 0 0.19 11.4 0 1.2 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) | Ref_seq=scaffold1451_contigs=1, transcript_loc=scaffold1451_contigs=1:50054-52034 Augustus predicted protein sequence Tobacco scaffold1451_contigs=1~50054-52034 Leu_zip PF15294.1 g34701.t1 - 0.00071 18.7 3.8 0.00088 18.4 2.6 1.2 1 0 0 1 1 1 1 Leucine zipper | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:107686-108304 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~107686-108304 O-antigen_lig PF13425.1 g13068.t1 - 0.0023 17.9 4.9 0.003 17.5 3.4 1.1 1 0 0 1 1 1 1 O-antigen ligase like membrane protein | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:28786-29193 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~28786-29193 ArsA_ATPase PF02374.10 g107189.t1 - 0.0021 17.1 0 0.0021 17.1 0 1 1 0 0 1 1 1 1 Anion-transporting ATPase | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:862851-864026 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~862851-864026 SVA PF05326.6 g62890.t1 - 0.1 12.3 0 0.18 11.5 0 1.4 1 0 0 1 1 1 0 Seminal vesicle autoantigen (SVA) | Ref_seq=scaffold1358_contigs=1, transcript_loc=scaffold1358_contigs=1:19219-21114 Augustus predicted protein sequence Tobacco scaffold1358_contigs=1~19219-21114 Peptidase_M43 PF05572.8 g37536.t1 - 0.075 12.6 0.4 0.2 11.2 0.1 1.7 1 1 1 2 2 2 0 Pregnancy-associated plasma protein-A | Ref_seq=scaffold927_contigs=11, transcript_loc=scaffold927_contigs=11:300553-302077 Augustus predicted protein sequence Tobacco scaffold927_contigs=11~300553-302077 NESP55 PF06390.7 g110450.t1 - 3.7 6.8 4.9 0.7 9.2 0.4 1.7 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:32395-32820 Augustus predicted protein sequence Tobacco scaffold2547_contigs=8~32395-32820 Transglut_i_TM PF14400.1 g42745.t1 - 0.032 13.7 0.4 0.049 13.1 0.1 1.4 2 0 0 2 2 2 0 Inactive transglutaminase fused to 7 transmembrane helices | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:488764-489198 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~488764-489198 AA_permease PF00324.16 g74638.t1 - 0.095 11 0.9 0.11 10.8 0.6 1.1 1 0 0 1 1 1 0 Amino acid permease | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:30964-32122 Augustus predicted protein sequence Tobacco scaffold1561_contigs=2~30964-32122 Coiled PF05710.7 g2364.t1 - 7.3 7.1 6.3 5.4 7.5 3.2 1.6 1 1 1 2 2 2 0 Coiled coil | Ref_seq=scaffold209_contigs=3, transcript_loc=scaffold209_contigs=3:104478-104714 Augustus predicted protein sequence Tobacco scaffold209_contigs=3~104478-104714 Mg_chelatase PF01078.16 g56777.t1 - 0.063 12.4 0.1 0.1 11.7 0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:807313-808114 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~807313-808114 ATPase_gene1 PF09527.5 g106393.t1 - 0.41 10.4 1.8 23 4.8 0.1 2.3 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:94904-96698 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~94904-96698 Got1 PF04178.7 g60980.t1 - 0.0083 16.2 0.3 0.01 15.9 0.2 1.1 1 0 0 1 1 1 1 Got1/Sft2-like family | Ref_seq=scaffold1325_contigs=9, transcript_loc=scaffold1325_contigs=9:127508-127792 Augustus predicted protein sequence Tobacco scaffold1325_contigs=9~127508-127792 Meleagrin PF08189.6 g102329.t1 - 0.015 14.7 0.4 0.42 10.1 0 2.3 2 0 0 2 2 2 0 Meleagrin/Cygnin family | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:41804-43663 Augustus predicted protein sequence Tobacco scaffold2237_contigs=22~41804-43663 RVT_3 PF13456.1 g67497.t1 - 0.00000091 28.5 0.1 0.0000027 27 0 1.7 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:376832-377805 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~376832-377805 NAM-associated PF14303.1 g59179.t1 - 0.00083 19.6 1.1 0.00093 19.5 0.7 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1284_contigs=5, transcript_loc=scaffold1284_contigs=5:13884-14276 Augustus predicted protein sequence Tobacco scaffold1284_contigs=5~13884-14276 VGCC_beta4Aa_N PF12052.3 g55737.t1 - 0.069 13 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1224_contigs=4, transcript_loc=scaffold1224_contigs=4:10234-10596 Augustus predicted protein sequence Tobacco scaffold1224_contigs=4~10234-10596 Protamine_P2 PF00841.14 g92636.t1 - 0.41 11.2 11.8 0.54 10.8 8.2 1.2 1 0 0 1 1 1 0 Sperm histone P2 | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:194061-195278 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~194061-195278 HrpA_pilin PF09589.5 g110989.t1 - 0.051 14 0.3 0.14 12.6 0.2 1.6 1 1 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold2572_contigs=14, transcript_loc=scaffold2572_contigs=14:1-1459 Augustus predicted protein sequence Tobacco scaffold2572_contigs=14~1-1459 HisKA_2 PF07568.7 g30621.t1 - 0.0081 15.9 1 3.1 7.6 0.1 2.2 2 0 0 2 2 2 2 Histidine kinase | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:36686-37131 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~36686-37131 Phage_integrase PF00589.17 g129856.t1 - 0.12 12 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:4523-4867 Augustus predicted protein sequence Tobacco scaffold3123_contigs=1~4523-4867 DUF4219 PF13961.1 g69533.t1 - 0.000019 23.9 0.2 0.000027 23.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:368171-368410 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~368171-368410 RXT2_N PF08595.6 g29594.t1 - 0.00058 19.6 6 0.00073 19.3 4.2 1.1 1 0 0 1 1 1 1 RXT2-like, N-terminal | Ref_seq=scaffold762_contigs=4, transcript_loc=scaffold762_contigs=4:58865-59617 Augustus predicted protein sequence Tobacco scaffold762_contigs=4~58865-59617 Fe-S_assembly PF04384.8 g90430.t1 - 0.00006 23.3 0 0.072 13.4 0 2.1 2 0 0 2 2 2 2 Iron-sulphur cluster assembly | Ref_seq=scaffold1962_contigs=17, transcript_loc=scaffold1962_contigs=17:539233-539662 Augustus predicted protein sequence Tobacco scaffold1962_contigs=17~539233-539662 ATHILA PF03078.10 g127640.t1 - 0.0000043 25.5 0 0.000005 25.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:27960-28337 Augustus predicted protein sequence Tobacco scaffold2832_contigs=1~27960-28337 Glyco_hydro_66 PF13199.1 g34499.t1 - 0.088 11.1 0.4 0.12 10.8 0.3 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:155183-156085 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~155183-156085 SSP160 PF06933.6 g128824.t1 - 0.07 11.1 1.7 0.068 11.1 1.1 1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 | Ref_seq=scaffold2892_contigs=1, transcript_loc=scaffold2892_contigs=1:9165-9416 Augustus predicted protein sequence Tobacco scaffold2892_contigs=1~9165-9416 DUF4521 PF15021.1 g67372.t1 - 0.09 12.3 0.1 0.11 12 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:162491-163600 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~162491-163600 Borrelia_orfA PF02414.10 g107455.t1 - 0.0091 15.1 6.5 0.01 14.9 4.5 1.1 1 0 0 1 1 1 1 Borrelia ORF-A | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:49613-50044 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~49613-50044 Birna_VP5 PF03042.9 g54139.t1 - 0.15 11.5 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Birnavirus VP5 protein | Ref_seq=scaffold1203_contigs=3, transcript_loc=scaffold1203_contigs=3:28155-28442 Augustus predicted protein sequence Tobacco scaffold1203_contigs=3~28155-28442 APG6 PF04111.7 g34834.t1 - 0.036 13 12.5 0.044 12.8 8.7 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:35405-35686 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~35405-35686 Myticin-prepro PF10690.4 g9578.t1 - 0.15 12 3.6 0.42 10.6 2.5 1.7 1 1 0 1 1 1 0 Myticin pre-proprotein from the mussel | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:81642-81863 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~81642-81863 7TM_transglut PF14402.1 g89852.t1 - 0.073 11.9 0.1 0.09 11.6 0 1.1 1 0 0 1 1 1 0 7 transmembrane helices usually fused to an inactive transglutaminase | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:133-366 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~133-366 UPF0104 PF03706.8 g124339.t1 - 0.061 12.5 0.1 0.082 12.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1961959-1962503 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1961959-1962503 DUF2413 PF10310.4 g40750.t1 - 1 8 6.3 1.3 7.7 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:475906-476625 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~475906-476625 Tropomyosin PF00261.15 g60667.t1 - 0.17 10.9 0 0.23 10.4 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:228965-231013 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~228965-231013 YdjO PF14169.1 g128232.t1 - 0.088 12.2 0.7 0.2 11.1 0.5 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:28586-30230 Augustus predicted protein sequence Tobacco scaffold2856_contigs=1~28586-30230 AflR PF08493.5 g77701.t1 - 4.1 6.3 10.2 5 6 7 1.1 1 0 0 1 1 1 0 Aflatoxin regulatory protein | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:125354-125762 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~125354-125762 GRA6 PF05084.8 g111780.t1 - 0.24 10.8 2.8 0.26 10.7 1.9 1.1 1 0 0 1 1 1 0 Granule antigen protein (GRA6) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:194628-194897 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~194628-194897 DUF1985 PF09331.6 g98103.t1 - 8.2E-009 35.4 0 0.000000012 34.9 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:134291-136234 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~134291-136234 TerC PF03741.11 g89894.t1 - 0.087 12.2 0 0.097 12 0 1.2 1 0 0 1 1 1 0 Integral membrane protein TerC family | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:100547-101294 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~100547-101294 Delta_lysin PF05372.6 g5020.t1 - 0.0000054 25.6 0.1 0.089 12.1 0 2.3 2 0 0 2 2 2 2 Delta lysin family | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:141053-143016 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~141053-143016 FrhB_FdhB_N PF04422.8 g25035.t1 - 0.031 14.1 0 0.057 13.2 0 1.4 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:123967-125376 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~123967-125376 Anth_synt_I_N PF04715.8 g32608.t1 - 0.032 14.2 0 0.033 14.2 0 1.1 1 0 0 1 1 1 0 Anthranilate synthase component I, N terminal region | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:471887-472090 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~471887-472090 Shadoo PF14999.1 g91582.t1 - 0.16 11.8 8.1 0.21 11.4 5.6 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective | Ref_seq=scaffold1974_contigs=1, transcript_loc=scaffold1974_contigs=1:5854-6263 Augustus predicted protein sequence Tobacco scaffold1974_contigs=1~5854-6263 ORF6N PF10543.4 g118236.t1 - 0.12 12.4 0 0.14 12.2 0 1.3 1 0 0 1 1 1 0 ORF6N domain | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:159625-160030 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~159625-160030 RecR PF02132.10 g95822.t1 - 0.025 14 0.2 0.038 13.4 0.1 1.3 1 0 0 1 1 1 0 RecR protein | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:26398-26598 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~26398-26598 Matrilin_ccoil PF10393.4 g129812.t1 - 0.13 11.6 0 0.23 10.8 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3076_contigs=1, transcript_loc=scaffold3076_contigs=1:3125-3598 Augustus predicted protein sequence Tobacco scaffold3076_contigs=1~3125-3598 FH2 PF02181.18 g36500.t1 - 0.11 11.3 0.1 0.17 10.7 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:115676-116608 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~115676-116608 Lactamase_B_4 PF13691.1 g67597.t1 - 0.049 13.1 0 0.065 12.7 0 1.3 1 0 0 1 1 1 0 tRNase Z endonuclease | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:21788-22051 Augustus predicted protein sequence Tobacco scaffold1450_contigs=4~21788-22051 YcbB PF08664.5 g110920.t1 - 0.023 14.4 0.1 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 YcbB domain | Ref_seq=scaffold2569_contigs=14, transcript_loc=scaffold2569_contigs=14:135694-135954 Augustus predicted protein sequence Tobacco scaffold2569_contigs=14~135694-135954 TRAP_alpha PF03896.11 g315.t1 - 0.099 11.6 0.8 1.6 7.6 0.7 1.9 1 1 1 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold13_contigs=1, transcript_loc=scaffold13_contigs=1:257-1243 Augustus predicted protein sequence Tobacco scaffold13_contigs=1~257-1243 Sushi_2 PF09014.5 g104214.t1 - 0.11 12.2 0 1.2 8.9 0 2.5 3 0 0 3 3 3 0 Beta-2-glycoprotein-1 fifth domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:147352-148357 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~147352-148357 CAF-1_p150 PF11600.3 g34758.t1 - 0.00003 23.4 20.1 0.00003 23.4 13.9 2.7 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:254984-256303 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~254984-256303 YozD PF14162.1 g82623.t1 - 0.063 13.3 0 0.09 12.8 0 1.2 1 0 0 1 1 1 0 YozD-like protein | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:33762-34001 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~33762-34001 DUF3648 PF12364.3 g44169.t1 - 0.16 12 0.2 0.17 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3648) | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:131052-131303 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~131052-131303 IZUMO PF15005.1 g55854.t1 - 0.0022 18 0.3 0.0025 17.8 0.2 1 1 0 0 1 1 1 1 Izumo sperm-egg fusion | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:106687-107661 Augustus predicted protein sequence Tobacco scaffold1233_contigs=6~106687-107661 DUF1425 PF07233.7 g6524.t1 - 0.0048 16.4 0 0.0081 15.6 0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1425) | Ref_seq=scaffold299_contigs=2, transcript_loc=scaffold299_contigs=2:11395-13219 Augustus predicted protein sequence Tobacco scaffold299_contigs=2~11395-13219 CTK3_C PF12350.3 g11268.t1 - 0.028 14.4 0.2 0.028 14.4 0.1 1.7 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 C-terminus | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:72966-75948 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~72966-75948 CAF-1_p150 PF11600.3 g114669.t1 - 0.013 14.8 24.5 0.017 14.5 17 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:174071-175139 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~174071-175139 zf-CCHC PF00098.18 g116557.t1 - 0.000084 22.3 0.8 0.00014 21.5 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:383339-383788 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~383339-383788 CENP-H PF05837.7 g96335.t1 - 0.061 13.4 1 0.066 13.3 0.7 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:138326-138556 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~138326-138556 DSHCT PF08148.7 g112123.t1 - 0.024 13.8 0 0.026 13.7 0 1 1 0 0 1 1 1 0 DSHCT (NUC185) domain | Ref_seq=scaffold2603_contigs=7, transcript_loc=scaffold2603_contigs=7:66206-66424 Augustus predicted protein sequence Tobacco scaffold2603_contigs=7~66206-66424 Nop14 PF04147.7 g78750.t1 - 0.002 16.1 4.5 0.002 16.1 3.1 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:86123-86635 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~86123-86635 HTH_33 PF13592.1 g130515.t1 - 0.075 12.5 0 0.11 12 0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix | Ref_seq=scaffold4812_contigs=1, transcript_loc=scaffold4812_contigs=1:207-485 Augustus predicted protein sequence Tobacco scaffold4812_contigs=1~207-485 DUF4643 PF15485.1 g128892.t1 - 6.7 6 13.8 0.16 11.3 2.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4643) | Ref_seq=scaffold2898_contigs=1, transcript_loc=scaffold2898_contigs=1:1404-2095 Augustus predicted protein sequence Tobacco scaffold2898_contigs=1~1404-2095 Cas_Csy2 PF09614.5 g122145.t1 - 0.12 11.6 0.1 0.18 10.9 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy2) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:350591-351241 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~350591-351241 YfzA PF14118.1 g1797.t1 - 0.12 12.5 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 YfzA-like protein | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:33767-36719 Augustus predicted protein sequence Tobacco scaffold194_contigs=2~33767-36719 GcrA PF07750.6 g52100.t1 - 0.032 14.4 1.5 1.3 9.2 0.1 2.4 1 1 1 2 2 2 0 GcrA cell cycle regulator | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:394185-394883 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~394185-394883 Myosin_N PF02736.14 g18969.t1 - 2.7 7.7 5.5 13 5.5 0.4 2.4 1 1 1 2 2 2 0 Myosin N-terminal SH3-like domain | Ref_seq=scaffold560_contigs=4, transcript_loc=scaffold560_contigs=4:170849-171100 Augustus predicted protein sequence Tobacco scaffold560_contigs=4~170849-171100 Chromo PF00385.19 g49039.t1 - 0.000035 23.3 0 0.000051 22.8 0 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:34304-34696 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~34304-34696 EF-hand_7 PF13499.1 g102870.t1 - 0.0094 16 0 0.013 15.6 0 1.3 1 1 0 1 1 1 1 EF-hand domain pair | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:79589-79831 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~79589-79831 DUF1118 PF06549.7 g6067.t1 - 0.047 13.8 0.1 0.056 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:39529-41416 Augustus predicted protein sequence Tobacco scaffold291_contigs=11~39529-41416 Scaffolding_pro PF11418.3 g25415.t1 - 0.14 12.5 0.2 0.21 11.9 0.1 1.2 1 0 0 1 1 1 0 Phi29 scaffolding protein | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:249284-250039 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~249284-250039 Cytadhesin_P30 PF07271.6 g67436.t1 - 8.3 5.5 8.8 7.6 5.7 6.1 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:269943-270265 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~269943-270265 AAA_16 PF13191.1 g46199.t1 - 0.0024 17.8 0 0.0038 17.2 0 1.3 1 0 0 1 1 1 1 AAA ATPase domain | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:50677-51006 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~50677-51006 DUF3113 PF11310.3 g109634.t1 - 0.04 13.5 0 0.15 11.7 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3113) | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:187156-187359 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~187156-187359 RLL PF10036.4 g95903.t1 - 0.15 11.4 6.4 0.18 11.2 4.4 1.2 1 0 0 1 1 1 0 Putative carnitine deficiency-associated protein | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:310790-311221 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~310790-311221 CAP_N PF01213.14 g49198.t1 - 0.21 10.8 10.3 0.37 10 7.1 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:36468-37082 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~36468-37082 Glyco_hydro_42C PF08533.5 g11264.t1 - 0.11 11.9 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:51279-51578 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~51279-51578 DUF3357 PF11837.3 g106909.t1 - 0.35 10.7 2.8 0.13 12.1 0.4 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:175926-176174 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~175926-176174 Tropomyosin_1 PF12718.2 g66273.t1 - 0.021 14.6 0.7 0.025 14.4 0.5 1.2 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:85501-85887 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~85501-85887 HCR PF07111.7 g64072.t1 - 0.031 12.3 0 0.032 12.2 0 1 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:274557-274913 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~274557-274913 DIRP PF06584.8 g108997.t1 - 0.013 15.3 0.3 0.017 15 0.2 1.1 1 0 0 1 1 1 0 DIRP | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:125242-125526 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~125242-125526 DUF1985 PF09331.6 g27586.t1 - 0.017 14.9 0 0.038 13.8 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold728_contigs=3, transcript_loc=scaffold728_contigs=3:31493-33436 Augustus predicted protein sequence Tobacco scaffold728_contigs=3~31493-33436 PBP1_TM PF14812.1 g120218.t1 - 0.94 9.8 3.5 1.2 9.4 2.4 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold2721_contigs=4, transcript_loc=scaffold2721_contigs=4:35630-36668 Augustus predicted protein sequence Tobacco scaffold2721_contigs=4~35630-36668 Cnl2_NKP2 PF09447.5 g88112.t1 - 0.066 12.9 5.1 0.082 12.5 3.2 1.4 1 1 0 1 1 1 0 Cnl2/NKP2 family protein | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:154577-155075 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~154577-155075 BUD22 PF09073.5 g48935.t1 - 0.2 10.6 30 0.23 10.4 20.8 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1110_contigs=2, transcript_loc=scaffold1110_contigs=2:26021-26763 Augustus predicted protein sequence Tobacco scaffold1110_contigs=2~26021-26763 DBD_Tnp_Mut PF03108.10 g83067.t1 - 0.00078 18.9 0 0.0018 17.8 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:46569-46955 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~46569-46955 Pinin_SDK_memA PF04696.8 g4175.t1 - 0.044 13.3 1.5 0.065 12.8 1 1.2 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:41284-42292 Augustus predicted protein sequence Tobacco scaffold254_contigs=6~41284-42292 tRNA_synt_1c_R2 PF04557.10 g13730.t1 - 0.086 13.5 0.3 0.11 13.2 0.2 1.2 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:43762-44364 Augustus predicted protein sequence Tobacco scaffold453_contigs=2~43762-44364 Phage_GPO PF05929.6 g74388.t1 - 0.066 12.4 2 0.071 12.3 1.4 1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:116180-116557 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~116180-116557 zf-CCHC PF00098.18 g69755.t1 - 0.078 12.9 0.8 0.078 12.9 0.5 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:58837-59055 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~58837-59055 zf-CCHC PF00098.18 g47351.t1 - 0.0017 18.2 0.3 0.003 17.4 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1095_contigs=4, transcript_loc=scaffold1095_contigs=4:16152-16711 Augustus predicted protein sequence Tobacco scaffold1095_contigs=4~16152-16711 DBD_Tnp_Mut PF03108.10 g58085.t1 - 0.0000018 27.4 0.1 0.0000031 26.6 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:328718-329179 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~328718-329179 NUT_C PF12882.2 g110997.t1 - 0.00024 20.7 0.5 40 3.7 0 4.8 4 1 0 5 5 5 0 NUT protein C terminal | Ref_seq=scaffold2573_contigs=5, transcript_loc=scaffold2573_contigs=5:1-8357 Augustus predicted protein sequence Tobacco scaffold2573_contigs=5~1-8357 TP2 PF01254.13 g100950.t1 - 0.022 15.1 0.1 0.026 14.8 0 1.1 1 0 0 1 1 1 0 Nuclear transition protein 2 | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:381135-381455 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~381135-381455 DUF2156 PF09924.4 g29189.t1 - 0.052 12.3 0 0.065 12 0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:253405-255572 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~253405-255572 Pro_racemase PF05544.6 g5015.t1 - 0.1 11.3 0 0.24 10.1 0 1.6 2 0 0 2 2 2 0 Proline racemase | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:112358-112729 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~112358-112729 DUF2423 PF10338.4 g110481.t1 - 1.5 8.8 6 3.4 7.6 4.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:58175-59220 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~58175-59220 ATHILA PF03078.10 g38157.t1 - 0.00019 20.1 0 0.00019 20.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:304430-304750 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~304430-304750 PP1_bind PF15276.1 g101325.t1 - 0.32 11 3.6 2.6 8.1 0.1 2.6 2 1 0 2 2 2 0 Protein phosphatase 1 binding | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:37021-38749 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~37021-38749 DUF605 PF04652.11 g103014.t1 - 0.15 11.3 7.1 0.17 11.2 4.9 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2278_contigs=9, transcript_loc=scaffold2278_contigs=9:173475-174679 Augustus predicted protein sequence Tobacco scaffold2278_contigs=9~173475-174679 DNA_pol3_a_NII PF11490.3 g106938.t1 - 0.11 12 4.7 0.13 11.8 3.3 1.1 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus II | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:29831-31217 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~29831-31217 RVT_3 PF13456.1 g43868.t1 - 0.042 13.6 0.2 0.19 11.5 0.2 1.9 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:201872-202521 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~201872-202521 SPATA6 PF14909.1 g116506.t1 - 0.072 13.1 3.8 0.24 11.4 0.3 2.2 1 1 0 2 2 2 0 Spermatogenesis-assoc protein 6 | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:265636-266355 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~265636-266355 RNase_P_pop3 PF08228.6 g69561.t1 - 0.04 13.7 0.2 0.062 13.1 0.2 1.2 1 0 0 1 1 1 0 RNase P subunit Pop3 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:441874-442506 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~441874-442506 Prefoldin_2 PF01920.15 g67380.t1 - 0.037 13.7 0.1 0.044 13.5 0.1 1.1 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:185909-186601 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~185909-186601 N_NLPC_P60 PF12912.2 g15244.t1 - 0.085 12.9 0.2 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:294730-295089 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~294730-295089 TMV_coat PF00721.16 g117166.t1 - 0.0047 16.8 0.7 0.0071 16.2 0.5 1.2 1 1 0 1 1 1 1 Virus coat protein (TMV like) | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:70758-71015 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~70758-71015 ATHILA PF03078.10 g73797.t1 - 0.16 10.5 0 0.18 10.3 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:27368-28393 Augustus predicted protein sequence Tobacco scaffold1548_contigs=4~27368-28393 RasGAP_C PF03836.10 g91384.t1 - 0.042 13.5 2.9 0.43 10.2 0.3 2 2 0 0 2 2 2 0 RasGAP C-terminus | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:67390-67797 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~67390-67797 Pox_A22 PF04848.8 g44276.t1 - 0.14 12 0 0.17 11.7 0 1.2 1 0 0 1 1 1 0 Poxvirus A22 protein | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:145992-146489 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~145992-146489 DUF3787 PF12655.2 g72322.t1 - 1.3 8.8 4.6 1 9.1 0.2 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3787) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:795156-796098 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~795156-796098 YvbH_ext PF11724.3 g23115.t1 - 0.059 13 0 0.12 12.1 0 1.5 1 1 0 1 1 1 0 YvbH-like oligomerisation region | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:154714-155300 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~154714-155300 DBD_Tnp_Mut PF03108.10 g77637.t1 - 3.7E-009 36 1.6 5.4E-009 35.5 1.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:1104-1664 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~1104-1664 LRRNT_2 PF08263.7 g3904.t1 - 0.079 12.9 0.2 0.079 12.9 0.1 1.8 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:35322-35567 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~35322-35567 FH2 PF02181.18 g60910.t1 - 0.062 12.1 0.3 0.12 11.2 0 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1323_contigs=1, transcript_loc=scaffold1323_contigs=1:6407-7234 Augustus predicted protein sequence Tobacco scaffold1323_contigs=1~6407-7234 IFT57 PF10498.4 g38636.t1 - 0.00039 19.2 8.8 0.00052 18.8 6.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:231590-232241 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~231590-232241 YqbF PF14553.1 g61734.t1 - 0.17 11.6 0.4 2.6 7.7 0.1 2.1 2 0 0 2 2 2 0 YqbF, hypothetical protein domain | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:222747-223022 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~222747-223022 TrbE PF11100.3 g42725.t1 - 1.6 8.6 4.9 0.61 9.9 0.7 2 2 0 0 2 2 2 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:425395-426641 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~425395-426641 DUF4116 PF13475.1 g72215.t1 - 0.0062 16 0.1 6.4 6.3 0 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF4116) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:525589-527032 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~525589-527032 DUF4551 PF15087.1 g52145.t1 - 1.1 7.5 4.5 1.1 7.5 3.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:524593-524907 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~524593-524907 UL73_N PF12522.3 g1077.t1 - 0.88 9.1 9 1.6 8.3 6.3 1.4 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein N terminal | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:249179-249755 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~249179-249755 MHCassoc_trimer PF08831.5 g32152.t1 - 0.17 11.7 4 0.15 11.9 1.4 1.9 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:185851-186207 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~185851-186207 DUF4230 PF14014.1 g25308.t1 - 0.061 13.1 1.4 0.067 13 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4230) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:41246-41610 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~41246-41610 Bim_N PF06773.6 g63923.t1 - 5.4 6.8 6.5 0.59 9.9 1.2 1.9 2 0 0 2 2 2 0 Bim protein N-terminus | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:316836-317141 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~316836-317141 DUF4407 PF14362.1 g18985.t1 - 0.36 9.7 1.8 0.5 9.2 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:28476-30413 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~28476-30413 DegS PF05384.6 g97794.t1 - 0.003 16.7 0.4 0.0039 16.4 0.3 1.2 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:182184-182569 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~182184-182569 CDC37_N PF03234.9 g18595.t1 - 1.3 9.3 5.7 0.18 12.1 0.6 1.8 2 0 0 2 2 2 0 Cdc37 N terminal kinase binding | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:288179-288457 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~288179-288457 Sbi-IV PF11621.3 g86376.t1 - 0.12 12.5 0.1 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 C3 binding domain 4 of IgG-bind protein SBI | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:273-671 Augustus predicted protein sequence Tobacco scaffold1848_contigs=19~273-671 Bac_globin PF01152.16 g85181.t1 - 0.017 15.1 0 0.021 14.8 0 1.2 1 1 0 1 1 1 0 Bacterial-like globin | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:391279-391792 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~391279-391792 PDR_CDR PF06422.7 g84903.t1 - 0.3 10.7 1.8 0.6 9.7 1.2 1.5 1 0 0 1 1 1 0 CDR ABC transporter | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:61821-62273 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~61821-62273 MGC-24 PF05283.6 g51201.t1 - 0.15 11.8 2.2 0.18 11.6 1.5 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:62839-63306 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~62839-63306 TC1 PF15063.1 g39822.t1 - 0.015 14.8 0 0.035 13.6 0 1.6 1 0 0 1 1 1 0 Thyroid cancer protein 1 | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:291909-292544 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~291909-292544 zf-CCHC PF00098.18 g50804.t1 - 0.00011 21.9 1 0.00016 21.3 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:200976-201548 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~200976-201548 Toxin_44 PF15523.1 g124565.t1 - 0.021 14.6 0 0.032 14.1 0 1.3 1 0 0 1 1 1 0 Putative toxin 44 | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:18577-18789 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~18577-18789 DUF1682 PF07946.9 g67100.t1 - 0.02 13.7 10.3 0.025 13.4 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:522386-523084 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~522386-523084 zf-CCHC_4 PF14392.1 g86736.t1 - 0.078 12.6 0.5 0.17 11.5 0.4 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:2431-3668 Augustus predicted protein sequence Tobacco scaffold1861_contigs=7~2431-3668 NADH_dh_m_C1 PF15088.1 g57617.t1 - 0.12 11.9 0 0.25 10.8 0 1.5 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:11374-12947 Augustus predicted protein sequence Tobacco scaffold1253_contigs=5~11374-12947 Herpes_TAF50 PF03326.8 g42186.t1 - 0.045 12.6 0.9 0.054 12.4 0.6 1 1 0 0 1 1 1 0 Herpesvirus transcription activation factor (transactivator) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:80246-80548 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~80246-80548 B2 PF11473.3 g37640.t1 - 0.12 11.9 0 0.15 11.6 0 1.1 1 0 0 1 1 1 0 RNA binding protein B2 | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:106759-106962 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~106759-106962 FAM222A PF15258.1 g2316.t1 - 0.03 13.5 0.1 0.031 13.4 0 1 1 0 0 1 1 1 0 Protein family of FAM222A | Ref_seq=scaffold208_contigs=2, transcript_loc=scaffold208_contigs=2:27800-28081 Augustus predicted protein sequence Tobacco scaffold208_contigs=2~27800-28081 DUF3218 PF11508.3 g25933.t1 - 0.12 11.8 0 0.18 11.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3218) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:94283-95736 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~94283-95736 WHIM3 PF15614.1 g41755.t1 - 0.034 13.9 0.2 0.04 13.7 0.1 1.2 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 3 | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:145783-146177 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~145783-146177 DUF3246 PF11596.3 g32035.t1 - 0.027 13.7 1.8 0.029 13.6 1.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3246) | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:175020-176435 Augustus predicted protein sequence Tobacco scaffold802_contigs=3~175020-176435 HALZ PF02183.13 g1599.t1 - 0.00056 19.5 9 0.026 14.2 2.4 2.4 2 0 0 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold187_contigs=1, transcript_loc=scaffold187_contigs=1:13998-14523 Augustus predicted protein sequence Tobacco scaffold187_contigs=1~13998-14523 HIG_1_N PF04588.8 g57074.t1 - 0.044 13.5 0.1 0.073 12.8 0.1 1.4 1 0 0 1 1 1 0 Hypoxia induced protein conserved region | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:215829-216080 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~215829-216080 Med15 PF09606.5 g4384.t1 - 0.76 7.9 10.4 0.88 7.6 7.2 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:122294-122635 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~122294-122635 Mucin PF01456.12 g12132.t1 - 0.058 13.1 0.9 0.066 12.9 0.6 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:31448-31795 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~31448-31795 UBN2_2 PF14227.1 g55530.t1 - 0.0035 16.8 0 0.0071 15.9 0 1.6 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:336740-337123 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~336740-337123 DUF2883 PF11097.3 g26324.t1 - 0.068 13.2 0 0.13 12.4 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2883) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:76489-77033 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~76489-77033 YfmQ PF10787.4 g50726.t1 - 0.15 11.4 0 0.19 11 0 1.1 1 0 0 1 1 1 0 Uncharacterised protein from bacillus cereus group | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:111857-112237 Augustus predicted protein sequence Tobacco scaffold1144_contigs=4~111857-112237 DUF329 PF03884.9 g39426.t1 - 0.04 13.4 0.3 0.067 12.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold956_contigs=10, transcript_loc=scaffold956_contigs=10:56073-56339 Augustus predicted protein sequence Tobacco scaffold956_contigs=10~56073-56339 1-cysPrx_C PF10417.4 g63991.t1 - 0.035 13.7 0.4 0.13 11.8 0.3 2.1 1 0 0 1 1 1 0 C-terminal domain of 1-Cys peroxiredoxin | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:93286-94975 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~93286-94975 Ubiquitin_2 PF14560.1 g51679.t1 - 0.066 13.4 0 0.13 12.4 0 1.5 1 0 0 1 1 1 0 Ubiquitin-like domain | Ref_seq=scaffold1163_contigs=2, transcript_loc=scaffold1163_contigs=2:1896-3665 Augustus predicted protein sequence Tobacco scaffold1163_contigs=2~1896-3665 HPS3_Mid PF14762.1 g103477.t1 - 0.09 11.3 0 0.095 11.2 0 1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3, middle region | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:732127-732496 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~732127-732496 KH_5 PF13184.1 g124166.t1 - 0.042 13.6 0 0.053 13.3 0 1.3 1 0 0 1 1 1 0 NusA-like KH domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1468694-1468921 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1468694-1468921 DUF1743 PF08489.6 g114050.t1 - 0.12 12.1 0.4 0.27 10.9 0 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1743) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:152406-152843 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~152406-152843 DUF3403 PF11883.3 g6852.t1 - 0.028 14.6 1.1 0.045 14 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3403) | Ref_seq=scaffold305_contigs=7, transcript_loc=scaffold305_contigs=7:79900-81017 Augustus predicted protein sequence Tobacco scaffold305_contigs=7~79900-81017 ATHILA PF03078.10 g87562.t1 - 0.0033 16 0 0.0039 15.8 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1884_contigs=4, transcript_loc=scaffold1884_contigs=4:61906-62524 Augustus predicted protein sequence Tobacco scaffold1884_contigs=4~61906-62524 DNA_pol_viral_N PF00242.12 g12090.t1 - 0.093 11.7 0.1 0.1 11.5 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:17923-18297 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~17923-18297 HTH_38 PF13936.1 g12985.t1 - 0.032 13.7 0.1 4.9 6.7 0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:78121-78354 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~78121-78354 Peptidase_C7 PF01830.13 g65319.t1 - 0.013 14.6 0.7 0.015 14.4 0.5 1.1 1 0 0 1 1 1 0 Peptidase C7 family | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:23067-23530 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~23067-23530 Prefoldin_3 PF13758.1 g103218.t1 - 0.001 18.7 0.8 0.89 9.3 0.1 2.3 2 0 0 2 2 2 2 Prefoldin subunit | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:160216-162390 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~160216-162390 NeuB PF03102.9 g106408.t1 - 0.013 14.6 0.2 0.26 10.4 0 1.9 1 1 0 2 2 2 0 NeuB family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:128314-128517 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~128314-128517 LPAM_1 PF08139.7 g80219.t1 - 0.039 14.1 2.2 0.084 13.1 1.5 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site | Ref_seq=scaffold1712_contigs=1, transcript_loc=scaffold1712_contigs=1:1417-1797 Augustus predicted protein sequence Tobacco scaffold1712_contigs=1~1417-1797 Leucyl-specific PF14795.1 g74866.t1 - 0.13 12 0.1 0.22 11.4 0 1.3 1 0 0 1 1 1 0 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:246588-248633 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~246588-248633 Rhabdo_M2 PF04785.7 g68965.t1 - 0.098 11.6 0.3 0.12 11.3 0.2 1.1 1 0 0 1 1 1 0 Rhabdovirus matrix protein M2 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:210313-210618 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~210313-210618 RNase_H2-Ydr279 PF09468.5 g118346.t1 - 0.095 11.8 4 0.098 11.8 2.8 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:511022-511426 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~511022-511426 DUF2913 PF11140.3 g104734.t1 - 0.085 12.1 1.3 0.14 11.3 0.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2913) | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:151799-152509 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~151799-152509 RVT_3 PF13456.1 g32800.t1 - 0.00047 19.8 0 0.00072 19.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:28577-28915 Augustus predicted protein sequence Tobacco scaffold819_contigs=1~28577-28915 DUF4407 PF14362.1 g17762.t1 - 0.07 12 0.3 0.085 11.7 0.2 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:128849-129136 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~128849-129136 Mem_trans PF03547.13 g109130.t1 - 0.052 11.8 0 0.067 11.4 0 1.1 1 0 0 1 1 1 0 Membrane transport protein | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:84538-85147 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~84538-85147 RNA_pol_3_Rpc31 PF11705.3 g30242.t1 - 3.3 7.5 7.9 3.3 7.5 5.5 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:108459-108686 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~108459-108686 EVI2A PF05399.6 g60597.t1 - 0.065 12.4 0.1 0.083 12.1 0.1 1.1 1 0 0 1 1 1 0 Ectropic viral integration site 2A protein (EVI2A) | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:9710-10489 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~9710-10489 vMSA PF00695.14 g120741.t1 - 0.74 8.9 2.7 0.86 8.7 1.9 1.1 1 0 0 1 1 1 0 Major surface antigen from hepadnavirus | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:21188-22769 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~21188-22769 RL11D PF11088.3 g60245.t1 - 0.009 15.7 0 0.018 14.8 0 1.5 1 0 0 1 1 1 1 Glycoprotein encoding membrane proteins RL5A and RL6 | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:23194-24079 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~23194-24079 DUF605 PF04652.11 g25273.t1 - 4.4 6.6 27.7 5.6 6.2 19.2 1.3 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold692_contigs=2, transcript_loc=scaffold692_contigs=2:2072-2794 Augustus predicted protein sequence Tobacco scaffold692_contigs=2~2072-2794 DUF1510 PF07423.6 g69304.t1 - 0.17 11.1 13.5 0.21 10.9 9.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:68325-69656 Augustus predicted protein sequence Tobacco scaffold1485_contigs=2~68325-69656 Mating_C PF12737.2 g498.t1 - 0.035 12.9 2.4 0.038 12.9 1.7 1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:36752-37120 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~36752-37120 Serglycin PF04360.7 g13260.t1 - 2.3 7.9 9.3 2.3 7.9 6.1 1.5 1 1 0 1 1 1 0 Serglycin | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:289411-289800 Augustus predicted protein sequence Tobacco scaffold443_contigs=11~289411-289800 DUF1347 PF07079.6 g99165.t1 - 0.093 10.9 0 0.098 10.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2171_contigs=2, transcript_loc=scaffold2171_contigs=2:27325-27651 Augustus predicted protein sequence Tobacco scaffold2171_contigs=2~27325-27651 zf-BED PF02892.10 g44926.t1 - 0.017 14.8 0.5 0.039 13.7 0.3 1.6 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:23228-25619 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~23228-25619 Trehalase PF01204.13 g105092.t1 - 0.27 9.8 1.9 0.32 9.5 1.3 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:291386-291882 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~291386-291882 DUF4413 PF14372.1 g12526.t1 - 0.0054 16.6 0 0.012 15.6 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:88532-93469 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~88532-93469 F_bP_aldolase PF01116.15 g15249.t1 - 0.15 11.1 0.4 2 7.4 0 2 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:304841-305679 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~304841-305679 zf-CCHC PF00098.18 g94633.t1 - 0.0035 17.2 2 0.0075 16.1 1.4 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:209776-211618 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~209776-211618 NicO PF03824.11 g77636.t1 - 0.19 10.9 0.4 0.19 10.9 0.3 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:643-1050 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~643-1050 zf-CCHC PF00098.18 g39738.t1 - 0.00049 19.8 0.4 0.00096 18.9 0.2 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:142095-142686 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~142095-142686 zf-met PF12874.2 g120371.t1 - 0.00000048 29.7 0.7 0.0000019 27.8 0.5 2.1 1 0 0 1 1 1 1 Zinc-finger of C2H2 type | Ref_seq=scaffold2723_contigs=6, transcript_loc=scaffold2723_contigs=6:128205-129147 Augustus predicted protein sequence Tobacco scaffold2723_contigs=6~128205-129147 CTDII PF01556.13 g5155.t1 - 0.0053 16.6 0.1 0.0066 16.3 0.1 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:38440-38712 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~38440-38712 DUF3153 PF11353.3 g36773.t1 - 0.068 12.6 1.3 0.075 12.4 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) | Ref_seq=scaffold898_contigs=6, transcript_loc=scaffold898_contigs=6:104937-106046 Augustus predicted protein sequence Tobacco scaffold898_contigs=6~104937-106046 DUF936 PF06075.7 g106567.t1 - 0.11 11.4 0.6 0.15 10.9 0.1 1.5 2 0 0 2 2 2 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:89235-90602 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~89235-90602 Vitelline_membr PF10542.4 g11340.t1 - 0.07 12.7 0.8 0.14 11.8 0.5 1.5 1 0 0 1 1 1 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:1024-1242 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~1024-1242 AAA_4 PF04326.9 g87516.t1 - 0.14 12.3 2.2 0.21 11.7 1.3 1.4 1 1 0 1 1 1 0 Divergent AAA domain | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:329146-329487 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~329146-329487 NAD_synthase PF02540.12 g40575.t1 - 0.0048 15.8 0.3 0.0061 15.4 0.2 1.1 1 0 0 1 1 1 1 NAD synthase | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:37348-38427 Augustus predicted protein sequence Tobacco scaffold979_contigs=3~37348-38427 Tap-RNA_bind PF09162.5 g125764.t1 - 0.051 13.1 0 0.076 12.5 0 1.2 1 0 0 1 1 1 0 Tap, RNA-binding | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:90414-90879 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~90414-90879 DUF2383 PF09537.5 g64989.t1 - 0.0089 16.2 0.1 0.39 10.9 0 2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:159683-159910 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~159683-159910 CAP_N PF01213.14 g1121.t1 - 0.15 11.3 0 0.18 11 0 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:408549-408803 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~408549-408803 CITED PF04487.7 g122535.t1 - 0.027 14.6 0.1 0.029 14.6 0.1 1.1 1 0 0 1 1 1 0 CITED | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:195322-195600 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~195322-195600 DNA_ligase_aden PF01653.13 g44150.t1 - 0.071 12 0.1 0.081 11.8 0.1 1 1 0 0 1 1 1 0 NAD-dependent DNA ligase adenylation domain | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:92747-93147 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~92747-93147 DinI PF06183.8 g127371.t1 - 0.018 15 0 0.026 14.5 0 1.3 1 0 0 1 1 1 0 DinI-like family | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:25186-25479 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~25186-25479 zf-BED PF02892.10 g100841.t1 - 0.0059 16.3 1.5 0.011 15.5 1 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:169652-169975 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~169652-169975 Adeno_E1B_55K PF01696.12 g6735.t1 - 0.8 8.1 3.8 1.1 7.6 2.6 1.1 1 0 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:73874-75734 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~73874-75734 DUF722 PF05263.6 g118160.t1 - 0.0014 18.7 0.4 1.1 9.4 0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF722) | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:374539-378240 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~374539-378240 DUF1347 PF07079.6 g87351.t1 - 0.037 12.2 0.1 0.062 11.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:427749-428864 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~427749-428864 FlxA PF14282.1 g25972.t1 - 0.037 13.9 0.7 0.037 13.9 0.5 2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:190888-192945 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~190888-192945 Cytochrome_C7 PF14522.1 g114739.t1 - 0.068 12.8 0.1 0.12 12 0.1 1.4 1 0 0 1 1 1 0 Cytochrome c7 | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:1360-1779 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~1360-1779 Humanin PF15040.1 g68580.t1 - 0.11 11.6 0.5 0.19 11 0.3 1.4 1 0 0 1 1 1 0 Humanin family | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:523560-523802 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~523560-523802 Med2 PF11214.3 g81896.t1 - 0.065 13.2 0.8 0.13 12.3 0.3 1.6 1 1 1 2 2 2 0 Mediator complex subunit 2 | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:15166-15429 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~15166-15429 DUF1347 PF07079.6 g78682.t1 - 0.066 11.4 0.1 0.083 11 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:78936-79397 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~78936-79397 MAPKK1_Int PF08923.5 g116888.t1 - 0.1 12.2 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:32273-33518 Augustus predicted protein sequence Tobacco scaffold2678_contigs=5~32273-33518 Ribosomal_L15e PF00827.12 g100144.t1 - 0.0094 15.4 0.4 0.01 15.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:159967-160356 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~159967-160356 zf-CCHC PF00098.18 g100110.t1 - 0.0036 17.1 0.1 0.0058 16.5 0.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:68256-68534 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~68256-68534 Prp31_C PF09785.4 g23466.t1 - 0.024 15 0.1 0.03 14.7 0 1.1 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:113242-113601 Augustus predicted protein sequence Tobacco scaffold645_contigs=7~113242-113601 LAP1C PF05609.7 g61404.t1 - 0.076 11.6 0.1 0.085 11.5 0 1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:5990-6292 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~5990-6292 ATHILA PF03078.10 g29949.t1 - 0.000048 22.1 0 0.000054 21.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:92455-92721 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~92455-92721 PP2 PF14299.1 g126154.t1 - 0.061 12.7 0.5 0.13 11.6 0 1.7 2 0 0 2 2 2 0 Phloem protein 2 | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:81167-82045 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~81167-82045 DUF3321 PF11968.3 g115404.t1 - 0.13 11.8 0 0.22 11.1 0 1.4 1 1 0 1 1 1 0 Putative methyltransferase (DUF3321) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:265156-266394 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~265156-266394 CENP-H PF05837.7 g51176.t1 - 0.12 12.5 4.4 0.16 12.1 3 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:109010-110615 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~109010-110615 Cep57_MT_bd PF06657.8 g60073.t1 - 0.032 14.1 0.5 0.043 13.7 0.2 1.3 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:227988-228197 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~227988-228197 DUF2247 PF10004.4 g98512.t1 - 0.015 14.9 0 0.026 14.2 0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2247) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:21626-23655 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~21626-23655 Prothymosin PF03247.9 g30345.t1 - 0.058 13.5 4.3 0.072 13.2 3 1.2 1 0 0 1 1 1 0 Prothymosin/parathymosin family | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:366828-367109 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~366828-367109 PMD PF10536.4 g65756.t1 - 4.9E-009 35.6 0.2 5.7E-009 35.4 0.1 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1428_contigs=7, transcript_loc=scaffold1428_contigs=7:4036-4887 Augustus predicted protein sequence Tobacco scaffold1428_contigs=7~4036-4887 zf-CCHC_3 PF13917.1 g80862.t1 - 0.0033 17.1 0.4 0.0098 15.6 0.3 1.9 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:187989-188501 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~187989-188501 HNH PF01844.18 g86374.t1 - 0.053 13.3 1 3.7 7.5 0.1 2.3 2 0 0 2 2 2 0 HNH endonuclease | Ref_seq=scaffold1847_contigs=8, transcript_loc=scaffold1847_contigs=8:24314-26021 Augustus predicted protein sequence Tobacco scaffold1847_contigs=8~24314-26021 DUF4219 PF13961.1 g19941.t1 - 0.000046 22.7 0.3 0.000066 22.2 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:82856-83098 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~82856-83098 PNRC PF15365.1 g97172.t1 - 0.15 12 6 0.11 12.4 2.8 1.8 2 0 0 2 2 2 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:192729-193549 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~192729-193549 DBD_Tnp_Mut PF03108.10 g88182.t1 - 0.00033 20.1 0.4 0.00077 18.9 0.1 1.8 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:322375-322722 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~322375-322722 AMPKBI PF04739.10 g47120.t1 - 0.071 12.9 0 0.093 12.5 0 1.2 1 0 0 1 1 1 0 5'-AMP-activated protein kinase beta subunit, interation domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:58151-58739 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~58151-58739 Retrotrans_gag PF03732.12 g112315.t1 - 0.039 14 0 0.1 12.6 0 1.7 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:69146-70105 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~69146-70105 ThiF PF00899.16 g24336.t1 - 0.13 12.1 0 0.14 11.9 0 1 1 0 0 1 1 1 0 ThiF family | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:103219-106671 Augustus predicted protein sequence Tobacco scaffold670_contigs=7~103219-106671 UBN2 PF14223.1 g89284.t1 - 0.33 10.7 2.2 2.1 8.1 0.2 2 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:223228-223508 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~223228-223508 DUF4140 PF13600.1 g67906.t1 - 0.026 14.9 0.6 0.034 14.5 0.4 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold1460_contigs=7, transcript_loc=scaffold1460_contigs=7:108066-108353 Augustus predicted protein sequence Tobacco scaffold1460_contigs=7~108066-108353 NYD-SP28_assoc PF14775.1 g41296.t1 - 0.57 9.9 2.8 0.7 9.6 1.4 1.5 2 0 0 2 2 2 0 Sperm tail C-terminal domain | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:69009-69467 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~69009-69467 DUF3374 PF11854.3 g81966.t1 - 0.05 11.8 0 0.05 11.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3374) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:271282-271737 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~271282-271737 KdgT PF03812.8 g53840.t1 - 0.00057 19.1 0 0.0007 18.8 0 1 1 0 0 1 1 1 1 2-keto-3-deoxygluconate permease | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:41932-42650 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~41932-42650 zf-CCHC PF00098.18 g72061.t1 - 0.005 16.7 1.9 0.005 16.7 1.3 2 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:201004-201331 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~201004-201331 ATHILA PF03078.10 g80403.t1 - 0.0015 17.2 0 0.0015 17.2 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:197971-198216 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~197971-198216 FH2 PF02181.18 g5800.t1 - 0.014 14.2 0.1 0.017 14 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:536-913 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~536-913 HeLo PF14479.1 g36808.t1 - 0.0067 16.2 0.9 2.9 7.5 0.1 2.5 1 1 2 3 3 3 2 Prion-inhibition and propagation | Ref_seq=scaffold900_contigs=1, transcript_loc=scaffold900_contigs=1:34086-34616 Augustus predicted protein sequence Tobacco scaffold900_contigs=1~34086-34616 Mg-por_mtran_C PF07109.6 g15778.t1 - 0.027 14.5 0.4 0.083 12.9 0.1 1.8 2 0 0 2 2 2 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:282887-283288 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~282887-283288 Sec3-PIP2_bind PF15277.1 g14913.t1 - 0.0021 17.8 0 0.0027 17.5 0 1.2 1 0 0 1 1 1 1 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold484_contigs=2, transcript_loc=scaffold484_contigs=2:19422-20048 Augustus predicted protein sequence Tobacco scaffold484_contigs=2~19422-20048 FH2 PF02181.18 g90230.t1 - 0.051 12.4 0.3 0.063 12.1 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:411160-411615 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~411160-411615 zf-Sec23_Sec24 PF04810.10 g55038.t1 - 0.032 13.7 0 0.048 13.2 0 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:434250-434634 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~434250-434634 DUF3753 PF12575.3 g60604.t1 - 0.21 11.3 2 4.3 7.2 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:48732-49728 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~48732-49728 DUF4172 PF13776.1 g47592.t1 - 0.024 14.7 0.9 0.047 13.7 0.1 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:284614-285102 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~284614-285102 RES PF08808.6 g28004.t1 - 0.12 12.4 0.2 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 RES domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:736948-737484 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~736948-737484 DUF3966 PF13110.1 g83881.t1 - 0.15 11.8 0.8 0.28 11 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3966) | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:118479-119365 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~118479-119365 SAP25 PF15476.1 g21504.t1 - 0.017 14.6 1.1 0.019 14.5 0.7 1.1 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP25 | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:13213-13840 Augustus predicted protein sequence Tobacco scaffold595_contigs=2~13213-13840 Cut8_N PF14482.1 g37806.t1 - 0.071 13.1 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:49340-50011 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~49340-50011 DNA_alkylation PF08713.6 g129467.t1 - 0.091 12.2 0.1 0.1 12.1 0 1.1 1 0 0 1 1 1 0 DNA alkylation repair enzyme | Ref_seq=scaffold2960_contigs=1, transcript_loc=scaffold2960_contigs=1:499-786 Augustus predicted protein sequence Tobacco scaffold2960_contigs=1~499-786 Rotamase_2 PF13145.1 g36442.t1 - 0.019 15.6 0.2 0.027 15.1 0.1 1.2 1 0 0 1 1 1 0 PPIC-type PPIASE domain | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:85330-86029 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~85330-86029 ATHILA PF03078.10 g33793.t1 - 0.0049 15.5 0.1 0.0058 15.2 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:557799-558167 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~557799-558167 DUF1143 PF06608.6 g972.t1 - 0.00031 20.7 0 0.35 10.8 0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1143) | Ref_seq=scaffold88_contigs=5, transcript_loc=scaffold88_contigs=5:11958-12751 Augustus predicted protein sequence Tobacco scaffold88_contigs=5~11958-12751 DUF716 PF04819.7 g14040.t1 - 0.0068 15.8 1.5 4.5 6.6 0 2.9 1 1 2 3 3 3 3 Family of unknown function (DUF716) | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:61193-62373 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~61193-62373 zf-CCHC PF00098.18 g52769.t1 - 0.0068 16.2 0.8 0.016 15.1 0.5 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1003158-1004274 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1003158-1004274 DUF464 PF04327.7 g96906.t1 - 0.1 12.8 0.3 0.57 10.4 0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF464) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:80509-80943 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~80509-80943 CCDC71L PF15374.1 g50838.t1 - 0.044 13.1 0 0.091 12 0 1.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 71L | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:276225-276509 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~276225-276509 FUSC PF04632.7 g70304.t1 - 0.45 8.8 4.1 0.48 8.7 2.8 1 1 0 0 1 1 1 0 Fusaric acid resistance protein family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:262516-262809 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~262516-262809 Apolipoprotein PF01442.13 g55990.t1 - 0.0018 17.8 8.4 0.0018 17.8 5.8 2.3 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:308688-309981 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~308688-309981 DUF1682 PF07946.9 g69819.t1 - 0.0041 16 7 0.0041 16 4.8 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:248004-248297 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~248004-248297 RFPL3_antisense PF10489.4 g2514.t1 - 0.1 12.4 0.2 0.46 10.2 0 1.8 1 1 0 2 2 2 0 Ret finger protein-like 3 antisense | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:157292-158223 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~157292-158223 DUF3987 PF13148.1 g35689.t1 - 1.4 7.3 5.1 1.4 7.3 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:127788-128985 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~127788-128985 IncA PF04156.9 g4453.t1 - 0.0041 16.7 8.8 0.0091 15.6 6.4 1.3 1 1 0 1 1 1 1 IncA protein | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:246001-246888 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~246001-246888 DUF910 PF06014.6 g51160.t1 - 0.12 12.3 0.2 0.18 11.7 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF910) | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:89910-90272 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~89910-90272 Ribonucleas_3_3 PF14622.1 g46196.t1 - 0.14 12.1 0 0.14 12.1 0 1.1 1 0 0 1 1 1 0 Ribonuclease-III-like | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:42939-43911 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~42939-43911 IFP_35_N PF07334.8 g43888.t1 - 0.06 13.3 0.4 0.11 12.4 0.3 1.5 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:254981-255268 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~254981-255268 Pox_G7 PF05503.7 g2937.t1 - 0.058 12 0.1 0.07 11.7 0.1 1 1 0 0 1 1 1 0 Poxvirus G7-like | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:86382-86651 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~86382-86651 DUF743 PF05332.6 g42717.t1 - 0.12 12.3 0.3 0.78 9.7 0.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF743) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:406108-408542 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~406108-408542 DUF496 PF04363.7 g25855.t1 - 0.1 12.4 0.1 0.19 11.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF496) | Ref_seq=scaffold706_contigs=4, transcript_loc=scaffold706_contigs=4:26769-27813 Augustus predicted protein sequence Tobacco scaffold706_contigs=4~26769-27813 DUF4283 PF14111.1 g64340.t1 - 0.00000044 29.1 0.1 0.00000053 28.8 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:49355-49708 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~49355-49708 vWF_A PF12450.3 g6217.t1 - 1.8 8.3 5 0.26 11 1 1.5 2 0 0 2 2 2 0 von Willebrand factor | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:274889-275371 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~274889-275371 Img2 PF05046.9 g43168.t1 - 0.14 12.4 0.1 2.3 8.5 0.1 2 2 0 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:29714-29998 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~29714-29998 DUF3893 PF13032.1 g20305.t1 - 0.1 12.7 0 0.19 11.8 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:3533-4282 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~3533-4282 Med29 PF11568.3 g55176.t1 - 0.024 14.6 0.5 0.033 14.2 0.3 1.1 1 0 0 1 1 1 0 Mediator complex subunit 29 | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:69841-70287 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~69841-70287 Desmo_N PF06771.6 g98401.t1 - 0.0065 16.3 0.2 0.013 15.3 0 1.6 2 0 0 2 2 2 1 Viral Desmoplakin N-terminus | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:70902-71378 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~70902-71378 Ecl1 PF12855.2 g8075.t1 - 0.3 10.4 3.3 0.15 11.4 0.8 1.6 2 0 0 2 2 2 0 Life-span regulatory factor | Ref_seq=scaffold328_contigs=4, transcript_loc=scaffold328_contigs=4:59207-59461 Augustus predicted protein sequence Tobacco scaffold328_contigs=4~59207-59461 Toprim_Crpt PF13342.1 g77571.t1 - 0.036 13.7 0.2 0.13 11.8 0.1 1.9 2 0 0 2 2 2 0 C-terminal repeat of topoisomerase | Ref_seq=scaffold1632_contigs=6, transcript_loc=scaffold1632_contigs=6:47153-47440 Augustus predicted protein sequence Tobacco scaffold1632_contigs=6~47153-47440 DUF725 PF05267.7 g84069.t1 - 0.057 13.3 0.1 16 5.4 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF725) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:565986-567952 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~565986-567952 DUF4283 PF14111.1 g34027.t1 - 0.00000091 28 0 0.0000014 27.4 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:87906-88781 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~87906-88781 Potassium_chann PF11404.3 g99081.t1 - 0.0025 17.5 1.9 1.9 8.3 0 2.6 3 0 0 3 3 3 2 Potassium voltage-gated channel | Ref_seq=scaffold2169_contigs=12, transcript_loc=scaffold2169_contigs=12:63410-63930 Augustus predicted protein sequence Tobacco scaffold2169_contigs=12~63410-63930 Rubis-subs-bind PF09273.6 g43200.t1 - 0.021 14.7 0.3 0.024 14.5 0.2 1.3 1 1 0 1 1 1 0 Rubisco LSMT substrate-binding | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:90553-90786 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~90553-90786 ATHILA PF03078.10 g70288.t1 - 0.00000046 28.8 0 0.00000053 28.5 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:227320-227535 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~227320-227535 DUF3188 PF11384.3 g72095.t1 - 0.0037 16.7 0.9 0.0037 16.7 0.7 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3188) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:261203-263000 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~261203-263000 RVP_2 PF08284.6 g72386.t1 - 0.00000004 33.2 0 0.000000064 32.6 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:963140-963701 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~963140-963701 UBN2_2 PF14227.1 g35303.t1 - 0.0023 17.4 0 0.37 10.3 0 2.1 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:10575-11287 Augustus predicted protein sequence Tobacco scaffold866_contigs=9~10575-11287 MCD PF05292.6 g82646.t1 - 0.14 10.8 0 0.26 9.9 0 1.5 1 1 1 2 2 2 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:79833-80132 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~79833-80132 DUF2151 PF10221.4 g74513.t1 - 0.82 7.7 8.5 1 7.4 5.9 1 1 0 0 1 1 1 0 Cell cycle and development regulator | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:31280-32015 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~31280-32015 DUF22 PF01629.11 g123372.t1 - 0.1 12 0.3 0.19 11.2 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF22 | Ref_seq=scaffold2757_contigs=5, transcript_loc=scaffold2757_contigs=5:108878-109495 Augustus predicted protein sequence Tobacco scaffold2757_contigs=5~108878-109495 DUF4608 PF15381.1 g128858.t1 - 6.7 6.9 9.9 10 6.3 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2894_contigs=1, transcript_loc=scaffold2894_contigs=1:33931-34209 Augustus predicted protein sequence Tobacco scaffold2894_contigs=1~33931-34209 DUF2270 PF10028.4 g127623.t1 - 0.048 13.1 0 0.065 12.7 0 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2270) | Ref_seq=scaffold2831_contigs=1, transcript_loc=scaffold2831_contigs=1:45046-46326 Augustus predicted protein sequence Tobacco scaffold2831_contigs=1~45046-46326 zf-CCHC PF00098.18 g110643.t1 - 0.053 13.4 0.1 0.083 12.8 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:157045-157419 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~157045-157419 DUF3678 PF12435.3 g46438.t1 - 0.17 11.4 8.2 3 7.4 0.8 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3678) | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:406588-407452 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~406588-407452 HTH_23 PF13384.1 g117238.t1 - 0.053 13.1 0.4 6.7 6.5 0.2 2.7 1 1 1 2 2 2 0 Homeodomain-like domain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:200775-201518 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~200775-201518 Pox_polyA_pol_C PF12629.2 g87087.t1 - 0.02 14.6 0 0.021 14.5 0 1.1 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase C-terminal domain | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:105823-106110 Augustus predicted protein sequence Tobacco scaffold1866_contigs=5~105823-106110 ACT_5 PF13710.1 g44055.t1 - 0.093 12.5 0 0.12 12.1 0 1.1 1 0 0 1 1 1 0 ACT domain | Ref_seq=scaffold1032_contigs=3, transcript_loc=scaffold1032_contigs=3:64072-64272 Augustus predicted protein sequence Tobacco scaffold1032_contigs=3~64072-64272 DMAP_binding PF06464.6 g53322.t1 - 0.012 16.1 0.2 0.027 15 0 1.6 2 0 0 2 2 2 0 DMAP1-binding Domain | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:86282-87350 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~86282-87350 LEA_1 PF03760.10 g89367.t1 - 0.075 13.1 2.9 0.8 9.9 0.8 2.2 2 0 0 2 2 2 0 Late embryogenesis abundant (LEA) group 1 | Ref_seq=scaffold1944_contigs=2, transcript_loc=scaffold1944_contigs=2:9968-10336 Augustus predicted protein sequence Tobacco scaffold1944_contigs=2~9968-10336 SGT1 PF07093.6 g86116.t1 - 0.52 8.6 7.8 0.59 8.4 5.4 1.1 1 0 0 1 1 1 0 SGT1 protein | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:218387-218812 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~218387-218812 RXT2_N PF08595.6 g84953.t1 - 0.18 11.6 11.6 0.33 10.7 8.1 1.5 1 1 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:247625-247894 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~247625-247894 DEC-1_N PF04625.8 g129679.t1 - 1.3 7.6 4.5 1.3 7.5 3.1 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold3015_contigs=1, transcript_loc=scaffold3015_contigs=1:6048-6431 Augustus predicted protein sequence Tobacco scaffold3015_contigs=1~6048-6431 Siah-Interact_N PF09032.6 g78879.t1 - 0.054 13.5 0 0.082 12.9 0 1.3 1 0 0 1 1 1 0 Siah interacting protein, N terminal | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:177545-177901 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~177545-177901 RVT_3 PF13456.1 g5285.t1 - 0.0081 15.9 0 0.013 15.3 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold276_contigs=2, transcript_loc=scaffold276_contigs=2:17790-18113 Augustus predicted protein sequence Tobacco scaffold276_contigs=2~17790-18113 HR1 PF02185.11 g122440.t1 - 0.045 13.4 0 0.09 12.5 0 1.5 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:17832-18646 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~17832-18646 HTH_OrfB_IS605 PF12323.3 g94026.t1 - 0.00098 18.3 0.1 0.0063 15.8 0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:427964-428451 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~427964-428451 Herpes_UL25 PF01499.11 g92568.t1 - 3.2 5.9 7.3 3.5 5.8 5.1 1 1 0 0 1 1 1 0 Herpesvirus UL25 family | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:17218-17508 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~17218-17508 DUF613 PF04764.7 g80182.t1 - 0.11 12.4 0.4 0.14 12 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF613) | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:193447-194445 Augustus predicted protein sequence Tobacco scaffold1710_contigs=11~193447-194445 DUF640 PF04852.7 g95735.t1 - 0.07 13.3 0.1 0.81 9.8 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF640) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:201059-201505 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~201059-201505 DUF2428 PF10350.4 g109421.t1 - 0.11 11.4 0 0.13 11.2 0 1 1 0 0 1 1 1 0 Putative death-receptor fusion protein (DUF2428) | Ref_seq=scaffold2508_contigs=3, transcript_loc=scaffold2508_contigs=3:20662-20985 Augustus predicted protein sequence Tobacco scaffold2508_contigs=3~20662-20985 HSA PF07529.8 g92685.t1 - 0.21 11.3 2.7 0.51 10.1 0 2.4 2 1 0 2 2 2 0 HSA | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:292666-292944 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~292666-292944 DUF282 PF03380.9 g112713.t1 - 0.055 13.2 0 0.097 12.4 0 1.4 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF282 | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:211745-212205 Augustus predicted protein sequence Tobacco scaffold2615_contigs=8~211745-212205 Ribosomal_L17 PF01196.14 g8911.t1 - 0.074 13.6 0.1 0.17 12.5 0.1 1.6 1 1 0 1 1 1 0 Ribosomal protein L17 | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:48125-48403 Augustus predicted protein sequence Tobacco scaffold346_contigs=1~48125-48403 DUF2264 PF10022.4 g63227.t1 - 0.016 13.9 0.5 0.021 13.4 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:121027-121710 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~121027-121710 YdjO PF14169.1 g115406.t1 - 0.017 14.5 0 0.024 14 0 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:266772-267092 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~266772-267092 TOBE PF03459.12 g55803.t1 - 0.093 12.8 2.1 11 6.2 0 3.7 2 1 2 5 5 5 0 TOBE domain | Ref_seq=scaffold1227_contigs=6, transcript_loc=scaffold1227_contigs=6:19469-19965 Augustus predicted protein sequence Tobacco scaffold1227_contigs=6~19469-19965 PLRV_ORF5 PF01690.12 g23134.t1 - 0.14 11.2 2.4 0.16 11 1.6 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:234375-234816 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~234375-234816 BacteriocIIc_cy PF12173.3 g29727.t1 - 0.012 15.6 0.1 0.014 15.3 0 1.3 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like | Ref_seq=scaffold766_contigs=4, transcript_loc=scaffold766_contigs=4:1949-2343 Augustus predicted protein sequence Tobacco scaffold766_contigs=4~1949-2343 Rubis-subs-bind PF09273.6 g68399.t1 - 0.018 14.9 0.3 0.046 13.6 0.2 1.6 1 0 0 1 1 1 0 Rubisco LSMT substrate-binding | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:33148-34953 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~33148-34953 BChl_A PF02327.12 g118294.t1 - 0.00091 17.9 0.4 0.0012 17.5 0.3 1.1 1 0 0 1 1 1 1 Bacteriochlorophyll A protein | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:323641-324048 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~323641-324048 FrhB_FdhB_C PF04432.8 g61392.t1 - 0.12 11.8 0 0.12 11.7 0 1 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:155298-157339 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~155298-157339 Jun PF03957.8 g98390.t1 - 0.15 11.7 7.8 0.22 11.2 5.4 1.2 1 0 0 1 1 1 0 Jun-like transcription factor | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:55473-56182 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~55473-56182 Retrotrans_gag PF03732.12 g123204.t1 - 0.00027 20.9 0 0.00036 20.5 0 1.3 1 1 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:76603-76827 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~76603-76827 DUF1641 PF07849.6 g48845.t1 - 0.058 13 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1641) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:484181-484635 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~484181-484635 Diphtheria_C PF02763.9 g36576.t1 - 0.04 13.3 0 0.047 13.1 0 1.1 1 0 0 1 1 1 0 Diphtheria toxin, C domain | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:32341-33081 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~32341-33081 ThylakoidFormat PF11264.3 g121037.t1 - 0.061 12.9 0 0.063 12.8 0 1.2 1 0 0 1 1 1 0 Thylakoid formation protein | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:266712-267062 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~266712-267062 Tiny_TM_bacill PF09680.5 g99098.t1 - 5.6 6.4 11.8 4.2 6.8 1.1 3.7 3 0 0 3 3 3 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:1-3081 Augustus predicted protein sequence Tobacco scaffold2170_contigs=8~1-3081 DUF4201 PF13870.1 g31963.t1 - 0.0011 18.4 7.6 0.014 14.8 1.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:55935-56576 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~55935-56576 YihI PF04220.7 g59032.t1 - 0.000086 21.9 0.1 0.4 9.9 0 3.2 3 0 0 3 3 3 3 Der GTPase activator (YihI) | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:78263-80297 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~78263-80297 PAN_2 PF08276.6 g46638.t1 - 0.048 13.5 0.8 9 6.2 0.1 2.3 2 0 0 2 2 2 0 PAN-like domain | Ref_seq=scaffold1072_contigs=9, transcript_loc=scaffold1072_contigs=9:168561-169409 Augustus predicted protein sequence Tobacco scaffold1072_contigs=9~168561-169409 Sigma70_ner PF04546.8 g93277.t1 - 0.0056 16.3 1.1 0.0076 15.8 0.7 1.2 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:143033-144073 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~143033-144073 Ribosomal_L50 PF10501.4 g128403.t1 - 0.056 13.4 2.6 0.1 12.5 0.3 2.2 1 1 0 2 2 2 0 Ribosomal subunit 39S | Ref_seq=scaffold2866_contigs=1, transcript_loc=scaffold2866_contigs=1:41403-42284 Augustus predicted protein sequence Tobacco scaffold2866_contigs=1~41403-42284 DegS PF05384.6 g83635.t1 - 0.0059 15.8 4.5 0.0069 15.6 3.1 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:48091-48522 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~48091-48522 DUF4201 PF13870.1 g28464.t1 - 0.007 15.8 0.8 0.011 15.1 0.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:156886-157386 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~156886-157386 Peptidase_C48 PF02902.14 g127020.t1 - 0.000046 23.1 0.7 0.000058 22.8 0.5 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2811_contigs=1, transcript_loc=scaffold2811_contigs=1:60240-60659 Augustus predicted protein sequence Tobacco scaffold2811_contigs=1~60240-60659 DUF4407 PF14362.1 g76190.t1 - 3.7 6.4 5.9 3.7 6.4 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:220036-220341 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~220036-220341 DUF4144 PF13642.1 g101905.t1 - 0.019 15.2 1.4 0.034 14.4 1 1.5 1 0 0 1 1 1 0 protein structure with unknown function | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:41675-42384 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~41675-42384 TgMIC1 PF11476.3 g129713.t1 - 0.044 13.3 12.4 13 5.2 0 7.7 11 0 0 11 11 11 0 Toxoplasma gondii micronemal protein 1 TgMIC1 | Ref_seq=scaffold3032_contigs=1, transcript_loc=scaffold3032_contigs=1:1520-5513 Augustus predicted protein sequence Tobacco scaffold3032_contigs=1~1520-5513 DUF4429 PF14472.1 g77432.t1 - 0.061 13.6 0.1 0.077 13.2 0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4429) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:63167-64584 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~63167-64584 MHCassoc_trimer PF08831.5 g64152.t1 - 0.044 13.6 1.5 0.079 12.8 1 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:19793-20377 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~19793-20377 Cupredoxin_1 PF13473.1 g20650.t1 - 0.039 13.8 0.2 0.054 13.3 0.1 1.2 1 0 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:622232-623141 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~622232-623141 HMG_box_5 PF14887.1 g123138.t1 - 4.2 7.2 6.6 4 7.2 0.6 2.5 2 0 0 2 2 2 0 HMG (high mobility group) box 5 | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:59339-60459 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~59339-60459 DBD_Tnp_Mut PF03108.10 g53745.t1 - 0.000084 22 0.2 0.00016 21.1 0.1 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:8742-10731 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~8742-10731 TP_methylase PF00590.15 g113718.t1 - 0.14 11.8 0 0.18 11.4 0 1.2 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:275704-276588 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~275704-276588 HPD PF05044.7 g93674.t1 - 0.016 14.9 0 0.018 14.7 0 1.1 1 0 0 1 1 1 0 Homeo-prospero domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:305093-305374 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~305093-305374 HR1 PF02185.11 g50104.t1 - 0.027 14.1 0.3 0.037 13.7 0.2 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:290428-290658 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~290428-290658 RVT_3 PF13456.1 g100755.t1 - 1.2E-011 44.2 0 1.4E-011 44 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:128071-128364 Augustus predicted protein sequence Tobacco scaffold2204_contigs=7~128071-128364 DUF1517 PF07466.6 g108769.t1 - 0.16 10.9 0 0.18 10.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:179913-180462 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~179913-180462 zf-BED PF02892.10 g129941.t1 - 0.0014 18.3 0.7 0.0036 17 0.5 1.8 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold3237_contigs=1, transcript_loc=scaffold3237_contigs=1:1-933 Augustus predicted protein sequence Tobacco scaffold3237_contigs=1~1-933 DUF1158 PF06643.6 g54939.t1 - 0.1 12.9 0 0.14 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1158) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:183358-184703 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~183358-184703 YhfZ_C PF14503.1 g72632.t1 - 0.15 11.3 0.8 0.48 9.7 0.1 1.8 1 1 1 2 2 2 0 YhfZ C-terminal domain | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:267881-268114 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~267881-268114 DUF2826 PF11442.3 g116246.t1 - 0.12 12 0.1 6.2 6.4 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2826) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:268218-268701 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~268218-268701 Retrotrans_gag PF03732.12 g28537.t1 - 0.041 13.9 0.1 0.055 13.5 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:156295-156645 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~156295-156645 Nop14 PF04147.7 g23179.t1 - 0.0048 14.8 6.2 0.0043 15 4.3 1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:5423-6387 Augustus predicted protein sequence Tobacco scaffold639_contigs=2~5423-6387 SAGA-Tad1 PF12767.2 g108980.t1 - 0.38 10.3 5.7 0.47 10 4 1.3 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:60628-62116 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~60628-62116 bZIP_1 PF00170.16 g46432.t1 - 0.59 10.1 3.3 5.8 6.9 0.4 2.4 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:396360-397198 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~396360-397198 Leptin PF02024.10 g3498.t1 - 0.027 14.1 0.3 0.042 13.4 0.2 1.3 1 0 0 1 1 1 0 Leptin | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:11351-11923 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~11351-11923 S100PBPR PF15427.1 g51326.t1 - 0.0023 17.1 0 0.0025 16.9 0 1 1 0 0 1 1 1 1 S100P-binding protein | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:43614-44362 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~43614-44362 EcoR124_C PF12008.3 g3730.t1 - 0.0016 17.7 0.6 0.0018 17.5 0.4 1 1 0 0 1 1 1 1 Type I restriction and modification enzyme - subunit R C terminal | Ref_seq=scaffold239_contigs=3, transcript_loc=scaffold239_contigs=3:67680-67892 Augustus predicted protein sequence Tobacco scaffold239_contigs=3~67680-67892 Sortase PF04203.8 g51236.t1 - 0.078 12.5 0.1 0.091 12.3 0.1 1.1 1 0 0 1 1 1 0 Sortase family | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:185823-186596 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~185823-186596 TMF_DNA_bd PF12329.3 g62404.t1 - 0.025 14.3 1.3 0.041 13.6 0.9 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:143561-145593 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~143561-145593 Leucyl-specific PF14795.1 g35097.t1 - 0.13 12.1 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:33749-34405 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~33749-34405 VGCC_beta4Aa_N PF12052.3 g123928.t1 - 0.0043 16.8 0.5 0.006 16.4 0.3 1.2 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:912466-913051 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~912466-913051 FlxA PF14282.1 g41115.t1 - 0.0058 16.5 5.2 0.0082 16 3.6 1.2 1 0 0 1 1 1 1 FlxA-like protein | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:697639-697890 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~697639-697890 DUF1359 PF07097.6 g45600.t1 - 0.049 13.6 0 0.094 12.7 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1359) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:205283-206050 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~205283-206050 U3_snoRNA_assoc PF08297.6 g110646.t1 - 1.5 9.1 5 2.3 8.5 3.4 1.4 1 1 0 1 1 1 0 U3 snoRNA associated | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:161766-161984 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~161766-161984 RseC_MucC PF04246.7 g48085.t1 - 0.019 14.5 0 0.023 14.2 0 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:182308-182598 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~182308-182598 CytadhesinP1 PF12378.3 g15247.t1 - 0.062 13.2 0.6 2.4 8.1 0 2.2 2 0 0 2 2 2 0 Trypsin-sensitive surface-exposed protein | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:300574-301103 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~300574-301103 DUF972 PF06156.8 g21016.t1 - 0.017 15.4 2.4 0.71 10.2 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:270729-271711 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~270729-271711 Yip1 PF04893.12 g63694.t1 - 0.014 14.9 0.8 0.015 14.7 0.6 1.1 1 0 0 1 1 1 0 Yip1 domain | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:88218-89502 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~88218-89502 DUF2894 PF11445.3 g63297.t1 - 0.018 15.2 0.5 0.02 15.1 0.3 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:166542-166811 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~166542-166811 DUF3053 PF11254.3 g34043.t1 - 0.075 12.2 3.4 0.083 12.1 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3053) | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:156718-156942 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~156718-156942 DUF2815 PF10991.3 g114358.t1 - 0.0096 15.4 0 2.3 7.7 0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF2815) | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:153822-156224 Augustus predicted protein sequence Tobacco scaffold2646_contigs=41~153822-156224 CIDE-N PF02017.10 g125533.t1 - 0.062 13 0.1 0.077 12.7 0.1 1.2 1 0 0 1 1 1 0 CIDE-N domain | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:2198-2788 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~2198-2788 Semenogelin PF05474.6 g39413.t1 - 0.13 10.5 0 0.14 10.3 0 1 1 0 0 1 1 1 0 Semenogelin | Ref_seq=scaffold955_contigs=6, transcript_loc=scaffold955_contigs=6:82713-84415 Augustus predicted protein sequence Tobacco scaffold955_contigs=6~82713-84415 Retrotrans_gag PF03732.12 g103121.t1 - 0.0013 18.7 0.2 0.002 18.1 0.1 1.5 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2301_contigs=7, transcript_loc=scaffold2301_contigs=7:12823-13885 Augustus predicted protein sequence Tobacco scaffold2301_contigs=7~12823-13885 Gemini_AL3 PF01407.12 g52428.t1 - 0.019 14.4 0.2 0.021 14.3 0.1 1.1 1 0 0 1 1 1 0 Geminivirus AL3 protein | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:249980-250261 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~249980-250261 DUF4301 PF14134.1 g84938.t1 - 0.12 10.8 0 0.15 10.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4301) | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:181457-183250 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~181457-183250 DUF641 PF04859.7 g53268.t1 - 0.0001 22 2.3 0.00014 21.6 1.6 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:144793-145254 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~144793-145254 Laminin_G_3 PF13385.1 g78805.t1 - 0.057 13.6 0.1 0.061 13.5 0 1.2 1 0 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:193918-194199 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~193918-194199 Myc_N PF01056.13 g121093.t1 - 0.26 10.3 12.8 0.32 10.1 8.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:343005-343406 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~343005-343406 DUF3840 PF12944.2 g18404.t1 - 0.19 11.6 2 2.1 8.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3840) | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:28737-30333 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~28737-30333 DUF1774 PF08611.5 g103282.t1 - 0.019 15.1 0.1 0.058 13.5 0.1 1.9 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1774) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:271613-272925 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~271613-272925 Vfa1 PF08432.5 g57411.t1 - 0.15 12 10 0.2 11.6 7 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:116099-116656 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~116099-116656 FSH1 PF03959.8 g73094.t1 - 0.019 14.3 0 0.025 14 0 1.1 1 0 0 1 1 1 0 Serine hydrolase (FSH1) | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:31597-31959 Augustus predicted protein sequence Tobacco scaffold1529_contigs=6~31597-31959 zf-CCHC PF00098.18 g126401.t1 - 0.018 14.9 0.2 0.032 14.1 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2794_contigs=1, transcript_loc=scaffold2794_contigs=1:29279-30236 Augustus predicted protein sequence Tobacco scaffold2794_contigs=1~29279-30236 DegT_DnrJ_EryC1 PF01041.12 g36858.t1 - 0.098 11.6 0.1 0.18 10.7 0 1.4 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family | Ref_seq=scaffold902_contigs=1, transcript_loc=scaffold902_contigs=1:29244-30596 Augustus predicted protein sequence Tobacco scaffold902_contigs=1~29244-30596 Imm35 PF15581.1 g42738.t1 - 0.099 12.6 0.6 0.35 10.9 0.1 2.1 1 1 0 2 2 2 0 Immunity protein 35 | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:476128-476424 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~476128-476424 Tryp_alpha_amyl PF00234.17 g55147.t1 - 0.094 12.9 0.1 0.14 12.4 0.1 1.2 1 0 0 1 1 1 0 Protease inhibitor/seed storage/LTP family | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:30376-30813 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~30376-30813 Transformer PF06495.6 g38045.t1 - 0.2 11.4 2.7 0.22 11.3 1.9 1.1 1 0 0 1 1 1 0 Fruit fly transformer protein | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:91500-93652 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~91500-93652 Mu-like_Pro PF10123.4 g55943.t1 - 0.077 12.4 4.9 0.077 12.4 3.4 1 1 0 0 1 1 1 0 Mu-like prophage I protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:196857-197186 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~196857-197186 Minor_capsid_3 PF12691.2 g60674.t1 - 0.0086 15.7 0 0.034 13.8 0 1.8 1 1 1 2 2 2 2 Minor capsid protein from bacteriophage | Ref_seq=scaffold1312_contigs=3, transcript_loc=scaffold1312_contigs=3:1-1556 Augustus predicted protein sequence Tobacco scaffold1312_contigs=3~1-1556 PBAN PF05874.6 g3962.t1 - 0.12 11.7 0.1 0.14 11.5 0 1.1 1 0 0 1 1 1 0 Pheromone biosynthesis activating neuropeptide (PBAN) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:158855-159407 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~158855-159407 DOMON PF03351.12 g62812.t1 - 0.078 12.9 0 0.14 12.1 0 1.4 1 0 0 1 1 1 0 DOMON domain | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:408881-409246 Augustus predicted protein sequence Tobacco scaffold1357_contigs=25~408881-409246 CAP_N PF01213.14 g107203.t1 - 1.2 8.3 7.1 0.094 11.9 1.7 1.4 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:893742-894344 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~893742-894344 FerA PF08165.6 g12933.t1 - 0.079 12.6 0 0.12 12 0 1.2 1 0 0 1 1 1 0 FerA (NUC095) domain | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:118692-118967 Augustus predicted protein sequence Tobacco scaffold436_contigs=4~118692-118967 Flavin_Reduct PF01613.13 g60000.t1 - 1.5 8.6 6.1 2.8 7.7 4.2 1.5 1 1 0 1 1 1 0 Flavin reductase like domain | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:41814-43034 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~41814-43034 DASH_Dad2 PF08654.5 g42560.t1 - 0.00033 20.6 0 0.00039 20.3 0 1.1 1 0 0 1 1 1 1 DASH complex subunit Dad2 | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:61730-62029 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~61730-62029 Red1 PF07964.6 g593.t1 - 0.4 8.7 5 0.54 8.3 3.5 1.1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:28672-29652 Augustus predicted protein sequence Tobacco scaffold31_contigs=1~28672-29652 Macoilin PF09726.4 g90910.t1 - 0.21 9.8 2.3 0.22 9.7 1.6 1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:122298-122932 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~122298-122932 RFX5_DNA_bdg PF14621.1 g92959.t1 - 0.028 14 6.4 0.062 12.9 4.4 1.6 1 1 0 1 1 1 0 RFX5 DNA-binding domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:330368-330766 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~330368-330766 gag-asp_proteas PF13975.1 g47236.t1 - 0.093 12.5 0 0.14 11.9 0 1.3 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold1090_contigs=11, transcript_loc=scaffold1090_contigs=11:47900-48205 Augustus predicted protein sequence Tobacco scaffold1090_contigs=11~47900-48205 DUF2028 PF09667.5 g1391.t1 - 0.076 13.1 0.2 0.083 13 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2028) | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:22578-22787 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~22578-22787 OAD_gamma PF04277.8 g120784.t1 - 0.069 13.5 2.1 0.21 12 0.7 2.1 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:142296-143534 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~142296-143534 Peptidase_S68 PF10461.4 g12830.t1 - 0.0054 16.4 0 0.017 14.8 0 1.9 2 0 0 2 2 2 1 Peptidase S68 | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:6575-6826 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~6575-6826 DUF3340 PF11818.3 g126083.t1 - 1.1 9.1 8.7 1.3 8.9 6 1.1 1 0 0 1 1 1 0 C-terminal domain of tail specific protease (DUF3340) | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:106645-107010 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~106645-107010 zf-HYPF PF07503.7 g127794.t1 - 4.7 6.6 7.8 44 3.6 0.1 3.5 3 0 0 3 3 3 0 HypF finger | Ref_seq=scaffold2837_contigs=1, transcript_loc=scaffold2837_contigs=1:4035-5886 Augustus predicted protein sequence Tobacco scaffold2837_contigs=1~4035-5886 WRC PF08879.5 g21033.t1 - 0.17 11.5 2.5 0.98 9.1 1.7 2.1 1 1 0 1 1 1 0 WRC | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:291461-291715 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~291461-291715 DUF466 PF04328.8 g59268.t1 - 0.34 10.7 1.7 0.41 10.5 0.2 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF466) | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:62057-63186 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~62057-63186 DUF4559 PF15112.1 g51719.t1 - 0.028 13.6 0.2 0.032 13.4 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:62061-64043 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~62061-64043 Fibrinogen_aC PF12160.3 g59857.t1 - 0.071 12.5 0.5 0.11 12 0.4 1.4 1 0 0 1 1 1 0 Fibrinogen alpha C domain | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:22782-23039 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~22782-23039 DUF2422 PF10337.4 g47473.t1 - 0.69 8.6 5.7 0.91 8.2 3.5 1.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2422) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:72899-73318 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~72899-73318 RVT_3 PF13456.1 g53511.t1 - 0.016 14.9 0.2 0.059 13.1 0.2 2 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:503148-505111 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~503148-505111 DUF2484 PF10658.4 g55884.t1 - 0.084 13 1.3 8.9 6.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2484) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:29353-31355 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~29353-31355 EPO_TPO PF00758.13 g58226.t1 - 0.016 14.8 0 0.033 13.8 0 1.5 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:332254-332718 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~332254-332718 DNAP_B_exo_N PF08452.5 g18072.t1 - 0.09 12 0.9 8.7 5.7 0 2.3 2 0 0 2 2 2 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:101176-101412 Augustus predicted protein sequence Tobacco scaffold541_contigs=3~101176-101412 RVT_3 PF13456.1 g9898.t1 - 0.071 12.8 0 0.092 12.5 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:293086-293427 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~293086-293427 TOBE PF03459.12 g77046.t1 - 0.12 12.5 0 0.31 11.1 0 1.6 1 0 0 1 1 1 0 TOBE domain | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:83744-84526 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~83744-84526 F-box-like PF12937.2 g83247.t1 - 0.000049 22.9 1.1 0.00014 21.4 0.7 1.8 1 0 0 1 1 1 1 F-box-like | Ref_seq=scaffold1781_contigs=3, transcript_loc=scaffold1781_contigs=3:47586-48449 Augustus predicted protein sequence Tobacco scaffold1781_contigs=3~47586-48449 IBV_3A PF03617.8 g8304.t1 - 0.054 13.2 0.4 0.084 12.6 0.3 1.3 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:135726-136121 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~135726-136121 Vir_act_alpha_C PF10400.4 g92423.t1 - 0.37 11.1 6.7 0.28 11.5 0.5 2.3 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:30454-31275 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~30454-31275 DUF1411 PF07199.6 g45538.t1 - 0.099 12 0 0.11 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:110127-110434 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~110127-110434 PT PF04886.7 g122629.t1 - 0.32 10.3 2.6 6 6.2 0.1 2.5 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:10965-12933 Augustus predicted protein sequence Tobacco scaffold2747_contigs=3~10965-12933 Chromo PF00385.19 g28509.t1 - 0.000000025 33.4 0.2 0.000000029 33.2 0.2 1.1 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:40485-40685 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~40485-40685 WHIM1 PF15612.1 g129210.t1 - 0.021 14.7 1.3 7.8 6.6 0.1 2.5 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 1 | Ref_seq=scaffold2926_contigs=1, transcript_loc=scaffold2926_contigs=1:6264-7082 Augustus predicted protein sequence Tobacco scaffold2926_contigs=1~6264-7082 ATHILA PF03078.10 g45577.t1 - 0.13 10.8 0 0.13 10.8 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:174246-174494 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~174246-174494 DUF3346 PF11826.3 g125968.t1 - 0.051 13.3 0 0.069 12.9 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3346) | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:101918-102540 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~101918-102540 Dynactin_p22 PF07426.6 g74972.t1 - 0.00051 19.3 0.6 0.00063 19 0.4 1.1 1 0 0 1 1 1 1 Dynactin subunit p22 | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:195184-195576 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~195184-195576 SAM_1 PF00536.25 g127114.t1 - 0.049 13.8 0 0.086 13 0 1.4 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) | Ref_seq=scaffold2813_contigs=1, transcript_loc=scaffold2813_contigs=1:70353-70868 Augustus predicted protein sequence Tobacco scaffold2813_contigs=1~70353-70868 Rep_4 PF05797.6 g109984.t1 - 0.036 12.7 0 0.05 12.3 0 1.1 1 0 0 1 1 1 0 Yeast trans-acting factor (REP1/REP2) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:95097-96128 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~95097-96128 ATHILA PF03078.10 g37667.t1 - 0.0000056 25.2 0 0.00029 19.5 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:173224-173613 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~173224-173613 ERp29_N PF07912.8 g18276.t1 - 0.02 14.8 0.1 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 ERp29, N-terminal domain | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:28322-28788 Augustus predicted protein sequence Tobacco scaffold549_contigs=4~28322-28788 V_ATPase_I PF01496.14 g23296.t1 - 3.6 5.3 5.4 4.5 4.9 3.8 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:64884-65912 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~64884-65912 DUF4463 PF14703.1 g117419.t1 - 0.082 13.4 0.4 0.12 12.8 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4463) | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:128112-128602 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~128112-128602 RXT2_N PF08595.6 g7278.t1 - 0.00095 18.9 3.1 0.001 18.8 2.1 1.1 1 0 0 1 1 1 1 RXT2-like, N-terminal | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:82072-82883 Augustus predicted protein sequence Tobacco scaffold311_contigs=5~82072-82883 SpoOE-like PF09388.5 g12740.t1 - 0.039 13.4 0 0.61 9.6 0 2 2 0 0 2 2 2 0 Spo0E like sporulation regulatory protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:375654-375860 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~375654-375860 Myosin_tail_1 PF01576.14 g126601.t1 - 0.00051 17.9 1.3 0.00051 17.9 0.9 1.6 2 0 0 2 2 2 1 Myosin tail | Ref_seq=scaffold2800_contigs=1, transcript_loc=scaffold2800_contigs=1:26039-26659 Augustus predicted protein sequence Tobacco scaffold2800_contigs=1~26039-26659 KTSC PF13619.1 g107477.t1 - 0.074 12.6 0 0.097 12.3 0 1.1 1 0 0 1 1 1 0 KTSC domain | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:90289-90519 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~90289-90519 UBN2_2 PF14227.1 g32430.t1 - 0.059 12.9 0.3 0.081 12.4 0.2 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:126983-127252 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~126983-127252 FAM219A PF15260.1 g67268.t1 - 0.12 12.7 0 0.12 12.6 0 1.1 1 0 0 1 1 1 0 Protein family FAM219A | Ref_seq=scaffold1446_contigs=1, transcript_loc=scaffold1446_contigs=1:15243-16820 Augustus predicted protein sequence Tobacco scaffold1446_contigs=1~15243-16820 Serendipity_A PF05482.7 g38525.t1 - 0.073 11.4 0.4 0.085 11.2 0.3 1 1 0 0 1 1 1 0 Serendipity locus alpha protein (SRY-A) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:134592-135038 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~134592-135038 DUF1625 PF07787.7 g22616.t1 - 1.7 7.8 4 1.9 7.6 2.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:407160-407363 Augustus predicted protein sequence Tobacco scaffold623_contigs=13~407160-407363 zf-CCHC_4 PF14392.1 g118062.t1 - 0.047 13.3 0.6 0.068 12.8 0.4 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:80157-80360 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~80157-80360 MTP18 PF10558.4 g92542.t1 - 0.023 14.5 0 4.4 7.1 0 2.1 2 0 0 2 2 2 0 Mitochondrial 18 KDa protein (MTP18) | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:4705-5193 Augustus predicted protein sequence Tobacco scaffold1993_contigs=21~4705-5193 Fer2_4 PF13510.1 g88751.t1 - 0.052 13.3 0.1 13 5.7 0 2.2 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:35256-36581 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~35256-36581 Herpes_ICP4_N PF03584.10 g40578.t1 - 0.012 15.1 0 0.013 15 0 1 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein N-terminal region | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:42330-42605 Augustus predicted protein sequence Tobacco scaffold979_contigs=3~42330-42605 APG6 PF04111.7 g7136.t1 - 0.012 14.6 2.6 0.02 13.9 1.8 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:118026-119517 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~118026-119517 Tropomyosin PF00261.15 g37216.t1 - 0.046 12.8 0.1 0.048 12.7 0.1 1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:76121-76396 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~76121-76396 ATG16 PF08614.6 g72859.t1 - 0.0048 16.7 6.2 0.0074 16.1 4.3 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:34008-35655 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~34008-35655 MRP-L46 PF11788.3 g7061.t1 - 0.014 16 2.9 0.016 15.8 2 1 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:115680-115931 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~115680-115931 DUF3289 PF11692.3 g71148.t1 - 0.0092 15.2 0.6 0.013 14.7 0.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3289) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:131373-132017 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~131373-132017 TFIIS_M PF07500.9 g4421.t1 - 0.063 13.3 0.1 0.089 12.8 0.1 1.1 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS), central domain | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:192422-193190 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~192422-193190 ATHILA PF03078.10 g117245.t1 - 0.011 14.3 0.1 0.013 14.1 0.1 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:208525-208830 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~208525-208830 Trehalase PF01204.13 g35632.t1 - 0.094 11.3 6.2 0.12 10.9 4.3 1.1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:249040-249671 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~249040-249671 DUF4219 PF13961.1 g10564.t1 - 0.000029 23.3 0.1 0.000047 22.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:292851-293561 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~292851-293561 UBN2 PF14223.1 g27464.t1 - 0.00035 20.3 0.5 0.023 14.4 0.1 2.3 2 0 0 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:183387-183851 Augustus predicted protein sequence Tobacco scaffold725_contigs=8~183387-183851 Gag_MA PF01140.14 g2445.t1 - 0.098 12.5 0 0.18 11.6 0 1.4 1 0 0 1 1 1 0 Matrix protein (MA), p15 | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:16517-17179 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~16517-17179 DUF4248 PF14053.1 g11665.t1 - 0.11 12.1 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold410_contigs=1, transcript_loc=scaffold410_contigs=1:1598-1837 Augustus predicted protein sequence Tobacco scaffold410_contigs=1~1598-1837 Med5 PF08689.5 g17750.t1 - 0.00048 17.9 0.7 0.00052 17.8 0.5 1 1 0 0 1 1 1 1 Mediator complex subunit Med5 | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:92834-93331 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~92834-93331 DNA_pol_phi PF04931.8 g67371.t1 - 0.086 10.6 1.8 0.099 10.4 1.3 1 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:160335-160583 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~160335-160583 AAA_22 PF13401.1 g96968.t1 - 0.069 13.2 0 0.091 12.9 0 1.3 1 1 0 1 1 1 0 AAA domain | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:198062-198367 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~198062-198367 YgaB PF14182.1 g35621.t1 - 0.04 14.1 2.8 0.27 11.4 1.9 2 1 1 0 1 1 1 0 YgaB-like protein | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:233010-233380 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~233010-233380 DUF1347 PF07079.6 g89727.t1 - 0.12 10.5 0 0.13 10.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:247375-247836 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~247375-247836 PrcB_C PF14343.1 g111940.t1 - 0.0066 16.1 0.1 3.9 7.2 0 3 1 1 2 3 3 3 3 PrcB C-terminal | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:136841-138120 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~136841-138120 Tropomyosin PF00261.15 g83389.t1 - 0.078 12 0.1 0.091 11.8 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:13573-13986 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~13573-13986 IFP_35_N PF07334.8 g51166.t1 - 0.061 13.2 1.1 0.061 13.2 0.7 1.8 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:101194-101610 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~101194-101610 DUF1639 PF07797.9 g37068.t1 - 0.055 12.8 0.2 0.24 10.8 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1639) | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:11857-12153 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~11857-12153 SASP PF00269.15 g25598.t1 - 3.7 7.4 6.9 19 5.2 0 2.5 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:72948-73238 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~72948-73238 RVT_2 PF07727.9 g56191.t1 - 0.16 10.9 0 0.19 10.6 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:205439-205660 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~205439-205660 ENT PF03735.9 g77679.t1 - 0.11 12.2 0 0.21 11.3 0 1.5 1 0 0 1 1 1 0 ENT domain | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:63731-64400 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~63731-64400 Microtub_assoc PF07989.6 g45115.t1 - 0.076 12.8 0.4 0.1 12.4 0.3 1.1 1 0 0 1 1 1 0 Microtubule associated | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:447254-448185 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~447254-448185 Dehydratase_hem PF13816.1 g41238.t1 - 0.044 12.8 0 0.052 12.5 0 1 1 0 0 1 1 1 0 Haem-containing dehydratase | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:91909-92283 Augustus predicted protein sequence Tobacco scaffold985_contigs=1~91909-92283 SMRP1 PF15181.1 g29759.t1 - 0.087 12.1 0 0.093 12.1 0 1 1 0 0 1 1 1 0 Spermatid-specific manchette-related protein 1 | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:45905-46479 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~45905-46479 FeoC PF09012.5 g51204.t1 - 0.11 12.1 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:70968-71836 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~70968-71836 DUF3159 PF11361.3 g118238.t1 - 0.0015 18 3.8 0.49 9.8 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3159) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:161522-163831 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~161522-163831 PetN PF03742.9 g130521.t1 - 0.72 9.4 2.7 1.2 8.8 1.8 1.4 1 0 0 1 1 1 0 PetN | Ref_seq=scaffold4838_contigs=1, transcript_loc=scaffold4838_contigs=1:1-211 Augustus predicted protein sequence Tobacco scaffold4838_contigs=1~1-211 zf-CCHC_4 PF14392.1 g49047.t1 - 0.00043 19.8 0.7 0.00065 19.3 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:45698-45916 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~45698-45916 Fer4_19 PF06902.6 g64695.t1 - 0.03 14.1 0 0.12 12.2 0 1.8 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:298479-298715 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~298479-298715 DBD_Tnp_Mut PF03108.10 g55865.t1 - 0.0000025 26.9 0.4 0.0000038 26.3 0.3 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1235_contigs=3, transcript_loc=scaffold1235_contigs=3:21854-22446 Augustus predicted protein sequence Tobacco scaffold1235_contigs=3~21854-22446 DBD_Tnp_Mut PF03108.10 g96920.t1 - 0.000016 24.4 0 0.000029 23.5 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:118096-118419 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~118096-118419 PC4 PF02229.11 g87036.t1 - 0.000051 22.4 0 0.12 11.6 0 2.5 2 0 0 2 2 2 2 Transcriptional Coactivator p15 (PC4) | Ref_seq=scaffold1865_contigs=13, transcript_loc=scaffold1865_contigs=13:13317-15850 Augustus predicted protein sequence Tobacco scaffold1865_contigs=13~13317-15850 FtsX PF02687.16 g45658.t1 - 0.026 14.2 0 0.027 14.2 0 1.1 1 0 0 1 1 1 0 FtsX-like permease family | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:306497-306793 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~306497-306793 Mago-bind PF09282.5 g58203.t1 - 0.052 13.1 0.1 0.12 11.9 0.1 1.6 1 0 0 1 1 1 0 Mago binding | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:252570-252935 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~252570-252935 UTP15_C PF09384.5 g17059.t1 - 0.092 12.4 0.1 0.11 12.1 0 1.1 1 0 0 1 1 1 0 UTP15 C terminal | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:383550-383905 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~383550-383905 RAP1 PF07218.6 g54982.t1 - 2.6 6 10.6 2.6 6 7.4 1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:287121-288565 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~287121-288565 UBN2_2 PF14227.1 g15092.t1 - 0.00018 21 0 0.00031 20.2 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:201386-201941 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~201386-201941 ATHILA PF03078.10 g52462.t1 - 0.000097 21.1 0 0.02 13.5 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:308020-309586 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~308020-309586 BetaGal_dom2 PF10435.4 g105579.t1 - 0.022 14.1 0.9 0.023 14 0.6 1 1 0 0 1 1 1 0 Beta-galactosidase, domain 2 | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:59358-59570 Augustus predicted protein sequence Tobacco scaffold2357_contigs=7~59358-59570 Carb_anhydrase PF00194.16 g70773.t1 - 0.028 13.4 0.1 0.035 13 0.1 1.2 1 0 0 1 1 1 0 Eukaryotic-type carbonic anhydrase | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:146170-147101 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~146170-147101 Nbl1_Borealin_N PF10444.4 g125762.t1 - 0.074 12.4 0.3 0.64 9.4 0 2.1 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:87457-88900 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~87457-88900 Flu_M2 PF00599.12 g20495.t1 - 0.07 12.9 0.1 0.081 12.7 0.1 1.2 1 0 0 1 1 1 0 Influenza Matrix protein (M2) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:368548-368850 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~368548-368850 WbqC PF08889.6 g28166.t1 - 0.028 13.8 1.1 0.033 13.6 0.8 1.1 1 0 0 1 1 1 0 WbqC-like protein family | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:18024-18758 Augustus predicted protein sequence Tobacco scaffold740_contigs=1~18024-18758 Nucleoplasmin PF03066.10 g70701.t1 - 0.12 11.9 5.8 0.12 11.8 4 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:6348-6791 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~6348-6791 RVT_3 PF13456.1 g80515.t1 - 0.0024 17.6 0 0.0024 17.6 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:183899-184126 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~183899-184126 HALZ PF02183.13 g84457.t1 - 0.34 10.6 5.8 3.1 7.5 1.2 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:29108-30044 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~29108-30044 Matrilin_ccoil PF10393.4 g130511.t1 - 0.017 14.4 0 0.026 13.8 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold4772_contigs=1, transcript_loc=scaffold4772_contigs=1:224-557 Augustus predicted protein sequence Tobacco scaffold4772_contigs=1~224-557 Ribosomal_60s PF00428.14 g95876.t1 - 0.22 11.9 4.9 0.29 11.5 3.4 1.3 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:210441-210746 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~210441-210746 RAP-1 PF03085.10 g126793.t1 - 0.037 13.3 0 0.05 12.9 0 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:8098-8433 Augustus predicted protein sequence Tobacco scaffold2805_contigs=1~8098-8433 RCC1 PF00415.13 g12067.t1 - 0.0051 16.9 0 2.8 8.2 0 2.3 2 0 0 2 2 2 2 Regulator of chromosome condensation (RCC1) repeat | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:359012-359461 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~359012-359461 Dimer_Tnp_hAT PF05699.9 g35977.t1 - 0.0000035 26.5 0 0.0000058 25.8 0 1.4 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold879_contigs=9, transcript_loc=scaffold879_contigs=9:29981-30601 Augustus predicted protein sequence Tobacco scaffold879_contigs=9~29981-30601 DUF3450 PF11932.3 g122158.t1 - 0.015 14.5 0.2 0.021 14.1 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:381312-381614 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~381312-381614 Unstab_antitox PF09720.5 g126039.t1 - 0.065 12.9 0 0.17 11.6 0 1.7 1 0 0 1 1 1 0 Putative addiction module component | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:36285-37802 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~36285-37802 RPEL PF02755.10 g110697.t1 - 0.18 11.1 1 0.47 9.8 0.7 1.7 1 0 0 1 1 1 0 RPEL repeat | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:281236-282206 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~281236-282206 DUF3442 PF11924.3 g79944.t1 - 0.012 15.2 1.3 0.015 14.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3442) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:319747-321294 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~319747-321294 Evr1_Alr PF04777.8 g27227.t1 - 0.02 14.7 0.1 0.027 14.3 0.1 1.2 1 0 0 1 1 1 0 Erv1 / Alr family | Ref_seq=scaffold722_contigs=14, transcript_loc=scaffold722_contigs=14:378486-379655 Augustus predicted protein sequence Tobacco scaffold722_contigs=14~378486-379655 DUF2130 PF09903.4 g117172.t1 - 0.009 14.7 0 0.015 14 0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2130) | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:84925-85440 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~84925-85440 Spatacsin_C PF14649.1 g44002.t1 - 0.02 13.8 0.1 0.025 13.4 0.1 1.1 1 0 0 1 1 1 0 Spatacsin C-terminus | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:150348-152128 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~150348-152128 Peptidase_S39 PF02122.10 g80995.t1 - 0.061 12.6 0 0.068 12.4 0 1.1 1 0 0 1 1 1 0 Peptidase S39 | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:237688-238218 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~237688-238218 FlxA PF14282.1 g69020.t1 - 0.065 13.1 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:309769-310179 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~309769-310179 Serglycin PF04360.7 g13618.t1 - 0.083 12.6 1.1 0.081 12.6 0.8 1.1 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:1-146 Augustus predicted protein sequence Tobacco scaffold451_contigs=13~1-146 PLRV_ORF5 PF01690.12 g73901.t1 - 0.035 13.2 0.5 0.042 13 0.4 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:171061-172456 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~171061-172456 DMPK_coil PF08826.5 g117894.t1 - 0.35 10.7 2.4 2.6 8 0.1 2.6 3 0 0 3 3 3 0 DMPK coiled coil domain like | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:197331-199029 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~197331-199029 VGCC_beta4Aa_N PF12052.3 g113939.t1 - 0.0018 18.1 0.5 0.0023 17.7 0.3 1.3 1 0 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:780472-780852 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~780472-780852 MRI PF15325.1 g78506.t1 - 1.9 9.4 5.7 2.3 9.2 3.9 1.1 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold1652_contigs=9, transcript_loc=scaffold1652_contigs=9:80077-80557 Augustus predicted protein sequence Tobacco scaffold1652_contigs=9~80077-80557 zf-CCHC PF00098.18 g45001.t1 - 0.028 14.3 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:181192-181500 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~181192-181500 IL11 PF07400.6 g49826.t1 - 0.045 13.2 0.5 4.4 6.7 0.4 2.2 2 0 0 2 2 2 0 Interleukin 11 | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:196432-197541 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~196432-197541 ADK_lid PF05191.9 g101655.t1 - 0.0063 16.1 0.5 0.016 14.8 0.4 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid | Ref_seq=scaffold2216_contigs=4, transcript_loc=scaffold2216_contigs=4:27255-28471 Augustus predicted protein sequence Tobacco scaffold2216_contigs=4~27255-28471 MHCassoc_trimer PF08831.5 g33373.t1 - 0.0028 17.4 1.1 0.0049 16.6 0.8 1.4 1 0 0 1 1 1 1 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:130112-130989 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~130112-130989 DUF3119 PF11317.3 g21630.t1 - 0.11 12.5 0 0.12 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3119) | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:175069-175281 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~175069-175281 Neisseria_TspB PF05616.8 g85246.t1 - 0.092 11.1 6 0.13 10.6 4.2 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:9471-10274 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~9471-10274 OAD_gamma PF04277.8 g5520.t1 - 0.25 11.7 1 0.48 10.8 0.7 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:208061-208846 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~208061-208846 UBN2 PF14223.1 g8110.t1 - 0.0076 16 0 0.017 14.8 0 1.6 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:52091-52812 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~52091-52812 DUF3778 PF12620.3 g48797.t1 - 0.068 12.7 0.2 0.095 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:371822-372073 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~371822-372073 DUF1690 PF07956.6 g127292.t1 - 1.3 8.9 10.2 2.6 8 7.1 1.7 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:52604-53047 Augustus predicted protein sequence Tobacco scaffold2818_contigs=1~52604-53047 YIEGIA PF14045.1 g30057.t1 - 0.04 12.5 0 0.049 12.2 0 1 1 0 0 1 1 1 0 YIEGIA protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:313665-313901 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~313665-313901 DUF3954 PF13128.1 g104609.t1 - 0.00088 18.6 0 0.0017 17.7 0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3954) | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:177044-177439 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~177044-177439 zf-CCHC PF00098.18 g12038.t1 - 0.0049 16.7 1 0.0081 16 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:245493-247540 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~245493-247540 RCR PF12273.3 g87879.t1 - 0.11 13 4.1 0.14 12.6 2.9 1.2 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red | Ref_seq=scaffold1901_contigs=10, transcript_loc=scaffold1901_contigs=10:82030-82425 Augustus predicted protein sequence Tobacco scaffold1901_contigs=10~82030-82425 YdjO PF14169.1 g40283.t1 - 0.22 11 0.4 0.22 11 0.3 1.6 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:18108-18374 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~18108-18374 SurA_N_3 PF13624.1 g123710.t1 - 0.064 13.2 0.1 0.44 10.5 0.2 2 2 0 0 2 2 2 0 SurA N-terminal domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:342991-345568 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~342991-345568 IFP_35_N PF07334.8 g87269.t1 - 0.00096 19 5.9 1.7 8.6 0 3.7 4 0 0 4 4 4 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:175309-176076 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~175309-176076 Colicin_C PF12106.3 g7131.t1 - 0.12 12 0.1 0.24 11 0.1 1.5 1 0 0 1 1 1 0 Colicin C terminal ribonuclease domain | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:106747-107088 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~106747-107088 DUF3457 PF11939.3 g88259.t1 - 0.06 12.8 0.2 0.085 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3457) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:60332-61497 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~60332-61497 Antimicrobial10 PF08105.6 g50545.t1 - 0.05 13.2 0 3.8 7.1 0 2.7 3 0 0 3 3 3 0 Metchnikowin family | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:267619-268152 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~267619-268152 Phage_integrase PF00589.17 g56178.t1 - 0.097 12.3 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:191444-191920 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~191444-191920 bZIP_1 PF00170.16 g103991.t1 - 2.8 7.9 9.6 0.48 10.4 3.2 2.3 2 1 1 3 3 3 0 bZIP transcription factor | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:60630-64666 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~60630-64666 Mem_trans PF03547.13 g87922.t1 - 1.4 7.1 3.6 1.7 6.8 2.5 1 1 0 0 1 1 1 0 Membrane transport protein | Ref_seq=scaffold1902_contigs=4, transcript_loc=scaffold1902_contigs=4:7637-8585 Augustus predicted protein sequence Tobacco scaffold1902_contigs=4~7637-8585 Peptidase_M18 PF02127.10 g43948.t1 - 0.14 10.6 0.1 0.16 10.4 0.1 1 1 0 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:28448-28816 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~28448-28816 zf-CCHC PF00098.18 g29650.t1 - 0.031 14.1 3.7 0.058 13.3 2.6 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold764_contigs=3, transcript_loc=scaffold764_contigs=3:15228-15899 Augustus predicted protein sequence Tobacco scaffold764_contigs=3~15228-15899 ATHILA PF03078.10 g77898.t1 - 0.0078 14.8 0 0.0097 14.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:10191-11566 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~10191-11566 Adaptin_binding PF10199.4 g7352.t1 - 0.12 12.6 10.2 0.15 12.3 7.1 1.1 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:76636-77052 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~76636-77052 Arteri_Gl PF00951.13 g122537.t1 - 0.0041 16.7 0.1 0.0047 16.5 0 1.1 1 0 0 1 1 1 1 Arterivirus GL envelope glycoprotein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:196577-196819 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~196577-196819 Herpes_LMP2 PF07415.6 g114327.t1 - 4.1 5.8 6.6 5 5.6 4.6 1.1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:13555-14299 Augustus predicted protein sequence Tobacco scaffold2646_contigs=41~13555-14299 Mating_C PF12737.2 g7601.t1 - 0.086 11.7 2.4 0.087 11.6 1.6 1.1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:442221-442499 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~442221-442499 RVT_2 PF07727.9 g111196.t1 - 0.0017 17.4 0 0.0019 17.2 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:97220-97565 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~97220-97565 DUF4044 PF13253.1 g68109.t1 - 0.33 10.1 5.3 0.39 9.8 0.3 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF4044) | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:44402-45112 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~44402-45112 CENP-Q PF13094.1 g97162.t1 - 0.031 14.3 4.4 0.03 14.3 3 1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:166123-166383 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~166123-166383 Phage_fiber_2 PF03406.8 g107791.t1 - 0.0018 17.8 0.4 0.0034 16.9 0.3 1.5 1 0 0 1 1 1 1 Phage tail fibre repeat | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:117867-118358 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~117867-118358 DUF1985 PF09331.6 g63129.t1 - 0.00000054 29.5 0 0.00000088 28.8 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1368_contigs=16, transcript_loc=scaffold1368_contigs=16:34036-35430 Augustus predicted protein sequence Tobacco scaffold1368_contigs=16~34036-35430 NAM-associated PF14303.1 g62554.t1 - 0.01 16.1 4.4 0.014 15.6 3 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1351_contigs=1, transcript_loc=scaffold1351_contigs=1:15648-16046 Augustus predicted protein sequence Tobacco scaffold1351_contigs=1~15648-16046 Merozoite_SPAM PF07133.6 g80463.t1 - 0.0064 16.4 0.3 0.0088 15.9 0.2 1.2 1 0 0 1 1 1 1 Merozoite surface protein (SPAM) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:64051-64697 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~64051-64697 Cuticle_3 PF11018.3 g79861.t1 - 0.067 13.3 3.2 0.076 13.1 2.2 1.1 1 0 0 1 1 1 0 Pupal cuticle protein C1 | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:59569-59955 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~59569-59955 Stathmin PF00836.14 g27856.t1 - 0.1 12.2 1 0.13 11.9 0.7 1.1 1 0 0 1 1 1 0 Stathmin family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:422020-422778 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~422020-422778 DUF2186 PF09952.4 g103737.t1 - 0.0000027 27.7 0 0.044 14 0 2 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2186) | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:45367-46425 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~45367-46425 DBD_Tnp_Mut PF03108.10 g64036.t1 - 9.4E-009 34.7 0.1 0.000000021 33.6 0.1 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:215032-215947 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~215032-215947 Y_phosphatase3C PF13348.1 g115795.t1 - 0.059 13.4 0 0.091 12.8 0 1.3 1 0 0 1 1 1 0 Tyrosine phosphatase family C-terminal region | Ref_seq=scaffold2664_contigs=8, transcript_loc=scaffold2664_contigs=8:50838-51647 Augustus predicted protein sequence Tobacco scaffold2664_contigs=8~50838-51647 DUF963 PF06131.6 g88781.t1 - 3.3 7 5.6 18 4.7 0.4 2.6 2 0 0 2 2 2 0 Schizosaccharomyces pombe repeat of unknown function (DUF963) | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:120346-121122 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~120346-121122 DBD_Tnp_Mut PF03108.10 g122332.t1 - 0.00011 21.6 0.6 0.00019 20.9 0.1 1.7 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold2744_contigs=5, transcript_loc=scaffold2744_contigs=5:27175-27519 Augustus predicted protein sequence Tobacco scaffold2744_contigs=5~27175-27519 Transposase_28 PF04195.7 g112576.t1 - 0.001 18.4 0 0.0054 16 0 1.8 2 0 0 2 2 2 1 Putative gypsy type transposon | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:223935-225222 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~223935-225222 Prog_receptor PF02161.10 g83935.t1 - 0.00098 18 0.3 0.0012 17.8 0.2 1 1 0 0 1 1 1 1 Progesterone receptor | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:131068-131394 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~131068-131394 SOBP PF15279.1 g120214.t1 - 0.5 10.6 4 0.56 10.5 2.8 1 1 0 0 1 1 1 0 Sine oculis-binding protein | Ref_seq=scaffold2721_contigs=4, transcript_loc=scaffold2721_contigs=4:17741-18890 Augustus predicted protein sequence Tobacco scaffold2721_contigs=4~17741-18890 DUF3644 PF12358.3 g46648.t1 - 0.14 12.4 0 0.21 11.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3644) | Ref_seq=scaffold1073_contigs=9, transcript_loc=scaffold1073_contigs=9:15217-15420 Augustus predicted protein sequence Tobacco scaffold1073_contigs=9~15217-15420 ATHILA PF03078.10 g112106.t1 - 0.000000025 32.9 0 0.0000003 29.3 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2603_contigs=7, transcript_loc=scaffold2603_contigs=7:11964-12617 Augustus predicted protein sequence Tobacco scaffold2603_contigs=7~11964-12617 DUF3285 PF11688.3 g47605.t1 - 0.22 11.1 1.2 0.43 10.2 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:315816-316589 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~315816-316589 4HBT_3 PF13622.1 g125973.t1 - 0.069 12.8 1.9 0.071 12.8 1.3 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:109875-110423 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~109875-110423 GAS PF13851.1 g7548.t1 - 0.0037 16.4 2.9 0.0039 16.4 2 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:336991-337353 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~336991-337353 Autophagy_Cterm PF10381.4 g20606.t1 - 2.6 7.2 6.1 16 4.6 0.1 2.9 3 0 0 3 3 3 0 Autophagocytosis associated protein C-terminal | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:535861-536409 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~535861-536409 Macoilin PF09726.4 g52500.t1 - 0.024 12.9 0.7 0.027 12.7 0.5 1.1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:380432-380728 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~380432-380728 MSSP PF03940.8 g105302.t1 - 0.0076 15.6 3.4 0.0076 15.6 2.3 1.6 2 0 0 2 2 2 1 Male specific sperm protein | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:250193-251812 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~250193-251812 Pox_Ag35 PF03286.9 g26788.t1 - 0.063 12.8 3.8 0.07 12.6 2.6 1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:315923-316153 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~315923-316153 Chromo PF00385.19 g117953.t1 - 0.0000044 26.2 0 0.0000057 25.9 0 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:79710-80033 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~79710-80033 CheW PF01584.14 g46929.t1 - 0.011 15.1 0 0.012 15 0 1.1 1 0 0 1 1 1 0 CheW-like domain | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:145076-145333 Augustus predicted protein sequence Tobacco scaffold1081_contigs=4~145076-145333 Leu_zip PF15294.1 g95827.t1 - 0.014 14.5 7.2 0.017 14.2 5 1 1 0 0 1 1 1 0 Leucine zipper | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:52835-53167 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~52835-53167 SMN PF06003.7 g36907.t1 - 1.3 8 8 1.7 7.6 5.6 1.4 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:8308-9051 Augustus predicted protein sequence Tobacco scaffold904_contigs=3~8308-9051 Eclosion PF04736.7 g11130.t1 - 0.042 13.2 0.1 0.098 12.1 0.1 1.6 1 1 0 1 1 1 0 Eclosion hormone | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:163871-165714 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~163871-165714 Romo1 PF10247.4 g14991.t1 - 0.098 12.8 0.6 2.3 8.5 0.4 2.3 1 1 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:597-1152 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~597-1152 Tyr-DNA_phospho PF06087.7 g85699.t1 - 0.11 11 0 0.13 10.9 0 1.1 1 0 0 1 1 1 0 Tyrosyl-DNA phosphodiesterase | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:369613-370011 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~369613-370011 RVT_3 PF13456.1 g49966.t1 - 0.000006 25.9 0 0.0000083 25.5 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:462259-464094 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~462259-464094 DUF1255 PF06865.6 g42528.t1 - 0.029 14.6 0 1.2 9.4 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1255) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:67425-67851 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~67425-67851 PRY PF13765.1 g128155.t1 - 0.0026 17.2 0.1 1 8.9 0 2.5 2 0 0 2 2 2 2 SPRY-associated domain | Ref_seq=scaffold2852_contigs=1, transcript_loc=scaffold2852_contigs=1:25002-25913 Augustus predicted protein sequence Tobacco scaffold2852_contigs=1~25002-25913 zf-CCHC PF00098.18 g55062.t1 - 0.018 14.9 0.3 0.031 14.2 0.2 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:481587-481961 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~481587-481961 Adeno_52K PF03052.10 g3377.t1 - 0.13 11.4 0.4 0.14 11.3 0.3 1 1 0 0 1 1 1 0 Adenoviral protein L1 52/55-kDa | Ref_seq=scaffold231_contigs=3, transcript_loc=scaffold231_contigs=3:80691-81687 Augustus predicted protein sequence Tobacco scaffold231_contigs=3~80691-81687 Sec2p PF06428.6 g7645.t1 - 0.00086 19.1 2.5 0.0015 18.3 1.8 1.5 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p | Ref_seq=scaffold316_contigs=3, transcript_loc=scaffold316_contigs=3:18869-19671 Augustus predicted protein sequence Tobacco scaffold316_contigs=3~18869-19671 PBP1_TM PF14812.1 g25270.t1 - 0.012 15.9 1.9 0.016 15.4 1.3 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold691_contigs=5, transcript_loc=scaffold691_contigs=5:73331-74073 Augustus predicted protein sequence Tobacco scaffold691_contigs=5~73331-74073 V-ATPase_H_N PF03224.9 g115865.t1 - 0.092 11.8 0 0.095 11.7 0 1.1 1 0 0 1 1 1 0 V-ATPase subunit H | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:131546-133700 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~131546-133700 Zea_mays_MuDR PF05928.6 g36891.t1 - 0.039 13.3 0 0.041 13.2 0 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) | Ref_seq=scaffold903_contigs=3, transcript_loc=scaffold903_contigs=3:58248-58493 Augustus predicted protein sequence Tobacco scaffold903_contigs=3~58248-58493 DUF1635 PF07795.6 g63299.t1 - 0.047 13 0 0.075 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:167952-168932 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~167952-168932 CAF-1_p150 PF11600.3 g10122.t1 - 0.01 15.2 11.8 0.012 14.9 8.2 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:65345-65566 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~65345-65566 Toxin_8 PF07365.7 g63368.t1 - 0.16 11.9 0.3 0.5 10.3 0.2 1.8 1 0 0 1 1 1 0 Alpha conotoxin precursor | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:53862-54548 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~53862-54548 ASD1 PF08688.5 g49529.t1 - 0.031 14 0.5 0.041 13.6 0.4 1.1 1 0 0 1 1 1 0 Apx/Shroom domain ASD1 | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:895374-897513 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~895374-897513 FLO_LFY PF01698.11 g43915.t1 - 0.016 14 3.4 0.021 13.6 2.4 1.1 1 0 0 1 1 1 0 Floricaula / Leafy protein | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:341856-342944 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~341856-342944 QLQ PF08880.6 g120974.t1 - 0.5 9.8 0.2 0.5 9.8 0.1 3.8 3 2 1 4 4 4 0 QLQ | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:128846-129130 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~128846-129130 CD52 PF15116.1 g81700.t1 - 0.056 13.2 1.1 1.7 8.5 0 2.3 2 0 0 2 2 2 0 CAMPATH-1 antigen | Ref_seq=scaffold1734_contigs=1, transcript_loc=scaffold1734_contigs=1:59535-59855 Augustus predicted protein sequence Tobacco scaffold1734_contigs=1~59535-59855 RVP_2 PF08284.6 g28771.t1 - 0.00000035 30.2 0 0.00000046 29.8 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:226026-226439 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~226026-226439 FRG1 PF06229.7 g56434.t1 - 0.097 12.1 5.3 0.11 11.9 3.7 1.1 1 0 0 1 1 1 0 FRG1-like family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:122878-124069 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~122878-124069 GAF_3 PF13492.1 g119181.t1 - 0.024 14.7 0 0.027 14.5 0 1.1 1 0 0 1 1 1 0 GAF domain | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:42566-45125 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~42566-45125 HR1 PF02185.11 g119665.t1 - 0.013 15.1 0.2 0.019 14.7 0.2 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:195082-195360 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~195082-195360 UBN2 PF14223.1 g1848.t1 - 0.01 15.6 0.7 0.041 13.6 0 1.9 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:54810-55294 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~54810-55294 DUF2238 PF09997.4 g77501.t1 - 0.00096 18.5 0.1 1.5 8.2 0 2.2 2 0 0 2 2 2 2 Predicted membrane protein (DUF2238) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:208813-210228 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~208813-210228 UPF0561 PF10573.4 g74687.t1 - 0.046 13.5 0.2 0.049 13.4 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:81388-81726 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~81388-81726 Stc1 PF12898.2 g70490.t1 - 0.11 12.5 1 0.18 11.8 0.7 1.4 1 0 0 1 1 1 0 Stc1 domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:116156-116491 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~116156-116491 DUF1769 PF08588.5 g21326.t1 - 0.12 12.3 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1769) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:119704-120113 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~119704-120113 RVT_3 PF13456.1 g54073.t1 - 0.000000024 33.6 0 0.00000003 33.3 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:208562-208816 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~208562-208816 zf-RVT PF13966.1 g99512.t1 - 0.0000002 31.2 0.3 0.0000017 28.2 0 2.1 2 0 0 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:725486-726511 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~725486-726511 DUF4283 PF14111.1 g86868.t1 - 0.024 13.7 0.1 0.038 13 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:169701-170170 Augustus predicted protein sequence Tobacco scaffold1863_contigs=15~169701-170170 CCDC144C PF14915.1 g60082.t1 - 0.12 11.2 1.4 0.15 10.9 1 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:276417-277358 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~276417-277358 DUF243 PF03103.12 g24778.t1 - 0.12 12.4 0 0.94 9.6 0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF243) | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:68732-69040 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~68732-69040 Papilloma_E5 PF03025.9 g28777.t1 - 0.24 11.3 5.5 0.078 12.9 1.3 2.1 1 1 0 2 2 2 0 Papillomavirus E5 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:236434-237187 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~236434-237187 RVT_3 PF13456.1 g109533.t1 - 0.0000038 26.5 0 0.0000051 26.1 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2511_contigs=22, transcript_loc=scaffold2511_contigs=22:86350-86780 Augustus predicted protein sequence Tobacco scaffold2511_contigs=22~86350-86780 Myosin_tail_1 PF01576.14 g56240.t1 - 0.012 13.4 1.9 0.014 13.1 1.3 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:304404-304929 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~304404-304929 RNase_E_G PF10150.4 g42217.t1 - 0.094 11.9 0.2 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease E/G family | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:196606-197669 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~196606-197669 NAM PF02365.10 g104396.t1 - 0.002 18.3 0 0.0029 17.8 0 1.3 1 0 0 1 1 1 1 No apical meristem (NAM) protein | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:9840-10217 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~9840-10217 Ribosomal_L37e PF01907.14 g92301.t1 - 0.085 12.6 1 5.6 6.8 0 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:250158-250460 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~250158-250460 UBN2_3 PF14244.1 g108811.t1 - 0.088 12.3 0.3 0.16 11.5 0.1 1.5 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:280249-280473 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~280249-280473 DUF1985 PF09331.6 g4775.t1 - 0.014 15.2 0 0.016 15 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold263_contigs=4, transcript_loc=scaffold263_contigs=4:131121-131892 Augustus predicted protein sequence Tobacco scaffold263_contigs=4~131121-131892 BpuJI_N PF11564.3 g102413.t1 - 0.012 14.5 1.8 0.014 14.3 1.2 1.1 1 0 0 1 1 1 0 Restriction endonuclease BpuJI - N terminal | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:159772-160334 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~159772-160334 Hpt PF01627.18 g78740.t1 - 0.012 15.6 0 0.019 14.9 0 1.5 1 1 0 1 1 1 0 Hpt domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:71118-71450 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~71118-71450 Herpes_US12 PF05363.7 g56251.t1 - 0.00051 20.4 0.3 0.0054 17.2 0 2.5 2 1 1 3 3 3 1 Herpesvirus US12 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:318017-318481 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~318017-318481 Varsurf_PPLC PF03490.8 g45413.t1 - 0.18 11.5 2.2 0.77 9.4 1.5 2.1 1 1 0 1 1 1 0 Variant-surface-glycoprotein phospholipase C | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:403402-403848 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~403402-403848 HALZ PF02183.13 g42626.t1 - 0.016 14.9 0.4 0.016 14.9 0.3 3.1 2 1 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:182643-183146 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~182643-183146 RVT_3 PF13456.1 g59159.t1 - 0.00000085 28.6 0.1 0.04 13.7 0 2.4 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:38472-39109 Augustus predicted protein sequence Tobacco scaffold1283_contigs=15~38472-39109 CAF-1_p150 PF11600.3 g120993.t1 - 0.00085 18.7 29.7 0.00097 18.5 20.6 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:183537-183974 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~183537-183974 FGGY_N PF00370.16 g56445.t1 - 0.12 11.6 0 0.14 11.4 0 1 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:150479-150691 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~150479-150691 RVT_3 PF13456.1 g42100.t1 - 0.027 14.2 0 0.032 13.9 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:7683-7901 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~7683-7901 BCA_ABC_TP_C PF12399.3 g11854.t1 - 0.11 12.1 0 0.22 11.2 0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:35876-36112 Augustus predicted protein sequence Tobacco scaffold416_contigs=9~35876-36112 DUF4172 PF13776.1 g6038.t1 - 0.15 12.1 3.1 8 6.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold290_contigs=8, transcript_loc=scaffold290_contigs=8:116065-116947 Augustus predicted protein sequence Tobacco scaffold290_contigs=8~116065-116947 WRC PF08879.5 g5828.t1 - 0.22 11.2 2 0.39 10.4 1.4 1.4 1 0 0 1 1 1 0 WRC | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:48729-49210 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~48729-49210 DUF3445 PF11927.3 g93340.t1 - 0.045 13.1 0 0.048 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:90873-91262 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~90873-91262 DBD_Tnp_Mut PF03108.10 g17833.t1 - 1.5E-010 40.4 1.7 3.4E-010 39.3 1.1 1.5 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:322821-323081 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~322821-323081 HALZ PF02183.13 g8230.t1 - 0.0042 16.7 8.7 0.051 13.2 0.6 2.6 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:32514-32864 Augustus predicted protein sequence Tobacco scaffold332_contigs=3~32514-32864 TOBE_3 PF12857.2 g62371.t1 - 0.11 12.3 0.5 0.31 10.9 0.4 1.8 1 1 0 1 1 1 0 TOBE-like domain | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:12270-12614 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~12270-12614 DMAP_binding PF06464.6 g31257.t1 - 0.079 13.5 0.8 0.12 13 0.5 1.3 1 0 0 1 1 1 0 DMAP1-binding Domain | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:224320-224750 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~224320-224750 Herpes_DNAp_acc PF04929.7 g116219.t1 - 2.1 7.1 7.2 2.6 6.9 5 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:193244-195951 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~193244-195951 DBD_Tnp_Mut PF03108.10 g110134.t1 - 0.087 12.4 0.1 0.14 11.7 0 1.4 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:26631-26951 Augustus predicted protein sequence Tobacco scaffold2526_contigs=3~26631-26951 DUF1978 PF09321.5 g77624.t1 - 0.00067 19.1 0.6 0.00074 19 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1978) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:197661-197921 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~197661-197921 DUF3285 PF11688.3 g111985.t1 - 0.026 14.1 1.6 6.2 6.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:66851-67489 Augustus predicted protein sequence Tobacco scaffold2599_contigs=27~66851-67489 MSG PF02349.10 g56327.t1 - 0.026 14.4 2.3 0.037 14 1.6 1.3 1 0 0 1 1 1 0 Major surface glycoprotein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:455145-456454 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~455145-456454 YdfZ PF14001.1 g83562.t1 - 0.0021 18.2 0.2 2.5 8.4 0 2.3 2 0 0 2 2 2 2 YdfZ protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:94165-95273 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~94165-95273 Med2 PF11214.3 g43991.t1 - 0.34 10.9 3.2 0.59 10.1 2.2 1.3 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:113643-114341 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~113643-114341 zf-CCHC PF00098.18 g73843.t1 - 0.068 13.1 5.1 0.11 12.5 3.5 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:33526-33786 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~33526-33786 Phg_2220_C PF09524.5 g4250.t1 - 0.03 14.3 0.2 0.049 13.6 0.1 1.3 1 0 0 1 1 1 0 Conserved phage C-terminus (Phg_2220_C) | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:201315-201756 Augustus predicted protein sequence Tobacco scaffold255_contigs=10~201315-201756 Cwf_Cwc_15 PF04889.7 g125321.t1 - 0.03 14 0.9 0.038 13.7 0.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:26538-27263 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~26538-27263 DUF3728 PF12528.3 g83010.t1 - 0.0025 18.1 1 0.003 17.9 0.7 1.1 1 0 0 1 1 1 1 Prepilin peptidase dependent protein C (DUF3728) | Ref_seq=scaffold1776_contigs=16, transcript_loc=scaffold1776_contigs=16:456720-457151 Augustus predicted protein sequence Tobacco scaffold1776_contigs=16~456720-457151 bZIP_2 PF07716.10 g57581.t1 - 0.014 15.1 0 0.022 14.5 0 1.2 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:193806-194102 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~193806-194102 DUF2215 PF10225.4 g123148.t1 - 0.018 14.5 0.2 0.023 14.1 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:77572-78057 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~77572-78057 Toxin_67 PF15545.1 g108857.t1 - 0.12 12.2 0 0.19 11.6 0 1.2 1 0 0 1 1 1 0 Putative toxin 67 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:364551-365844 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~364551-365844 NAD_synthase PF02540.12 g39971.t1 - 0.051 12.4 0 0.059 12.2 0 1.2 1 0 0 1 1 1 0 NAD synthase | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:87286-87507 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~87286-87507 DUF384 PF04064.8 g123467.t1 - 0.15 11.6 0.1 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF384) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:29424-29750 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~29424-29750 Zw10 PF06248.8 g97769.t1 - 0.056 11.5 0.1 0.063 11.4 0 1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:124371-124712 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~124371-124712 Inositol_P PF00459.20 g76075.t1 - 0.16 11.2 0 0.37 10 0 1.6 1 1 1 2 2 2 0 Inositol monophosphatase family | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:136239-139466 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~136239-139466 Folliculin PF11704.3 g69103.t1 - 0.074 12.6 0.9 0.14 11.7 0.6 1.4 1 0 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:464884-467551 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~464884-467551 Peptidase_C98 PF15499.1 g59876.t1 - 0.12 11.6 0 0.16 11.2 0 1.1 1 0 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:54324-55294 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~54324-55294 Delta_lysin PF05372.6 g21285.t1 - 0.08 12.3 0 0.14 11.5 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:1670-5306 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~1670-5306 DUF3624 PF12292.3 g109158.t1 - 0.049 14 0.1 0.51 10.7 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:158218-159259 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~158218-159259 Virulence_fact PF13769.1 g20527.t1 - 0.15 11.9 0.8 0.23 11.3 0.6 1.2 1 0 0 1 1 1 0 Virulence factor | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:417388-417954 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~417388-417954 FYDLN_acid PF09538.5 g32313.t1 - 0.00034 21.1 17.1 0.00039 20.9 11.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold815_contigs=5, transcript_loc=scaffold815_contigs=5:98713-99868 Augustus predicted protein sequence Tobacco scaffold815_contigs=5~98713-99868 EBV-NA3 PF05009.7 g11715.t1 - 0.35 10 1.6 0.37 9.9 1.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:115306-115533 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~115306-115533 Ribosomal_S22 PF08136.6 g17251.t1 - 0.00049 20.2 0.1 0.0007 19.6 0.1 1.2 1 0 0 1 1 1 1 30S ribosomal protein subunit S22 family | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:264163-264363 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~264163-264363 DinI PF06183.8 g34495.t1 - 0.082 12.9 0.3 0.73 9.8 0 2.1 2 0 0 2 2 2 0 DinI-like family | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:146294-146936 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~146294-146936 VGCC_beta4Aa_N PF12052.3 g49712.t1 - 0.0076 16 0.2 0.0076 16 0.2 2 2 0 0 2 2 2 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:93385-94227 Augustus predicted protein sequence Tobacco scaffold1132_contigs=4~93385-94227 DUF4219 PF13961.1 g75220.t1 - 0.15 11.5 1.3 0.5 9.8 0.9 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:244739-245005 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~244739-245005 zf-CCHC_3 PF13917.1 g42917.t1 - 0.016 14.9 2.8 1.1 9 0.1 2.4 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:868089-868409 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~868089-868409 Psb28 PF03912.9 g31849.t1 - 0.067 13.1 0 0.073 13 0 1.1 1 0 0 1 1 1 0 Psb28 protein | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:68800-69024 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~68800-69024 zf-CCHC PF00098.18 g44243.t1 - 0.0094 15.8 0.8 0.02 14.8 0.6 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:88827-89447 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~88827-89447 Sdh_cyt PF01127.17 g55991.t1 - 0.059 13.1 0.2 0.059 13.1 0.1 2.3 2 1 1 3 3 3 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:311612-312163 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~311612-312163 RVP_2 PF08284.6 g93702.t1 - 0.0000007 29.2 0.4 0.00000095 28.8 0.3 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:390971-391399 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~390971-391399 BRK PF07533.11 g27660.t1 - 0.13 11.7 0 0.25 10.8 0 1.5 1 0 0 1 1 1 0 BRK domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:62104-62636 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~62104-62636 Rrf2 PF02082.15 g125145.t1 - 0.076 13.1 0 0.1 12.7 0 1.2 1 0 0 1 1 1 0 Transcriptional regulator | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:177902-178651 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~177902-178651 Malectin_like PF12819.2 g114991.t1 - 0.16 11 0.4 0.13 11.2 0.2 1.2 1 0 0 1 1 1 0 Carbohydrate-binding protein of the ER | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:168004-168771 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~168004-168771 IFT43 PF15305.1 g80376.t1 - 0.085 12.8 0.1 0.085 12.8 0.1 1.1 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:161045-161251 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~161045-161251 Rsm1 PF08600.5 g38844.t1 - 0.24 11.2 1 0.31 10.9 0.7 1.3 1 1 0 1 1 1 0 Rsm1-like | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:38595-39324 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~38595-39324 DUF751 PF05421.6 g114898.t1 - 0.043 14.1 0.5 0.37 11 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF751) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:303390-303662 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~303390-303662 HAUS-augmin3 PF14932.1 g75336.t1 - 0.0028 16.9 0.1 0.0039 16.4 0.1 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:186841-188086 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~186841-188086 B3 PF02362.16 g1319.t1 - 0.00000068 28.8 0.1 0.000001 28.2 0.1 1.3 1 0 0 1 1 1 1 B3 DNA binding domain | Ref_seq=scaffold173_contigs=3, transcript_loc=scaffold173_contigs=3:14078-14541 Augustus predicted protein sequence Tobacco scaffold173_contigs=3~14078-14541 FAM104 PF15434.1 g97335.t1 - 0.62 10.2 5.4 1.1 9.5 3.7 1.3 1 0 0 1 1 1 0 Family 104 | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:53829-54580 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~53829-54580 Collagen PF01391.13 g62063.t1 - 1 8.9 3.9 0.81 9.2 1 1.8 2 0 0 2 2 2 0 Collagen triple helix repeat (20 copies) | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:283560-286400 Augustus predicted protein sequence Tobacco scaffold1345_contigs=14~283560-286400 IFRD_C PF04836.7 g43180.t1 - 0.025 14.7 0 5.3 7.3 0 2.4 2 1 0 2 2 2 0 Interferon-related protein conserved region | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:51302-51745 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~51302-51745 DUF972 PF06156.8 g62548.t1 - 0.024 14.9 2.3 0.024 14.9 1.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:204768-205151 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~204768-205151 DUF884 PF05959.6 g128545.t1 - 0.1 11.8 0 0.12 11.7 0 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF884) | Ref_seq=scaffold2875_contigs=1, transcript_loc=scaffold2875_contigs=1:7479-7793 Augustus predicted protein sequence Tobacco scaffold2875_contigs=1~7479-7793 DBB PF14545.1 g57530.t1 - 0.012 15.1 0.6 0.017 14.6 0.4 1.2 1 0 0 1 1 1 0 Dof, BCAP, and BANK (DBB) motif, | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:41042-44439 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~41042-44439 DUF4219 PF13961.1 g89263.t1 - 0.00004 22.9 0.2 0.000058 22.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:170203-170427 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~170203-170427 CDK2AP PF09806.4 g10381.t1 - 0.051 13.8 0 0.054 13.7 0 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:221851-222318 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~221851-222318 Muted PF14942.1 g19235.t1 - 0.076 12.8 3.2 0.089 12.6 2.2 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:38653-38907 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~38653-38907 CHAD PF05235.9 g35676.t1 - 0.0037 16.8 0.1 0.0053 16.3 0 1.2 1 0 0 1 1 1 1 CHAD domain | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:68790-69365 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~68790-69365 Vps55 PF04133.9 g68277.t1 - 0.05 13.3 1 0.064 13 0.4 1.4 2 0 0 2 2 2 0 Vacuolar protein sorting 55 | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:88645-88974 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~88645-88974 HPPK PF01288.15 g11835.t1 - 0.07 12.8 0.1 0.15 11.8 0 1.5 2 0 0 2 2 2 0 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) | Ref_seq=scaffold414_contigs=3, transcript_loc=scaffold414_contigs=3:37528-38535 Augustus predicted protein sequence Tobacco scaffold414_contigs=3~37528-38535 ATHILA PF03078.10 g74522.t1 - 0.000037 22.4 0 0.0008 18.1 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:45443-46069 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~45443-46069 PPR_1 PF12854.2 g103330.t1 - 0.0013 18.1 1.1 0.015 14.7 0 2.5 2 1 0 2 2 2 1 PPR repeat | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:11015-12456 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~11015-12456 Sigma70_ner PF04546.8 g67355.t1 - 0.021 14.4 1.7 0.022 14.3 1.2 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:105285-105725 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~105285-105725 F-box PF00646.28 g400.t1 - 0.088 12.4 0 0.19 11.4 0 1.6 1 0 0 1 1 1 0 F-box domain | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:82470-82754 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~82470-82754 TnpB_IS66 PF05717.8 g82229.t1 - 0.0018 17.7 0 0.0021 17.4 0 1.1 1 0 0 1 1 1 1 IS66 Orf2 like protein | Ref_seq=scaffold1742_contigs=1, transcript_loc=scaffold1742_contigs=1:10241-10450 Augustus predicted protein sequence Tobacco scaffold1742_contigs=1~10241-10450 Peptidase_U32 PF01136.14 g57515.t1 - 0.11 11.3 0 0.15 10.9 0 1.1 1 0 0 1 1 1 0 Peptidase family U32 | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:8085-8396 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~8085-8396 ATHILA PF03078.10 g96671.t1 - 0.0000025 26.3 0 0.000003 26.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:112803-113183 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~112803-113183 ATHILA PF03078.10 g88566.t1 - 0.032 12.8 0 0.037 12.6 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:44143-44436 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~44143-44436 HXXSHH PF07586.6 g40735.t1 - 0.039 12.8 0.1 0.051 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:430288-433429 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~430288-433429 Fungal_trans_2 PF11951.3 g31171.t1 - 0.1 11.1 0 0.13 10.8 0 1.3 1 0 0 1 1 1 0 Fungal specific transcription factor domain | Ref_seq=scaffold786_contigs=8, transcript_loc=scaffold786_contigs=8:125592-128917 Augustus predicted protein sequence Tobacco scaffold786_contigs=8~125592-128917 HrpB7 PF09486.5 g53462.t1 - 0.033 14.1 0.6 0.053 13.4 0.4 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:384063-384449 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~384063-384449 GAS PF13851.1 g96200.t1 - 0.16 11.1 13.6 0.082 12 4.9 2 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:100485-101048 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~100485-101048 Periviscerokin PF08259.6 g3035.t1 - 1.7 8.9 3.9 11 6.5 0.1 2.9 2 0 0 2 2 2 0 Periviscerokinin family | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:178834-179585 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~178834-179585 UBN2 PF14223.1 g28491.t1 - 0.15 11.8 2 0.7 9.6 0.1 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:5800-6732 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~5800-6732 CCDC144C PF14915.1 g54169.t1 - 0.012 14.5 4.3 0.016 14.1 2.9 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:59603-62160 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~59603-62160 APC_CDC26 PF10471.4 g26387.t1 - 0.11 13.2 4 2.2 9 0.2 2.1 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:241144-241401 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~241144-241401 GP41 PF00517.12 g74623.t1 - 0.0056 16.2 0.5 0.0061 16.1 0.4 1.1 1 0 0 1 1 1 1 Retroviral envelope protein | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:13388-13726 Augustus predicted protein sequence Tobacco scaffold1561_contigs=2~13388-13726 DNA_photolyase PF00875.13 g57410.t1 - 0.016 14.9 0.7 0.033 13.9 0.2 1.8 2 1 0 2 2 2 0 DNA photolyase | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:115305-116069 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~115305-116069 APCDDC PF14921.1 g87167.t1 - 0.11 11.8 0 0.17 11.1 0 1.3 1 0 0 1 1 1 0 Adenomatosis polyposis coli down-regulated 1 | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:291281-292324 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~291281-292324 MAR_sialic_bdg PF10564.4 g105158.t1 - 0.025 14.3 0.2 0.033 13.9 0.1 1.2 1 0 0 1 1 1 0 Sialic-acid binding micronemal adhesive repeat | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:428998-429231 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~428998-429231 Peroxin-13_N PF04088.8 g110440.t1 - 0.014 15.3 0.1 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 Peroxin 13, N-terminal region | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:21862-22209 Augustus predicted protein sequence Tobacco scaffold2547_contigs=8~21862-22209 Umbravirus_LDM PF04817.7 g75778.t1 - 0.0018 17.5 0.2 1.8 7.6 0 2.3 2 0 0 2 2 2 2 Umbravirus long distance movement (LDM) family | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:7928-9352 Augustus predicted protein sequence Tobacco scaffold1596_contigs=1~7928-9352 Glyco_transf_17 PF04724.8 g52348.t1 - 0.12 11.3 0.2 0.14 11.1 0.1 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 17 | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:48655-49038 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~48655-49038 DUF2039 PF10217.4 g801.t1 - 0.13 12.2 4.7 1.1 9.2 3.2 2 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:11045-11332 Augustus predicted protein sequence Tobacco scaffold53_contigs=4~11045-11332 DUF4628 PF15429.1 g34323.t1 - 0.0036 16.7 1.4 0.0043 16.5 0.9 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4628) | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:9518-9784 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~9518-9784 DEC-1_N PF04625.8 g66630.t1 - 0.33 9.5 4.8 0.36 9.4 3.4 1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:301516-301806 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~301516-301806 Imm8 PF15560.1 g125961.t1 - 0.12 12 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 Immunity protein 8 | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:91881-93153 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~91881-93153 Trehalase PF01204.13 g83866.t1 - 0.0089 14.7 2.9 0.0096 14.5 2 1 1 0 0 1 1 1 1 Trehalase | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:83421-83822 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~83421-83822 COX8 PF02285.10 g71749.t1 - 0.099 12.1 0 0.15 11.6 0 1.2 1 0 0 1 1 1 0 Cytochrome oxidase c subunit VIII | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:36970-37188 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~36970-37188 RNA_pol_3_Rpc31 PF11705.3 g123525.t1 - 0.011 15.6 14.9 0.016 15.1 10.3 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:105174-108338 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~105174-108338 RNA_pol_Rpb5_C PF01191.14 g11107.t1 - 0.2 11.2 0.7 2.8 7.6 0 2 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:105588-105827 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~105588-105827 Phage_BR0599 PF09356.5 g112130.t1 - 0.028 14.5 0 1.3 9.2 0 2.2 2 0 0 2 2 2 0 Phage conserved hypothetical protein BR0599 | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:16871-21894 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~16871-21894 Transformer PF06495.6 g60677.t1 - 0.075 12.9 0.6 0.085 12.7 0.4 1 1 0 0 1 1 1 0 Fruit fly transformer protein | Ref_seq=scaffold1312_contigs=3, transcript_loc=scaffold1312_contigs=3:7877-8209 Augustus predicted protein sequence Tobacco scaffold1312_contigs=3~7877-8209 Prp31_C PF09785.4 g48145.t1 - 0.07 13.5 0.1 0.11 12.9 0 1.2 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:337182-337886 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~337182-337886 PQQ PF01011.16 g27661.t1 - 0.11 12.1 0 18 5 0 2.5 2 0 0 2 2 2 0 PQQ enzyme repeat | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:64916-66161 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~64916-66161 Rubis-subs-bind PF09273.6 g64215.t1 - 0.0092 15.8 0.2 0.018 14.9 0.1 1.4 1 0 0 1 1 1 1 Rubisco LSMT substrate-binding | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:143367-145315 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~143367-145315 Ribosomal_60s PF00428.14 g107541.t1 - 1.7 9 6.2 3.1 8.2 4.3 1.3 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:283916-284440 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~283916-284440 KASH PF10541.4 g77186.t1 - 0.05 13.4 0.3 0.15 11.9 0.1 1.8 2 0 0 2 2 2 0 Nuclear envelope localisation domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:76803-77042 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~76803-77042 DegS PF05384.6 g56288.t1 - 0.012 14.8 3.5 0.018 14.2 2.4 1.2 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:382324-384967 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~382324-384967 ATP_bind_1 PF03029.12 g81730.t1 - 0.019 14.5 0.4 0.024 14.1 0.3 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:59240-59973 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~59240-59973 Endotoxin_mid PF09131.5 g30053.t1 - 0.027 13.9 0 0.039 13.4 0 1.2 1 0 0 1 1 1 0 Bacillus thuringiensis delta-Endotoxin, middle domain | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:308091-309158 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~308091-309158 DUF3515 PF12028.3 g21336.t1 - 0.0034 16.6 0.8 0.021 14 0.1 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF3515) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:147615-147863 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~147615-147863 Lzipper-MIP1 PF14389.1 g24391.t1 - 0.11 12.6 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:100651-101289 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~100651-101289 RepA1_leader PF08048.7 g26187.t1 - 7.5 6.6 6.5 2.3 8.3 1.4 2 2 0 0 2 2 2 0 Tap RepA1 leader peptide | Ref_seq=scaffold712_contigs=6, transcript_loc=scaffold712_contigs=6:332-562 Augustus predicted protein sequence Tobacco scaffold712_contigs=6~332-562 Chol_subst-bind PF09129.6 g103909.t1 - 0.0043 16.2 0.1 0.89 8.6 0 2.1 2 0 0 2 2 2 2 Cholesterol oxidase, substrate-binding | Ref_seq=scaffold2320_contigs=12, transcript_loc=scaffold2320_contigs=12:11040-13821 Augustus predicted protein sequence Tobacco scaffold2320_contigs=12~11040-13821 Rad60-SLD PF11976.3 g48784.t1 - 0.055 13.1 0.1 2.2 8 0 2.9 3 0 0 3 3 3 0 Ubiquitin-2 like Rad60 SUMO-like | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:344098-344810 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~344098-344810 DUF4515 PF14988.1 g53265.t1 - 0.059 13 1 0.08 12.6 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:142507-142818 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~142507-142818 DUF3510 PF12022.3 g13604.t1 - 0.13 12.4 0.1 0.22 11.6 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) | Ref_seq=scaffold450_contigs=9, transcript_loc=scaffold450_contigs=9:139196-140509 Augustus predicted protein sequence Tobacco scaffold450_contigs=9~139196-140509 HutD PF05962.6 g29230.t1 - 0.066 12.9 0 0.072 12.8 0 1.2 1 0 0 1 1 1 0 HutD | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:27540-27758 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~27540-27758 DUF1156 PF06634.7 g55806.t1 - 0.028 14.1 0 0.041 13.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1156) | Ref_seq=scaffold1227_contigs=6, transcript_loc=scaffold1227_contigs=6:37347-38322 Augustus predicted protein sequence Tobacco scaffold1227_contigs=6~37347-38322 V-SNARE_C PF12352.3 g62240.t1 - 0.084 12.9 0 0.14 12.2 0 1.4 1 0 0 1 1 1 0 Snare region anchored in the vesicle membrane C-terminus | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:265887-266528 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~265887-266528 Baculo_LEF5_C PF11792.3 g20619.t1 - 0.026 13.9 0.1 0.038 13.3 0.1 1.2 1 0 0 1 1 1 0 Baculoviridae late expression factor 5 C-terminal domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:559656-559874 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~559656-559874 Astro_capsid PF03115.9 g86988.t1 - 0.18 10 0.5 0.2 9.9 0.4 1 1 0 0 1 1 1 0 Astrovirus capsid protein precursor | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:448280-448570 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~448280-448570 Myc_N PF01056.13 g125693.t1 - 0.017 14.2 0 0.017 14.2 0 1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:74379-74618 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~74379-74618 TMEM192 PF14802.1 g53626.t1 - 0.0078 15.1 0 0.0091 14.8 0 1.1 1 0 0 1 1 1 1 TMEM192 family | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:233679-233891 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~233679-233891 SpoIID PF08486.5 g130119.t1 - 0.12 12.6 0.1 0.67 10.2 0 1.9 1 1 1 2 2 2 0 Stage II sporulation protein | Ref_seq=scaffold3483_contigs=1, transcript_loc=scaffold3483_contigs=1:1804-2452 Augustus predicted protein sequence Tobacco scaffold3483_contigs=1~1804-2452 DUF2219 PF09982.4 g109922.t1 - 0.11 11.2 0 0.15 10.8 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold2518_contigs=8, transcript_loc=scaffold2518_contigs=8:3226-3729 Augustus predicted protein sequence Tobacco scaffold2518_contigs=8~3226-3729 Ribosomal_L15e PF00827.12 g48705.t1 - 0.00007 22.4 1.1 0.000089 22 0.7 1.2 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:176154-176672 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~176154-176672 DUF2888 PF11135.3 g5531.t1 - 0.023 14.4 0 0.029 14 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:217725-218342 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~217725-218342 FH2 PF02181.18 g47153.t1 - 0.017 14 0 0.02 13.8 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:127294-127587 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~127294-127587 UPF0158 PF03682.8 g68631.t1 - 0.033 13.7 1.5 0.033 13.7 1 2.4 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0158) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:655168-655812 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~655168-655812 EF-hand_like PF09279.6 g53639.t1 - 0.0089 16 1.6 0.013 15.5 0.5 1.7 1 1 1 2 2 2 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:8963-9475 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~8963-9475 DAZAP2 PF11029.3 g111880.t1 - 0.017 15.5 0.1 0.022 15.2 0.1 1.2 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:28760-29501 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~28760-29501 YdjO PF14169.1 g78714.t1 - 0.00035 19.9 0.1 0.00053 19.3 0.1 1.2 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:24850-25089 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~24850-25089 KN_motif PF12075.3 g47608.t1 - 0.014 15.1 4 6.3 6.6 0 3.3 3 0 0 3 3 3 0 KN motif | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:320592-320876 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~320592-320876 DUF3073 PF11273.3 g928.t1 - 0.065 13.7 2.8 8.6 6.9 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:146707-147414 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~146707-147414 BicD PF09730.4 g95117.t1 - 0.01 14.2 0.1 0.014 13.8 0.1 1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:151069-153007 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~151069-153007 PAT1 PF09770.4 g112596.t1 - 7.7 4.6 16 7.9 4.5 11.1 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:259127-259732 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~259127-259732 Pox_A_type_inc PF04508.7 g91595.t1 - 1.7 8.6 5 7.7 6.5 0.9 2.7 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:9143-12727 Augustus predicted protein sequence Tobacco scaffold1975_contigs=6~9143-12727 SWIM PF04434.12 g12422.t1 - 0.081 12.4 4.1 0.51 9.8 0 2.3 1 1 1 2 2 2 0 SWIM zinc finger | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:215473-216906 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~215473-216906 gag_pre-integrs PF13976.1 g76131.t1 - 0.00000059 29 0.6 0.00000059 29 0.4 1.8 2 0 0 2 2 2 1 GAG-pre-integrase domain | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:19789-21171 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~19789-21171 DUF788 PF05620.6 g32392.t1 - 0.014 15.2 0 0.017 14.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF788) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:43765-44169 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~43765-44169 Lactamase_B_4 PF13691.1 g80881.t1 - 0.011 15.1 0.2 0.026 13.9 0.2 1.7 1 1 0 1 1 1 0 tRNase Z endonuclease | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:236787-238179 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~236787-238179 PBP1_TM PF14812.1 g62510.t1 - 0.07 13.4 0.1 0.07 13.4 0.1 1.1 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:103801-104010 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~103801-104010 Daxx PF03344.10 g72150.t1 - 9.2 4.6 18.3 12 4.2 12.7 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:379623-380403 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~379623-380403 DUF2570 PF10828.3 g67713.t1 - 0.083 12.5 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:85953-86529 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~85953-86529 FH2 PF02181.18 g108792.t1 - 0.1 11.4 0 0.14 11 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:230559-232615 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~230559-232615 Vir_act_alpha_C PF10400.4 g59286.t1 - 0.039 14.3 1.7 0.69 10.3 0.1 2.1 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:107599-108012 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~107599-108012 HNH_2 PF13391.1 g24411.t1 - 0.047 13.4 0 0.059 13.1 0 1.2 1 0 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:144881-145114 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~144881-145114 FliO PF04347.8 g83661.t1 - 0.046 13.7 0 0.061 13.3 0 1.2 1 0 0 1 1 1 0 Flagellar biosynthesis protein, FliO | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:103826-104143 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~103826-104143 UBN2 PF14223.1 g98355.t1 - 0.0014 18.3 0 0.0021 17.8 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:258342-259783 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~258342-259783 Spidroin_MaSp PF11260.3 g30336.t1 - 0.092 12.8 3.3 11 6.1 0.1 3.2 1 1 1 3 3 3 0 Major ampullate spidroin 1 and 2 | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:343375-343746 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~343375-343746 DUF4632 PF15451.1 g97808.t1 - 0.021 14.7 0 10 6.1 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4632) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:209275-210438 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~209275-210438 DUF4611 PF15387.1 g102449.t1 - 0.036 14.2 2.5 2.5 8.3 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold2247_contigs=2, transcript_loc=scaffold2247_contigs=2:7863-8691 Augustus predicted protein sequence Tobacco scaffold2247_contigs=2~7863-8691 Transposase_28 PF04195.7 g115436.t1 - 0.0068 15.7 0 0.011 14.9 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:356693-358380 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~356693-358380 Candida_ALS PF05792.8 g28651.t1 - 0.16 12.1 2.1 0.44 10.7 0 2.1 2 0 0 2 2 2 0 Candida agglutinin-like (ALS) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:13350-13747 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~13350-13747 dDENN PF03455.14 g66519.t1 - 0.11 12.5 0.1 0.16 12 0.1 1.3 1 0 0 1 1 1 0 dDENN domain | Ref_seq=scaffold1441_contigs=1, transcript_loc=scaffold1441_contigs=1:17930-19260 Augustus predicted protein sequence Tobacco scaffold1441_contigs=1~17930-19260 TUDOR PF00567.19 g70631.t1 - 0.1 12.4 0 0.11 12.3 0 1.1 1 0 0 1 1 1 0 Tudor domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:702228-702709 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~702228-702709 DUF4219 PF13961.1 g30604.t1 - 0.000017 24.1 0.1 0.000024 23.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:15633-15860 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~15633-15860 Orn_Arg_deC_N PF02784.11 g112412.t1 - 0.1 11.7 0 0.12 11.5 0 1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:97091-98233 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~97091-98233 HALZ PF02183.13 g9331.t1 - 0.00064 19.3 6.4 0.18 11.5 1.1 2.5 2 1 0 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:179485-179817 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~179485-179817 Abhydrolase_2 PF02230.11 g82416.t1 - 0.18 11.2 0.4 3.1 7.1 0 2 1 1 1 2 2 2 0 Phospholipase/Carboxylesterase | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:454281-454610 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~454281-454610 DUF1676 PF07898.8 g115011.t1 - 0.051 13.8 0.1 0.057 13.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:206316-206516 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~206316-206516 DUF3643 PF12356.3 g126924.t1 - 0.045 13 0 0.071 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3643) | Ref_seq=scaffold2808_contigs=1, transcript_loc=scaffold2808_contigs=1:75423-76928 Augustus predicted protein sequence Tobacco scaffold2808_contigs=1~75423-76928 HALZ PF02183.13 g54724.t1 - 0.56 9.9 3.4 1.2 8.8 2.4 1.5 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:161732-163271 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~161732-163271 CDC48_2 PF02933.12 g36708.t1 - 0.16 11.6 0 0.26 10.9 0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 | Ref_seq=scaffold896_contigs=10, transcript_loc=scaffold896_contigs=10:140692-141917 Augustus predicted protein sequence Tobacco scaffold896_contigs=10~140692-141917 Takusan PF04822.8 g54720.t1 - 0.062 13 0.2 0.088 12.5 0.1 1.2 1 0 0 1 1 1 0 Takusan | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:156810-157220 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~156810-157220 DUF3760 PF12586.3 g119828.t1 - 0.039 13.7 0.9 0.079 12.8 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3760) | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:292526-292873 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~292526-292873 HSBP1 PF06825.7 g2048.t1 - 0.015 14.8 1.1 0.042 13.4 0.8 1.8 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:66591-66957 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~66591-66957 Tox-HNH-EHHH PF15657.1 g54048.t1 - 0.094 12.8 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxins | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:99421-99883 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~99421-99883 Phage-scaffold PF09306.5 g116489.t1 - 0.1 11.7 0.1 0.13 11.4 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage, scaffolding protein | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:194930-195268 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~194930-195268 Hemagglutinin PF00509.13 g76312.t1 - 0.0048 15 0.2 0.0063 14.7 0.1 1.1 1 0 0 1 1 1 1 Haemagglutinin | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:152281-152601 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~152281-152601 Trypan_PARP PF05887.6 g55161.t1 - 0.35 10.6 13.4 0.46 10.2 9.3 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:49013-49246 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~49013-49246 UPF0506 PF11703.3 g13894.t1 - 2.9 7.8 6.7 2.9 7.9 0.1 3.7 4 0 0 4 4 4 0 UPF0506 | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:328519-330758 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~328519-330758 DUF4575 PF15143.1 g56219.t1 - 0.042 13.5 0 0.042 13.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4575) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:264301-265413 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~264301-265413 DUF3405 PF11885.3 g88395.t1 - 0.062 11.5 0.1 0.065 11.4 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3405) | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:176917-177501 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~176917-177501 LSPR PF06049.7 g21721.t1 - 0.42 10.2 3.8 22 5 0.3 3.4 2 0 0 2 2 2 0 Coagulation Factor V LSPD Repeat | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:159757-163232 Augustus predicted protein sequence Tobacco scaffold598_contigs=2~159757-163232 SEO_C PF14577.1 g8558.t1 - 0.000014 24.6 0 0.000078 22.1 0 1.8 1 1 1 2 2 2 2 Sieve element occlusion C-terminus | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:197972-198354 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~197972-198354 Tol_Tol_Ttg2 PF05494.7 g28330.t1 - 0.13 11.7 0 0.68 9.4 0 1.9 1 1 1 2 2 2 0 Toluene tolerance, Ttg2 | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:77142-78048 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~77142-78048 DUF3089 PF11288.3 g124230.t1 - 0.035 13.2 0.1 0.042 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1673938-1674778 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1673938-1674778 DUF1439 PF07273.7 g73774.t1 - 0.031 13.9 0 0.058 13.1 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1439) | Ref_seq=scaffold1545_contigs=1, transcript_loc=scaffold1545_contigs=1:2920-3345 Augustus predicted protein sequence Tobacco scaffold1545_contigs=1~2920-3345 DUF3240 PF11582.3 g59608.t1 - 0.017 15 0.1 20 5.2 0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3240) | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:130517-130990 Augustus predicted protein sequence Tobacco scaffold1294_contigs=7~130517-130990 Stonin2_N PF12016.3 g2273.t1 - 0.01 14.9 0.5 0.012 14.8 0.3 1 1 0 0 1 1 1 0 Stonin 2 | Ref_seq=scaffold207_contigs=3, transcript_loc=scaffold207_contigs=3:21506-21781 Augustus predicted protein sequence Tobacco scaffold207_contigs=3~21506-21781 Myosin_tail_1 PF01576.14 g2217.t1 - 0.0022 15.8 4.3 0.0028 15.4 2.9 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:26891-28199 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~26891-28199 Seryl_tRNA_N PF02403.17 g128512.t1 - 0.043 13.8 0.6 0.11 12.5 0.4 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:12867-14518 Augustus predicted protein sequence Tobacco scaffold2873_contigs=1~12867-14518 Humanin PF15040.1 g113836.t1 - 0.13 11.4 1.1 0.29 10.4 0.8 1.6 1 0 0 1 1 1 0 Humanin family | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:564668-565787 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~564668-565787 MULE PF10551.4 g98669.t1 - 0.0024 17.9 0.2 0.0046 17 0.1 1.5 1 1 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold2165_contigs=3, transcript_loc=scaffold2165_contigs=3:39991-40272 Augustus predicted protein sequence Tobacco scaffold2165_contigs=3~39991-40272 TniB PF05621.6 g4432.t1 - 0.092 11.4 0.2 0.17 10.5 0 1.4 2 0 0 2 2 2 0 Bacterial TniB protein | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:217483-219446 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~217483-219446 ATHILA PF03078.10 g80923.t1 - 0.000021 23.3 0 0.000023 23.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:89230-89568 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~89230-89568 RVT_2 PF07727.9 g101088.t1 - 0.000031 23 0 0.000038 22.7 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:51260-51526 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~51260-51526 DUF3693 PF12472.3 g103935.t1 - 0.052 13.1 0 6.6 6.4 0 2.1 2 0 0 2 2 2 0 Phage related protein | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:43143-43580 Augustus predicted protein sequence Tobacco scaffold2321_contigs=13~43143-43580 WEMBL PF05701.6 g55917.t1 - 0.009 14.5 6.3 0.012 14.1 4.4 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:126460-127364 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~126460-127364 DUF4201 PF13870.1 g96078.t1 - 0.0018 17.7 0.4 0.002 17.5 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold2092_contigs=15, transcript_loc=scaffold2092_contigs=15:20451-20690 Augustus predicted protein sequence Tobacco scaffold2092_contigs=15~20451-20690 DUF755 PF05501.6 g102605.t1 - 0.017 15.1 6 0.029 14.4 4.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold2259_contigs=5, transcript_loc=scaffold2259_contigs=5:18868-19398 Augustus predicted protein sequence Tobacco scaffold2259_contigs=5~18868-19398 zf-CCHC PF00098.18 g102861.t1 - 0.000035 23.5 1 0.000052 22.9 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:50425-50691 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~50425-50691 Phospholip_A2_3 PF09056.6 g64646.t1 - 0.058 13.5 0.1 0.091 12.9 0.1 1.4 1 1 0 1 1 1 0 Prokaryotic phospholipase A2 | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:203996-204292 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~203996-204292 DUF912 PF06024.7 g48903.t1 - 0.0056 16.7 0 0.0068 16.4 0 1.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF912) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:591947-592270 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~591947-592270 YABBY PF04690.8 g69510.t1 - 0.013 15.7 0.1 0.016 15.4 0.1 1.1 1 0 0 1 1 1 0 YABBY protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:260843-261570 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~260843-261570 Ral PF11058.3 g33149.t1 - 0.12 11.7 0 0.16 11.3 0 1.3 1 0 0 1 1 1 0 Antirestriction protein Ral | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:554363-554910 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~554363-554910 zf-RVT PF13966.1 g20227.t1 - 0.000000003 37 0.1 4.8E-009 36.4 0.1 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:367735-368106 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~367735-368106 RinB PF06116.7 g42875.t1 - 1.1 8.9 4.6 2.2 7.9 3.2 1.5 1 0 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:781471-782101 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~781471-782101 DUF1644 PF07800.7 g4226.t1 - 0.027 14.3 0 0.027 14.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:76634-76927 Augustus predicted protein sequence Tobacco scaffold255_contigs=10~76634-76927 GTPase_Cys_C PF12631.2 g22810.t1 - 0.033 14.5 0.2 0.063 13.6 0.1 1.5 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:413221-414043 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~413221-414043 Elongin_A PF06881.6 g10317.t1 - 0.12 12.7 0.1 0.14 12.5 0 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription factor SIII (Elongin) subunit A | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:61170-61412 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~61170-61412 DUF3920 PF13058.1 g52370.t1 - 0.056 13.2 0 0.059 13.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3920) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:115654-115957 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~115654-115957 POM121 PF15229.1 g71454.t1 - 0.85 8.9 4 1.4 8.3 0.6 2 2 0 0 2 2 2 0 POM121 family | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:55145-56143 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~55145-56143 Herpes_UL49_1 PF03117.9 g116396.t1 - 0.074 12.1 0.3 0.067 12.2 0.2 1.1 1 0 0 1 1 1 0 UL49 family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:266393-266656 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~266393-266656 SEN1_N PF12726.2 g28963.t1 - 0.028 12.4 0 0.031 12.3 0 1 1 0 0 1 1 1 0 SEN1 N terminal | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:97532-98804 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~97532-98804 KilA-N PF04383.8 g46207.t1 - 0.047 13.2 0 0.07 12.7 0 1.2 1 0 0 1 1 1 0 KilA-N domain | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:76241-76796 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~76241-76796 ATHILA PF03078.10 g24918.t1 - 0.0037 15.9 0.1 0.023 13.2 0 1.8 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:11374-12023 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~11374-12023 QRPTase_N PF02749.11 g43870.t1 - 0.1 12.4 0 0.13 12.1 0 1.2 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:202854-203144 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~202854-203144 Oxidored_q1_C PF01010.14 g22254.t1 - 0.17 11.3 0.5 0.24 10.8 0.3 1.1 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:90793-93253 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~90793-93253 EzrA PF06160.7 g45587.t1 - 0.0048 15.1 1 0.0065 14.7 0.7 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:190159-190954 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~190159-190954 LRR19-TM PF15176.1 g21271.t1 - 0.043 13.4 0 10 5.8 0 2.1 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain | Ref_seq=scaffold592_contigs=8, transcript_loc=scaffold592_contigs=8:12443-13107 Augustus predicted protein sequence Tobacco scaffold592_contigs=8~12443-13107 Nucleoside_tran PF01733.13 g17146.t1 - 0.00018 20.7 1 0.00032 19.9 0.7 1.4 1 1 0 1 1 1 1 Nucleoside transporter | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:44138-45993 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~44138-45993 Retrotrans_gag PF03732.12 g65987.t1 - 0.000053 23.2 1.1 0.00013 21.9 0.8 1.7 1 1 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:85873-86355 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~85873-86355 NPV_P10 PF05531.7 g48995.t1 - 0.084 13.1 0.1 0.13 12.5 0 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:107002-107493 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~107002-107493 Tricho_coat PF05892.6 g99701.t1 - 0.076 12.2 0.1 0.085 12 0 1.1 1 0 0 1 1 1 0 Trichovirus coat protein | Ref_seq=scaffold2176_contigs=19, transcript_loc=scaffold2176_contigs=19:172830-173746 Augustus predicted protein sequence Tobacco scaffold2176_contigs=19~172830-173746 Bundlin PF05307.6 g121147.t1 - 0.15 11.9 0.3 0.17 11.7 0.2 1.2 1 0 0 1 1 1 0 Bundlin | Ref_seq=scaffold2732_contigs=1, transcript_loc=scaffold2732_contigs=1:49141-50133 Augustus predicted protein sequence Tobacco scaffold2732_contigs=1~49141-50133 Tropomyosin PF00261.15 g109597.t1 - 0.06 12.4 1.1 0.11 11.5 0.8 1.4 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:111562-112215 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~111562-112215 RRM_2 PF04059.7 g112006.t1 - 0.00083 19.3 0.1 1.4 8.9 0 2.2 1 1 1 2 2 2 2 RNA recognition motif 2 | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:30268-31620 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~30268-31620 Lipid_DES PF08557.5 g75763.t1 - 0.027 13.7 0 0.046 12.9 0 1.4 1 0 0 1 1 1 0 Sphingolipid Delta4-desaturase (DES) | Ref_seq=scaffold1593_contigs=11, transcript_loc=scaffold1593_contigs=11:31368-32239 Augustus predicted protein sequence Tobacco scaffold1593_contigs=11~31368-32239 zf-BED PF02892.10 g43109.t1 - 0.016 14.9 2.2 0.036 13.8 1.5 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:491872-492654 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~491872-492654 Cep57_MT_bd PF06657.8 g80703.t1 - 0.036 14 0.1 0.064 13.2 0.1 1.4 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:142856-143161 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~142856-143161 TFIIA PF03153.8 g67326.t1 - 3.8 7.2 8.9 4.6 7 6.2 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:50702-52457 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~50702-52457 Trypan_PARP PF05887.6 g42314.t1 - 2.7 7.7 20 4.3 7.1 13.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:25144-25970 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~25144-25970 Toxin_57 PF15535.1 g92829.t1 - 0.12 12.3 0 2.2 8.4 0 2.2 1 1 1 2 2 2 0 Putative toxin 57 | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:329019-329390 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~329019-329390 LuxE PF04443.7 g23133.t1 - 0.026 13.2 0 0.033 12.8 0 1.1 1 0 0 1 1 1 0 Acyl-protein synthetase, LuxE | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:228357-231331 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~228357-231331 DUF489 PF04356.7 g105309.t1 - 0.044 13.3 1.5 0.15 11.6 1.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF489) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:258582-259562 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~258582-259562 CsoSCA PF08936.5 g51946.t1 - 0.033 12.5 0 0.043 12.1 0 1 1 0 0 1 1 1 0 Carboxysome Shell Carbonic Anhydrase | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:21461-22031 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~21461-22031 Tegument_dsDNA PF12818.2 g32126.t1 - 0.15 10.8 0 0.22 10.3 0 1.2 1 0 0 1 1 1 0 dsDNA viral tegument protein | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:93758-94502 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~93758-94502 MitMem_reg PF13012.1 g75841.t1 - 0.039 14 1.3 0.051 13.6 0.9 1.3 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function | Ref_seq=scaffold1604_contigs=5, transcript_loc=scaffold1604_contigs=5:79459-79767 Augustus predicted protein sequence Tobacco scaffold1604_contigs=5~79459-79767 EF1G PF00647.14 g87097.t1 - 0.059 13 0.2 0.13 11.9 0.1 1.5 1 1 0 1 1 1 0 Elongation factor 1 gamma, conserved domain | Ref_seq=scaffold1867_contigs=2, transcript_loc=scaffold1867_contigs=2:3372-4297 Augustus predicted protein sequence Tobacco scaffold1867_contigs=2~3372-4297 HALZ PF02183.13 g51393.t1 - 0.0012 18.4 9.8 0.056 13.1 1.8 2.8 2 1 1 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:227937-228575 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~227937-228575 DUF35_N PF12172.3 g77916.t1 - 0.69 9.8 7.1 0.88 9.5 4.1 1.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:38385-38849 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~38385-38849 DUF4172 PF13776.1 g120578.t1 - 0.079 13 0.1 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:257212-257460 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~257212-257460 SAG PF04092.8 g72450.t1 - 0.11 12.9 0 0.17 12.2 0 1.3 1 0 0 1 1 1 0 SRS domain | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:7305-9041 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~7305-9041 T4SS PF07996.6 g71070.t1 - 0.0056 16.5 0.4 0.0091 15.8 0.3 1.3 1 0 0 1 1 1 1 Type IV secretion system proteins | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:586899-587300 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~586899-587300 Psu PF07455.6 g10325.t1 - 0.012 15.1 0.2 0.012 15.1 0.1 1 1 0 0 1 1 1 0 Phage polarity suppression protein (Psu) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:88296-88613 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~88296-88613 DUF2361 PF10153.4 g38932.t1 - 0.1 12.8 0 0.21 11.7 0 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2361) | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:300172-302448 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~300172-302448 DUF3136 PF11334.3 g104833.t1 - 0.093 12.1 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:100362-101726 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~100362-101726 PI3_PI4_kinase PF00454.22 g114648.t1 - 0.0047 16.4 0 0.0048 16.3 0 1.1 1 0 0 1 1 1 1 Phosphatidylinositol 3- and 4-kinase | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:151925-152244 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~151925-152244 ADIP PF11559.3 g96194.t1 - 0.079 12.8 0.1 0.12 12.2 0 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:66665-67222 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~66665-67222 DUF1399 PF07173.7 g1496.t1 - 0.017 15.3 1.7 0.029 14.6 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1399) | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:141412-142189 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~141412-142189 AXE1 PF05448.7 g21076.t1 - 0.14 10.6 0 0.18 10.2 0 1.1 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:413774-414199 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~413774-414199 Ribosomal_S27e PF01667.12 g123265.t1 - 0.12 11.9 0.1 0.24 10.9 0 1.6 1 1 0 1 1 1 0 Ribosomal protein S27 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:194053-194588 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~194053-194588 PAGK PF15284.1 g26198.t1 - 0.029 14.1 2 1.3 8.7 0.1 2.6 2 1 1 3 3 3 0 Phage-encoded virulence factor | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:15555-16388 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~15555-16388 TFIIH_BTF_p62_N PF08567.6 g53064.t1 - 0.081 12.5 1.2 1 9 0.2 2.3 1 1 1 2 2 2 0 TFIIH p62 subunit, N-terminal domain | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:710310-710537 Augustus predicted protein sequence Tobacco scaffold1183_contigs=24~710310-710537 DUF755 PF05501.6 g122474.t1 - 0.046 13.7 0 0.07 13.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:85716-87809 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~85716-87809 Etmic-2 PF06670.6 g23388.t1 - 0.1 11.2 0 0.14 10.8 0 1.2 1 0 0 1 1 1 0 Microneme protein Etmic-2 | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:25632-27333 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~25632-27333 GAPT PF11770.3 g75062.t1 - 0.086 12.5 0.8 0.1 12.2 0.6 1 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:35195-35413 Augustus predicted protein sequence Tobacco scaffold1566_contigs=4~35195-35413 ATHILA PF03078.10 g58830.t1 - 0.00055 18.6 0 0.00064 18.4 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:55111-55590 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~55111-55590 GAS PF13851.1 g41094.t1 - 0.036 13.2 19 0.065 12.4 7.7 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:660461-663799 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~660461-663799 Fzo_mitofusin PF04799.8 g90902.t1 - 0.015 14.7 5 0.02 14.3 3 1.5 1 1 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:113908-114489 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~113908-114489 DBD_Tnp_Mut PF03108.10 g339.t1 - 0.0000049 26 0.1 0.0000084 25.2 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold14_contigs=6, transcript_loc=scaffold14_contigs=6:61671-63864 Augustus predicted protein sequence Tobacco scaffold14_contigs=6~61671-63864 Phage_30_8 PF06019.6 g87815.t1 - 0.067 12.8 0.2 0.23 11.1 0 1.8 2 0 0 2 2 2 0 Phage GP30.8 protein | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:540894-541548 Augustus predicted protein sequence Tobacco scaffold1896_contigs=29~540894-541548 DUF2452 PF10504.4 g86728.t1 - 0.1 11.8 0.1 0.24 10.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2452) | Ref_seq=scaffold1859_contigs=11, transcript_loc=scaffold1859_contigs=11:20377-24683 Augustus predicted protein sequence Tobacco scaffold1859_contigs=11~20377-24683 RVT_3 PF13456.1 g23546.t1 - 0.0000067 25.7 0 0.000012 25 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:3090-3410 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~3090-3410 bZIP_2 PF07716.10 g117417.t1 - 0.052 13.3 0.4 0.091 12.5 0.3 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:123698-123919 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~123698-123919 eIF3g PF12353.3 g8778.t1 - 0.56 10.1 2.4 0.4 10.6 0.8 1.3 1 1 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:169014-169319 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~169014-169319 Gly-rich_Ago1 PF12764.2 g12528.t1 - 4 8.1 7 1.3 9.7 1.3 2.3 2 1 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:94307-94801 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~94307-94801 Neural_ProG_Cyt PF06567.6 g73192.t1 - 0.1 12.7 0.4 0.15 12.1 0.2 1.3 1 1 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:25170-25436 Augustus predicted protein sequence Tobacco scaffold1532_contigs=5~25170-25436 EFP_N PF08207.7 g48780.t1 - 0.14 12 0 4.2 7.3 0 2.2 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:334572-337251 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~334572-337251 DUF3289 PF11692.3 g15299.t1 - 0.018 14.3 0.1 0.021 14 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3289) | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:94311-94866 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~94311-94866 Peptidase_M44 PF03410.8 g23595.t1 - 0.032 12.4 0 0.037 12.2 0 1 1 0 0 1 1 1 0 Protein G1 | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:147590-147835 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~147590-147835 DUF3397 PF11877.3 g31348.t1 - 0.21 11.6 3.3 0.44 10.5 2.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:10445-10906 Augustus predicted protein sequence Tobacco scaffold794_contigs=4~10445-10906 DUF2615 PF11027.3 g56728.t1 - 0.14 12.1 0 0.16 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:733822-734100 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~733822-734100 DUF273 PF03314.9 g25599.t1 - 0.086 12.1 0.1 0.094 12 0.1 1 1 0 0 1 1 1 0 Protein of unknown function, DUF273 | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:75217-77199 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~75217-77199 CENP-Q PF13094.1 g113358.t1 - 0.00029 20.9 0.3 0.00045 20.2 0.2 1.3 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:37722-38776 Augustus predicted protein sequence Tobacco scaffold2628_contigs=7~37722-38776 DUF948 PF06103.6 g90295.t1 - 0.0057 16.4 2 0.062 13.1 1.4 2.2 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:524253-524995 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~524253-524995 DBD_Tnp_Mut PF03108.10 g110140.t1 - 1.2E-009 37.5 0.2 2.4E-009 36.6 0.1 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:55740-58562 Augustus predicted protein sequence Tobacco scaffold2526_contigs=3~55740-58562 DUF3128 PF11326.3 g93381.t1 - 0.11 12.6 0.1 0.15 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3128) | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:171701-172035 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~171701-172035 DUF4510 PF14971.1 g51724.t1 - 0.0046 17.1 0.5 0.0056 16.8 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4510) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:72818-73123 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~72818-73123 DUF572 PF04502.8 g82205.t1 - 1.5 7.9 4.8 1.5 7.9 3.3 1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:71970-72293 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~71970-72293 MtrG PF04210.8 g58832.t1 - 0.54 9.9 2.6 1.8 8.3 0.1 2.9 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:55983-59430 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~55983-59430 rve_2 PF13333.1 g103264.t1 - 0.13 12.3 0.2 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:230464-230988 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~230464-230988 Med18 PF09637.5 g67375.t1 - 0.025 14.1 0.4 0.027 13.9 0.3 1 1 0 0 1 1 1 0 Med18 protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:167135-168457 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~167135-168457 zf-CCHC PF00098.18 g44638.t1 - 0.0094 15.8 0.2 0.013 15.3 0.1 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:46044-46304 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~46044-46304 DUF3396 PF11876.3 g42525.t1 - 0.042 12.9 3.1 3.4 6.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3396) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:55816-56949 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~55816-56949 Blo-t-5 PF11642.3 g28825.t1 - 0.063 13 0.5 6 6.6 0 2.3 2 0 0 2 2 2 0 Mite allergen Blo t 5 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:368404-369346 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~368404-369346 DUF2525 PF10733.4 g74845.t1 - 0.26 11.1 1.5 11 5.9 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2525) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:192611-192952 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~192611-192952 UBN2 PF14223.1 g82409.t1 - 0.12 12.2 0.1 0.16 11.7 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:437948-438267 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~437948-438267 CorA PF01544.13 g76023.t1 - 0.0014 17.7 0.8 0.0015 17.6 0.5 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:32831-33663 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~32831-33663 DUF4164 PF13747.1 g15255.t1 - 0.014 15.5 1.9 0.014 15.5 1.3 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:10886-11832 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~10886-11832 Pentapeptide_3 PF13576.1 g54385.t1 - 0.11 12.3 1 0.16 11.8 0.7 1.3 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:210859-211677 Augustus predicted protein sequence Tobacco scaffold1207_contigs=28~210859-211677 DUF1091 PF06477.8 g39539.t1 - 0.12 12.8 0 0.12 12.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:29293-29529 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~29293-29529 NYD-SP28_assoc PF14775.1 g58483.t1 - 0.1 12.2 1 0.17 11.6 0.7 1.3 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:136297-136668 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~136297-136668 Herpes_ICP4_N PF03584.10 g6561.t1 - 0.11 12 0 0.13 11.7 0 1.1 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein N-terminal region | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:49758-50736 Augustus predicted protein sequence Tobacco scaffold300_contigs=5~49758-50736 Mpp10 PF04006.7 g80751.t1 - 3.8 5.7 18.8 4.7 5.4 13 1.1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:232546-232938 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~232546-232938 AAT PF03417.11 g121279.t1 - 0.026 13.9 1.7 0.035 13.5 1.2 1.1 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:575529-575939 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~575529-575939 Xpo1 PF08389.7 g120591.t1 - 0.00013 21.8 0.5 0.0002 21.2 0.3 1.3 1 0 0 1 1 1 1 Exportin 1-like protein | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:277901-278550 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~277901-278550 DUF2360 PF10152.4 g16190.t1 - 5.5 7.2 7.4 11 6.2 5.1 1.5 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:54601-54975 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~54601-54975 DUF2893 PF11459.3 g93640.t1 - 0.031 14 0.1 0.054 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknwon function (DUF2893) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:261494-262197 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~261494-262197 SWIM PF04434.12 g35816.t1 - 0.000022 23.8 0.3 0.000038 23 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:494354-495364 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~494354-495364 CENP-Q PF13094.1 g119452.t1 - 0.0018 18.3 0 0.0022 18 0 1.1 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:82209-83144 Augustus predicted protein sequence Tobacco scaffold2712_contigs=5~82209-83144 NiFe_hyd_SSU_C PF14720.1 g116176.t1 - 0.09 12.8 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 NiFe/NiFeSe hydrogenase small subunit C-terminal | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:43542-43814 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~43542-43814 FTA2 PF13095.1 g17061.t1 - 0.093 12.3 0.1 0.11 12 0.1 1.1 1 0 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:384827-385240 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~384827-385240 Trypan_PARP PF05887.6 g32112.t1 - 6.6 6.5 28.8 0.73 9.6 16.8 1.7 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:61431-64291 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~61431-64291 Vir_act_alpha_C PF10400.4 g107448.t1 - 0.071 13.4 0.2 0.071 13.4 0.1 2.3 1 1 1 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:3719-4117 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~3719-4117 DUF2300 PF10062.4 g93045.t1 - 0.12 12.1 0.2 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:565671-566385 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~565671-566385 FAA_hydrolase PF01557.13 g43733.t1 - 0.028 13.8 0.3 0.62 9.4 0.2 2.3 1 1 1 2 2 2 0 Fumarylacetoacetate (FAA) hydrolase family | Ref_seq=scaffold1027_contigs=5, transcript_loc=scaffold1027_contigs=5:3358-6902 Augustus predicted protein sequence Tobacco scaffold1027_contigs=5~3358-6902 DUF4501 PF14946.1 g64857.t1 - 0.071 12.5 0.2 0.071 12.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:205132-205335 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~205132-205335 DUF3106 PF11304.3 g115709.t1 - 0.023 15 2 0.025 14.9 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:99627-99857 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~99627-99857 Toxin_11 PF07473.6 g124739.t1 - 1.1 9.2 5.1 4.2 7.3 1.3 2.5 2 0 0 2 2 2 0 Spasmodic peptide gm9a | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:40657-40887 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~40657-40887 ATHILA PF03078.10 g85213.t1 - 0.0000089 24.5 0 0.00079 18.1 0 2.2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:447543-448219 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~447543-448219 ATHILA PF03078.10 g69026.t1 - 0.011 14.3 0 0.013 14.1 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:316924-317294 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~316924-317294 zf-CCHC PF00098.18 g89289.t1 - 0.00022 21 4.2 0.00037 20.2 2.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:232138-232644 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~232138-232644 Staphylokinase PF02821.11 g92193.t1 - 0.071 12.9 0.1 0.65 9.8 0.2 2 1 1 1 2 2 2 0 Staphylokinase/Streptokinase family | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:184842-185648 Augustus predicted protein sequence Tobacco scaffold1984_contigs=7~184842-185648 Tim54 PF11711.3 g64892.t1 - 0.0075 14.9 0 0.0087 14.6 0 1.1 1 0 0 1 1 1 1 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:343229-343525 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~343229-343525 UBN2 PF14223.1 g93345.t1 - 0.0043 16.8 0.4 0.1 12.4 0.1 2.3 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:103564-104147 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~103564-104147 CD24 PF14984.1 g36144.t1 - 0.0047 16.7 2.5 0.0088 15.8 1.8 1.5 1 0 0 1 1 1 1 CD24 protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:362311-362541 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~362311-362541 MIP-T3 PF10243.4 g6571.t1 - 0.053 12 2.3 0.061 11.7 1.6 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:63210-63941 Augustus predicted protein sequence Tobacco scaffold300_contigs=5~63210-63941 MitMem_reg PF13012.1 g15483.t1 - 0.066 13.2 0 0.09 12.8 0 1.2 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:449700-450092 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~449700-450092 DBD_Tnp_Mut PF03108.10 g69754.t1 - 0.00063 19.2 0.3 0.00095 18.6 0.2 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:57299-57943 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~57299-57943 DUF336 PF03928.9 g53604.t1 - 0.012 15.4 0 0.023 14.4 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF336) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:191981-192702 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~191981-192702 TBCA PF02970.11 g3286.t1 - 0.34 11 7.2 0.67 10 5 1.5 1 0 0 1 1 1 0 Tubulin binding cofactor A | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:182453-182869 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~182453-182869 DUF2205 PF10224.4 g56492.t1 - 0.063 12.8 0.1 0.088 12.3 0 1.2 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:255532-255967 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~255532-255967 SMN PF06003.7 g3223.t1 - 0.06 12.4 2 0.069 12.2 1.4 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:46309-46615 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~46309-46615 UBN2 PF14223.1 g24870.t1 - 0.0028 17.4 3.2 0.012 15.4 0.1 2.1 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold680_contigs=7, transcript_loc=scaffold680_contigs=7:19595-20277 Augustus predicted protein sequence Tobacco scaffold680_contigs=7~19595-20277 Sda PF08970.5 g110379.t1 - 0.24 10.9 4.4 7.9 6 0.2 2.4 2 0 0 2 2 2 0 Sporulation inhibitor A | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:13077-14669 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~13077-14669 IstB_IS21 PF01695.12 g66769.t1 - 0.032 13.6 0 0.052 12.9 0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:673487-674677 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~673487-674677 FAR1 PF03101.10 g117772.t1 - 0.00005 23.7 0.5 0.0065 16.9 0.1 2.1 2 0 0 2 2 2 2 FAR1 DNA-binding domain | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:68663-68983 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~68663-68983 TPR_MLP1_2 PF07926.7 g111794.t1 - 0.00087 19 7.6 0.19 11.4 0.6 2.3 2 0 0 2 2 2 2 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:231687-232501 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~231687-232501 Herpes_V23 PF01802.12 g63490.t1 - 0.13 11.2 1.6 0.14 11.1 1.1 1.1 1 0 0 1 1 1 0 Herpesvirus VP23 like capsid protein | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:44430-45067 Augustus predicted protein sequence Tobacco scaffold1375_contigs=5~44430-45067 bZIP_1 PF00170.16 g101853.t1 - 0.000000033 33.3 14.5 0.000008 25.7 2.5 2.3 2 1 0 2 2 2 2 bZIP transcription factor | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:26976-27839 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~26976-27839 DBD_Tnp_Mut PF03108.10 g19587.t1 - 0.017 14.6 2.9 0.017 14.6 2 2.2 2 0 0 2 2 2 0 MuDR family transposase | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:72940-73308 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~72940-73308 ATHILA PF03078.10 g13163.t1 - 0.00076 18.1 0 0.00095 17.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:282859-283254 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~282859-283254 DUF4283 PF14111.1 g109018.t1 - 0.000000091 31.3 0 0.00000011 31.1 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2470_contigs=4, transcript_loc=scaffold2470_contigs=4:5315-6262 Augustus predicted protein sequence Tobacco scaffold2470_contigs=4~5315-6262 DUF842 PF05811.8 g116262.t1 - 0.45 9.9 6.3 2.5 7.5 0.3 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:302137-302688 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~302137-302688 EF-hand_7 PF13499.1 g91376.t1 - 0.036 14.2 0 0.045 13.8 0 1.2 1 0 0 1 1 1 0 EF-hand domain pair | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:46256-46462 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~46256-46462 APG17 PF04108.7 g80723.t1 - 0.014 14.2 1.1 0.016 13.9 0.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:182148-182573 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~182148-182573 Ion_trans PF00520.26 g63615.t1 - 0.0034 16.6 0.4 0.0034 16.6 0.2 1.4 2 0 0 2 2 2 1 Ion transport protein | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:101724-102227 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~101724-102227 MAGP PF05507.6 g114379.t1 - 0.0015 18.3 0.3 1.2 8.9 0 2.1 1 1 1 2 2 2 2 Microfibril-associated glycoprotein (MAGP) | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:55648-56832 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~55648-56832 XhlA PF10779.4 g68402.t1 - 0.59 10 6.5 0.3 11 3.3 1.5 1 1 1 2 2 2 0 Haemolysin XhlA | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:47131-47406 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~47131-47406 DUF3317 PF11779.3 g52675.t1 - 3.5 7.1 6.8 1.4 8.3 0.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3317) | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:600593-601015 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~600593-601015 NAM-associated PF14303.1 g76271.t1 - 0.0000046 27 5.3 0.0000046 27 3.6 1.3 1 1 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:59402-59815 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~59402-59815 Nop14 PF04147.7 g87411.t1 - 0.036 12 9.7 0.039 11.9 6.7 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:23612-24037 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~23612-24037 PhnH PF05845.7 g116715.t1 - 0.044 13.2 0 0.22 10.9 0 1.8 1 1 1 2 2 2 0 Bacterial phosphonate metabolism protein (PhnH) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:3650-4093 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~3650-4093 DUF2090 PF09863.4 g58815.t1 - 0.025 13.4 0.5 0.028 13.2 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2090) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:29673-30035 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~29673-30035 DUF4407 PF14362.1 g125670.t1 - 0.039 12.9 0.2 0.042 12.8 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:34646-34963 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~34646-34963 ATHILA PF03078.10 g31832.t1 - 0.00064 18.4 0 0.00064 18.4 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:17465-17749 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~17465-17749 DUF904 PF06005.7 g69308.t1 - 0.054 13.7 0 0.079 13.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:91687-92013 Augustus predicted protein sequence Tobacco scaffold1485_contigs=2~91687-92013 CENP-U PF13097.1 g126994.t1 - 0.2 11.5 3.3 0.27 11.1 2.3 1.2 1 0 0 1 1 1 0 CENP-A nucleosome associated complex (NAC) subunit | Ref_seq=scaffold2811_contigs=1, transcript_loc=scaffold2811_contigs=1:5148-5630 Augustus predicted protein sequence Tobacco scaffold2811_contigs=1~5148-5630 DUF3893 PF13032.1 g86641.t1 - 0.026 14.6 0.1 0.03 14.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:88704-88958 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~88704-88958 Flu_M1 PF00598.14 g89851.t1 - 0.062 12.6 0.7 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Influenza Matrix protein (M1) | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:229588-230268 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~229588-230268 UBN2 PF14223.1 g114660.t1 - 0.032 14 0.6 0.25 11.1 0 1.9 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:166101-166313 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~166101-166313 Agouti PF05039.7 g45554.t1 - 1.6 9.1 3.6 0.75 10.1 0.6 1.7 1 1 1 2 2 2 0 Agouti protein | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:139528-140268 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~139528-140268 Fb_signal PF08341.6 g45429.t1 - 0.13 12.3 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Fibronectin-binding protein signal sequence | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:424790-426767 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~424790-426767 AvrB_AvrC PF05394.6 g91034.t1 - 0.01 14.8 0.4 0.011 14.7 0.3 1 1 0 0 1 1 1 0 Avirulence protein | Ref_seq=scaffold1969_contigs=2, transcript_loc=scaffold1969_contigs=2:12253-12501 Augustus predicted protein sequence Tobacco scaffold1969_contigs=2~12253-12501 CBP4 PF07960.6 g103572.t1 - 0.081 12.5 0.2 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 CBP4 | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:63471-63851 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~63471-63851 IFP_35_N PF07334.8 g18519.t1 - 0.0041 17 5.9 0.4 10.6 1.1 2.6 2 0 0 2 2 2 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:151545-152354 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~151545-152354 Tim44 PF04280.10 g25639.t1 - 0.022 14.7 1.4 0.026 14.4 1 1 1 0 0 1 1 1 0 Tim44-like domain | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:161219-161910 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~161219-161910 Muted PF14942.1 g44626.t1 - 0.31 10.8 1.9 0.34 10.7 1.3 1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:14449-14679 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~14449-14679 Glu_syn_central PF04898.9 g54768.t1 - 0.012 14.9 0.3 0.013 14.8 0.2 1.1 1 0 0 1 1 1 0 Glutamate synthase central domain | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:280312-280825 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~280312-280825 Myc_N PF01056.13 g64427.t1 - 0.29 10.2 5.5 0.28 10.2 3.8 1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:35848-36162 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~35848-36162 VWA_3 PF13768.1 g84071.t1 - 0.056 13.1 0 0.079 12.6 0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:569058-569519 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~569058-569519 IFP_35_N PF07334.8 g99225.t1 - 0.14 12.1 0.7 0.14 12.1 0.5 1.7 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:83589-83864 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~83589-83864 CLU_N PF15044.1 g75286.t1 - 0.6 10.3 6.2 16 5.7 0 3.3 1 1 2 3 3 3 0 Mitochondrial function, CLU-N-term | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:90316-91825 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~90316-91825 NYD-SP28_assoc PF14775.1 g12059.t1 - 0.48 10.1 3 0.37 10.5 1.1 1.5 2 0 0 2 2 2 0 Sperm tail C-terminal domain | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:332832-333137 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~332832-333137 Seryl_tRNA_N PF02403.17 g100145.t1 - 0.011 15.6 3.7 0.011 15.6 2.6 1.6 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:160514-161113 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~160514-161113 TAF4 PF05236.9 g112235.t1 - 0.32 10.2 2.5 0.43 9.8 1.7 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:45712-46332 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~45712-46332 UPF0547 PF10571.4 g101221.t1 - 0.27 10.9 0.1 0.27 10.9 0.1 2.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:44671-47901 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~44671-47901 Sigma54_AID PF00309.15 g10413.t1 - 0.1 12 0.1 0.5 9.8 0 2.2 3 0 0 3 3 3 0 Sigma-54 factor, Activator interacting domain (AID) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:314509-314923 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~314509-314923 CHZ PF09649.5 g63130.t1 - 0.15 11.3 2 0.28 10.4 1.4 1.5 1 0 0 1 1 1 0 Histone chaperone domain CHZ | Ref_seq=scaffold1368_contigs=16, transcript_loc=scaffold1368_contigs=16:35870-36106 Augustus predicted protein sequence Tobacco scaffold1368_contigs=16~35870-36106 DUF2730 PF10805.3 g44929.t1 - 0.00019 21 0.9 0.00029 20.5 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:29173-30734 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~29173-30734 TIL PF01826.12 g108637.t1 - 0.014 15.5 4.4 0.017 15.1 3 1.2 1 0 0 1 1 1 0 Trypsin Inhibitor like cysteine rich domain | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:1279885-1280133 Augustus predicted protein sequence Tobacco scaffold2444_contigs=49~1279885-1280133 Arfaptin PF06456.8 g36669.t1 - 0.15 11.4 0.1 0.21 10.8 0.1 1.2 1 0 0 1 1 1 0 Arfaptin-like domain | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:213623-214054 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~213623-214054 DUF4208 PF13907.1 g70359.t1 - 0.039 14.1 0.6 0.047 13.9 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:360379-360585 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~360379-360585 Reticulon PF02453.12 g85043.t1 - 0.1 12.2 0 0.11 12 0 1.2 1 0 0 1 1 1 0 Reticulon | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:85993-86825 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~85993-86825 DUF2158 PF09926.4 g97774.t1 - 0.064 12.6 0.9 1.1 8.7 0 2.1 2 0 0 2 2 2 0 Uncharacterized small protein (DUF2158) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:130317-130607 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~130317-130607 IP_trans PF02121.13 g18431.t1 - 0.11 11.6 0.2 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 Phosphatidylinositol transfer protein | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:68081-68593 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~68081-68593 Lzipper-MIP1 PF14389.1 g71755.t1 - 0.076 13.1 0 0.11 12.6 0 1.1 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:43610-43864 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~43610-43864 CENP-B_N PF04218.8 g46361.t1 - 0.0012 18.2 0.2 0.0018 17.6 0.1 1.3 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:204245-205072 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~204245-205072 DUF4518 PF15008.1 g123513.t1 - 0.0088 15.1 0.4 0.01 14.8 0.3 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4518) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:92592-92897 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~92592-92897 RAI1 PF08652.6 g26003.t1 - 0.089 12.5 2.6 6.3 6.6 0 2.4 2 0 0 2 2 2 0 RAI1 like PD-(D/E)XK nuclease | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:255079-256767 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~255079-256767 rve PF00665.21 g115003.t1 - 0.03 14.4 0.1 0.039 14 0.1 1.4 1 1 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:197298-197616 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~197298-197616 NRDD PF13597.1 g126252.t1 - 0.097 10.7 0 0.1 10.6 0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:45281-48070 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~45281-48070 PBP1_TM PF14812.1 g16578.t1 - 5.7 7.3 7 8 6.8 4.9 1.6 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold522_contigs=18, transcript_loc=scaffold522_contigs=18:88122-88424 Augustus predicted protein sequence Tobacco scaffold522_contigs=18~88122-88424 CCDC155 PF14662.1 g92327.t1 - 0.0026 17.4 2.6 0.0032 17 1.8 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:286782-287114 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~286782-287114 BCAS2 PF05700.6 g119640.t1 - 0.0083 15.6 1.5 0.0099 15.3 1 1.1 1 0 0 1 1 1 1 Breast carcinoma amplified sequence 2 (BCAS2) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:128983-129518 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~128983-129518 H-kinase_dim PF02895.9 g63086.t1 - 0.012 15.8 0.4 0.017 15.4 0.3 1.2 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold1366_contigs=6, transcript_loc=scaffold1366_contigs=6:75969-76250 Augustus predicted protein sequence Tobacco scaffold1366_contigs=6~75969-76250 Internalin_N PF12354.3 g19040.t1 - 0.12 12 0.4 0.22 11.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:159199-159549 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~159199-159549 YIEGIA PF14045.1 g1785.t1 - 0.11 11.1 0 0.11 11.1 0 1 1 0 0 1 1 1 0 YIEGIA protein | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:153511-153729 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~153511-153729 zf-CCHC PF00098.18 g17702.t1 - 0.00045 20 0.2 0.0011 18.8 0.2 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:6962-8014 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~6962-8014 Nop14 PF04147.7 g114924.t1 - 0.076 10.9 14.9 0.074 10.9 10.3 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:365405-365788 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~365405-365788 DUF3579 PF12112.3 g125076.t1 - 0.016 15 0 0.018 14.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3579) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:62117-62744 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~62117-62744 NOA36 PF06524.7 g70524.t1 - 0.084 12.1 6.6 0.082 12.1 4.6 1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:230744-230983 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~230744-230983 PROL5-SMR PF15621.1 g36128.t1 - 0.83 10.1 4.1 1.1 9.7 2.9 1.2 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:324609-324845 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~324609-324845 zf-C2H2 PF00096.21 g46145.t1 - 0.044 14.1 0.3 0.15 12.4 0.2 2 1 1 0 1 1 1 0 Zinc finger, C2H2 type | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:236724-237422 Augustus predicted protein sequence Tobacco scaffold1055_contigs=9~236724-237422 FH2 PF02181.18 g16888.t1 - 0.0000023 26.7 0 0.017 14 0 2 2 0 0 2 2 2 2 Formin Homology 2 Domain | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:85744-86496 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~85744-86496 DUF2149 PF09919.4 g84890.t1 - 0.039 14 0.2 0.05 13.6 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:32959-33860 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~32959-33860 DUF2752 PF10825.3 g120317.t1 - 0.46 10.5 7.3 14 5.8 0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2752) | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:201227-201934 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~201227-201934 ATHILA PF03078.10 g50299.t1 - 0.043 12.4 0 0.051 12.1 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:314614-314997 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~314614-314997 ATHILA PF03078.10 g385.t1 - 0.0000011 27.5 0 0.0000013 27.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:60192-60977 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~60192-60977 DUF3959 PF13105.1 g62418.t1 - 8.5 5.6 6.3 14 4.9 0.9 2 1 1 1 2 2 2 0 Protein of unknown function (DUF3959) | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:185185-187029 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~185185-187029 Tmemb_cc2 PF10267.4 g23420.t1 - 0.074 11.6 0 0.079 11.5 0 1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:90192-90681 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~90192-90681 Prefoldin_3 PF13758.1 g52447.t1 - 0.096 12.4 0 0.13 12 0 1.2 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:279401-281526 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~279401-281526 FH2 PF02181.18 g114569.t1 - 0.079 11.8 0 0.091 11.6 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:51695-52141 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~51695-52141 P22_AR_N PF10547.4 g24200.t1 - 0.052 13.3 0 0.092 12.5 0 1.4 1 0 0 1 1 1 0 P22_AR N-terminal domain | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:148417-148950 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~148417-148950 DUF1985 PF09331.6 g105257.t1 - 0.0000001 31.8 0 0.00000019 31 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:97183-98786 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~97183-98786 SH3BGR PF04908.10 g92979.t1 - 0.0051 16.7 0.2 0.0059 16.5 0.1 1.1 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:397555-397938 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~397555-397938 ATHILA PF03078.10 g29880.t1 - 0.0000048 25.4 0 0.0000049 25.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:337144-337467 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~337144-337467 YdjO PF14169.1 g3485.t1 - 0.00048 19.5 0.9 0.00091 18.6 0.6 1.4 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:150481-151056 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~150481-151056 DUF1985 PF09331.6 g35375.t1 - 0.0000013 28.2 0 0.0000019 27.7 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:69613-70292 Augustus predicted protein sequence Tobacco scaffold871_contigs=9~69613-70292 TAFA PF12020.3 g31955.t1 - 0.037 14.1 0 0.058 13.5 0 1.3 1 1 0 1 1 1 0 TAFA family | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:47692-48525 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~47692-48525 FAM220 PF15487.1 g89799.t1 - 0.06 12.7 0.2 0.068 12.5 0.1 1.2 1 0 0 1 1 1 0 FAM220 family | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:46142-46627 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~46142-46627 DUF2562 PF10814.3 g113463.t1 - 0.065 13.1 0 0.081 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2562) | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:73832-76469 Augustus predicted protein sequence Tobacco scaffold2632_contigs=8~73832-76469 FANCI_HD1 PF14679.1 g80309.t1 - 0.048 13.3 0 0.07 12.8 0 1.2 1 0 0 1 1 1 0 FANCI helical domain 1 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:11204-12062 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~11204-12062 SKN1 PF03935.10 g127317.t1 - 0.051 11.7 0 0.062 11.4 0 1.1 1 0 0 1 1 1 0 Beta-glucan synthesis-associated protein (SKN1) | Ref_seq=scaffold2819_contigs=1, transcript_loc=scaffold2819_contigs=1:48222-49279 Augustus predicted protein sequence Tobacco scaffold2819_contigs=1~48222-49279 FTP PF07504.8 g124034.t1 - 0.086 12.3 0 0.19 11.1 0 1.6 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1202903-1203504 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1202903-1203504 CCDC66 PF15236.1 g127032.t1 - 0.065 12.8 1.5 0.086 12.4 1 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:14339-14660 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~14339-14660 CBM_2 PF00553.14 g114298.t1 - 0.0095 15.9 0 6 6.9 0 2.1 2 0 0 2 2 2 2 Cellulose binding domain | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:87118-87810 Augustus predicted protein sequence Tobacco scaffold2644_contigs=21~87118-87810 LEA_4 PF02987.11 g72040.t1 - 0.17 11.7 2.9 0.8 9.6 0 2.3 3 0 0 3 3 3 0 Late embryogenesis abundant protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:162657-163004 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~162657-163004 zf-BED PF02892.10 g293.t1 - 0.0000083 25.4 0.3 0.000019 24.3 0.2 1.6 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold9_contigs=2, transcript_loc=scaffold9_contigs=2:12455-12865 Augustus predicted protein sequence Tobacco scaffold9_contigs=2~12455-12865 DUF1730 PF08331.5 g57412.t1 - 0.053 13.1 0 0.072 12.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1730) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:118573-118926 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~118573-118926 bcl-2I13 PF12201.3 g92465.t1 - 0.015 14.7 1.7 0.2 11.1 0.1 2.8 2 1 1 3 3 3 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:96376-98402 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~96376-98402 RIC3 PF15361.1 g92467.t1 - 0.15 12.2 0 0.17 12 0 1.2 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:102903-103247 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~102903-103247 DUF521 PF04412.8 g113980.t1 - 0.0046 15.5 0.1 0.0061 15.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:17411-17923 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~17411-17923 OAD_gamma PF04277.8 g63736.t1 - 0.049 14 1.1 0.23 11.8 0.7 1.9 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:239248-239559 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~239248-239559 ABC2_membrane_3 PF12698.2 g46435.t1 - 0.068 12.1 0.5 0.074 12 0.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:402763-403170 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~402763-403170 DUF2697 PF10906.3 g56076.t1 - 0.097 12.6 0.4 0.16 11.9 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2697) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:25153-25419 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~25153-25419 DpnD-PcfM PF14207.1 g86121.t1 - 0.45 10.2 3.5 0.97 9.2 2.4 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:233673-234128 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~233673-234128 PsbP PF01789.11 g25329.t1 - 0.08 12.3 0.1 0.16 11.4 0.1 1.5 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:86519-87271 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~86519-87271 zf-CCHC PF00098.18 g89810.t1 - 0.024 14.5 5.1 0.024 14.5 3.5 2.5 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:63712-64728 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~63712-64728 Allene_ox_cyc PF06351.6 g130039.t1 - 0.15 11.4 0 0.2 11 0 1.1 1 0 0 1 1 1 0 Allene oxide cyclase | Ref_seq=scaffold3349_contigs=1, transcript_loc=scaffold3349_contigs=1:1891-2196 Augustus predicted protein sequence Tobacco scaffold3349_contigs=1~1891-2196 ox_reductase_C PF08635.5 g107172.t1 - 0.12 11.8 0 0.15 11.4 0 1.2 1 0 0 1 1 1 0 Putative oxidoreductase C terminal | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:834800-836381 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~834800-836381 DUF1117 PF06547.7 g89896.t1 - 0.092 12.8 0.2 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1117) | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:104413-105678 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~104413-105678 BssS PF13991.1 g83085.t1 - 0.1 12.3 0.1 0.15 11.7 0 1.3 1 0 0 1 1 1 0 BssS protein family | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:74560-74829 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~74560-74829 DUF4108 PF13390.1 g99519.t1 - 0.0089 15.7 0.8 0.012 15.3 0.3 1.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4108) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:739484-739753 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~739484-739753 GP11 PF08677.5 g81738.t1 - 0.054 12.6 0 0.057 12.5 0 1.1 1 0 0 1 1 1 0 GP11 baseplate wedge protein | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:69517-69828 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~69517-69828 zf-BED PF02892.10 g82545.t1 - 0.0018 18 1.9 0.0043 16.7 1.3 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1751_contigs=5, transcript_loc=scaffold1751_contigs=5:58519-59467 Augustus predicted protein sequence Tobacco scaffold1751_contigs=5~58519-59467 Glyoxal_oxid_N PF07250.6 g125515.t1 - 0.091 11.8 1.7 0.12 11.4 1.2 1.1 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus | Ref_seq=scaffold2775_contigs=1, transcript_loc=scaffold2775_contigs=1:95366-95803 Augustus predicted protein sequence Tobacco scaffold2775_contigs=1~95366-95803 Cornifin PF02389.10 g117527.t1 - 0.038 13.7 0 0.048 13.4 0 1.1 1 0 0 1 1 1 0 Cornifin (SPRR) family | Ref_seq=scaffold2688_contigs=4, transcript_loc=scaffold2688_contigs=4:67714-67944 Augustus predicted protein sequence Tobacco scaffold2688_contigs=4~67714-67944 DUF2250 PF10007.4 g127532.t1 - 0.063 13.1 1.9 0.096 12.6 1.3 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) | Ref_seq=scaffold2828_contigs=1, transcript_loc=scaffold2828_contigs=1:65399-65614 Augustus predicted protein sequence Tobacco scaffold2828_contigs=1~65399-65614 Peripla_BP_5 PF13433.1 g32468.t1 - 0.052 12.2 0 0.073 11.8 0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:195767-198637 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~195767-198637 MRP_L53 PF10780.4 g113526.t1 - 0.015 15.3 0 8.1 6.5 0 2.5 2 0 0 2 2 2 0 39S ribosomal protein L53/MRP-L53 | Ref_seq=scaffold2635_contigs=10, transcript_loc=scaffold2635_contigs=10:21964-22769 Augustus predicted protein sequence Tobacco scaffold2635_contigs=10~21964-22769 DUF605 PF04652.11 g59809.t1 - 4.1 6.6 13.7 6.3 6 9.5 1.2 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:243775-246039 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~243775-246039 Sec8_exocyst PF04048.9 g87617.t1 - 0.0089 15.6 0.8 0.012 15.1 0.5 1.4 1 1 0 1 1 1 1 Sec8 exocyst complex component specific domain | Ref_seq=scaffold1889_contigs=7, transcript_loc=scaffold1889_contigs=7:18676-19137 Augustus predicted protein sequence Tobacco scaffold1889_contigs=7~18676-19137 T6SS_Vgr PF13296.1 g41085.t1 - 0.072 12.9 0 0.095 12.5 0 1.2 1 0 0 1 1 1 0 Putative type VI secretion system Rhs element Vgr | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:645878-646132 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~645878-646132 PGPGW PF09656.5 g18908.t1 - 0.023 14 0 0.071 12.4 0 1.9 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) | Ref_seq=scaffold559_contigs=7, transcript_loc=scaffold559_contigs=7:36088-36465 Augustus predicted protein sequence Tobacco scaffold559_contigs=7~36088-36465 zf-CCHC_5 PF14787.1 g108814.t1 - 0.0000076 25.3 3.1 0.000013 24.6 2.2 1.4 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:286431-286891 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~286431-286891 Antimicrobial_4 PF08024.6 g81009.t1 - 0.039 13.7 0.4 0.085 12.7 0.3 1.5 1 0 0 1 1 1 0 Ant antimicrobial peptide | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:18163-18573 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~18163-18573 ATHILA PF03078.10 g72080.t1 - 0.000000096 31 0 0.00000013 30.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:235677-236644 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~235677-236644 rve PF00665.21 g12436.t1 - 0.1 12.7 0.1 1.1 9.4 0.1 2.1 2 0 0 2 2 2 0 Integrase core domain | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:52696-54648 Augustus predicted protein sequence Tobacco scaffold427_contigs=11~52696-54648 DUF1091 PF06477.8 g42439.t1 - 0.048 14 0 0.13 12.6 0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:46206-47617 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~46206-47617 DUF504 PF04457.7 g116084.t1 - 0.06 13.5 2.1 2.3 8.4 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF504) | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:605326-605859 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~605326-605859 ATHILA PF03078.10 g115584.t1 - 0.0000061 25 0 0.0000066 24.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:682214-682516 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~682214-682516 DUF566 PF04484.7 g20496.t1 - 0.053 13 0.3 0.072 12.5 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF566) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:368870-369178 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~368870-369178 LZ_Tnp_IS66 PF13007.2 g128429.t1 - 0.046 14.3 1.5 0.075 13.7 1 1.3 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:34212-34679 Augustus predicted protein sequence Tobacco scaffold2867_contigs=1~34212-34679 SF-assemblin PF06705.6 g42944.t1 - 0.045 12.8 0.1 0.22 10.6 0 1.8 2 0 0 2 2 2 0 SF-assemblin/beta giardin | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:928035-928322 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~928035-928322 UBN2 PF14223.1 g32820.t1 - 0.058 13.1 0.1 0.13 12.1 0 1.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:58789-59064 Augustus predicted protein sequence Tobacco scaffold819_contigs=1~58789-59064 DNA_pol3_gamma3 PF12169.3 g13695.t1 - 0.026 14.2 0.1 0.031 14 0.1 1 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:351738-352025 Augustus predicted protein sequence Tobacco scaffold451_contigs=13~351738-352025 DUF4331 PF14224.1 g103507.t1 - 0.049 12.8 0 0.06 12.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4331) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:846373-846906 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~846373-846906 zf-CCHC PF00098.18 g51571.t1 - 0.009 15.9 1.1 0.013 15.4 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:192126-192437 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~192126-192437 Orbi_NS3 PF01616.11 g48211.t1 - 0.043 12.7 0 0.052 12.5 0 1.1 1 0 0 1 1 1 0 Orbivirus NS3 | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:554456-555963 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~554456-555963 AAA_10 PF12846.2 g8095.t1 - 0.023 14.1 0 0.028 13.8 0 1.1 1 0 0 1 1 1 0 AAA-like domain | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:26093-26500 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~26093-26500 Trypan_PARP PF05887.6 g94533.t1 - 0.031 14.1 9.3 0.046 13.5 6.4 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:704-1429 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~704-1429 DUF4572 PF15139.1 g40198.t1 - 0.11 12.3 0.1 0.69 9.7 0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4572) | Ref_seq=scaffold970_contigs=2, transcript_loc=scaffold970_contigs=2:12133-12921 Augustus predicted protein sequence Tobacco scaffold970_contigs=2~12133-12921 Clathrin PF00637.15 g81472.t1 - 0.074 12.6 0.4 0.096 12.2 0.3 1.1 1 0 0 1 1 1 0 Region in Clathrin and VPS | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:60217-60826 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~60217-60826 zf-CpG_bind_C PF12269.3 g124777.t1 - 0.067 12.6 0.9 0.089 12.2 0.6 1.2 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:128689-129186 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~128689-129186 YscW PF09619.5 g41173.t1 - 0.054 13.1 0.1 4 7.1 0 2.1 1 1 1 2 2 2 0 Type III secretion system lipoprotein chaperone (YscW) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:828686-828958 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~828686-828958 IFP_35_N PF07334.8 g9909.t1 - 0.02 14.8 0.7 0.046 13.6 0.5 1.8 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:310153-310650 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~310153-310650 ATHILA PF03078.10 g75256.t1 - 0.013 14.1 0 0.015 13.9 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:29325-29812 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~29325-29812 Slp PF03843.8 g35389.t1 - 0.069 12.1 0 0.11 11.5 0 1.2 1 0 0 1 1 1 0 Outer membrane lipoprotein Slp family | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:130017-130669 Augustus predicted protein sequence Tobacco scaffold871_contigs=9~130017-130669 Glyco_hydro_85 PF03644.8 g34585.t1 - 0.12 11.4 0 0.35 9.9 0 1.6 1 1 1 2 2 2 0 Glycosyl hydrolase family 85 | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:3641-5627 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~3641-5627 Death_2 PF14786.1 g106200.t1 - 0.035 13.8 0.1 0.074 12.7 0 1.6 2 0 0 2 2 2 0 Tube Death domain | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:101421-102352 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~101421-102352 CitX PF03802.9 g39202.t1 - 0.015 14.7 0.2 0.016 14.6 0.1 1.1 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:105230-105451 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~105230-105451 Med19 PF10278.4 g30108.t1 - 0.03 14 1 0.035 13.7 0.7 1 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:463893-464249 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~463893-464249 DUF2919 PF11143.3 g90823.t1 - 0.044 13.6 0.1 0.052 13.3 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2919) | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:1426990-1427702 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~1426990-1427702 Fibritin_C PF07921.7 g109668.t1 - 0.069 13 0 0.1 12.5 0 1.3 1 0 0 1 1 1 0 Fibritin C-terminal region | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:259114-259524 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~259114-259524 DUF1789 PF08748.6 g44534.t1 - 0.065 13.3 0.4 0.082 13 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1789) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:358502-359064 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~358502-359064 Orthopox_F8 PF05886.6 g20978.t1 - 0.056 13.2 0.1 0.072 12.9 0 1.1 1 0 0 1 1 1 0 Orthopoxvirus F8 protein | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:169103-169712 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~169103-169712 MerC PF03203.9 g38697.t1 - 0.056 13.8 0.2 0.066 13.5 0.2 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:445579-446220 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~445579-446220 DUF2851 PF11013.3 g74450.t1 - 0.1 11.3 0.1 0.11 11.1 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:267145-267414 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~267145-267414 Corona_nucleoca PF00937.13 g70917.t1 - 0.097 11.6 5.6 0.13 11.1 3.9 1.2 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein | Ref_seq=scaffold1498_contigs=4, transcript_loc=scaffold1498_contigs=4:111270-111947 Augustus predicted protein sequence Tobacco scaffold1498_contigs=4~111270-111947 Herpes_LMP2 PF07415.6 g82576.t1 - 4.4 5.7 7.5 4.7 5.6 5.2 1.1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold1755_contigs=7, transcript_loc=scaffold1755_contigs=7:1794-2471 Augustus predicted protein sequence Tobacco scaffold1755_contigs=7~1794-2471 CITED PF04487.7 g95144.t1 - 0.0061 16.8 0.3 0.015 15.5 0.1 1.6 1 1 1 2 2 2 1 CITED | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:194299-195089 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~194299-195089 DUF3246 PF11596.3 g15789.t1 - 0.027 13.7 9.1 0.42 9.8 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3246) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:300878-301768 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~300878-301768 Rsbr_N PF08678.5 g88721.t1 - 0.076 12.8 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Rsbr N terminal | Ref_seq=scaffold1934_contigs=9, transcript_loc=scaffold1934_contigs=9:1206-2317 Augustus predicted protein sequence Tobacco scaffold1934_contigs=9~1206-2317 DUF3598 PF12204.3 g123990.t1 - 0.054 12.7 0.2 0.068 12.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3598) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1061054-1062175 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1061054-1062175 FA PF08736.6 g40771.t1 - 7.5 6.4 6.3 40 4 0.3 3.2 2 1 1 3 3 3 0 FERM adjacent (FA) | Ref_seq=scaffold981_contigs=14, transcript_loc=scaffold981_contigs=14:82244-82915 Augustus predicted protein sequence Tobacco scaffold981_contigs=14~82244-82915 DUF4544 PF15077.1 g38581.t1 - 0.04 13.4 0 0.049 13.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4544) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:129032-129650 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~129032-129650 ATP-synt_DE PF00401.15 g85351.t1 - 0.077 12.8 0.4 0.64 9.9 0.1 2.1 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:264911-265327 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~264911-265327 Myb_DNA-bind_6 PF13921.1 g114154.t1 - 0.88 9.7 3 1.5 9 2 1.6 1 1 0 1 1 1 0 Myb-like DNA-binding domain | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:63636-63836 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~63636-63836 DUF4201 PF13870.1 g84906.t1 - 0.032 13.6 0.2 0.042 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:81564-83291 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~81564-83291 DUF3552 PF12072.3 g46233.t1 - 0.025 13.7 0.3 0.026 13.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:1-266 Augustus predicted protein sequence Tobacco scaffold1064_contigs=7~1-266 Transposase_28 PF04195.7 g61919.t1 - 0.089 12 0.1 0.14 11.4 0 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:59166-60185 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~59166-60185 DUF3809 PF12723.2 g126795.t1 - 0.026 14.4 0.2 4.8 7 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3809) | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:9918-10208 Augustus predicted protein sequence Tobacco scaffold2805_contigs=1~9918-10208 ATHILA PF03078.10 g91125.t1 - 0.0015 17.1 0 0.0016 17.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:256294-256623 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~256294-256623 DUF1381 PF07129.6 g70821.t1 - 0.042 13.2 0.2 0.08 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1381) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:242343-242775 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~242343-242775 ANAPC15 PF15243.1 g68224.t1 - 0.037 14 14 0.051 13.6 9.7 1.3 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 15 | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:402189-402449 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~402189-402449 I_LWEQ PF01608.12 g85799.t1 - 0.077 12.9 2.3 0.12 12.3 1.6 1.3 1 0 0 1 1 1 0 I/LWEQ domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:606970-608544 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~606970-608544 DUF2694 PF10904.3 g129537.t1 - 0.00093 19.1 0.1 0.002 18.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2694) | Ref_seq=scaffold2976_contigs=1, transcript_loc=scaffold2976_contigs=1:2208-2933 Augustus predicted protein sequence Tobacco scaffold2976_contigs=1~2208-2933 DUF4316 PF14195.1 g113240.t1 - 0.0067 16.4 2 0.0083 16.1 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4316) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:158031-159049 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~158031-159049 DBD_Tnp_Mut PF03108.10 g82666.t1 - 0.00000072 28.6 0.2 0.000001 28.2 0.1 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1760_contigs=2, transcript_loc=scaffold1760_contigs=2:4005-4469 Augustus predicted protein sequence Tobacco scaffold1760_contigs=2~4005-4469 Sulf_transp PF04143.9 g35184.t1 - 0.24 11.4 0.1 0.24 11.4 0.1 1.8 2 0 0 2 2 2 0 Sulphur transport | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:169328-169597 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~169328-169597 DUF2743 PF10899.3 g19064.t1 - 0.071 12.4 0.1 0.087 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:224333-225308 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~224333-225308 FdtA PF05523.6 g76176.t1 - 0.014 14.8 0.1 0.021 14.3 0 1.2 1 0 0 1 1 1 0 WxcM-like, C-terminal | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:172907-173410 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~172907-173410 Ribosomal_S2 PF00318.15 g58399.t1 - 0.079 12.1 1.6 0.088 12 0.6 1.4 1 1 0 1 1 1 0 Ribosomal protein S2 | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:394242-394598 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~394242-394598 DUF1395 PF07160.7 g114082.t1 - 0.11 11.9 0.1 0.39 10.1 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:206317-206886 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~206317-206886 CALCOCO1 PF07888.6 g92291.t1 - 0.0007 18 7.7 0.001 17.4 5.3 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:218646-222508 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~218646-222508 ATHILA PF03078.10 g93774.t1 - 0.0061 15.2 0 0.0061 15.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:15252-15874 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~15252-15874 DUF4502 PF14950.1 g51064.t1 - 0.024 13.7 0.2 0.027 13.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4502) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:6222-7911 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~6222-7911 DUF630 PF04783.7 g111002.t1 - 0.11 12.4 0 0.13 12.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF630) | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:9362-9781 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~9362-9781 DUF1364 PF07102.7 g73788.t1 - 0.05 13.4 0.8 0.076 12.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1364) | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:4848-5672 Augustus predicted protein sequence Tobacco scaffold1548_contigs=4~4848-5672 Flavi_glycoprot PF00869.15 g11762.t1 - 0.11 11.5 0.4 0.12 11.3 0.3 1.1 1 0 0 1 1 1 0 Flavivirus glycoprotein, central and dimerisation domains | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:98307-98693 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~98307-98693 SR-25 PF10500.4 g71239.t1 - 0.018 14.4 7.5 0.02 14.3 5.2 1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:329287-329562 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~329287-329562 ERM PF00769.14 g109766.t1 - 0.01 15.4 15.8 0.012 15.1 11 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:59104-59499 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~59104-59499 COPIIcoated_ERV PF07970.7 g12264.t1 - 0.027 14.1 1.5 0.034 13.7 1 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum vesicle transporter | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:422343-422762 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~422343-422762 Avl9 PF09794.4 g21257.t1 - 0.14 10.6 0 0.25 9.7 0 1.5 1 1 1 2 2 2 0 Transport protein Avl9 | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:83837-84280 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~83837-84280 MCC-bdg_PDZ PF10506.4 g20533.t1 - 0.016 15 0.6 0.025 14.3 0.4 1.3 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:424031-424327 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~424031-424327 ETF_QO PF05187.8 g74960.t1 - 0.06 13.3 0.5 0.066 13.2 0.3 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:178461-178673 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~178461-178673 Pentapeptide_3 PF13576.1 g28366.t1 - 0.0099 15.7 0 0.14 12 0.1 2.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:184481-184858 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~184481-184858 DUF2358 PF10184.4 g83486.t1 - 0.033 14.1 0 0.039 13.8 0 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2358) | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:98718-99201 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~98718-99201 zf-C4H2 PF10146.4 g8248.t1 - 4.7 7.1 8.3 5.1 7 1.3 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:9139-9804 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~9139-9804 BAR_2 PF10455.4 g21789.t1 - 0.031 13.1 2.9 0.037 12.9 2 1.1 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:175155-175457 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~175155-175457 DUF244 PF03112.9 g15079.t1 - 0.0098 15.4 0 0.013 15 0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (ORF7) DUF | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:181894-182331 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~181894-182331 ATHILA PF03078.10 g66066.t1 - 0.0001 21 0 0.00011 20.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:258284-258592 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~258284-258592 SPT6_acidic PF14632.1 g97555.t1 - 0.54 10.4 7.5 0.73 10 5.2 1.2 1 0 0 1 1 1 0 Acidic N-terminal SPT6 | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:162767-163105 Augustus predicted protein sequence Tobacco scaffold2138_contigs=7~162767-163105 PSRT PF07636.6 g114483.t1 - 0.25 10.8 2.3 0.37 10.3 1.6 1.3 1 0 0 1 1 1 0 PSRT | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:120056-120262 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~120056-120262 Topo-VIb_trans PF09239.6 g61364.t1 - 0.11 11.9 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 Topoisomerase VI B subunit, transducer | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:60184-64544 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~60184-64544 UxuA PF03786.8 g107774.t1 - 0.0065 15 0 0.0068 15 0 1 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:29587-29947 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~29587-29947 DUF1554 PF07588.6 g106785.t1 - 0.05 13 2.4 0.057 12.9 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1554) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:584000-584453 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~584000-584453 LCE PF14672.1 g100618.t1 - 0.1 13 0.5 0.14 12.6 0.3 1.3 1 1 0 1 1 1 0 Late cornified envelope | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:110177-110787 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~110177-110787 Mt_ATP-synt_B PF05405.9 g18683.t1 - 0.033 13.6 1.3 0.036 13.5 0.9 1.1 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:435462-435674 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~435462-435674 Retrotrans_gag PF03732.12 g62417.t1 - 0.018 15.1 0 0.042 13.9 0 1.7 1 1 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:184718-185053 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~184718-185053 CP12 PF02672.10 g50800.t1 - 0.021 15.2 0 0.029 14.8 0 1.2 1 0 0 1 1 1 0 CP12 domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:182668-183124 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~182668-183124 Myc_N PF01056.13 g100898.t1 - 0.0065 15.6 3.8 0.0066 15.6 2.6 1.2 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:290648-290953 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~290648-290953 SUV3_C PF12513.3 g109036.t1 - 0.1 12 1.8 8.8 5.8 0.1 2.4 2 0 0 2 2 2 0 Mitochondrial degradasome RNA helicase subunit C terminal | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:23088-24503 Augustus predicted protein sequence Tobacco scaffold2473_contigs=16~23088-24503 DUF1199 PF06712.6 g80985.t1 - 0.053 13.3 0.2 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:220798-221142 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~220798-221142 Bac_globin PF01152.16 g13462.t1 - 0.0075 16.2 0.2 6.4 6.8 0 2.6 2 0 0 2 2 2 2 Bacterial-like globin | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:98500-99738 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~98500-99738 Tropomyosin PF00261.15 g23886.t1 - 0.015 14.4 1.1 0.019 14 0.8 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:315120-315407 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~315120-315407 HALZ PF02183.13 g73675.t1 - 0.099 12.3 9.4 0.72 9.6 1.2 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:168452-169174 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~168452-169174 DUF915 PF06028.6 g95641.t1 - 0.049 12.7 0 0.055 12.5 0 1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:5698-5925 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~5698-5925 DUF3656 PF12392.3 g18716.t1 - 0.021 14.9 0.9 0.028 14.4 0.6 1.1 1 0 0 1 1 1 0 Collagenase | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:559537-560202 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~559537-560202 RMP PF14996.1 g79504.t1 - 0.059 13.2 1.5 0.072 13 1.1 1.1 1 0 0 1 1 1 0 Retinal Maintenance | Ref_seq=scaffold1694_contigs=1, transcript_loc=scaffold1694_contigs=1:2197-3321 Augustus predicted protein sequence Tobacco scaffold1694_contigs=1~2197-3321 WT1 PF02165.10 g61292.t1 - 0.044 12.8 0 0.05 12.6 0 1.2 1 0 0 1 1 1 0 Wilm's tumour protein | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:108370-108738 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~108370-108738 UPF0561 PF10573.4 g77642.t1 - 0.16 11.8 0.6 0.19 11.5 0.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:13222-13643 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~13222-13643 Beta-Casp PF10996.3 g99244.t1 - 0.11 12.4 0 0.13 12.1 0 1.1 1 0 0 1 1 1 0 Beta-Casp domain | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:137023-137838 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~137023-137838 UPF0542 PF15086.1 g29956.t1 - 0.018 14.7 0.1 0.05 13.3 0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0542 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:105764-106267 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~105764-106267 Peptidase_C48 PF02902.14 g56168.t1 - 0.00012 21.7 0 0.00018 21.2 0 1.4 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:176564-178476 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~176564-178476 FH2 PF02181.18 g29335.t1 - 0.041 12.7 0.3 0.048 12.5 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:256677-257126 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~256677-257126 DUF4606 PF15379.1 g74291.t1 - 1.1 9.4 4.3 1.6 8.8 3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4606) | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:105486-105935 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~105486-105935 YdjO PF14169.1 g47273.t1 - 0.029 13.8 0 0.065 12.6 0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:86389-90612 Augustus predicted protein sequence Tobacco scaffold1091_contigs=17~86389-90612 Flavi_propep PF01570.12 g81289.t1 - 0.056 13.1 0 0.072 12.8 0 1.2 1 0 0 1 1 1 0 Flavivirus polyprotein propeptide | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:69447-69677 Augustus predicted protein sequence Tobacco scaffold1728_contigs=6~69447-69677 DASH_Spc19 PF08287.6 g70879.t1 - 0.021 14.4 1.2 0.026 14.1 0.8 1.1 1 0 0 1 1 1 0 Spc19 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:368414-368641 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~368414-368641 zf-UBR PF02207.15 g72906.t1 - 0.035 13.8 0.8 0.044 13.5 0.6 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:123271-123528 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~123271-123528 NPV_P10 PF05531.7 g99603.t1 - 0.052 13.8 0 0.073 13.3 0 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:71588-71977 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~71588-71977 ATHILA PF03078.10 g91124.t1 - 0.00046 18.8 0.2 0.12 10.9 0.1 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:255401-256249 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~255401-256249 PPTA PF01239.17 g62477.t1 - 0.14 11.5 1.4 0.29 10.5 1 1.5 1 0 0 1 1 1 0 Protein prenyltransferase alpha subunit repeat | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:6426-6821 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~6426-6821 GDE_N_bis PF14742.1 g12874.t1 - 0.062 12.6 0 0.071 12.4 0 1.2 1 0 0 1 1 1 0 N-terminal domain of (some) glycogen debranching enzymes | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:82817-83828 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~82817-83828 Pox_G7 PF05503.7 g123949.t1 - 0.054 12 0.1 0.058 12 0.1 1 1 0 0 1 1 1 0 Poxvirus G7-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:958978-959334 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~958978-959334 zf-CCHC PF00098.18 g6478.t1 - 0.038 13.9 1.6 0.063 13.2 1.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold297_contigs=3, transcript_loc=scaffold297_contigs=3:124621-125801 Augustus predicted protein sequence Tobacco scaffold297_contigs=3~124621-125801 Cortex-I_coil PF09304.5 g58130.t1 - 0.00074 19.5 14.1 0.001 19 9.5 1.4 1 1 0 1 1 1 1 Cortexillin I, coiled coil | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:438712-439379 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~438712-439379 SAP PF02037.22 g116347.t1 - 0.094 12.2 1.2 0.17 11.4 0.9 1.5 1 0 0 1 1 1 0 SAP domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:152282-153787 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~152282-153787 DUF4464 PF14713.1 g28737.t1 - 0.15 11.4 0 0.2 11 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4464) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:150111-151249 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~150111-151249 DUF4515 PF14988.1 g81607.t1 - 0.013 15.1 2.5 0.017 14.8 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:303250-304013 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~303250-304013 RVT_3 PF13456.1 g89778.t1 - 0.032 14 0.1 0.04 13.6 0.1 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:13067-13270 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~13067-13270 PHD_3 PF13922.1 g112087.t1 - 0.077 13.2 0.4 14 6 0 2.2 2 0 0 2 2 2 0 PHD domain of transcriptional enhancer, Asx | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:129951-130455 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~129951-130455 DUF4094 PF13334.1 g17114.t1 - 0.13 12.6 0.1 0.9 9.9 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) | Ref_seq=scaffold527_contigs=2, transcript_loc=scaffold527_contigs=2:45869-46854 Augustus predicted protein sequence Tobacco scaffold527_contigs=2~45869-46854 RmuC PF02646.11 g30185.t1 - 0.031 13.1 0 0.031 13.1 0 1 1 0 0 1 1 1 0 RmuC family | Ref_seq=scaffold772_contigs=7, transcript_loc=scaffold772_contigs=7:126526-126783 Augustus predicted protein sequence Tobacco scaffold772_contigs=7~126526-126783 RES PF08808.6 g40681.t1 - 0.05 13.6 0.3 0.092 12.8 0.1 1.6 1 1 1 2 2 2 0 RES domain | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:277354-277970 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~277354-277970 DUF2811 PF10929.3 g60964.t1 - 0.089 12.8 0 0.17 11.8 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) | Ref_seq=scaffold1324_contigs=9, transcript_loc=scaffold1324_contigs=9:242073-242421 Augustus predicted protein sequence Tobacco scaffold1324_contigs=9~242073-242421 Toxin_18 PF08087.6 g127250.t1 - 0.0049 16.6 0.9 0.0075 16 0.6 1.2 1 0 0 1 1 1 1 Conotoxin O-superfamily | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:49729-50504 Augustus predicted protein sequence Tobacco scaffold2817_contigs=1~49729-50504 KRTAP PF11759.3 g107197.t1 - 0.057 13.6 11 0.084 13.1 7.6 1.3 1 0 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:883045-885102 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~883045-885102 CENP-F_leu_zip PF10473.4 g19957.t1 - 0.00098 18.9 6.8 0.0011 18.8 4.7 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:121298-121701 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~121298-121701 Keratin PF02422.11 g46708.t1 - 0.15 12 0 0.15 12 0 1.2 1 0 0 1 1 1 0 Keratin | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:894-1100 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~894-1100 Phage_GP20 PF06810.6 g99583.t1 - 0.01 15.3 4.7 0.023 14.1 3.2 1.5 1 0 0 1 1 1 0 Phage minor structural protein GP20 | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:37808-40157 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~37808-40157 Terminase_2 PF03592.11 g40451.t1 - 0.075 13.3 0.6 0.097 12.9 0.4 1.1 1 0 0 1 1 1 0 Terminase small subunit | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:232288-232620 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~232288-232620 Sigma70_ner PF04546.8 g90012.t1 - 0.0043 16.6 6.3 0.0043 16.6 4.4 1.8 2 0 0 2 2 2 1 Sigma-70, non-essential region | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:235016-235910 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~235016-235910 DUF853 PF05872.7 g82328.t1 - 0.029 12.7 4.4 0.033 12.5 3 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:228803-229461 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~228803-229461 AAA_16 PF13191.1 g37194.t1 - 0.015 15.2 0 0.019 14.9 0 1.2 1 0 0 1 1 1 0 AAA ATPase domain | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:16993-19455 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~16993-19455 DUF4455 PF14643.1 g72855.t1 - 0.11 11 0.3 0.12 10.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:25445-25729 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~25445-25729 Lant_dehyd_N PF04737.8 g101386.t1 - 0.03 14.3 0 0.045 13.7 0 1.3 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:145829-146765 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~145829-146765 DUF937 PF06078.6 g112239.t1 - 0.0046 17.1 0 30 4.8 0 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF937) | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:52551-53630 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~52551-53630 DivIVA PF05103.8 g97016.t1 - 0.0069 16.4 2.6 0.012 15.6 1.8 1.3 1 0 0 1 1 1 1 DivIVA protein | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:334276-334818 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~334276-334818 DED PF01335.16 g67801.t1 - 0.043 13.9 0 0.087 12.9 0 1.5 2 0 0 2 2 2 0 Death effector domain | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:351884-352442 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~351884-352442 RVT_3 PF13456.1 g9174.t1 - 0.00009 22.1 0 0.00011 21.8 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:77858-78112 Augustus predicted protein sequence Tobacco scaffold353_contigs=4~77858-78112 ITI_HC_C PF06668.7 g60389.t1 - 0.078 12.3 0 0.099 12 0 1.2 1 0 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:15078-15350 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~15078-15350 MAP65_ASE1 PF03999.7 g10459.t1 - 2 6.9 3.6 2.4 6.6 2.5 1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:35768-36359 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~35768-36359 HrcA PF01628.16 g21288.t1 - 0.0096 15.5 0.2 0.015 14.9 0.2 1.2 1 0 0 1 1 1 1 HrcA protein C terminal domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:13411-13713 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~13411-13713 DUF2681 PF10883.3 g57458.t1 - 0.58 10.3 3.6 0.71 10.1 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:194817-195047 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~194817-195047 HALZ PF02183.13 g81741.t1 - 0.059 13 5.1 0.6 9.8 0.2 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:71512-72362 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~71512-72362 Meth_synt_2 PF01717.13 g111891.t1 - 0.011 14.7 0 0.013 14.4 0 1 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:39893-40237 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~39893-40237 ox_reductase_C PF08635.5 g58084.t1 - 0.045 13.2 0 0.064 12.6 0 1.4 1 0 0 1 1 1 0 Putative oxidoreductase C terminal | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:327871-328669 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~327871-328669 SR-25 PF10500.4 g61727.t1 - 6.8 6 6.4 11 5.4 4.4 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:189810-194835 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~189810-194835 PAD_N PF08526.5 g58527.t1 - 0.022 14.8 0 0.026 14.5 0 1.1 1 0 0 1 1 1 0 Protein-arginine deiminase (PAD) N-terminal domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:71704-72294 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~71704-72294 DUF2517 PF10725.4 g57965.t1 - 1 9 4.7 26 4.5 0.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2517) | Ref_seq=scaffold1265_contigs=3, transcript_loc=scaffold1265_contigs=3:51401-51904 Augustus predicted protein sequence Tobacco scaffold1265_contigs=3~51401-51904 MscS_porin PF12795.2 g2110.t1 - 0.014 14.6 2.2 0.025 13.9 0.3 1.9 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:16646-17113 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~16646-17113 DUF2341 PF10102.4 g60341.t1 - 0.13 12.3 0 0.16 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2341) | Ref_seq=scaffold1306_contigs=15, transcript_loc=scaffold1306_contigs=15:37013-37249 Augustus predicted protein sequence Tobacco scaffold1306_contigs=15~37013-37249 DUF2920 PF11144.3 g45261.t1 - 0.012 14.6 0 0.014 14.4 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:46220-46560 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~46220-46560 CaMKII_AD PF08332.5 g52448.t1 - 0.038 13.8 0 0.25 11.2 0 1.9 1 1 1 2 2 2 0 Calcium/calmodulin dependent protein kinase II Association | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:282796-283620 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~282796-283620 K-box PF01486.12 g115133.t1 - 0.093 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 K-box region | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:73921-74346 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~73921-74346 QLQ PF08880.6 g107084.t1 - 0.24 10.8 4.6 2.4 7.6 0.2 3.1 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:605946-606278 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~605946-606278 YwhD PF08741.5 g70229.t1 - 0.013 14.9 0 0.014 14.8 0 1.1 1 0 0 1 1 1 0 YwhD family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:105722-106075 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~105722-106075 NST1 PF13945.1 g52143.t1 - 0.11 12.5 12.5 0.13 12.3 8.7 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:522522-522758 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~522522-522758 Nuc_recep-AF1 PF11825.3 g109265.t1 - 0.12 12.2 0.1 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold2492_contigs=9, transcript_loc=scaffold2492_contigs=9:2184-2426 Augustus predicted protein sequence Tobacco scaffold2492_contigs=9~2184-2426 Pollen_allerg_1 PF01357.16 g114527.t1 - 0.041 13.6 0.1 3.7 7.4 0 2.3 2 0 0 2 2 2 0 Pollen allergen | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:336124-336837 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~336124-336837 HTH_33 PF13592.1 g109584.t1 - 0.036 13.6 0.2 0.069 12.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:100646-101595 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~100646-101595 Gly-rich_Ago1 PF12764.2 g97469.t1 - 0.023 15.2 0.8 0.03 14.9 0.6 1.2 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:105501-105812 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~105501-105812 Pam16 PF03656.8 g43821.t1 - 0.0024 17.6 0.1 0.0031 17.3 0.1 1.1 1 0 0 1 1 1 1 Pam16 | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:58257-58526 Augustus predicted protein sequence Tobacco scaffold1029_contigs=5~58257-58526 Delta_lysin PF05372.6 g73806.t1 - 0.045 13.1 0 0.075 12.4 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:52735-57035 Augustus predicted protein sequence Tobacco scaffold1548_contigs=4~52735-57035 Mito_fiss_reg PF05308.6 g18430.t1 - 0.0061 15.9 1.8 0.007 15.7 1.2 1 1 0 0 1 1 1 1 Mitochondrial fission regulator | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:67676-67987 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~67676-67987 YdjO PF14169.1 g4918.t1 - 0.048 13.1 0 0.097 12.1 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:86937-87746 Augustus predicted protein sequence Tobacco scaffold266_contigs=2~86937-87746 IncA PF04156.9 g49933.t1 - 0.0076 15.8 5.4 0.012 15.2 3.8 1.3 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:395055-398066 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~395055-398066 Carboxyl_trans PF01039.17 g69751.t1 - 0.2 9.9 1 0.23 9.7 0.7 1.1 1 0 0 1 1 1 0 Carboxyl transferase domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:39011-40422 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~39011-40422 LRR_8 PF13855.1 g115969.t1 - 0.074 12.8 0.3 12 5.7 0 2.5 2 0 0 2 2 2 0 Leucine rich repeat | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:197227-197766 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~197227-197766 Tombus_P33 PF08500.5 g117490.t1 - 0.12 12 0 0.19 11.4 0 1.2 1 0 0 1 1 1 0 Tombusvirus p33 | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:62905-63496 Augustus predicted protein sequence Tobacco scaffold2686_contigs=11~62905-63496 DUF3741 PF12552.3 g63047.t1 - 0.13 11.9 3.9 5.4 6.8 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3741) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:303022-304652 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~303022-304652 DUF4283 PF14111.1 g110670.t1 - 0.0000029 26.4 0 0.058 12.4 0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4283) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:220052-220730 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~220052-220730 CENP-R PF06729.7 g40003.t1 - 0.059 13 2.6 0.078 12.6 1.6 1.4 1 1 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:173961-174371 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~173961-174371 DUF3353 PF11833.3 g71016.t1 - 0.056 12.9 0.1 0.063 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:315837-316372 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~315837-316372 Abhydrolase_4 PF08386.5 g59405.t1 - 0.0091 15.8 0 0.012 15.5 0 1.2 1 0 0 1 1 1 1 TAP-like protein | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:62630-63586 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~62630-63586 TRC8_N PF13705.1 g50857.t1 - 0.067 11.7 0 0.092 11.2 0 1.1 1 0 0 1 1 1 0 TRC8 N-terminal domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:337368-337886 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~337368-337886 Dala_Dala_lig_N PF01820.16 g80710.t1 - 0.03 14.6 0.2 0.04 14.2 0.1 1.2 1 0 0 1 1 1 0 D-ala D-ala ligase N-terminus | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:151601-152356 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~151601-152356 DUF4571 PF15137.1 g40775.t1 - 0.039 13.3 0 0.049 13 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4571) | Ref_seq=scaffold981_contigs=14, transcript_loc=scaffold981_contigs=14:99958-100473 Augustus predicted protein sequence Tobacco scaffold981_contigs=14~99958-100473 DNAP_B_exo_N PF08452.5 g19924.t1 - 2.5 7.4 5.5 13 5.1 0.2 2.8 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:54582-54815 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~54582-54815 GRP PF07172.6 g46348.t1 - 0.0026 18.2 9.7 0.0033 17.8 6.7 1.2 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:141457-141684 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~141457-141684 RVT_3 PF13456.1 g53492.t1 - 0.0095 15.6 0 1.8 8.4 0 2.2 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:450366-452026 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~450366-452026 Toxin_32 PF08120.6 g109022.t1 - 2.6 7.7 7.5 13 5.5 0.6 2.4 2 0 0 2 2 2 0 Tamulustoxin family | Ref_seq=scaffold2470_contigs=4, transcript_loc=scaffold2470_contigs=4:19720-20900 Augustus predicted protein sequence Tobacco scaffold2470_contigs=4~19720-20900 Kelch_2 PF07646.10 g128656.t1 - 0.087 12.6 2.7 23 4.9 0.1 3.1 3 0 0 3 3 3 0 Kelch motif | Ref_seq=scaffold2880_contigs=1, transcript_loc=scaffold2880_contigs=1:8413-8885 Augustus predicted protein sequence Tobacco scaffold2880_contigs=1~8413-8885 DUF3987 PF13148.1 g60235.t1 - 0.092 11.2 2.6 0.081 11.4 0.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:6648-8041 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~6648-8041 DUF347 PF03988.7 g52192.t1 - 0.0077 16 0 0.01 15.6 0 1.2 1 0 0 1 1 1 1 Repeat of Unknown Function (DUF347) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:679494-679787 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~679494-679787 SR-25 PF10500.4 g45767.t1 - 0.00027 20.4 9.4 0.00044 19.8 6.5 1.4 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:26019-27041 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~26019-27041 DUF508 PF04370.7 g74121.t1 - 0.028 14 1.2 0.037 13.6 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF508) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:578192-578623 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~578192-578623 DUF1509 PF07420.6 g30286.t1 - 0.25 10.5 4.6 0.22 10.7 2.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1509) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:154988-156975 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~154988-156975 Spc7 PF08317.6 g17011.t1 - 0.0073 15 0.7 0.0082 14.8 0.5 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:250936-251709 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~250936-251709 PSD2 PF07624.6 g21244.t1 - 0.14 11.8 0.3 0.42 10.2 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:64655-64981 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~64655-64981 Aida_N PF08910.5 g101883.t1 - 0.15 12.2 0 0.33 11.2 0 1.6 2 0 0 2 2 2 0 Aida N-terminus | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:104847-106084 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~104847-106084 Paramyxo_ncap PF00973.14 g112591.t1 - 0.14 10.8 0 0.18 10.4 0 1 1 0 0 1 1 1 0 Paramyxovirus nucleocapsid protein | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:244099-245213 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~244099-245213 DUF818 PF05677.7 g4043.t1 - 0.11 11.1 0 0.14 10.8 0 1.1 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:65635-66096 Augustus predicted protein sequence Tobacco scaffold249_contigs=5~65635-66096 DUF2701 PF10857.3 g39154.t1 - 0.033 13.9 0 0.05 13.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2701) | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:505456-505743 Augustus predicted protein sequence Tobacco scaffold948_contigs=6~505456-505743 APP_E2 PF12925.2 g73108.t1 - 0.0055 16.3 0 0.0077 15.8 0 1.1 1 0 0 1 1 1 1 E2 domain of amyloid precursor protein | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:82548-82919 Augustus predicted protein sequence Tobacco scaffold1529_contigs=6~82548-82919 BCIP PF13862.1 g123712.t1 - 0.034 13.6 0.3 0.036 13.5 0.2 1.1 1 0 0 1 1 1 0 p21-C-terminal region-binding protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:346036-346257 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~346036-346257 Gag_p24 PF00607.15 g7342.t1 - 0.0018 17.8 0 0.0022 17.5 0 1.2 1 0 0 1 1 1 1 gag gene protein p24 (core nucleocapsid protein) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:48928-49549 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~48928-49549 CNPase PF05881.7 g101461.t1 - 0.083 12.2 0 0.093 12.1 0 1.1 1 0 0 1 1 1 0 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:69898-70303 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~69898-70303 ATHILA PF03078.10 g15916.t1 - 4.7E-009 35.3 0.2 0.000000082 31.2 0 2.3 2 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:71020-71868 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~71020-71868 DUF4042 PF13251.1 g37020.t1 - 0.093 12.1 0 0.1 12 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4042) | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:143109-143393 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~143109-143393 U3_assoc_6 PF08640.6 g58970.t1 - 0.083 12.6 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 U3 small nucleolar RNA-associated protein 6 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:311569-311949 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~311569-311949 Imm37 PF15598.1 g28003.t1 - 0.11 12.3 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Immunity protein 37 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:735736-736084 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~735736-736084 MmlI PF09448.5 g92853.t1 - 0.13 12 0 0.17 11.6 0 1.3 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase | Ref_seq=scaffold1997_contigs=2, transcript_loc=scaffold1997_contigs=2:49267-49596 Augustus predicted protein sequence Tobacco scaffold1997_contigs=2~49267-49596 AF1Q PF15017.1 g112529.t1 - 0.0008 19.2 0.1 0.77 9.7 0 3.1 3 0 0 3 3 3 1 Drug resistance and apoptosis regulator | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:113169-115068 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~113169-115068 DUF106 PF01956.11 g117571.t1 - 0.043 13.3 0.5 0.05 13.1 0.3 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF106 | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:71104-72071 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~71104-72071 DUF4296 PF14129.1 g39715.t1 - 0.043 13.9 0.3 0.053 13.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:86830-87102 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~86830-87102 DUF945 PF06097.6 g128385.t1 - 0.13 11 0 0.16 10.7 0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) | Ref_seq=scaffold2865_contigs=1, transcript_loc=scaffold2865_contigs=1:41906-42181 Augustus predicted protein sequence Tobacco scaffold2865_contigs=1~41906-42181 ATHILA PF03078.10 g18398.t1 - 0.000059 21.8 0 0.0054 15.3 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:12295-12750 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~12295-12750 DUF3275 PF11679.3 g42521.t1 - 0.053 13.1 0.9 0.058 13 0.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:48771-49260 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~48771-49260 BTK PF00779.14 g117478.t1 - 0.12 12 0.2 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:39628-40552 Augustus predicted protein sequence Tobacco scaffold2686_contigs=11~39628-40552 RVT_3 PF13456.1 g14801.t1 - 0.066 13 0 0.09 12.5 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:227183-228460 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~227183-228460 TSC22 PF01166.13 g12119.t1 - 0.025 14.5 3.8 0.025 14.5 2.6 1.7 2 0 0 2 2 2 0 TSC-22/dip/bun family | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:83867-84409 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~83867-84409 POX PF07526.6 g124698.t1 - 0.069 13.3 0.3 0.077 13.2 0.2 1.1 1 0 0 1 1 1 0 Associated with HOX | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:304474-304764 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~304474-304764 ANTH PF07651.11 g58532.t1 - 0.1 11.2 0.1 0.2 10.3 0 1.3 1 1 0 1 1 1 0 ANTH domain | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:99321-99617 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~99321-99617 Vps39_2 PF10367.4 g71818.t1 - 0.23 11.6 2.1 0.38 10.9 1.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:160494-161521 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~160494-161521 Cytochrom_B558a PF05038.8 g55424.t1 - 1.7 8.2 3.6 0.86 9.1 0.1 2.2 1 1 1 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:103047-104748 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~103047-104748 RIO1 PF01163.17 g55366.t1 - 0.0058 15.9 0 0.0067 15.7 0 1.1 1 0 0 1 1 1 1 RIO1 family | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:206581-206838 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~206581-206838 RVT_3 PF13456.1 g47879.t1 - 0.000000055 32.4 0.3 0.00000031 30 0.1 2 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:441161-442954 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~441161-442954 DUF2127 PF09900.4 g75928.t1 - 0.11 12.5 0.1 0.14 12.1 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:226629-227048 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~226629-227048 PT PF04886.7 g47741.t1 - 0.23 10.8 3.4 4.7 6.6 0.1 2.2 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:656848-657887 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~656848-657887 Fe_dep_repr_C PF02742.10 g116332.t1 - 0.14 11.8 0.2 3.7 7.2 0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:112726-113085 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~112726-113085 TPR_7 PF13176.1 g2935.t1 - 0.15 11.9 0.5 0.32 10.9 0.4 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:84178-84804 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~84178-84804 Acetyltransf_11 PF13720.1 g88947.t1 - 0.067 13.4 0 0.084 13.1 0 1.1 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:274996-275232 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~274996-275232 NAM-associated PF14303.1 g122875.t1 - 0.000022 24.8 12.3 0.000029 24.4 8.5 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:13121-13522 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~13121-13522 DUF4106 PF13388.1 g58363.t1 - 5.5 5.8 5.1 6.7 5.5 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:260609-261040 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~260609-261040 ATHILA PF03078.10 g24767.t1 - 0.000000028 32.8 0 0.000000028 32.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:43027-43269 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~43027-43269 Pox_A14 PF05767.7 g104992.t1 - 0.0097 15.8 0 0.012 15.5 0 1.1 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:56716-57000 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~56716-57000 YqjK PF13997.1 g200.t1 - 0.1 12.7 0.1 0.23 11.6 0 1.5 1 0 0 1 1 1 0 YqjK-like protein | Ref_seq=scaffold7_contigs=9, transcript_loc=scaffold7_contigs=9:31549-33212 Augustus predicted protein sequence Tobacco scaffold7_contigs=9~31549-33212 FBA_1 PF07734.8 g102492.t1 - 0.12 12 0.2 17 5 0 2.5 1 1 0 2 2 2 0 F-box associated | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:17155-18783 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~17155-18783 CENP-F_leu_zip PF10473.4 g81280.t1 - 0.0026 17.5 6.6 0.0026 17.5 4.5 1.6 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:49539-50051 Augustus predicted protein sequence Tobacco scaffold1728_contigs=6~49539-50051 zf-CCHC PF00098.18 g125630.t1 - 0.000021 24.2 0.7 0.000031 23.6 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:92135-92413 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~92135-92413 Vasculin PF15337.1 g75710.t1 - 0.00019 21.8 0 0.79 10.2 0 2.2 2 0 0 2 2 2 2 Vascular protein family Vasculin-like 1 | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:7231-8403 Augustus predicted protein sequence Tobacco scaffold1580_contigs=5~7231-8403 CDC45 PF02724.9 g2648.t1 - 0.021 12.9 12.3 0.021 12.8 8.5 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:8781-9809 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~8781-9809 DUF4290 PF14123.1 g112171.t1 - 0.0043 16.2 0.2 0.0071 15.5 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4290) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:145698-146027 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~145698-146027 DUF1196 PF06709.6 g86361.t1 - 0.017 15 3.2 3.4 7.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1196) | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:121920-123696 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~121920-123696 H-kinase_dim PF02895.9 g63106.t1 - 0.032 14.5 0.1 0.045 14 0.1 1.2 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold1366_contigs=6, transcript_loc=scaffold1366_contigs=6:141108-141491 Augustus predicted protein sequence Tobacco scaffold1366_contigs=6~141108-141491 DNAP_B_exo_N PF08452.5 g57894.t1 - 0.026 13.7 0.3 0.047 12.9 0.2 1.4 1 0 0 1 1 1 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold1260_contigs=17, transcript_loc=scaffold1260_contigs=17:565476-565781 Augustus predicted protein sequence Tobacco scaffold1260_contigs=17~565476-565781 Pox_Ag35 PF03286.9 g34250.t1 - 0.12 11.9 2.1 0.13 11.7 1.5 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:103092-103656 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~103092-103656 AAA_13 PF13166.1 g46713.t1 - 0.038 12.4 3.4 0.043 12.2 2.3 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:17032-17483 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~17032-17483 HR1 PF02185.11 g32675.t1 - 0.02 14.6 0.2 0.03 14 0.1 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:657909-658235 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~657909-658235 DUF2360 PF10152.4 g8727.t1 - 0.83 9.9 4.4 0.86 9.8 3 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:74873-75157 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~74873-75157 DUF1985 PF09331.6 g2974.t1 - 0.004 16.9 0.1 0.0088 15.8 0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:5440-7899 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~5440-7899 NICE-3 PF07406.6 g115857.t1 - 0.0083 15.6 0.1 0.0089 15.5 0 1.1 1 0 0 1 1 1 1 NICE-3 protein | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:105766-105969 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~105766-105969 DUF2710 PF10921.3 g71519.t1 - 0.0055 16.8 0 0.0093 16 0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2710) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:183046-183642 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~183046-183642 DUF2418 PF10332.4 g58961.t1 - 0.39 11 2.6 0.6 10.4 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2418) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:290086-291761 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~290086-291761 RepB-RCR_reg PF10723.4 g114606.t1 - 0.076 12.7 1.6 0.077 12.7 0.2 1.6 2 0 0 2 2 2 0 Replication regulatory protein RepB | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:49347-49676 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~49347-49676 HMD PF03201.11 g49167.t1 - 0.098 12.5 0 0.15 12 0 1.3 1 1 0 1 1 1 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:164806-165153 Augustus predicted protein sequence Tobacco scaffold1113_contigs=8~164806-165153 MHCassoc_trimer PF08831.5 g93239.t1 - 0.37 10.6 1.9 0.28 11 0.4 1.6 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:43399-43647 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~43399-43647 AAA_27 PF13514.1 g12855.t1 - 0.073 10.7 0.5 0.09 10.4 0.3 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:49393-50204 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~49393-50204 ATHILA PF03078.10 g114062.t1 - 0.022 13.3 0 0.026 13.1 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:171349-172352 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~171349-172352 DUF1985 PF09331.6 g52591.t1 - 0.00000004 33.1 0 0.00000007 32.3 0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:234398-234751 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~234398-234751 PilP PF04351.8 g110551.t1 - 0.15 11.9 0 1 9.2 0 1.9 2 0 0 2 2 2 0 Pilus assembly protein, PilP | Ref_seq=scaffold2564_contigs=13, transcript_loc=scaffold2564_contigs=13:42222-43802 Augustus predicted protein sequence Tobacco scaffold2564_contigs=13~42222-43802 DUF2744 PF10910.3 g62521.t1 - 0.013 15.3 0.1 0.027 14.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2744) | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:138211-140189 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~138211-140189 DUF3844 PF12955.2 g60093.t1 - 1.4 9 4.7 1.2 9.3 0.8 2 1 1 1 2 2 2 0 Domain of unknown function (DUF3844) | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:292494-292733 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~292494-292733 Aerolysin PF01117.15 g80577.t1 - 0.044 12.7 0.3 0.049 12.5 0.2 1.1 1 0 0 1 1 1 0 Aerolysin toxin | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:69647-70215 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~69647-70215 DUF2407 PF10302.4 g12738.t1 - 0.073 13.2 0 0.095 12.8 0 1.2 1 0 0 1 1 1 0 DUF2407 ubiquitin-like domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:372434-374132 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~372434-374132 Interferon PF00143.14 g53021.t1 - 0.083 12.7 0.1 0.12 12.2 0 1.3 1 0 0 1 1 1 0 Interferon alpha/beta domain | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:458438-458839 Augustus predicted protein sequence Tobacco scaffold1183_contigs=24~458438-458839 DBD_Tnp_Mut PF03108.10 g42008.t1 - 0.000016 24.3 0 0.00003 23.5 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:14550-16959 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~14550-16959 SH3_1 PF00018.23 g63922.t1 - 0.21 11 0.8 0.33 10.3 0.6 1.3 1 0 0 1 1 1 0 SH3 domain | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:316416-316763 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~316416-316763 DUF3586 PF12131.3 g70337.t1 - 0.061 13.3 0 0.082 12.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3586) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:305793-306703 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~305793-306703 FAM212 PF15342.1 g110387.t1 - 0.029 13.9 0.1 0.036 13.6 0.1 1.2 1 0 0 1 1 1 0 FAM212 family | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:39823-40140 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~39823-40140 DUF4283 PF14111.1 g127271.t1 - 0.00035 19.6 0.1 0.00042 19.4 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:7962-9303 Augustus predicted protein sequence Tobacco scaffold2818_contigs=1~7962-9303 Maf PF02545.9 g88948.t1 - 0.13 11.3 0 0.22 10.6 0 1.4 1 0 0 1 1 1 0 Maf-like protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:275367-276040 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~275367-276040 CAP_N PF01213.14 g76986.t1 - 5.6 6.1 8.8 11 5.1 6.1 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:22687-23190 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~22687-23190 FAM198 PF15051.1 g36111.t1 - 0.064 11.9 0.1 0.088 11.4 0.1 1.2 1 0 0 1 1 1 0 FAM198 protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:292192-292791 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~292192-292791 DUF4280 PF14107.1 g67.t1 - 0.11 12.8 0 0.16 12.3 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4280) | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:30252-30578 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~30252-30578 DUF3893 PF13032.1 g26506.t1 - 0.079 13 0.1 0.095 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:205359-205613 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~205359-205613 Tir_receptor_N PF07490.6 g5302.t1 - 0.14 11.7 0.2 16 5 0 2.2 1 1 1 2 2 2 0 Translocated intimin receptor (Tir) N-terminus | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:11080-12074 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~11080-12074 DUF1515 PF07439.6 g127841.t1 - 0.0064 16.3 0.8 0.0082 15.9 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1515) | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:5503-7066 Augustus predicted protein sequence Tobacco scaffold2839_contigs=1~5503-7066 NSP11 PF06471.7 g36636.t1 - 0.15 10.2 0 0.18 9.9 0 1 1 0 0 1 1 1 0 NSP11 | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:159140-160150 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~159140-160150 Pox_T4_C PF04490.7 g107700.t1 - 0.011 15.4 0.1 1.1 8.9 0 2.1 1 1 1 2 2 2 0 Poxvirus T4 protein, C terminus | Ref_seq=scaffold2405_contigs=11, transcript_loc=scaffold2405_contigs=11:40753-41239 Augustus predicted protein sequence Tobacco scaffold2405_contigs=11~40753-41239 DUF4219 PF13961.1 g63786.t1 - 0.00002 23.8 0.1 0.000031 23.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:80762-81037 Augustus predicted protein sequence Tobacco scaffold1381_contigs=7~80762-81037 Gln-synt_C PF00120.19 g102530.t1 - 0.12 11.5 0.1 0.12 11.4 0.1 1 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:1837-2091 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~1837-2091 Cortexin PF11057.3 g112991.t1 - 0.0034 16.9 0.1 0.0081 15.7 0.1 1.7 1 0 0 1 1 1 1 Cortexin of kidney | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:115577-118059 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~115577-118059 Pox_Rif PF03340.8 g32045.t1 - 0.1 10.6 0 0.12 10.4 0 1 1 0 0 1 1 1 0 Poxvirus rifampicin resistance protein | Ref_seq=scaffold803_contigs=6, transcript_loc=scaffold803_contigs=6:34292-35775 Augustus predicted protein sequence Tobacco scaffold803_contigs=6~34292-35775 DUF3647 PF12363.3 g48044.t1 - 0.082 13 2 1.3 9.1 0.3 2 1 1 1 2 2 2 0 Phage protein | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:22871-23071 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~22871-23071 VGCC_beta4Aa_N PF12052.3 g118016.t1 - 0.022 14.6 0.3 0.031 14.1 0.2 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:49675-50094 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~49675-50094 zf-CCHC PF00098.18 g45084.t1 - 0.00054 19.7 5.3 0.00093 19 3.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:369323-369687 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~369323-369687 DUF1653 PF07866.6 g90974.t1 - 0.11 12.7 0.3 0.19 11.9 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1653) | Ref_seq=scaffold1965_contigs=7, transcript_loc=scaffold1965_contigs=7:108233-108628 Augustus predicted protein sequence Tobacco scaffold1965_contigs=7~108233-108628 WEMBL PF05701.6 g18119.t1 - 0.00034 19.2 7.9 0.036 12.5 1.7 2.1 1 1 1 2 2 2 2 Weak chloroplast movement under blue light | Ref_seq=scaffold545_contigs=3, transcript_loc=scaffold545_contigs=3:17858-18574 Augustus predicted protein sequence Tobacco scaffold545_contigs=3~17858-18574 tRNA-synt_1c PF00749.16 g33341.t1 - 0.11 11.1 0 0.11 11.1 0 1 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:75520-75801 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~75520-75801 Elong_Iki1 PF10483.4 g44856.t1 - 0.025 13.9 0.1 0.027 13.8 0 1 1 0 0 1 1 1 0 Elongator subunit Iki1 | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:19126-21984 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~19126-21984 DUF2509 PF10713.4 g130034.t1 - 0.13 11.9 0 0.2 11.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2509) | Ref_seq=scaffold3339_contigs=1, transcript_loc=scaffold3339_contigs=1:1009-2258 Augustus predicted protein sequence Tobacco scaffold3339_contigs=1~1009-2258 RRN3 PF05327.6 g43394.t1 - 0.4 8.7 3.3 0.38 8.7 2.3 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:141816-143257 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~141816-143257 zf-CCHC PF00098.18 g1617.t1 - 0.0074 16.1 1.2 0.014 15.2 0.9 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:13147-13776 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~13147-13776 DUF605 PF04652.11 g52064.t1 - 3.1 7.1 22.3 3.7 6.8 15.4 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:288725-290579 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~288725-290579 DUF837 PF05769.6 g125975.t1 - 0.099 12.1 0.1 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF837) | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:111160-111462 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~111160-111462 NTPase_P4 PF11602.3 g88554.t1 - 0.09 11.7 0.3 0.1 11.5 0.2 1.1 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:23133-23607 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~23133-23607 AChE_tetra PF08674.5 g27106.t1 - 0.48 9.9 2.8 12 5.4 0.3 2.4 2 0 0 2 2 2 0 Acetylcholinesterase tetramerisation domain | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:103529-104026 Augustus predicted protein sequence Tobacco scaffold721_contigs=12~103529-104026 BLVR PF06375.6 g1770.t1 - 0.004 17 0.5 0.004 16.9 0.4 1 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:129996-130315 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~129996-130315 MTH865 PF07747.6 g23421.t1 - 0.057 13 0 0.076 12.6 0 1.2 1 0 0 1 1 1 0 MTH865-like family | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:7936-8178 Augustus predicted protein sequence Tobacco scaffold645_contigs=7~7936-8178 zf-C2HC PF01530.13 g35637.t1 - 0.053 13.2 0.1 0.078 12.7 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C2HC type | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:259061-259336 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~259061-259336 Ribosomal_S13_N PF08069.7 g14674.t1 - 0.19 11.5 1 0.31 10.9 0.7 1.3 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain | Ref_seq=scaffold480_contigs=8, transcript_loc=scaffold480_contigs=8:80615-83135 Augustus predicted protein sequence Tobacco scaffold480_contigs=8~80615-83135 Cytadhesin_P30 PF07271.6 g100291.t1 - 0.13 11.4 2.1 0.15 11.2 1.5 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold2187_contigs=5, transcript_loc=scaffold2187_contigs=5:234443-236557 Augustus predicted protein sequence Tobacco scaffold2187_contigs=5~234443-236557 Sulf_coat_C PF12193.3 g80056.t1 - 0.098 12.4 0 0.13 12.1 0 1.2 1 0 0 1 1 1 0 Sulfolobus virus coat protein C terminal | Ref_seq=scaffold1708_contigs=4, transcript_loc=scaffold1708_contigs=4:71299-71929 Augustus predicted protein sequence Tobacco scaffold1708_contigs=4~71299-71929 DUF3505 PF12013.3 g83842.t1 - 0.1 12.8 0.1 0.3 11.3 0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3505) | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:18331-18937 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~18331-18937 zf-CCHC PF00098.18 g67374.t1 - 0.0000025 27.1 0.9 0.0000036 26.6 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:166649-167011 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~166649-167011 zf-CCHC PF00098.18 g46555.t1 - 0.00031 20.5 1.3 0.00047 19.9 0.9 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:108182-108520 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~108182-108520 ATHILA PF03078.10 g71760.t1 - 0.011 14.3 0 0.034 12.7 0 1.7 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:50775-51077 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~50775-51077 DUF2647 PF10839.3 g40721.t1 - 0.028 14.4 0.1 0.056 13.5 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:390755-392781 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~390755-392781 zf-C4H2 PF10146.4 g21501.t1 - 0.19 11.7 0.7 0.21 11.5 0.5 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:8052-8465 Augustus predicted protein sequence Tobacco scaffold595_contigs=2~8052-8465 NADH_u_ox_C PF12853.2 g99518.t1 - 0.0087 15.7 0 0.01 15.4 0 1.2 1 0 0 1 1 1 1 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:738340-738630 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~738340-738630 NAD_Gly3P_dh_N PF01210.18 g54997.t1 - 0.11 12.1 0.1 9.4 5.9 0 2 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:321930-323325 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~321930-323325 2Fe-2S_Ferredox PF11591.3 g6139.t1 - 0.077 12.6 0.6 0.19 11.3 0.1 1.9 1 1 1 2 2 2 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:116329-116655 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~116329-116655 SpoVIF PF14069.1 g110190.t1 - 0.14 11.9 0 2 8.1 0 2 2 0 0 2 2 2 0 Stage VI sporulation protein F | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:49602-49904 Augustus predicted protein sequence Tobacco scaffold2530_contigs=9~49602-49904 HmuY PF14064.1 g4121.t1 - 0.065 13.2 0 0.072 13 0 1.2 1 0 0 1 1 1 0 HmuY protein | Ref_seq=scaffold250_contigs=3, transcript_loc=scaffold250_contigs=3:82170-82619 Augustus predicted protein sequence Tobacco scaffold250_contigs=3~82170-82619 zf-CCHC_3 PF13917.1 g78928.t1 - 0.068 12.9 0.1 1.5 8.6 0 2.4 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:46625-47003 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~46625-47003 UPF0370 PF13980.1 g8691.t1 - 0.0029 17.3 0.2 0.0058 16.4 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0370) | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:41690-44759 Augustus predicted protein sequence Tobacco scaffold343_contigs=1~41690-44759 MFP2b PF12150.3 g121062.t1 - 0.039 12.6 0 0.046 12.4 0 1.1 1 0 0 1 1 1 0 Cytosolic motility protein | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:299666-300972 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~299666-300972 Erythro_esteras PF05139.9 g5327.t1 - 0.14 11.2 0 0.25 10.4 0 1.3 2 0 0 2 2 2 0 Erythromycin esterase | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:36188-36742 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~36188-36742 DUF4219 PF13961.1 g11054.t1 - 0.00088 18.6 0 0.0014 18 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:59044-59361 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~59044-59361 HATPase_c PF02518.21 g63360.t1 - 0.049 13.3 0 3.5 7.3 0 2.1 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:34539-34947 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~34539-34947 PNGaseA PF12222.3 g12114.t1 - 0.0073 15.2 0 0.0073 15.2 0 1 1 0 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:77538-77801 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~77538-77801 Gemini_mov PF01708.11 g54303.t1 - 0.12 11.9 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Geminivirus putative movement protein | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:179314-180654 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~179314-180654 Flu_M1 PF00598.14 g51038.t1 - 0.12 11.8 0 0.14 11.5 0 1.1 1 0 0 1 1 1 0 Influenza Matrix protein (M1) | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:238072-238392 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~238072-238392 DUF3515 PF12028.3 g125304.t1 - 0.02 14.1 0.1 0.03 13.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3515) | Ref_seq=scaffold2771_contigs=1, transcript_loc=scaffold2771_contigs=1:96861-97142 Augustus predicted protein sequence Tobacco scaffold2771_contigs=1~96861-97142 HypA PF01155.14 g106765.t1 - 0.019 14.6 0.4 0.019 14.6 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:538628-539335 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~538628-539335 TFIIS_C PF01096.13 g128115.t1 - 0.15 11.6 0 0.28 10.8 0 1.5 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) | Ref_seq=scaffold2850_contigs=1, transcript_loc=scaffold2850_contigs=1:39288-39602 Augustus predicted protein sequence Tobacco scaffold2850_contigs=1~39288-39602 zf-BED PF02892.10 g122335.t1 - 0.0031 17.2 0.1 0.0067 16.1 0 1.6 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2744_contigs=5, transcript_loc=scaffold2744_contigs=5:35009-35628 Augustus predicted protein sequence Tobacco scaffold2744_contigs=5~35009-35628 Dehyd-heme_bind PF09098.5 g58164.t1 - 0.042 13.2 0.2 0.045 13.2 0.1 1 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:130398-131078 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~130398-131078 FH2 PF02181.18 g126358.t1 - 0.029 13.2 0.1 0.061 12.2 0 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:57195-57953 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~57195-57953 UPF0547 PF10571.4 g122269.t1 - 0.027 14.1 0 0.037 13.7 0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:38409-38815 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~38409-38815 Ilar_coat PF01787.11 g43355.t1 - 0.042 13.4 0 0.071 12.6 0 1.4 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:57015-60241 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~57015-60241 VKOR PF07884.9 g51444.t1 - 0.044 13.6 1.7 0.063 13.1 0.5 1.6 2 0 0 2 2 2 0 Vitamin K epoxide reductase family | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:56880-58066 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~56880-58066 Cauli_VI PF01693.11 g6972.t1 - 0.16 12 0.2 0.16 12 0.2 1.6 2 0 0 2 2 2 0 Caulimovirus viroplasmin | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:222643-223590 Augustus predicted protein sequence Tobacco scaffold306_contigs=7~222643-223590 Fer4_11 PF13247.1 g102728.t1 - 0.094 12.6 0.9 0.13 12.1 0.6 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:142435-143766 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~142435-143766 SR-25 PF10500.4 g37459.t1 - 0.0035 16.8 9.5 0.0046 16.4 6.6 1.2 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold926_contigs=6, transcript_loc=scaffold926_contigs=6:234499-235247 Augustus predicted protein sequence Tobacco scaffold926_contigs=6~234499-235247 YqcI_YcgG PF08892.6 g34549.t1 - 0.069 12.7 0.4 0.082 12.4 0.3 1.1 1 0 0 1 1 1 0 YqcI/YcgG family | Ref_seq=scaffold856_contigs=3, transcript_loc=scaffold856_contigs=3:74305-74610 Augustus predicted protein sequence Tobacco scaffold856_contigs=3~74305-74610 ER-remodelling PF14755.1 g8994.t1 - 0.024 14.7 0.1 0.03 14.4 0 1.1 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:12530-13176 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~12530-13176 RAM PF15320.1 g86994.t1 - 3.3 8 6.8 2.5 8.4 0.1 2.3 2 0 0 2 2 2 0 mRNA cap methylation, RNMT-activating mini protein | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:489948-491182 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~489948-491182 UBN2 PF14223.1 g51959.t1 - 0.11 12.2 0 0.13 12 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:53903-54205 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~53903-54205 Daxx PF03344.10 g118215.t1 - 0.044 12.2 29.9 0.044 12.2 20.7 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:109219-109509 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~109219-109509 ERCC4 PF02732.10 g21515.t1 - 0.058 13.1 0.2 0.08 12.7 0.2 1.3 1 0 0 1 1 1 0 ERCC4 domain | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:36492-38431 Augustus predicted protein sequence Tobacco scaffold595_contigs=2~36492-38431 Med15 PF09606.5 g74316.t1 - 0.54 8.3 1.7 0.76 7.9 1.2 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal | Ref_seq=scaffold1553_contigs=6, transcript_loc=scaffold1553_contigs=6:4739-8532 Augustus predicted protein sequence Tobacco scaffold1553_contigs=6~4739-8532 HALZ PF02183.13 g82379.t1 - 0.0053 16.4 8.7 0.15 11.7 1.7 2.8 1 1 0 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:380357-380821 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~380357-380821 DUF3094 PF11293.3 g795.t1 - 0.0056 16.1 0 5.4 6.5 0 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF3094) | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:57988-58350 Augustus predicted protein sequence Tobacco scaffold52_contigs=2~57988-58350 CLCA_N PF08434.6 g91056.t1 - 0.37 9.9 3.3 0.33 10.1 1.4 1.5 2 0 0 2 2 2 0 Calcium-activated chloride channel | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:30998-32616 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~30998-32616 Selenoprotein_S PF06936.6 g10366.t1 - 0.31 10.5 2.4 0.37 10.3 1.7 1.1 1 0 0 1 1 1 0 Selenoprotein S (SelS) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:197921-198166 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~197921-198166 DMPK_coil PF08826.5 g91512.t1 - 0.042 13.7 0.8 0.15 11.9 0.1 2 2 0 0 2 2 2 0 DMPK coiled coil domain like | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:151576-152581 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~151576-152581 Vps39_2 PF10367.4 g54242.t1 - 0.11 12.6 2.3 0.16 12.1 0.5 1.8 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:74572-75152 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~74572-75152 7tm_2 PF00002.19 g23321.t1 - 0.14 11.2 0 0.15 11 0 1.1 1 0 0 1 1 1 0 7 transmembrane receptor (Secretin family) | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:114300-114566 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~114300-114566 DZR PF12773.2 g106800.t1 - 7.2 6.5 14.2 2.7 7.8 7 2 2 0 0 2 2 2 0 Double zinc ribbon | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:606432-606770 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~606432-606770 zf-C2H2_6 PF13912.1 g32946.t1 - 0.68 9.9 4.4 10 6.1 0.3 2.7 3 0 0 3 3 3 0 C2H2-type zinc finger | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:22439-22831 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~22439-22831 LBR_tudor PF09465.5 g85079.t1 - 0.12 11.9 0.1 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:169526-170216 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~169526-170216 Bac_DnaA_C PF08299.6 g89482.t1 - 0.05 13.4 0.2 0.22 11.3 0 1.9 1 1 0 2 2 2 0 Bacterial dnaA protein helix-turn-helix | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:19357-19620 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~19357-19620 PsiF_repeat PF07769.9 g61661.t1 - 0.0042 16.6 1.4 0.0064 16 1 1.3 1 0 0 1 1 1 1 psiF repeat | Ref_seq=scaffold1339_contigs=6, transcript_loc=scaffold1339_contigs=6:75984-76490 Augustus predicted protein sequence Tobacco scaffold1339_contigs=6~75984-76490 DUF1233 PF06806.7 g24756.t1 - 0.085 12.4 0.1 0.15 11.6 0 1.4 1 0 0 1 1 1 0 Putative excisionase (DUF1233) | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:34197-34946 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~34197-34946 DUF3859 PF12975.2 g102314.t1 - 0.0044 16.6 0.2 0.72 9.5 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3859) | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:8717-9882 Augustus predicted protein sequence Tobacco scaffold2237_contigs=22~8717-9882 SH3BP5 PF05276.9 g92687.t1 - 0.018 14.3 1 14 4.8 0.1 2.9 1 1 2 3 3 3 0 SH3 domain-binding protein 5 (SH3BP5) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:295718-299364 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~295718-299364 DUF2651 PF10852.3 g41707.t1 - 0.0068 16.7 0 2 8.8 0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2651) | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:111-1609 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~111-1609 Med13_C PF06333.7 g23693.t1 - 0.4 9.1 5.8 0.51 8.8 4 1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:434870-435397 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~434870-435397 DUF2011 PF09428.5 g100124.t1 - 0.02 14.7 4.7 0.022 14.6 3.3 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2011) | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:98695-98988 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~98695-98988 TRA-1_regulated PF02343.11 g93713.t1 - 0.039 13.4 0.5 0.04 13.4 0.3 1.1 1 0 0 1 1 1 0 TRA-1 regulated protein R03H10.4 | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:414309-414518 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~414309-414518 zf-CCHC PF00098.18 g80422.t1 - 0.00094 18.9 0.7 0.00094 18.9 0.5 2 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:223165-223368 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~223165-223368 HALZ PF02183.13 g1723.t1 - 0.019 14.6 10 0.81 9.4 2.3 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:27984-28547 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~27984-28547 BTK PF00779.14 g110162.t1 - 0.025 14.2 0.9 0.049 13.2 0.6 1.5 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold2527_contigs=1, transcript_loc=scaffold2527_contigs=1:35469-36048 Augustus predicted protein sequence Tobacco scaffold2527_contigs=1~35469-36048 FCH PF00611.18 g39574.t1 - 0.018 15.2 0.2 0.024 14.7 0.1 1.2 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:105140-105457 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~105140-105457 NicO PF03824.11 g103911.t1 - 0.032 13.5 2.8 0.031 13.5 2 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:210-437 Augustus predicted protein sequence Tobacco scaffold2321_contigs=13~210-437 RVP_2 PF08284.6 g81455.t1 - 0.0000019 27.8 0 0.0000022 27.6 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:31370-31588 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~31370-31588 DUF1347 PF07079.6 g125329.t1 - 0.028 12.6 0.2 0.06 11.5 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:41180-42532 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~41180-42532 DNA_pol_B_3 PF08408.5 g71460.t1 - 0.14 12 0.1 0.23 11.3 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase family B viral insert | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:77628-79009 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~77628-79009 Phage_integrase PF00589.17 g120493.t1 - 0.13 11.9 0 0.14 11.7 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:427231-428069 Augustus predicted protein sequence Tobacco scaffold2724_contigs=11~427231-428069 NPV_P10 PF05531.7 g127913.t1 - 0.011 15.9 0 0.11 12.6 0 2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:51023-52256 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~51023-52256 Svf1 PF08622.5 g123689.t1 - 0.11 11.4 0 0.13 11.2 0 1.1 1 0 0 1 1 1 0 Svf1-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:316614-317267 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~316614-317267 Muted PF14942.1 g67016.t1 - 0.0075 16.1 3.4 0.0099 15.7 2.4 1.1 1 0 0 1 1 1 1 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:355421-355879 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~355421-355879 DUF3987 PF13148.1 g71646.t1 - 0.047 12.2 0.7 0.068 11.7 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:214662-215353 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~214662-215353 DUF1204 PF06721.6 g53308.t1 - 0.15 11.2 6.2 0.038 13.2 0.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1204) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:56409-56816 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~56409-56816 DUF2457 PF10446.4 g49753.t1 - 0.00026 19.8 11.1 0.00026 19.8 7.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:85132-85401 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~85132-85401 Myc_N PF01056.13 g100924.t1 - 0.031 13.4 1.7 0.033 13.3 1.2 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:350472-350720 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~350472-350720 Acyl-CoA_dh_M PF02770.14 g77333.t1 - 0.14 11.6 0 0.25 10.8 0 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:330672-331390 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~330672-331390 Glycoamylase PF10091.4 g107613.t1 - 0.024 13.6 0.2 0.027 13.5 0.1 1 1 0 0 1 1 1 0 Putative glucoamylase | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:70835-71158 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~70835-71158 YjbR PF04237.8 g68096.t1 - 0.031 14.6 0.3 0.1 12.9 0 2 3 0 0 3 3 3 0 YjbR | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:122873-124043 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~122873-124043 Ecm29 PF13001.2 g81545.t1 - 0.013 13.9 0.2 0.016 13.7 0.1 1 1 0 0 1 1 1 0 Proteasome stabiliser | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:210691-211083 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~210691-211083 PP1c_bdg PF10488.4 g74843.t1 - 0.012 14.8 0.5 0.43 9.7 0 2.1 2 0 0 2 2 2 0 Phosphatase-1 catalytic subunit binding region | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:188062-188427 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~188062-188427 FGF-BP1 PF06473.7 g55457.t1 - 1.3 8.5 5.2 1.5 8.4 3.6 1.1 1 0 0 1 1 1 0 FGF binding protein 1 (FGF-BP1) | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:201565-203899 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~201565-203899 DUF3563 PF12086.3 g81705.t1 - 0.037 13.7 0.3 0.1 12.3 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3563) | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:9039-9800 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~9039-9800 VLPT PF07122.6 g108946.t1 - 0.016 14.8 5.8 0.18 11.5 0 3.4 4 0 0 4 4 4 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold2458_contigs=3, transcript_loc=scaffold2458_contigs=3:30110-30553 Augustus predicted protein sequence Tobacco scaffold2458_contigs=3~30110-30553 DUF4144 PF13642.1 g65122.t1 - 0.032 14.5 1.6 0.048 14 0.7 1.5 1 1 0 1 1 1 0 protein structure with unknown function | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:104110-104532 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~104110-104532 Usp PF00582.21 g41814.t1 - 0.088 12.9 0 0.12 12.6 0 1.2 1 0 0 1 1 1 0 Universal stress protein family | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:39780-40156 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~39780-40156 L31 PF09784.4 g130478.t1 - 0.017 15.2 0 0.017 15.2 0 1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L31 | Ref_seq=scaffold4663_contigs=1, transcript_loc=scaffold4663_contigs=1:1-621 Augustus predicted protein sequence Tobacco scaffold4663_contigs=1~1-621 TRI9 PF08195.6 g52686.t1 - 0.0094 15.5 0.5 0.35 10.5 0 2.4 2 0 0 2 2 2 2 TRI9 protein | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:644663-645004 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~644663-645004 Spc7 PF08317.6 g23293.t1 - 0.015 13.9 1.4 0.021 13.4 1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:57337-59476 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~57337-59476 Cwf_Cwc_15 PF04889.7 g16986.t1 - 0.32 10.6 6.1 0.51 10 4.3 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:201458-202741 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~201458-202741 ATHILA PF03078.10 g56298.t1 - 0.0006 18.5 0.1 0.013 14 0 2.4 2 1 1 3 3 3 2 ATHILA ORF-1 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:398054-398748 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~398054-398748 DUF3729 PF12526.3 g90942.t1 - 0.8 11 3.9 0.57 11.5 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3729) | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:220758-221468 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~220758-221468 DUF3226 PF11536.3 g119128.t1 - 0.0067 15.9 0.5 0.007 15.8 0.3 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:985707-986176 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~985707-986176 NAM-associated PF14303.1 g29041.t1 - 0.00013 22.2 2.5 0.00017 21.9 1.7 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold755_contigs=20, transcript_loc=scaffold755_contigs=20:47079-48786 Augustus predicted protein sequence Tobacco scaffold755_contigs=20~47079-48786 KIP1 PF07765.7 g15398.t1 - 0.04 13.7 2 0.11 12.3 1.4 1.8 1 0 0 1 1 1 0 KIP1-like protein | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:237627-238809 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~237627-238809 DASH_Dad2 PF08654.5 g108836.t1 - 0.00016 21.6 0 0.00019 21.3 0 1.1 1 0 0 1 1 1 1 DASH complex subunit Dad2 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:342533-342769 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~342533-342769 RVT_3 PF13456.1 g120860.t1 - 0.1 12.3 0 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:357625-358581 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~357625-358581 CAF1-p150_C2 PF15539.1 g124680.t1 - 0.24 10.4 1.6 0.25 10.4 0.1 1.6 2 0 0 2 2 2 0 CAF1 complex subunit p150, region binding to CAF1-p60 at C-term | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:267118-268054 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~267118-268054 ATHILA PF03078.10 g125116.t1 - 0.03 12.9 0 0.03 12.9 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:122776-123000 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~122776-123000 Toxin_YhaV PF11663.3 g128682.t1 - 0.67 9.6 3.1 0.83 9.3 2.1 1.3 1 0 0 1 1 1 0 Toxin with endonuclease activity YhaV | Ref_seq=scaffold2881_contigs=1, transcript_loc=scaffold2881_contigs=1:26382-26651 Augustus predicted protein sequence Tobacco scaffold2881_contigs=1~26382-26651 DUF3256 PF11644.3 g92270.t1 - 0.029 13.8 0 0.034 13.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3256) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:168492-168839 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~168492-168839 DUF3072 PF11272.3 g84621.t1 - 0.07 12.7 0 0.11 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3072) | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:98943-99272 Augustus predicted protein sequence Tobacco scaffold1824_contigs=4~98943-99272 DUF869 PF05911.6 g48856.t1 - 0.000019 23.1 0.3 0.000022 22.9 0.2 1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:498987-499948 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~498987-499948 WASH-7_C PF14746.1 g75704.t1 - 0.076 12.6 0 0.085 12.4 0 1.1 1 0 0 1 1 1 0 WASH complex subunit 7, C-terminal | Ref_seq=scaffold1579_contigs=3, transcript_loc=scaffold1579_contigs=3:49627-50591 Augustus predicted protein sequence Tobacco scaffold1579_contigs=3~49627-50591 KAAG1 PF15354.1 g3795.t1 - 0.0021 18.3 0.1 0.026 14.8 0 2 2 0 0 2 2 2 1 Kidney-associated antigen 1 | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:27822-28347 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~27822-28347 THOC7 PF05615.8 g26352.t1 - 0.039 14.2 1.1 0.064 13.5 0.2 1.8 1 1 0 1 1 1 0 Tho complex subunit 7 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:154318-154650 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~154318-154650 zf-BED PF02892.10 g117836.t1 - 0.014 15.1 1.9 0.015 15 0.3 1.8 2 0 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:82336-83740 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~82336-83740 End3 PF12761.2 g28574.t1 - 0.0053 16.4 0.1 0.0089 15.6 0.1 1.4 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:215776-217051 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~215776-217051 U79_P34 PF03064.11 g63990.t1 - 0.34 10.4 12.4 0.42 10 8.6 1.1 1 0 0 1 1 1 0 HSV U79 / HCMV P34 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:92733-93239 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~92733-93239 HAT PF02184.11 g106959.t1 - 0.038 13.7 0.8 0.12 12.1 0.2 2 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:133583-133942 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~133583-133942 L_lac_phage_MSP PF06488.6 g28973.t1 - 0.036 13.1 0 0.036 13.1 0 1.1 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major structural protein | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:124843-125250 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~124843-125250 DUF2570 PF10828.3 g58458.t1 - 0.061 12.9 0.9 0.072 12.7 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:85846-86151 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~85846-86151 TFIIF_alpha PF05793.7 g70172.t1 - 1 7.6 15.2 1.1 7.5 10.6 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:10760-11194 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~10760-11194 DUF3079 PF11278.3 g19813.t1 - 0.048 13.2 1.1 0.1 12.1 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3079) | Ref_seq=scaffold574_contigs=11, transcript_loc=scaffold574_contigs=11:81225-81710 Augustus predicted protein sequence Tobacco scaffold574_contigs=11~81225-81710 Retrotrans_gag PF03732.12 g96724.t1 - 0.00024 21.1 0 0.00042 20.3 0 1.4 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:232994-233269 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~232994-233269 UPF0560 PF10577.4 g29853.t1 - 2.7 6.1 6.8 3.2 5.8 4.7 1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:265123-265691 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~265123-265691 HMG_box_5 PF14887.1 g99937.t1 - 0.07 12.9 0.2 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 HMG (high mobility group) box 5 | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:167970-168233 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~167970-168233 Herpes_DNAp_acc PF04929.7 g91862.t1 - 0.64 8.9 3.9 0.79 8.6 2.7 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold1980_contigs=4, transcript_loc=scaffold1980_contigs=4:147688-149098 Augustus predicted protein sequence Tobacco scaffold1980_contigs=4~147688-149098 NDUF_B8 PF05821.6 g115332.t1 - 0.078 12.6 2.2 0.13 11.9 1.5 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:100457-100951 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~100457-100951 DUF641 PF04859.7 g65519.t1 - 0.0081 15.9 3.6 0.013 15.2 2.3 1.6 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1416_contigs=2, transcript_loc=scaffold1416_contigs=2:4820-5461 Augustus predicted protein sequence Tobacco scaffold1416_contigs=2~4820-5461 Trypan_PARP PF05887.6 g122507.t1 - 2.1 8.1 12.1 3.3 7.5 8.4 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:150387-150770 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~150387-150770 Pho88 PF10032.4 g65369.t1 - 0.01 15 0.1 0.011 14.8 0.1 1.1 1 0 0 1 1 1 0 Phosphate transport (Pho88) | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:125824-126352 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~125824-126352 Cadherin_pro PF08758.6 g16073.t1 - 0.14 11.9 0.5 0.28 10.9 0.4 1.6 1 1 0 1 1 1 0 Cadherin prodomain like | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:247835-248424 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~247835-248424 Glyco_hydro_cc PF11790.3 g130036.t1 - 0.012 15 0 0.015 14.7 0 1.2 1 1 0 1 1 1 0 Glycosyl hydrolase catalytic core | Ref_seq=scaffold3342_contigs=1, transcript_loc=scaffold3342_contigs=1:2577-3178 Augustus predicted protein sequence Tobacco scaffold3342_contigs=1~2577-3178 DUF2285 PF10074.4 g101288.t1 - 0.0055 17 0.6 0.0099 16.2 0.4 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2285) | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:181560-182255 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~181560-182255 Sporozoite_P67 PF05642.6 g58392.t1 - 3.5 5.3 4.7 3.6 5.3 3.3 1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:376672-376893 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~376672-376893 Lentiviral_Tat PF02998.9 g51516.t1 - 0.042 13.6 0.5 0.11 12.3 0 1.8 2 0 0 2 2 2 0 Lentiviral Tat protein | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:6170-6901 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~6170-6901 Transposase_28 PF04195.7 g104419.t1 - 0.042 13.1 0.1 0.074 12.3 0 1.4 1 1 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:77931-78185 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~77931-78185 DUF2205 PF10224.4 g111467.t1 - 0.015 14.8 0.2 0.02 14.4 0.1 1.2 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:584054-584588 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~584054-584588 zf-CCHC PF00098.18 g10431.t1 - 0.00027 20.7 1.5 0.00041 20.1 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:340883-341470 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~340883-341470 DUF591 PF04569.9 g58931.t1 - 0.08 12.9 1.1 0.12 12.4 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:247225-249756 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~247225-249756 DUF1601 PF07671.6 g8223.t1 - 0.95 9.1 3.2 4.4 7 0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1601) | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:19571-20193 Augustus predicted protein sequence Tobacco scaffold332_contigs=3~19571-20193 Rod_C PF10493.4 g25625.t1 - 0.12 10.6 0 0.21 9.8 0 1.3 1 0 0 1 1 1 0 Rough deal protein C-terminal region | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:130694-131461 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~130694-131461 zf-CCHC PF00098.18 g49356.t1 - 0.044 13.7 1.2 0.1 12.5 0.8 1.7 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:130355-131708 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~130355-131708 PRCC PF10253.4 g44957.t1 - 0.076 13.7 0.1 0.12 13 0.1 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:87687-90383 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~87687-90383 Tom22 PF04281.8 g28795.t1 - 0.025 14.1 1.2 0.032 13.7 0.8 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:282475-282816 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~282475-282816 MULE PF10551.4 g46075.t1 - 0.0079 16.3 0 0.023 14.8 0 1.7 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:29427-32431 Augustus predicted protein sequence Tobacco scaffold1054_contigs=13~29427-32431 GVQW PF13900.1 g88437.t1 - 0.083 12.8 0.2 0.48 10.4 0 2 2 0 0 2 2 2 0 Putative binding domain | Ref_seq=scaffold1927_contigs=30, transcript_loc=scaffold1927_contigs=30:116644-116958 Augustus predicted protein sequence Tobacco scaffold1927_contigs=30~116644-116958 Cwf_Cwc_15 PF04889.7 g23872.t1 - 0.0091 15.7 1.3 0.0099 15.6 0.9 1.1 1 0 0 1 1 1 1 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:272297-272518 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~272297-272518 Hpt PF01627.18 g35483.t1 - 0.039 13.9 0 0.091 12.7 0 1.6 1 0 0 1 1 1 0 Hpt domain | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:210875-212076 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~210875-212076 AAA_13 PF13166.1 g123546.t1 - 0.00076 18 0.7 0.0009 17.8 0.5 1.1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:139244-145303 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~139244-145303 FlaC_arch PF05377.6 g126220.t1 - 0.0038 17 0.1 0.011 15.5 0.1 1.8 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:84865-86149 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~84865-86149 zf-C3HC4_3 PF13920.1 g58150.t1 - 0.078 12.6 1.2 0.13 12 0.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:57357-57732 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~57357-57732 DUF3839 PF12943.2 g55919.t1 - 0.053 12.6 0 0.069 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:130486-130803 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~130486-130803 HAUS-augmin3 PF14932.1 g16862.t1 - 0.00011 21.4 9 0.00015 21 6.2 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:37646-38270 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~37646-38270 BCNT PF07572.7 g69116.t1 - 0.1 12.5 0 0.17 11.8 0 1.4 1 1 0 1 1 1 0 Bucentaur or craniofacial development | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:497641-498006 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~497641-498006 Defensin_beta PF00711.14 g30121.t1 - 0.0031 17.4 0.7 0.052 13.4 0.5 2.1 1 1 0 1 1 1 1 Beta defensin | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:496916-497209 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~496916-497209 Trypan_PARP PF05887.6 g111728.t1 - 1.5 8.6 12.7 1.7 8.4 8.8 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:67065-67439 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~67065-67439 DUF2252 PF10009.4 g31208.t1 - 0.081 11.8 0 0.09 11.6 0 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:12788-14694 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~12788-14694 LCD1 PF09798.4 g88574.t1 - 0.075 11 3.6 0.078 10.9 2.5 1 1 0 0 1 1 1 0 DNA damage checkpoint protein | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:72676-73572 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~72676-73572 ATHILA PF03078.10 g37909.t1 - 0.00036 19.2 0 0.0012 17.5 0 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:238625-239345 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~238625-239345 RVT_3 PF13456.1 g45035.t1 - 0.00017 21.2 0.1 0.00031 20.4 0.1 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:274567-274875 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~274567-274875 FAR1 PF03101.10 g14175.t1 - 0.0028 18.1 0.1 0.029 14.8 0 2.1 2 0 0 2 2 2 1 FAR1 DNA-binding domain | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:250705-252869 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~250705-252869 DUF1985 PF09331.6 g66386.t1 - 0.076 12.8 0 0.14 11.9 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1439_contigs=3, transcript_loc=scaffold1439_contigs=3:65500-67179 Augustus predicted protein sequence Tobacco scaffold1439_contigs=3~65500-67179 PCMT PF01135.14 g93036.t1 - 0.1 12.1 0 0.11 11.9 0 1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:546973-547176 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~546973-547176 SLEI_Leptospira PF07620.6 g97500.t1 - 0.13 12.1 0.1 0.21 11.4 0 1.3 1 0 0 1 1 1 0 SLEI | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:251265-251489 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~251265-251489 Phage_integrase PF00589.17 g129854.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:2251-2595 Augustus predicted protein sequence Tobacco scaffold3123_contigs=1~2251-2595 DUF1216 PF06746.6 g33319.t1 - 0.1 12.3 0.3 0.15 11.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1216) | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:35986-36291 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~35986-36291 HycI PF01750.13 g121203.t1 - 0.089 12.3 0 0.16 11.5 0 1.4 1 0 0 1 1 1 0 Hydrogenase maturation protease | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:216466-217284 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~216466-217284 Med2 PF11214.3 g102674.t1 - 0.034 14.1 0 0.06 13.3 0 1.5 1 1 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:34995-36300 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~34995-36300 Herpes_U30 PF04523.8 g16661.t1 - 0.14 9.5 0.5 0.15 9.5 0.3 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:15837-16067 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~15837-16067 SH3_6 PF12913.2 g106221.t1 - 0.068 12.4 0.3 0.46 9.7 0.1 2.2 1 1 1 2 2 2 0 SH3 domain of the SH3b1 type | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:179686-179919 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~179686-179919 DUF917 PF06032.7 g61869.t1 - 0.097 11.1 0 0.91 7.9 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF917) | Ref_seq=scaffold1343_contigs=14, transcript_loc=scaffold1343_contigs=14:430085-430524 Augustus predicted protein sequence Tobacco scaffold1343_contigs=14~430085-430524 CENP-F_leu_zip PF10473.4 g29261.t1 - 0.023 14.5 7.5 0.53 10.1 1.1 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:102333-102941 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~102333-102941 Tim54 PF11711.3 g94649.t1 - 6.4 5.2 10 0.34 9.4 2.9 1.6 2 0 0 2 2 2 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:229729-231148 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~229729-231148 Cut8_N PF14482.1 g81390.t1 - 0.039 13.9 3 0.62 10.1 0.9 3 2 0 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:144631-146138 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~144631-146138 PA-IL PF07828.7 g117301.t1 - 0.084 12.6 0.1 0.4 10.4 0 2 2 0 0 2 2 2 0 PA-IL-like protein | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:99499-100854 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~99499-100854 DUF4600 PF15372.1 g18498.t1 - 0.0012 19.1 0.5 0.18 12 0 2 1 1 1 2 2 2 2 Domain of unknown function (DUF4600) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:123150-123739 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~123150-123739 zf-CCHC PF00098.18 g5810.t1 - 0.00081 19.2 0.8 0.0014 18.4 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:19405-19938 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~19405-19938 B-block_TFIIIC PF04182.7 g86763.t1 - 0.022 14.5 0.1 1 9.2 0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:80601-81348 Augustus predicted protein sequence Tobacco scaffold1861_contigs=7~80601-81348 DUF1985 PF09331.6 g87075.t1 - 0.048 13.4 0 0.05 13.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:78907-79227 Augustus predicted protein sequence Tobacco scaffold1866_contigs=5~78907-79227 zf-BED PF02892.10 g101230.t1 - 0.045 13.5 0.8 0.068 12.9 0.5 1.3 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:59787-60754 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~59787-60754 V_ATPase_I PF01496.14 g46020.t1 - 0.023 12.5 1 0.026 12.3 0.7 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:320377-321467 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~320377-321467 AF-4 PF05110.8 g93225.t1 - 7.3 4.3 14.8 8.4 4.1 10.3 1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:143954-144996 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~143954-144996 DUF591 PF04569.9 g72140.t1 - 0.048 13.7 0.4 0.048 13.7 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:349364-350361 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~349364-350361 DUF1589 PF07628.6 g5085.t1 - 0.062 13.2 0.3 0.076 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1589) | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:285368-285871 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~285368-285871 DUF4319 PF14203.1 g114726.t1 - 0.12 11.8 0 0.2 11.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:17585-17944 Augustus predicted protein sequence Tobacco scaffold2654_contigs=6~17585-17944 CAP_N PF01213.14 g12118.t1 - 0.02 14.2 0.4 0.023 13.9 0.3 1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold422_contigs=2, transcript_loc=scaffold422_contigs=2:83504-83818 Augustus predicted protein sequence Tobacco scaffold422_contigs=2~83504-83818 Met_gamma_lyase PF06838.6 g114549.t1 - 0.023 12.9 0.3 0.025 12.8 0.2 1 1 0 0 1 1 1 0 Methionine gamma-lyase | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:9998-10465 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~9998-10465 DUF3429 PF11911.3 g122593.t1 - 0.028 14.4 0.4 0.04 13.9 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3429) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:343118-346106 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~343118-346106 DUF1540 PF07561.6 g77003.t1 - 0.082 12.9 0 0.43 10.6 0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1540) | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:56445-56948 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~56445-56948 Cas_CT1975 PF09344.5 g80352.t1 - 0.12 11.7 0 0.13 11.5 0 1 1 0 0 1 1 1 0 CT1975-like protein | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:116819-117088 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~116819-117088 Flg_hook PF02120.11 g30690.t1 - 0.06 13 0 0.096 12.3 0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:59403-59819 Augustus predicted protein sequence Tobacco scaffold778_contigs=11~59403-59819 Adenosine_kin PF04008.9 g26185.t1 - 0.058 12.8 0.2 0.087 12.3 0.1 1.3 1 1 0 1 1 1 0 Adenosine specific kinase | Ref_seq=scaffold711_contigs=2, transcript_loc=scaffold711_contigs=2:75988-78096 Augustus predicted protein sequence Tobacco scaffold711_contigs=2~75988-78096 KorB_C PF06613.6 g117154.t1 - 0.0027 17.1 0.1 2.6 7.5 0 2.4 2 0 0 2 2 2 2 KorB C-terminal beta-barrel domain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:49219-49776 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~49219-49776 Oxysterol_BP PF01237.13 g21136.t1 - 0.0083 14.6 3.2 0.0096 14.4 2.2 1.1 1 0 0 1 1 1 1 Oxysterol-binding protein | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:41671-42285 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~41671-42285 DUF2290 PF10053.4 g94017.t1 - 0.06 12.6 0.1 0.06 12.6 0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2290) | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:419005-419391 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~419005-419391 MerR-DNA-bind PF09278.6 g62416.t1 - 0.03 14.7 0.4 0.03 14.7 0.3 3.3 3 2 1 4 4 4 0 MerR, DNA binding | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:182048-184619 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~182048-184619 NADH_Oxid_Nqo15 PF11497.3 g31811.t1 - 0.046 13.4 0.2 0.24 11.1 0 1.9 1 1 0 2 2 2 0 NADH-quinone oxidoreductase chain 15 | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:78557-79794 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~78557-79794 CDC24 PF06395.6 g57197.t1 - 0.023 14.7 0.2 0.036 14.1 0.2 1.4 1 1 0 1 1 1 0 CDC24 Calponin | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:770934-771748 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~770934-771748 DUF2694 PF10904.3 g92896.t1 - 0.027 14.4 0.1 0.057 13.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:136470-137147 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~136470-137147 JHBP PF06585.6 g35474.t1 - 0.14 10.9 0 0.16 10.8 0 1.1 1 0 0 1 1 1 0 Haemolymph juvenile hormone binding protein (JHBP) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:184694-184954 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~184694-184954 Pollen_Ole_e_I PF01190.12 g22313.t1 - 0.0018 18 0 0.0024 17.6 0 1.1 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:109003-109437 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~109003-109437 OAD_gamma PF04277.8 g64399.t1 - 0.033 14.5 0.5 0.058 13.7 0.1 1.6 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:173734-174271 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~173734-174271 Dppa2_A PF14049.1 g88810.t1 - 0.027 14.2 0.4 0.33 10.8 0 2 2 0 0 2 2 2 0 Dppa2/4 conserved region in higher vertebrates | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:73186-73542 Augustus predicted protein sequence Tobacco scaffold1936_contigs=10~73186-73542 zf-RVT PF13966.1 g40845.t1 - 0.000026 24.4 0 0.000047 23.6 0 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:51761-52481 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~51761-52481 ER-remodelling PF14755.1 g93178.t1 - 0.005 16.9 0.4 0.005 16.9 0.2 1 1 0 0 1 1 1 1 Intracellular membrane remodeller | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:1-106 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~1-106 Tir_receptor_C PF07489.6 g56429.t1 - 0.0071 16.1 0.9 0.0074 16 0.6 1.1 1 0 0 1 1 1 1 Translocated intimin receptor (Tir) C-terminus | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:118072-118299 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~118072-118299 HTH_12 PF08461.5 g43684.t1 - 0.016 14.8 0.2 0.057 13.1 0.2 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:414037-415046 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~414037-415046 Endotoxin_M PF00555.14 g24404.t1 - 0.051 13.3 0.3 0.054 13.3 0.2 1.1 1 0 0 1 1 1 0 delta endotoxin | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:129831-130133 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~129831-130133 M3 PF09213.5 g95272.t1 - 0.028 12.8 0 0.033 12.6 0 1.1 1 0 0 1 1 1 0 M3 | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:487676-488484 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~487676-488484 Phage_Gp23 PF10669.4 g29570.t1 - 0.7 10 3.6 1.6 8.8 2.5 1.6 1 1 0 1 1 1 0 Protein gp23 (Bacteriophage A118) | Ref_seq=scaffold761_contigs=1, transcript_loc=scaffold761_contigs=1:25254-25676 Augustus predicted protein sequence Tobacco scaffold761_contigs=1~25254-25676 UBN2 PF14223.1 g36982.t1 - 0.000034 23.6 0 0.000039 23.4 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:42518-42796 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~42518-42796 Rubella_Capsid PF05750.6 g73882.t1 - 0.31 10.3 7.3 0.31 10.3 5 1.1 1 0 0 1 1 1 0 Rubella capsid protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:123766-124478 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~123766-124478 CcdB PF01845.12 g17651.t1 - 0.11 12.4 0 17 5.4 0 2.1 2 0 0 2 2 2 0 CcdB protein | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:10537-11252 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~10537-11252 Cortex-I_coil PF09304.5 g126143.t1 - 0.0034 17.3 0.7 0.0041 17.1 0.5 1.2 1 0 0 1 1 1 1 Cortexillin I, coiled coil | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:69960-70229 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~69960-70229 DUF3146 PF11344.3 g52515.t1 - 0.089 12.2 0 0.12 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3146) | Ref_seq=scaffold1180_contigs=1, transcript_loc=scaffold1180_contigs=1:10794-11116 Augustus predicted protein sequence Tobacco scaffold1180_contigs=1~10794-11116 QLQ PF08880.6 g21742.t1 - 0.021 14.2 0.7 0.52 9.7 0.1 2.7 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:57090-57841 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~57090-57841 NAM-associated PF14303.1 g101547.t1 - 0.00000029 30.9 0.3 0.00000034 30.6 0.2 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:286572-287998 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~286572-287998 Ribosomal_L23eN PF03939.8 g97881.t1 - 0.11 12.5 0 0.15 12 0 1.2 1 0 0 1 1 1 0 Ribosomal protein L23, N-terminal domain | Ref_seq=scaffold2146_contigs=11, transcript_loc=scaffold2146_contigs=11:124255-124560 Augustus predicted protein sequence Tobacco scaffold2146_contigs=11~124255-124560 Succ_CoA_lig PF13607.1 g44392.t1 - 0.012 15.2 0 0.017 14.7 0 1.2 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:435598-436053 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~435598-436053 HPD PF05044.7 g83213.t1 - 0.033 13.8 0.2 0.039 13.6 0.1 1.1 1 0 0 1 1 1 0 Homeo-prospero domain | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:359812-361195 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~359812-361195 Angiomotin_C PF12240.3 g41207.t1 - 0.059 12.8 0.3 0.068 12.6 0.2 1.2 1 1 0 1 1 1 0 Angiomotin C terminal | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:15520-16484 Augustus predicted protein sequence Tobacco scaffold985_contigs=1~15520-16484 ATHILA PF03078.10 g49665.t1 - 0.000036 22.5 0 0.0011 17.5 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:22354-22725 Augustus predicted protein sequence Tobacco scaffold1132_contigs=4~22354-22725 NUDE_C PF04880.8 g27657.t1 - 0.014 15.7 0.8 0.018 15.4 0.5 1.2 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:50635-51024 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~50635-51024 IL6Ra-bind PF09240.5 g84884.t1 - 0.097 12.8 0 0.12 12.5 0 1.1 1 0 0 1 1 1 0 Interleukin-6 receptor alpha chain, binding | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:10027-10353 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~10027-10353 Ribosomal_L18ae PF01775.12 g50020.t1 - 0.15 11.9 2 0.17 11.7 1.4 1.2 1 0 0 1 1 1 0 Ribosomal L18ae/LX protein domain | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:67368-67568 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~67368-67568 DUF2216 PF10226.4 g85364.t1 - 0.15 11.5 0.9 0.23 10.9 0.4 1.4 1 1 0 1 1 1 0 Uncharacterized conserved proteins (DUF2216) | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:296905-297276 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~296905-297276 Myotoxins PF00819.12 g22182.t1 - 0.007 16.3 0.3 0.013 15.5 0.2 1.4 1 0 0 1 1 1 1 Myotoxin | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:108076-108971 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~108076-108971 NIR_SIR_ferr PF03460.12 g84438.t1 - 0.02 14.5 0 0.028 14 0 1.1 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:355625-355915 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~355625-355915 ATHILA PF03078.10 g6202.t1 - 0.000073 21.5 0.9 0.0031 16.1 0.4 2 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:240880-241629 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~240880-241629 DUF1285 PF06938.6 g51296.t1 - 0.017 15.1 0 0.018 15 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1285) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:358019-358297 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~358019-358297 FlaA PF04620.7 g92530.t1 - 0.015 14.7 0.1 0.017 14.5 0.1 1 1 0 0 1 1 1 0 Flagellar filament outer layer protein Flaa | Ref_seq=scaffold1992_contigs=5, transcript_loc=scaffold1992_contigs=5:5807-6079 Augustus predicted protein sequence Tobacco scaffold1992_contigs=5~5807-6079 ORF6C PF10552.4 g87446.t1 - 0.068 12.9 0 0.8 9.4 0 2.1 2 0 0 2 2 2 0 ORF6C domain | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:130673-131561 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~130673-131561 Ribosomal_L32p PF01783.18 g102454.t1 - 0.068 13.3 2.1 0.096 12.8 1.4 1.2 1 0 0 1 1 1 0 Ribosomal L32p protein family | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:12716-15226 Augustus predicted protein sequence Tobacco scaffold2251_contigs=17~12716-15226 LRV_FeS PF05484.6 g124552.t1 - 0.027 14 0.3 0.055 13 0.2 1.5 1 0 0 1 1 1 0 LRV protein FeS4 cluster | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:3185-3442 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~3185-3442 DUF2127 PF09900.4 g129045.t1 - 0.074 13 0 0.095 12.7 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold2912_contigs=1, transcript_loc=scaffold2912_contigs=1:8891-9311 Augustus predicted protein sequence Tobacco scaffold2912_contigs=1~8891-9311 Flagellar_rod PF05149.7 g124802.t1 - 0.047 12.8 0.1 0.051 12.7 0.1 1 1 0 0 1 1 1 0 Paraflagellar rod protein | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:189452-189667 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~189452-189667 TSGP1 PF07771.6 g2595.t1 - 1.4 8.7 8.9 1.3 8.8 0 2.4 2 1 0 2 2 2 0 Tick salivary peptide group 1 | Ref_seq=scaffold214_contigs=4, transcript_loc=scaffold214_contigs=4:13695-14753 Augustus predicted protein sequence Tobacco scaffold214_contigs=4~13695-14753 Gly-rich_Ago1 PF12764.2 g121367.t1 - 0.33 11.6 2.5 0.45 11.1 1.7 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:994225-994437 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~994225-994437 mono-CXXC PF15626.1 g53601.t1 - 1.3 9 4.3 5.5 7 3 2.1 1 1 0 1 1 1 0 single CXXC unit | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:182538-183216 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~182538-183216 Surfac_D-trimer PF09006.6 g67783.t1 - 0.1 12.3 0 22 4.8 0 2.6 2 0 0 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:293114-293893 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~293114-293893 Haemolytic PF01809.13 g28802.t1 - 0.052 13.1 0.1 0.12 11.9 0.1 1.7 1 0 0 1 1 1 0 Haemolytic domain | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:318269-321695 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~318269-321695 Hemopexin PF00045.14 g22536.t1 - 0.018 14.7 0.3 0.06 13 0 2 2 0 0 2 2 2 0 Hemopexin | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:13525-14141 Augustus predicted protein sequence Tobacco scaffold623_contigs=13~13525-14141 Casc1 PF12366.3 g88326.t1 - 0.05 13.1 0.3 0.05 13 0.2 1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:95409-95794 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~95409-95794 Rapamycin_bind PF08771.6 g40551.t1 - 0.051 13.6 0 0.056 13.5 0 1.2 1 0 0 1 1 1 0 Rapamycin binding domain | Ref_seq=scaffold977_contigs=2, transcript_loc=scaffold977_contigs=2:5530-5808 Augustus predicted protein sequence Tobacco scaffold977_contigs=2~5530-5808 Se-cys_synth_N PF12390.3 g15211.t1 - 0.078 13 0 0.11 12.5 0 1.3 1 0 0 1 1 1 0 Selenocysteine synthase N terminal | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:172940-173236 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~172940-173236 DUF482 PF04339.7 g116478.t1 - 0.12 11.2 0.1 0.2 10.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF482 | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:139240-139737 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~139240-139737 BTK PF00779.14 g34012.t1 - 0.18 11.4 1 0.28 10.8 0.7 1.3 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:33757-34341 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~33757-34341 TFIIF_alpha PF05793.7 g26633.t1 - 4.4 5.5 29.3 5.7 5.1 20.3 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:62808-63958 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~62808-63958 Arrestin_N PF00339.24 g45105.t1 - 0.021 14.6 0 0.028 14.2 0 1.1 1 0 0 1 1 1 0 Arrestin (or S-antigen), N-terminal domain | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:420647-421342 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~420647-421342 RVT_3 PF13456.1 g5144.t1 - 0.021 14.5 0.1 0.064 13 0 1.8 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:20967-21329 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~20967-21329 DUF3425 PF11905.3 g97.t1 - 0.0063 16.3 0 0.0063 16.3 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3425) | Ref_seq=scaffold4_contigs=1, transcript_loc=scaffold4_contigs=1:3329-3556 Augustus predicted protein sequence Tobacco scaffold4_contigs=1~3329-3556 DUF2457 PF10446.4 g32539.t1 - 0.57 8.8 32 0.029 13.1 18.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:320713-322995 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~320713-322995 Dodecin PF07311.7 g71405.t1 - 0.15 12 1.7 25 5 0 3.4 3 0 0 3 3 3 0 Dodecin | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:842790-843763 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~842790-843763 DUF4219 PF13961.1 g120576.t1 - 0.017 14.5 0.3 0.017 14.5 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:256149-256484 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~256149-256484 eIF_4EBP PF05456.6 g123833.t1 - 0.12 12 0 0.21 11.2 0 1.3 1 1 0 1 1 1 0 Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:687906-688196 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~687906-688196 DUF1985 PF09331.6 g46447.t1 - 0.032 14 0 0.072 12.8 0 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:433660-435414 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~433660-435414 RepL PF05732.6 g121384.t1 - 0.14 11.3 0 0.19 10.9 0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1049867-1050218 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1049867-1050218 Vint PF14623.1 g92655.t1 - 0.08 12.4 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 Hint-domain | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:239373-239744 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~239373-239744 DUF3013 PF11217.3 g63021.t1 - 0.065 12.9 0 0.069 12.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3013) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:243442-243738 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~243442-243738 HALZ PF02183.13 g115467.t1 - 0.95 9.2 4.2 0.86 9.3 0.8 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:405410-406006 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~405410-406006 Usg PF06233.7 g91501.t1 - 0.031 14.1 0 0.038 13.8 0 1.1 1 0 0 1 1 1 0 Usg-like family | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:131144-131425 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~131144-131425 rve PF00665.21 g82613.t1 - 0.034 14.2 0 0.069 13.2 0 1.5 2 0 0 2 2 2 0 Integrase core domain | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:10759-13388 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~10759-13388 ATHILA PF03078.10 g78908.t1 - 0.0012 17.5 0 0.0013 17.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:17239-17547 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~17239-17547 DUF4319 PF14203.1 g91625.t1 - 0.02 14.4 0.1 0.025 14.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:122987-123306 Augustus predicted protein sequence Tobacco scaffold1975_contigs=6~122987-123306 VSG_B PF13206.1 g87508.t1 - 0.21 10.6 1.4 0.24 10.4 0.9 1 1 0 0 1 1 1 0 Trypanosomal VSG domain | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:290809-291617 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~290809-291617 DUF605 PF04652.11 g23691.t1 - 2.9 7.2 12.2 3.3 7 8.5 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:433619-434052 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~433619-434052 Host_attach PF10116.4 g94010.t1 - 0.11 12.6 0 0.17 12 0 1.2 1 0 0 1 1 1 0 Protein required for attachment to host cells | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:412265-412822 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~412265-412822 DOG1 PF14144.1 g106762.t1 - 0.18 11.8 1.1 0.26 11.3 0.8 1.3 1 0 0 1 1 1 0 Seed dormancy control | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:536273-536503 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~536273-536503 Vac_Fusion PF02346.11 g68105.t1 - 0.13 11.7 0 2.8 7.4 0 2.5 3 0 0 3 3 3 0 Chordopoxvirus fusion protein | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:31716-32282 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~31716-32282 TALPID3 PF15324.1 g30045.t1 - 0.58 7.4 4.4 0.72 7.1 3 1.1 1 0 0 1 1 1 0 Hedgehog signalling target | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:281625-282957 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~281625-282957 DUF3372 PF11852.3 g17747.t1 - 0.027 13.6 0 0.029 13.5 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:90570-90791 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~90570-90791 UBN2_2 PF14227.1 g18297.t1 - 0.00073 19 0.1 0.00099 18.6 0.1 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:70619-70968 Augustus predicted protein sequence Tobacco scaffold549_contigs=4~70619-70968 IncA PF04156.9 g55066.t1 - 0.013 15.1 7 0.015 14.9 4.8 1.1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:489705-490465 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~489705-490465 FATC PF02260.15 g11371.t1 - 0.0012 18.2 0 0.82 9.1 0 2.4 2 0 0 2 2 2 2 FATC domain | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:102403-102865 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~102403-102865 PerB PF06590.6 g90960.t1 - 0.1 12.9 0.4 0.12 12.6 0.3 1 1 0 0 1 1 1 0 PerB protein | Ref_seq=scaffold1965_contigs=7, transcript_loc=scaffold1965_contigs=7:81432-81879 Augustus predicted protein sequence Tobacco scaffold1965_contigs=7~81432-81879 DUF1719 PF08224.6 g125184.t1 - 0.031 13.3 0.6 0.036 13.1 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold2768_contigs=1, transcript_loc=scaffold2768_contigs=1:146261-146509 Augustus predicted protein sequence Tobacco scaffold2768_contigs=1~146261-146509 DSHCT PF08148.7 g107917.t1 - 0.1 11.8 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 DSHCT (NUC185) domain | Ref_seq=scaffold2414_contigs=4, transcript_loc=scaffold2414_contigs=4:2737-3006 Augustus predicted protein sequence Tobacco scaffold2414_contigs=4~2737-3006 DUF1199 PF06712.6 g74708.t1 - 0.051 13.4 0.2 0.092 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1563_contigs=5, transcript_loc=scaffold1563_contigs=5:67438-67767 Augustus predicted protein sequence Tobacco scaffold1563_contigs=5~67438-67767 DUF1726 PF08351.6 g102128.t1 - 0.044 13.4 0.4 0.47 10.1 0.2 2 1 1 0 1 1 1 0 Domain of unknown function (DUF1726) | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:146797-147006 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~146797-147006 SSB PF00436.20 g4978.t1 - 0.11 12.3 0 0.16 11.8 0 1.2 1 0 0 1 1 1 0 Single-strand binding protein family | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:18956-19432 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~18956-19432 DUF3336 PF11815.3 g70556.t1 - 0.12 11.8 0.5 0.14 11.6 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3336) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:415653-415934 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~415653-415934 UPF0564 PF10595.4 g94786.t1 - 0.029 13.3 0.2 0.033 13.1 0.1 1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0564 | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:157211-157501 Augustus predicted protein sequence Tobacco scaffold2046_contigs=5~157211-157501 DUF2360 PF10152.4 g40339.t1 - 0.0014 18.8 1.3 0.0021 18.3 0.9 1.3 1 1 0 1 1 1 1 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:145267-145782 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~145267-145782 zf-CCHC_5 PF14787.1 g24701.t1 - 0.0023 17.3 3 0.0023 17.3 2.1 2 2 0 0 2 2 2 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:50747-51990 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~50747-51990 UPF0004 PF00919.15 g70446.t1 - 0.038 13.8 0.2 0.058 13.2 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold1495_contigs=2, transcript_loc=scaffold1495_contigs=2:30486-31098 Augustus predicted protein sequence Tobacco scaffold1495_contigs=2~30486-31098 AzlC PF03591.9 g6069.t1 - 0.0042 17 0.7 0.0078 16.1 0.5 1.4 1 1 0 1 1 1 1 AzlC protein | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:51711-51992 Augustus predicted protein sequence Tobacco scaffold291_contigs=11~51711-51992 SCP-1 PF05483.7 g57279.t1 - 0.0093 13.8 4.3 0.0094 13.7 3 1 1 0 0 1 1 1 1 Synaptonemal complex protein 1 (SCP-1) | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:126708-126911 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~126708-126911 E2_bind PF08825.5 g75956.t1 - 0.17 11.6 0.8 0.36 10.6 0.2 1.7 2 0 0 2 2 2 0 E2 binding domain | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:81066-82187 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~81066-82187 Sgf11 PF08209.6 g10586.t1 - 0.11 11.8 1.7 0.18 11.1 1.2 1.4 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:324257-324490 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~324257-324490 FH2 PF02181.18 g107087.t1 - 0.081 11.7 0.1 0.11 11.3 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:607110-611638 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~607110-611638 APT PF03440.9 g20984.t1 - 0.079 12.6 0 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Aerolysin/Pertussis toxin (APT) domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:187290-187733 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~187290-187733 PBP1_TM PF14812.1 g129942.t1 - 0.41 10.9 2.4 0.47 10.8 1.3 1.3 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold3237_contigs=1, transcript_loc=scaffold3237_contigs=1:1070-1489 Augustus predicted protein sequence Tobacco scaffold3237_contigs=1~1070-1489 Pox_A_type_inc PF04508.7 g112349.t1 - 0.026 14.2 0.2 0.093 12.5 0.1 1.9 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:150525-154232 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~150525-154232 DUF2963 PF11178.3 g67245.t1 - 0.016 14.6 0.2 0.029 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:877629-879029 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~877629-879029 Hemocyanin_M PF00372.14 g122419.t1 - 0.13 11.5 0.1 0.15 11.3 0 1 1 0 0 1 1 1 0 Hemocyanin, copper containing domain | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:165486-165767 Augustus predicted protein sequence Tobacco scaffold2745_contigs=7~165486-165767 zf-CCHC PF00098.18 g55742.t1 - 0.0000017 27.6 1.3 0.0000037 26.6 0.9 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:8328-8573 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~8328-8573 CaM-KIIN PF15170.1 g880.t1 - 0.0034 17.3 4.8 4.3 7.4 0.1 3.8 1 1 3 4 4 4 3 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:41997-42260 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~41997-42260 Glyco_hydro_19 PF00182.14 g79914.t1 - 0.032 13.9 0.2 0.036 13.7 0.1 1 1 0 0 1 1 1 0 Chitinase class I | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:197482-197694 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~197482-197694 DUF2647 PF10839.3 g111710.t1 - 0.001 19 0 0.4 10.7 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2647) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:24220-24689 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~24220-24689 Endonuc-BsobI PF09194.5 g51555.t1 - 0.13 11.1 0 0.15 10.9 0 1.1 1 0 0 1 1 1 0 Restriction endonuclease BsobI | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:99076-99431 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~99076-99431 ING PF12998.2 g47899.t1 - 0.011 16 0.1 0.011 16 0.1 2.4 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1102_contigs=2, transcript_loc=scaffold1102_contigs=2:11955-12944 Augustus predicted protein sequence Tobacco scaffold1102_contigs=2~11955-12944 JmjN PF02375.12 g3831.t1 - 0.038 13.5 0 0.072 12.6 0 1.4 1 0 0 1 1 1 0 jmjN domain | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:95606-96283 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~95606-96283 Biotin_lipoyl PF00364.17 g96661.t1 - 0.079 12.6 0.1 0.16 11.6 0 1.4 1 0 0 1 1 1 0 Biotin-requiring enzyme | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:91503-93606 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~91503-93606 Metallothi_Euk2 PF12809.2 g72451.t1 - 0.049 14 1.7 0.056 13.8 0.2 1.7 2 0 0 2 2 2 0 Eukaryotic metallothionein | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:9351-10380 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~9351-10380 IBV_3A PF03617.8 g21820.t1 - 0.22 11.2 1.7 0.43 10.3 1.2 1.5 1 1 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:255622-256029 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~255622-256029 Latarcin PF10279.4 g7177.t1 - 0.12 12.6 0.9 0.14 12.3 0.6 1.2 1 0 0 1 1 1 0 Latarcin precursor | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:32680-32904 Augustus predicted protein sequence Tobacco scaffold309_contigs=4~32680-32904 DUF3662 PF12401.3 g111387.t1 - 0.085 13 0 0.13 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2662) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:317541-317756 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~317541-317756 UPF0547 PF10571.4 g34670.t1 - 0.037 13.7 1.5 0.21 11.3 1 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:57779-59324 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~57779-59324 FXR1P_C PF12235.3 g121313.t1 - 0.58 10.2 5.8 0.75 9.8 4 1.1 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:734379-734696 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~734379-734696 ICE2 PF08426.5 g104506.t1 - 0.023 13.3 0.5 0.036 12.6 0.2 1.4 1 1 0 1 1 1 0 ICE2 | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:340019-340711 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~340019-340711 DUF3653 PF12375.3 g100903.t1 - 0.12 12.6 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Phage protein | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:304873-305868 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~304873-305868 CFIA_Pcf11 PF11526.3 g51639.t1 - 0.062 13.4 1.5 0.18 11.9 1.1 1.9 1 1 0 1 1 1 0 Subunit of cleavage factor IA Pcf11 | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:366693-367058 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~366693-367058 Dimer_Tnp_hAT PF05699.9 g111404.t1 - 0.0004 19.9 0.1 0.00041 19.9 0.1 1 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:374160-374360 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~374160-374360 DUF1406 PF07190.6 g64222.t1 - 0.097 12.3 0 0.16 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1406) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:168058-171242 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~168058-171242 Pro-kuma_activ PF09286.6 g78627.t1 - 0.028 14.4 0.4 0.042 13.9 0.2 1.4 1 1 0 1 1 1 0 Pro-kumamolisin, activation domain | Ref_seq=scaffold1666_contigs=3, transcript_loc=scaffold1666_contigs=3:32100-32405 Augustus predicted protein sequence Tobacco scaffold1666_contigs=3~32100-32405 Lactamase_B_4 PF13691.1 g109628.t1 - 0.021 14.2 0 5.3 6.5 0 2.3 2 0 0 2 2 2 0 tRNase Z endonuclease | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:180861-181436 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~180861-181436 DUF4387 PF14330.1 g77635.t1 - 0.039 14.2 0 0.048 13.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:245565-245990 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~245565-245990 UTP15_C PF09384.5 g102262.t1 - 0.0011 18.6 0.1 0.13 11.9 0 2.1 2 0 0 2 2 2 2 UTP15 C terminal | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:121901-122531 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~121901-122531 Transposase_28 PF04195.7 g84078.t1 - 0.11 11.7 0 1.3 8.2 0 2.1 2 0 0 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:575697-577087 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~575697-577087 CENP-Q PF13094.1 g27337.t1 - 0.00067 19.7 0.9 0.00096 19.2 0.6 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:23526-24629 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~23526-24629 CCER1 PF15482.1 g14675.t1 - 0.16 11.5 0.8 0.19 11.3 0.6 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing glutamate-rich protein family 1 | Ref_seq=scaffold480_contigs=8, transcript_loc=scaffold480_contigs=8:83199-83501 Augustus predicted protein sequence Tobacco scaffold480_contigs=8~83199-83501 ATHILA PF03078.10 g75048.t1 - 0.0017 17 0 0.33 9.4 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:387216-389956 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~387216-389956 Biotin_lipoyl PF00364.17 g62155.t1 - 0.091 12.4 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 Biotin-requiring enzyme | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:80656-81165 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~80656-81165 Calpain_III PF01067.17 g118500.t1 - 0.0079 15.8 0 0.0091 15.6 0 1.2 1 0 0 1 1 1 1 Calpain large subunit, domain III | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:56952-60907 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~56952-60907 Tombus_movement PF05318.7 g21595.t1 - 0.0028 18.2 0.2 0.0053 17.3 0.1 1.4 1 0 0 1 1 1 1 Tombusvirus movement protein | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:112544-112939 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~112544-112939 Toxin_22 PF08092.6 g26696.t1 - 1.7 8.5 4 23 4.9 0.1 2.4 1 1 0 2 2 2 0 Magi peptide toxin family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:165109-165605 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~165109-165605 ATP-synt_E PF05680.7 g59566.t1 - 0.31 11 4.9 2.1 8.3 3.4 2 2 0 0 2 2 2 0 ATP synthase E chain | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:69013-70010 Augustus predicted protein sequence Tobacco scaffold1293_contigs=3~69013-70010 RVT_3 PF13456.1 g106333.t1 - 0.00000019 30.7 0 0.00000028 30.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:183814-184566 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~183814-184566 RVT_3 PF13456.1 g72641.t1 - 0.029 14.1 0.2 0.54 10 0.1 2.1 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:299384-299722 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~299384-299722 Avl9 PF09794.4 g38216.t1 - 0.14 10.6 0 0.19 10.2 0 1.1 1 0 0 1 1 1 0 Transport protein Avl9 | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:173354-177140 Augustus predicted protein sequence Tobacco scaffold931_contigs=12~173354-177140 DUF1741 PF08427.5 g128364.t1 - 0.059 12.8 0.5 0.064 12.7 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1741) | Ref_seq=scaffold2865_contigs=1, transcript_loc=scaffold2865_contigs=1:122-418 Augustus predicted protein sequence Tobacco scaffold2865_contigs=1~122-418 EBV-NA3 PF05009.7 g128335.t1 - 0.078 12.2 1.7 0.084 12.1 1.2 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold2863_contigs=1, transcript_loc=scaffold2863_contigs=1:30-257 Augustus predicted protein sequence Tobacco scaffold2863_contigs=1~30-257 Inhibitor_I10 PF12559.3 g96443.t1 - 5.2 7.4 8.9 1.4 9.2 3.3 2.2 1 1 1 2 2 2 0 Serine endopeptidase inhibitors | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:11016-11602 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~11016-11602 Glyco_hydro_65C PF03633.10 g828.t1 - 0.03 14.3 0 0.053 13.6 0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:81007-82853 Augustus predicted protein sequence Tobacco scaffold53_contigs=4~81007-82853 HP_OMP PF01856.12 g129575.t1 - 0.11 12.3 0 0.13 12.1 0 1.1 1 0 0 1 1 1 0 Helicobacter outer membrane protein | Ref_seq=scaffold2987_contigs=1, transcript_loc=scaffold2987_contigs=1:3687-4728 Augustus predicted protein sequence Tobacco scaffold2987_contigs=1~3687-4728 DUF4283 PF14111.1 g35583.t1 - 0.00000059 28.6 0 0.0000025 26.6 0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:131082-131831 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~131082-131831 Peptidase_M57 PF12388.3 g9378.t1 - 0.077 12.3 0.1 0.099 11.9 0.1 1.1 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase | Ref_seq=scaffold360_contigs=3, transcript_loc=scaffold360_contigs=3:13114-13413 Augustus predicted protein sequence Tobacco scaffold360_contigs=3~13114-13413 STAT6_C PF14596.1 g102236.t1 - 0.086 12.7 0 0.11 12.4 0 1.2 1 0 0 1 1 1 0 STAT6 C-terminal | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:84856-85194 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~84856-85194 Tnp_P_element_C PF12596.3 g25156.t1 - 0.1 12.9 1.7 0.2 12 0.3 2 1 1 1 2 2 2 0 87kDa Transposase | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:167743-169009 Augustus predicted protein sequence Tobacco scaffold687_contigs=8~167743-169009 UPF0004 PF00919.15 g103994.t1 - 0.17 11.6 1.8 0.96 9.3 0.6 2.2 1 1 1 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:66592-67197 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~66592-67197 Prp19_bind PF06991.6 g93322.t1 - 0.018 14.3 4.3 0.018 14.3 3 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:51643-51978 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~51643-51978 REC114-like PF15165.1 g88783.t1 - 0.035 13.8 0.1 0.035 13.8 0 1.1 1 0 0 1 1 1 0 Meiotic recombination protein REC114-like | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:124701-124976 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~124701-124976 Mating_C PF12737.2 g113102.t1 - 0.051 12.4 2.1 0.063 12.1 1.4 1.1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 | Ref_seq=scaffold2620_contigs=9, transcript_loc=scaffold2620_contigs=9:232178-234373 Augustus predicted protein sequence Tobacco scaffold2620_contigs=9~232178-234373 PNRC PF15365.1 g23380.t1 - 1.9 8.5 7.2 0.59 10.1 2.6 1.9 2 0 0 2 2 2 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:17526-18157 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~17526-18157 APG6 PF04111.7 g76772.t1 - 0.011 14.8 2.5 0.016 14.2 1.7 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:10998-12986 Augustus predicted protein sequence Tobacco scaffold1620_contigs=20~10998-12986 DUF2149 PF09919.4 g35692.t1 - 0.23 11.5 0.9 0.33 11 0.3 1.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2149) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:130603-130872 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~130603-130872 Phage_connector PF05352.7 g58124.t1 - 0.042 13 0 0.043 13 0 1.1 1 0 0 1 1 1 0 Phage Connector (GP10) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:417614-418125 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~417614-418125 Dynamin_M PF01031.15 g98604.t1 - 0.12 11.1 0 0.15 10.8 0 1.1 1 0 0 1 1 1 0 Dynamin central region | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:310952-311251 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~310952-311251 DUF3563 PF12086.3 g59588.t1 - 0.031 14 0 0.078 12.7 0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3563) | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:60930-61589 Augustus predicted protein sequence Tobacco scaffold1294_contigs=7~60930-61589 zf-BED PF02892.10 g24424.t1 - 0.00027 20.6 1.1 0.00047 19.8 0.7 1.4 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:162776-163986 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~162776-163986 NYD-SP28_assoc PF14775.1 g49638.t1 - 0.16 11.6 2.2 0.37 10.5 1.5 1.6 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold1131_contigs=3, transcript_loc=scaffold1131_contigs=3:79883-82043 Augustus predicted protein sequence Tobacco scaffold1131_contigs=3~79883-82043 TMEM191C PF15194.1 g87983.t1 - 0.0078 16 0.1 0.0095 15.8 0.1 1.1 1 0 0 1 1 1 1 TMEM191C family | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:118386-118595 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~118386-118595 Retrotrans_gag PF03732.12 g36139.t1 - 0.0017 18.3 0.2 0.0034 17.4 0.1 1.6 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:338998-340677 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~338998-340677 DUF1313 PF07011.6 g48901.t1 - 0.03 13.9 0.1 0.037 13.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1313) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:588783-589010 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~588783-589010 Dscam_C PF12355.3 g32499.t1 - 0.029 14.6 3 0.039 14.2 2.1 1.3 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:263799-264251 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~263799-264251 Myb_DNA-bind_5 PF13873.1 g128494.t1 - 0.13 12.1 0 0.21 11.5 0 1.3 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold2872_contigs=1, transcript_loc=scaffold2872_contigs=1:11633-11863 Augustus predicted protein sequence Tobacco scaffold2872_contigs=1~11633-11863 Leu_zip PF15294.1 g116268.t1 - 0.0081 15.3 5.3 0.57 9.2 0.3 2 1 1 1 2 2 2 2 Leucine zipper | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:310235-310839 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~310235-310839 VGCC_beta4Aa_N PF12052.3 g24933.t1 - 0.035 13.9 1.3 0.042 13.7 0.9 1.4 1 1 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:42284-42580 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~42284-42580 CO_deh_flav_C PF03450.12 g125387.t1 - 0.019 14.9 0.5 0.024 14.5 0.4 1.2 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:11616-12074 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~11616-12074 Phage_fiber PF03335.8 g91928.t1 - 1.2 9 5 12 6 0.5 2.7 2 0 0 2 2 2 0 Phage tail fibre repeat | Ref_seq=scaffold1981_contigs=8, transcript_loc=scaffold1981_contigs=8:158948-159259 Augustus predicted protein sequence Tobacco scaffold1981_contigs=8~158948-159259 Ion_trans_N PF08412.5 g47977.t1 - 0.051 12.8 0 0.063 12.5 0 1.2 1 0 0 1 1 1 0 Ion transport protein N-terminal | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:262902-263543 Augustus predicted protein sequence Tobacco scaffold1103_contigs=14~262902-263543 CAF-1_p150 PF11600.3 g51604.t1 - 0.00036 19.9 23.3 0.00046 19.6 16.2 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:251944-252543 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~251944-252543 BSP_II PF05432.6 g48791.t1 - 0.0012 18.1 9.8 0.0013 18.1 6.8 1 1 0 0 1 1 1 1 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:355469-355690 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~355469-355690 Dockerin_1 PF00404.13 g9531.t1 - 0.16 11.7 0.2 0.48 10.2 0 1.9 2 0 0 2 2 2 0 Dockerin type I repeat | Ref_seq=scaffold371_contigs=8, transcript_loc=scaffold371_contigs=8:23806-26424 Augustus predicted protein sequence Tobacco scaffold371_contigs=8~23806-26424 Phytoreo_S7 PF07236.6 g85794.t1 - 0.011 14.1 0 0.012 13.9 0 1 1 0 0 1 1 1 0 Phytoreovirus S7 protein | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:598639-598929 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~598639-598929 DUF4211 PF13926.1 g64009.t1 - 0.12 11.8 0.3 0.13 11.6 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4211) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:153500-154100 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~153500-154100 XkdN PF08890.6 g82611.t1 - 0.11 12.2 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Phage XkdN-like protein | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:8708-9075 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~8708-9075 QLQ PF08880.6 g110184.t1 - 0.022 14.1 0.3 0.046 13.1 0.1 1.7 1 1 1 2 2 2 0 QLQ | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:29867-30391 Augustus predicted protein sequence Tobacco scaffold2530_contigs=9~29867-30391 LXG PF04740.7 g72196.t1 - 0.038 13.7 0.3 0.046 13.5 0.2 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:497693-497965 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~497693-497965 AFOR_N PF02730.10 g12912.t1 - 0.041 13.2 0 0.065 12.5 0 1.3 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:63336-64210 Augustus predicted protein sequence Tobacco scaffold436_contigs=4~63336-64210 MULE PF10551.4 g11681.t1 - 0.018 15.1 0.9 0.031 14.4 0.6 1.3 1 0 0 1 1 1 0 MULE transposase domain | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:19341-19993 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~19341-19993 Lactamase_B_4 PF13691.1 g16997.t1 - 0.039 13.4 0 0.054 12.9 0 1.3 1 0 0 1 1 1 0 tRNase Z endonuclease | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:220554-220817 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~220554-220817 zf-BED PF02892.10 g93686.t1 - 0.049 13.3 3.8 0.042 13.6 1.4 1.9 2 1 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:334591-338515 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~334591-338515 DUF2284 PF10050.4 g117526.t1 - 0.094 12.3 0 0.1 12.2 0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) | Ref_seq=scaffold2688_contigs=4, transcript_loc=scaffold2688_contigs=4:65609-67710 Augustus predicted protein sequence Tobacco scaffold2688_contigs=4~65609-67710 Tricorn_PDZ PF14685.1 g20025.t1 - 0.043 13.6 0.3 0.085 12.6 0.2 1.5 1 1 0 1 1 1 0 Tricorn protease PDZ domain | Ref_seq=scaffold577_contigs=2, transcript_loc=scaffold577_contigs=2:18549-19381 Augustus predicted protein sequence Tobacco scaffold577_contigs=2~18549-19381 CAP_N PF01213.14 g55667.t1 - 0.072 12.3 3.4 0.076 12.2 2.4 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:185058-185585 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~185058-185585 DUF4219 PF13961.1 g18483.t1 - 0.077 12.4 0.9 0.12 11.7 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:105162-105974 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~105162-105974 RBD-FIP PF09457.5 g8942.t1 - 0.00012 21.8 2.7 0.32 10.8 0.1 2.6 2 0 0 2 2 2 2 FIP domain | Ref_seq=scaffold347_contigs=6, transcript_loc=scaffold347_contigs=6:25368-26120 Augustus predicted protein sequence Tobacco scaffold347_contigs=6~25368-26120 Trypan_PARP PF05887.6 g3143.t1 - 0.4 10.5 14 0.41 10.4 9.7 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:44723-46134 Augustus predicted protein sequence Tobacco scaffold227_contigs=2~44723-46134 IlvGEDA_leader PF08046.6 g9490.t1 - 0.2 10.8 0.5 0.45 9.7 0.3 1.6 1 0 0 1 1 1 0 IlvGEDA operon leader peptide | Ref_seq=scaffold368_contigs=1, transcript_loc=scaffold368_contigs=1:28950-29672 Augustus predicted protein sequence Tobacco scaffold368_contigs=1~28950-29672 VIT_2 PF13757.1 g19565.t1 - 0.11 12 0.1 1.1 8.7 0 2.4 1 1 1 2 2 2 0 Vault protein inter-alpha-trypsin domain | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:32857-33630 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~32857-33630 NOG1 PF06858.9 g129978.t1 - 0.047 13.5 0.1 14 5.6 0 2.3 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) | Ref_seq=scaffold3287_contigs=1, transcript_loc=scaffold3287_contigs=1:2312-3069 Augustus predicted protein sequence Tobacco scaffold3287_contigs=1~2312-3069 Rep_fac-A_C PF08646.5 g50814.t1 - 0.00000016 31.1 1 0.00000024 30.5 0.6 1.3 1 1 0 1 1 1 1 Replication factor-A C terminal domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:209251-211414 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~209251-211414 HTH_19 PF12844.2 g100998.t1 - 0.063 13.3 0 0.087 12.8 0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:537026-537490 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~537026-537490 PROL5-SMR PF15621.1 g12541.t1 - 9.7 6.6 12 15 6 7.7 1.7 1 1 1 2 2 2 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:145486-146761 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~145486-146761 DUF530 PF04409.7 g15371.t1 - 0.079 11 0.2 0.088 10.8 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF530) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:141236-141528 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~141236-141528 Tol_Tol_Ttg2 PF05494.7 g72922.t1 - 0.0075 15.8 0.2 0.013 15 0 1.5 2 0 0 2 2 2 1 Toluene tolerance, Ttg2 | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:25656-26234 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~25656-26234 ATHILA PF03078.10 g112140.t1 - 0.000028 22.9 0 0.000043 22.2 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:63320-64284 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~63320-64284 Snapin_Pallidin PF14712.1 g97745.t1 - 0.032 14.5 2.4 0.048 13.9 1.7 1.2 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:56863-57168 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~56863-57168 zf-CCHC PF00098.18 g30138.t1 - 0.01 15.7 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold769_contigs=2, transcript_loc=scaffold769_contigs=2:27018-27766 Augustus predicted protein sequence Tobacco scaffold769_contigs=2~27018-27766 DUF4201 PF13870.1 g68832.t1 - 0.043 13.2 13 0.31 10.4 3.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1481_contigs=2, transcript_loc=scaffold1481_contigs=2:32220-32915 Augustus predicted protein sequence Tobacco scaffold1481_contigs=2~32220-32915 Brr6_like_C_C PF10104.4 g51221.t1 - 0.019 14.5 0.2 0.02 14.4 0.1 1.2 1 0 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:124422-125412 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~124422-125412 PNK3P PF08645.6 g64941.t1 - 0.13 11.7 0 0.18 11.2 0 1.2 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:33398-33846 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~33398-33846 Amidase_2 PF01510.20 g42010.t1 - 0.0019 18.2 0.1 0.0022 18 0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:18017-18316 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~18017-18316 Phage_GP20 PF06810.6 g44080.t1 - 0.0099 15.3 5.5 0.013 14.9 3.8 1.1 1 0 0 1 1 1 1 Phage minor structural protein GP20 | Ref_seq=scaffold1033_contigs=1, transcript_loc=scaffold1033_contigs=1:50307-50909 Augustus predicted protein sequence Tobacco scaffold1033_contigs=1~50307-50909 Phage_endo_I PF05367.6 g79953.t1 - 0.12 11.7 0.1 0.14 11.5 0 1.1 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:342543-342758 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~342543-342758 Mei5 PF10376.4 g108968.t1 - 0.0061 16.1 0.2 0.0078 15.7 0.2 1.1 1 0 0 1 1 1 1 Double-strand recombination repair protein | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:31414-32157 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~31414-32157 MHCassoc_trimer PF08831.5 g111627.t1 - 0.037 13.8 0.1 0.087 12.6 0.1 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:90748-92015 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~90748-92015 IFP_35_N PF07334.8 g74506.t1 - 0.12 12.4 0.6 0.31 11 0.2 2 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:13625-14499 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~13625-14499 HD-ZIP_N PF04618.7 g56458.t1 - 0.071 13.6 0.1 1.7 9.2 0.1 2.2 2 0 0 2 2 2 0 HD-ZIP protein N terminus | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:168810-169636 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~168810-169636 UBN2 PF14223.1 g123251.t1 - 0.0086 15.8 2.5 0.046 13.4 0.6 2.4 1 1 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:174101-175186 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~174101-175186 TIP_N PF12457.3 g99898.t1 - 0.1 12.6 0 0.15 12.1 0 1.4 1 1 0 1 1 1 0 Tuftelin interacting protein N terminal | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:48224-50637 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~48224-50637 FH2 PF02181.18 g71610.t1 - 0.0089 14.9 0 0.012 14.4 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:119633-121821 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~119633-121821 CP_ATPgrasp_2 PF14403.1 g43043.t1 - 0.11 11.1 0 0.13 10.8 0 1 1 0 0 1 1 1 0 Circularly permuted ATP-grasp type 2 | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:204986-205306 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~204986-205306 DUF3177 PF11375.3 g74233.t1 - 8.5 5.7 7.5 10 5.5 5.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:39183-39455 Augustus predicted protein sequence Tobacco scaffold1551_contigs=3~39183-39455 Lectin_N PF03954.9 g103884.t1 - 0.038 13.3 0.5 0.051 12.9 0.4 1.2 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:295958-296663 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~295958-296663 IlvGEDA_leader PF08046.6 g25954.t1 - 0.93 8.6 2.8 1.4 8.1 2 1.3 1 0 0 1 1 1 0 IlvGEDA operon leader peptide | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:162532-163031 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~162532-163031 GSIII_N PF12437.3 g44820.t1 - 0.041 13.2 0.1 0.049 13 0.1 1.2 1 0 0 1 1 1 0 Glutamine synthetase type III N terminal | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:262131-262469 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~262131-262469 PolyG_pol PF01518.11 g30594.t1 - 0.056 11.9 0.5 4 5.8 0 2 1 1 1 2 2 2 0 Sigma NS protein | Ref_seq=scaffold776_contigs=2, transcript_loc=scaffold776_contigs=2:7561-7992 Augustus predicted protein sequence Tobacco scaffold776_contigs=2~7561-7992 DUF2890 PF11081.3 g86369.t1 - 0.95 9.4 3.9 1.3 9 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold1847_contigs=8, transcript_loc=scaffold1847_contigs=8:5034-5706 Augustus predicted protein sequence Tobacco scaffold1847_contigs=8~5034-5706 zf-CCHC_3 PF13917.1 g106868.t1 - 0.0034 17 1.7 0.0048 16.5 1.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:25640-25963 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~25640-25963 Radical_SAM PF04055.16 g37896.t1 - 0.028 14.5 0 0.03 14.5 0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:207388-208940 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~207388-208940 DUF1372 PF07116.6 g75826.t1 - 0.042 13.8 0 0.046 13.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1372) | Ref_seq=scaffold1603_contigs=1, transcript_loc=scaffold1603_contigs=1:72467-72927 Augustus predicted protein sequence Tobacco scaffold1603_contigs=1~72467-72927 Lys-AminoMut_A PF09043.6 g14230.t1 - 0.0014 16.8 0 0.76 7.8 0 2.2 2 0 0 2 2 2 2 D-Lysine 5,6-aminomutase alpha subunit | Ref_seq=scaffold464_contigs=10, transcript_loc=scaffold464_contigs=10:22008-23357 Augustus predicted protein sequence Tobacco scaffold464_contigs=10~22008-23357 Plasmid_Txe PF06769.8 g15879.t1 - 0.15 11.9 0.2 0.46 10.3 0.1 1.8 2 0 0 2 2 2 0 Plasmid encoded toxin Txe | Ref_seq=scaffold505_contigs=11, transcript_loc=scaffold505_contigs=11:249410-249981 Augustus predicted protein sequence Tobacco scaffold505_contigs=11~249410-249981 LSM PF01423.17 g55765.t1 - 0.061 12.8 0.1 0.23 11 0 2 2 1 0 2 2 2 0 LSM domain | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:60446-61175 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~60446-61175 BIR PF00653.16 g26147.t1 - 0.045 14.1 0.1 0.057 13.8 0.1 1.1 1 0 0 1 1 1 0 Inhibitor of Apoptosis domain | Ref_seq=scaffold711_contigs=2, transcript_loc=scaffold711_contigs=2:10813-11040 Augustus predicted protein sequence Tobacco scaffold711_contigs=2~10813-11040 IL12p40_C PF10420.4 g103805.t1 - 0.028 14.5 0 0.035 14.1 0 1.2 1 0 0 1 1 1 0 Cytokine interleukin-12p40 C-terminus | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:96459-96737 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~96459-96737 Metallothio PF00131.15 g65316.t1 - 0.38 10.6 9.6 0.45 10.4 6.7 1.1 1 0 0 1 1 1 0 Metallothionein | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:539-742 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~539-742 Propep_M14 PF02244.11 g31200.t1 - 0.0043 16.6 0 0.0067 16 0 1.3 1 0 0 1 1 1 1 Carboxypeptidase activation peptide | Ref_seq=scaffold790_contigs=1, transcript_loc=scaffold790_contigs=1:1193-1620 Augustus predicted protein sequence Tobacco scaffold790_contigs=1~1193-1620 TMEM71 PF15121.1 g36939.t1 - 0.048 13.3 0 0.053 13.2 0 1.2 1 0 0 1 1 1 0 TMEM71 protein family | Ref_seq=scaffold905_contigs=2, transcript_loc=scaffold905_contigs=2:11190-13052 Augustus predicted protein sequence Tobacco scaffold905_contigs=2~11190-13052 Peptidase_M56 PF05569.6 g58573.t1 - 0.076 11.9 0.1 0.086 11.7 0.1 1 1 0 0 1 1 1 0 BlaR1 peptidase M56 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:202632-202871 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~202632-202871 PIP49_N PF14875.1 g130262.t1 - 0.017 14.7 3 2.4 7.7 0.1 2.1 1 1 1 2 2 2 0 N-term cysteine-rich ER, FAM69 | Ref_seq=scaffold3807_contigs=1, transcript_loc=scaffold3807_contigs=1:402-1061 Augustus predicted protein sequence Tobacco scaffold3807_contigs=1~402-1061 DUF3853 PF12964.2 g57263.t1 - 0.11 12.3 0 0.13 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:74212-75168 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~74212-75168 A1_Propeptide PF07966.7 g55970.t1 - 0.01 15.6 8.9 4.6 7.1 0.2 3.7 3 0 0 3 3 3 0 A1 Propeptide | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:253311-253604 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~253311-253604 DUF1347 PF07079.6 g64383.t1 - 0.09 10.9 0 0.094 10.9 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:152678-152893 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~152678-152893 LRR_4 PF12799.2 g31352.t1 - 0.02 14.4 0.3 2.7 7.7 0 2.9 2 1 1 3 3 3 0 Leucine Rich repeats (2 copies) | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:22223-22534 Augustus predicted protein sequence Tobacco scaffold794_contigs=4~22223-22534 YqzM PF14141.1 g111681.t1 - 1.6 8.5 4.3 0.83 9.4 0.6 2.3 2 1 1 3 3 3 0 YqzM-like protein | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:221243-223556 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~221243-223556 G0-G1_switch_2 PF15103.1 g127746.t1 - 0.14 12.3 0 0.17 12.1 0 1.2 1 0 0 1 1 1 0 G0/G1 switch protein 2 | Ref_seq=scaffold2835_contigs=1, transcript_loc=scaffold2835_contigs=1:19323-19968 Augustus predicted protein sequence Tobacco scaffold2835_contigs=1~19323-19968 DUF1510 PF07423.6 g111077.t1 - 3.7 6.8 22.1 4.3 6.6 15.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:25948-31045 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~25948-31045 Fis1_TPR_N PF14852.1 g130238.t1 - 0.000096 21.6 0 0.00015 20.9 0 1.3 1 0 0 1 1 1 1 Fis1 N-terminal tetratricopeptide repeat | Ref_seq=scaffold3724_contigs=1, transcript_loc=scaffold3724_contigs=1:1-738 Augustus predicted protein sequence Tobacco scaffold3724_contigs=1~1-738 PYC_OADA PF02436.13 g16821.t1 - 0.03 13.7 0 0.033 13.6 0 1 1 0 0 1 1 1 0 Conserved carboxylase domain | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:519140-519873 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~519140-519873 Trypan_PARP PF05887.6 g63276.t1 - 0.059 13.1 18.3 0.1 12.4 12.7 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:100410-101030 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~100410-101030 DUF4337 PF14235.1 g68418.t1 - 1.4 8.6 5.4 1.9 8.3 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:71729-72103 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~71729-72103 DUF3363 PF11843.3 g7164.t1 - 0.089 11.4 0.7 0.093 11.3 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:4309-4575 Augustus predicted protein sequence Tobacco scaffold309_contigs=4~4309-4575 V-SNARE PF05008.10 g12673.t1 - 0.0014 18.7 2 0.002 18.2 1.4 1.2 1 0 0 1 1 1 1 Vesicle transport v-SNARE protein N-terminus | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:244857-245243 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~244857-245243 K_channel_TID PF07941.6 g109408.t1 - 0.42 10.8 4.5 0.24 11.6 1.3 1.9 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain | Ref_seq=scaffold2507_contigs=2, transcript_loc=scaffold2507_contigs=2:7427-8645 Augustus predicted protein sequence Tobacco scaffold2507_contigs=2~7427-8645 DUF2284 PF10050.4 g27331.t1 - 0.083 12.4 0.1 0.11 12.1 0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:18082-18588 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~18082-18588 DUF1411 PF07199.6 g43027.t1 - 0.21 10.9 2 2.3 7.5 0 2 1 1 0 2 2 2 0 Protein of unknown function (DUF1411) | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:143385-143657 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~143385-143657 zf-BED PF02892.10 g94783.t1 - 0.0000009 28.5 7.2 0.015 15 0 3.2 3 1 0 3 3 3 2 BED zinc finger | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:144655-150567 Augustus predicted protein sequence Tobacco scaffold2046_contigs=5~144655-150567 DUF169 PF02596.10 g111377.t1 - 0.15 11.3 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Uncharacterised ArCR, COG2043 | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:286690-286950 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~286690-286950 Xan_ur_permease PF00860.15 g24060.t1 - 0.026 12.9 2.2 0.029 12.8 1.5 1 1 0 0 1 1 1 0 Permease family | Ref_seq=scaffold663_contigs=3, transcript_loc=scaffold663_contigs=3:16326-16553 Augustus predicted protein sequence Tobacco scaffold663_contigs=3~16326-16553 Med29 PF11568.3 g98948.t1 - 0.08 12.9 0.3 0.099 12.6 0.2 1.1 1 0 0 1 1 1 0 Mediator complex subunit 29 | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:79802-80248 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~79802-80248 DUF2457 PF10446.4 g13751.t1 - 0.088 11.5 8.2 0.12 11 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:28583-30003 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~28583-30003 DUF1800 PF08811.6 g122522.t1 - 0.071 12 0.3 0.077 11.9 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1800) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:172264-172563 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~172264-172563 CobT PF06213.7 g114751.t1 - 0.00068 18.8 18.3 0.00084 18.5 12.7 1.1 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:35647-37777 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~35647-37777 YdjO PF14169.1 g70915.t1 - 0.019 14.4 0.1 0.034 13.6 0.1 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1498_contigs=4, transcript_loc=scaffold1498_contigs=4:108394-109170 Augustus predicted protein sequence Tobacco scaffold1498_contigs=4~108394-109170 RNase_H2-Ydr279 PF09468.5 g40436.t1 - 0.044 12.9 2.1 0.044 12.9 1.5 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:191727-192268 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~191727-192268 ACCA PF03255.9 g112254.t1 - 0.017 14.6 0 1.7 8.1 0 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:72805-73680 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~72805-73680 BCMA-Tall_bind PF09257.5 g54162.t1 - 5.9 6.9 7.6 13 5.7 0.3 2.3 1 1 1 2 2 2 0 BCMA, TALL-1 binding | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:49714-49956 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~49714-49956 DUF1490 PF07371.7 g6048.t1 - 2.7 7.9 8.6 9 6.3 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1490) | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:11718-12560 Augustus predicted protein sequence Tobacco scaffold291_contigs=11~11718-12560 Cytochrom_C_2 PF01322.15 g59394.t1 - 0.14 12.6 0 0.17 12.3 0 1.1 1 0 0 1 1 1 0 Cytochrome C' | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:43571-44103 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~43571-44103 Sterol_MT_C PF08498.5 g121094.t1 - 0.034 14 0 0.071 13 0 1.5 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:346369-346864 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~346369-346864 DUF3584 PF12128.3 g3405.t1 - 0.0029 15 0.1 0.0042 14.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:1269-2820 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~1269-2820 DUF2664 PF10867.3 g59071.t1 - 0.014 15.9 1 0.033 14.8 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2664) | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:184962-186101 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~184962-186101 PSD4 PF07631.6 g85760.t1 - 0.096 13 0.2 0.13 12.5 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1592) | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:521445-523985 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~521445-523985 Pox_A6 PF04924.7 g50830.t1 - 0.12 11.1 0 0.15 10.8 0 1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:264978-265365 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~264978-265365 CENP-W PF15510.1 g21031.t1 - 0.096 12.6 0.2 0.26 11.3 0 1.8 3 0 0 3 3 3 0 Centromere kinetochore component W | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:289625-290197 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~289625-290197 SAP25 PF15476.1 g68697.t1 - 4.5 6.7 9.3 6.2 6.2 1.8 2 1 1 1 2 2 2 0 Histone deacetylase complex subunit SAP25 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:839921-840513 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~839921-840513 DUF2300 PF10062.4 g78838.t1 - 0.083 12.6 0.1 0.09 12.5 0 1.3 1 1 0 1 1 1 0 Predicted secreted protein (DUF2300) | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:64612-64908 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~64612-64908 Peptidase_M32 PF02074.10 g7963.t1 - 0.042 12.4 0.5 0.049 12.2 0.4 1.1 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase | Ref_seq=scaffold326_contigs=6, transcript_loc=scaffold326_contigs=6:16402-17075 Augustus predicted protein sequence Tobacco scaffold326_contigs=6~16402-17075 Sugarporin_N PF11471.3 g36257.t1 - 0.074 12.7 1.3 0.12 12 0.9 1.2 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:596821-597126 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~596821-597126 Adeno_terminal PF02459.10 g55944.t1 - 0.064 11.4 0.8 0.07 11.2 0.6 1 1 0 0 1 1 1 0 Adenoviral DNA terminal protein | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:197335-197547 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~197335-197547 BRE1 PF08647.6 g8876.t1 - 0.018 14.9 0.7 0.02 14.8 0.5 1.2 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:471510-471749 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~471510-471749 S19 PF06756.6 g19972.t1 - 0.12 12.2 0.3 0.15 11.9 0.2 1.3 1 0 0 1 1 1 0 Chorion protein S19 C-terminal | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:151238-151798 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~151238-151798 RepA1_leader PF08048.7 g125597.t1 - 0.0078 16.2 1.8 0.46 10.5 0.1 2.4 2 0 0 2 2 2 2 Tap RepA1 leader peptide | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:13324-13524 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~13324-13524 CBM_5_12_2 PF14600.1 g52818.t1 - 0.031 13.8 0 0.051 13.2 0 1.3 1 0 0 1 1 1 0 Cellulose-binding domain | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1173827-1174174 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1173827-1174174 U3_snoRNA_assoc PF08297.6 g36065.t1 - 0.099 12.8 2.9 0.14 12.4 2 1.2 1 0 0 1 1 1 0 U3 snoRNA associated | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:212748-213134 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~212748-213134 DUF2510 PF10708.4 g23334.t1 - 2.4 7.6 4.8 32 4 0.1 3.2 3 1 1 4 4 4 0 Protein of unknown function (DUF2510) | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:138972-141162 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~138972-141162 UBN2_2 PF14227.1 g11012.t1 - 0.018 14.6 0.1 0.023 14.2 0.1 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold400_contigs=4, transcript_loc=scaffold400_contigs=4:21957-25326 Augustus predicted protein sequence Tobacco scaffold400_contigs=4~21957-25326 Toxin_7 PF05980.7 g97053.t1 - 0.16 12 0.8 0.16 12 0.6 1.8 2 0 0 2 2 2 0 Toxin 7 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:402076-402396 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~402076-402396 PHB_depo_C PF06850.6 g130222.t1 - 0.037 13.2 0.3 5.9 6 0 2.1 1 1 1 2 2 2 0 PHB de-polymerase C-terminus | Ref_seq=scaffold3684_contigs=1, transcript_loc=scaffold3684_contigs=1:1173-1653 Augustus predicted protein sequence Tobacco scaffold3684_contigs=1~1173-1653 RasGEF_N PF00618.15 g62312.t1 - 0.033 14.2 5 8.2 6.5 0.2 3 1 1 1 2 2 2 0 RasGEF N-terminal motif | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:404786-405209 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~404786-405209 DUF3498 PF12004.3 g59650.t1 - 0.0038 16.4 3.6 0.0043 16.2 2.5 1 1 0 0 1 1 1 1 Domain of unknown function (DUF3498) | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:23912-24636 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~23912-24636 zf-CCHC PF00098.18 g74051.t1 - 0.1 12.5 4.7 0.21 11.5 3.3 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:454699-454959 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~454699-454959 DUF947 PF06102.7 g62662.t1 - 0.024 14.4 0.1 0.038 13.8 0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF947) | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:164475-164945 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~164475-164945 Cwf_Cwc_15 PF04889.7 g49320.t1 - 0.34 10.5 17.2 0.38 10.4 11.9 1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1125_contigs=3, transcript_loc=scaffold1125_contigs=3:112441-112764 Augustus predicted protein sequence Tobacco scaffold1125_contigs=3~112441-112764 ATHILA PF03078.10 g76530.t1 - 1.1E-015 57.1 0.6 9.8E-012 44.1 0.1 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:1290-2222 Augustus predicted protein sequence Tobacco scaffold1615_contigs=2~1290-2222 DUF4165 PF13752.1 g99824.t1 - 0.035 13.8 0 0.047 13.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4165) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:67750-68220 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~67750-68220 UBN2_2 PF14227.1 g87698.t1 - 0.0096 15.4 0.2 1.2 8.6 0 2.6 1 1 2 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:142998-143609 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~142998-143609 Reo_sigmaC PF04582.7 g45211.t1 - 0.32 10.1 2.7 0.37 9.9 1.9 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:77854-78531 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~77854-78531 DUF1347 PF07079.6 g40666.t1 - 0.052 11.7 0 0.058 11.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:240377-240661 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~240377-240661 Cwf_Cwc_15 PF04889.7 g2688.t1 - 0.11 12.1 2.4 0.14 11.8 1.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:92864-93152 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~92864-93152 Transposase_28 PF04195.7 g87292.t1 - 0.041 13.1 0 0.046 13 0 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:235717-235968 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~235717-235968 FAM176 PF14851.1 g77532.t1 - 0.032 13.9 0.6 0.051 13.2 0.4 1.3 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:293252-293698 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~293252-293698 Arch_fla_DE PF04659.8 g116384.t1 - 0.023 14.4 0 0.032 14 0 1.2 1 0 0 1 1 1 0 Archaeal flagella protein | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:245325-245969 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~245325-245969 Atrophin-1 PF03154.10 g85500.t1 - 0.023 12.8 2 0.022 12.9 1.4 1 1 0 0 1 1 1 0 Atrophin-1 family | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:245759-246100 Augustus predicted protein sequence Tobacco scaffold1834_contigs=13~245759-246100 NAM-associated PF14303.1 g66176.t1 - 0.00048 20.4 0.9 0.00053 20.3 0.6 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1437_contigs=6, transcript_loc=scaffold1437_contigs=6:98010-98255 Augustus predicted protein sequence Tobacco scaffold1437_contigs=6~98010-98255 LPP20 PF02169.11 g104973.t1 - 1 9.5 5.5 1.7 8.8 3.8 1.6 1 1 0 1 1 1 0 LPP20 lipoprotein | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:22911-23228 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~22911-23228 MHCassoc_trimer PF08831.5 g115615.t1 - 0.023 14.5 0.6 0.044 13.6 0.4 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:797018-797308 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~797018-797308 Gag_p17 PF00540.13 g57267.t1 - 0.013 15.3 0.3 0.023 14.4 0.2 1.4 1 0 0 1 1 1 0 gag gene protein p17 (matrix protein) | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:80394-84146 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~80394-84146 Myb_DNA-bind_4 PF13837.1 g1721.t1 - 0.00053 20 4 0.0008 19.4 2.8 1.2 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:16274-18724 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~16274-18724 LON PF02190.11 g83951.t1 - 0.095 12.3 0.2 0.096 12.3 0.2 1.1 1 0 0 1 1 1 0 ATP-dependent protease La (LON) domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:160003-160346 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~160003-160346 Retrotrans_gag PF03732.12 g101624.t1 - 0.049 13.6 0.1 0.096 12.7 0.1 1.6 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2214_contigs=5, transcript_loc=scaffold2214_contigs=5:41125-41631 Augustus predicted protein sequence Tobacco scaffold2214_contigs=5~41125-41631 YhfH PF14149.1 g53673.t1 - 0.056 13.2 0 0.085 12.6 0 1.3 1 0 0 1 1 1 0 YhfH-like protein | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:78143-79300 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~78143-79300 Filament PF00038.16 g22693.t1 - 0.0014 18.1 2.3 0.0017 17.8 1.6 1 1 0 0 1 1 1 1 Intermediate filament protein | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:131971-132252 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~131971-132252 DUF2406 PF10295.4 g13484.t1 - 0.0077 16.7 0.1 0.01 16.3 0 1.2 1 0 0 1 1 1 1 Uncharacterised protein (DUF2406) | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:156767-157003 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~156767-157003 DUF2135 PF09906.4 g50030.t1 - 0.067 13.1 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2135) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:86637-87258 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~86637-87258 Rb_C PF08934.5 g50672.t1 - 0.085 12.4 1.2 2.8 7.5 0.9 2.1 1 1 0 1 1 1 0 Rb C-terminal domain | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:470-1687 Augustus predicted protein sequence Tobacco scaffold1143_contigs=1~470-1687 DUF4017 PF13209.1 g88263.t1 - 0.01 15.5 0 0.016 14.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4017) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:70583-70879 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~70583-70879 PDZ_2 PF13180.1 g33150.t1 - 0.082 12.8 0 0.11 12.3 0 1.2 1 0 0 1 1 1 0 PDZ domain | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:555717-556040 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~555717-556040 RnfC_N PF13375.1 g5976.t1 - 0.086 12.5 0.2 0.098 12.3 0.1 1.1 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain | Ref_seq=scaffold287_contigs=2, transcript_loc=scaffold287_contigs=2:29538-29801 Augustus predicted protein sequence Tobacco scaffold287_contigs=2~29538-29801 ESPR PF13018.1 g9813.t1 - 0.1 12.2 0.5 0.16 11.6 0.4 1.3 1 0 0 1 1 1 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:78772-79014 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~78772-79014 Cut12 PF11500.3 g81194.t1 - 0.03 13.9 0.2 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Spindle pole body formation-associated protein | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:147065-147421 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~147065-147421 RVT_3 PF13456.1 g74462.t1 - 0.00041 20 0 0.00045 19.9 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:328647-328934 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~328647-328934 B3 PF02362.16 g98247.t1 - 0.0046 16.5 0.2 0.0079 15.8 0.1 1.4 1 0 0 1 1 1 1 B3 DNA binding domain | Ref_seq=scaffold2155_contigs=2, transcript_loc=scaffold2155_contigs=2:25726-27132 Augustus predicted protein sequence Tobacco scaffold2155_contigs=2~25726-27132 MTBP_C PF14920.1 g7884.t1 - 0.0054 16.2 0.4 0.006 16.1 0.2 1 1 0 0 1 1 1 1 MDM2-binding | Ref_seq=scaffold324_contigs=5, transcript_loc=scaffold324_contigs=5:26232-26710 Augustus predicted protein sequence Tobacco scaffold324_contigs=5~26232-26710 Exonuc_X-T_C PF08411.5 g18302.t1 - 0.15 11 0.1 0.18 10.8 0 1 1 0 0 1 1 1 0 Exonuclease C-terminal | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:82974-83204 Augustus predicted protein sequence Tobacco scaffold549_contigs=4~82974-83204 zf-CCHC PF00098.18 g25820.t1 - 0.000024 24 0.7 0.000039 23.3 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:151336-151656 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~151336-151656 UPF0236 PF06782.6 g7542.t1 - 0.11 10.9 0 0.12 10.8 0 1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0236) | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:325526-326628 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~325526-326628 Cortex-I_coil PF09304.5 g82679.t1 - 0.04 13.9 4.2 0.065 13.2 2.9 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold1760_contigs=2, transcript_loc=scaffold1760_contigs=2:41352-42209 Augustus predicted protein sequence Tobacco scaffold1760_contigs=2~41352-42209 Phlebovirus_G1 PF07243.6 g9879.t1 - 0.063 11.4 0.1 0.071 11.2 0.1 1 1 0 0 1 1 1 0 Phlebovirus glycoprotein G1 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:249872-250645 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~249872-250645 DUF1438 PF07270.6 g90258.t1 - 0.016 15 0 0.023 14.5 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1438) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:457366-458318 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~457366-458318 UBN2_2 PF14227.1 g84403.t1 - 0.0045 16.5 0.5 0.0059 16.1 0.3 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:209344-211933 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~209344-211933 Cnd2 PF05786.9 g70758.t1 - 0.12 10.8 0 0.13 10.7 0 1 1 0 0 1 1 1 0 Condensin complex subunit 2 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:114606-114845 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~114606-114845 ATHILA PF03078.10 g94613.t1 - 0.0000011 27.5 0 0.0000014 27.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:174562-175597 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~174562-175597 Cwf_Cwc_15 PF04889.7 g7638.t1 - 0.032 13.9 6.3 0.04 13.6 4.4 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:526397-527327 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~526397-527327 AvrPphF-ORF-2 PF09143.5 g92421.t1 - 0.1 12.2 0.2 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 AvrPphF-ORF-2 | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:29472-29831 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~29472-29831 DUF2380 PF09533.5 g66631.t1 - 0.27 10.6 2.7 0.44 9.9 1.9 1.4 1 1 0 1 1 1 0 Predicted lipoprotein of unknown function (DUF2380) | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:302926-303327 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~302926-303327 NESP55 PF06390.7 g91589.t1 - 0.035 13.4 1.3 0.045 13.1 0.9 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1974_contigs=1, transcript_loc=scaffold1974_contigs=1:37590-38592 Augustus predicted protein sequence Tobacco scaffold1974_contigs=1~37590-38592 UPF0184 PF03670.8 g64641.t1 - 0.19 11.9 0.7 0.35 11 0.2 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:197283-197504 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~197283-197504 FUSC PF04632.7 g59243.t1 - 0.045 12.2 0.5 0.049 12 0.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:970-1613 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~970-1613 FlgN PF05130.7 g67009.t1 - 0.006 16.8 1.3 0.0075 16.5 0.9 1.1 1 0 0 1 1 1 1 FlgN protein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:342794-343993 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~342794-343993 RAP-1 PF03085.10 g29976.t1 - 0.0063 15.8 1.1 0.0073 15.6 0.7 1 1 0 0 1 1 1 1 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:139778-142070 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~139778-142070 SecG PF03840.9 g50533.t1 - 0.16 11.6 0.2 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 Preprotein translocase SecG subunit | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:245955-246335 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~245955-246335 Delta_lysin PF05372.6 g68048.t1 - 0.041 13.2 0 0.073 12.4 0 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:251226-251819 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~251226-251819 RNase_H2-Ydr279 PF09468.5 g11763.t1 - 0.23 10.6 4.7 0.32 10.1 3.3 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:98756-99541 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~98756-99541 DUF2827 PF10933.3 g95315.t1 - 0.13 10.7 0 0.15 10.5 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2827) | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:90975-91241 Augustus predicted protein sequence Tobacco scaffold2057_contigs=11~90975-91241 End3 PF12761.2 g66340.t1 - 0.045 13.3 0 8.5 5.9 0 2.2 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:206657-207226 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~206657-207226 DsrD PF08679.6 g122100.t1 - 0.13 12.2 0.2 0.19 11.7 0.1 1.2 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:226404-226835 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~226404-226835 Bap31 PF05529.7 g91368.t1 - 0.076 12.4 2.7 0.11 11.9 1.9 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:28313-28854 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~28313-28854 DUF1537 PF07005.6 g55993.t1 - 0.014 15 0 0.016 14.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF1537 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:318355-318662 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~318355-318662 DUF4286 PF14114.1 g53618.t1 - 0.081 13.2 0.3 0.42 10.9 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:208179-208754 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~208179-208754 NSs PF11073.3 g9401.t1 - 0.03 13.5 0 0.039 13.2 0 1.1 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like | Ref_seq=scaffold362_contigs=5, transcript_loc=scaffold362_contigs=5:6754-7320 Augustus predicted protein sequence Tobacco scaffold362_contigs=5~6754-7320 SURF6 PF04935.7 g81309.t1 - 0.82 8.9 14 2.8 7.1 0.2 2.2 1 1 1 2 2 2 0 Surfeit locus protein 6 | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:109560-110753 Augustus predicted protein sequence Tobacco scaffold1728_contigs=6~109560-110753 HupH_C PF04809.8 g103048.t1 - 0.0065 16.2 0 4 7.2 0 2.1 2 0 0 2 2 2 2 HupH hydrogenase expression protein, C-terminal conserved region | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:31689-32404 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~31689-32404 PurS PF02700.9 g119642.t1 - 0.036 14 0.4 0.058 13.3 0.3 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:131477-131827 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~131477-131827 Rep_fac_C PF08542.6 g104507.t1 - 0.12 12.4 0 0.15 12 0 1.1 1 0 0 1 1 1 0 Replication factor C C-terminal domain | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:341217-341908 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~341217-341908 YpM PF09144.5 g54028.t1 - 0.098 12.6 0 0.12 12.3 0 1.1 1 0 0 1 1 1 0 Yersinia pseudotuberculosis mitogen | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:66854-67279 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~66854-67279 zf-CCHC_4 PF14392.1 g79222.t1 - 0.00074 19.1 0.6 0.0016 18.1 0.4 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:282561-283448 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~282561-283448 DAN PF03045.10 g98897.t1 - 0.065 12.6 1.8 0.092 12.1 1.3 1.2 1 0 0 1 1 1 0 DAN domain | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:6240-7256 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~6240-7256 Cortex-I_coil PF09304.5 g3276.t1 - 0.05 13.6 0.2 0.085 12.9 0.1 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:171427-173185 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~171427-173185 P5-ATPase PF12409.3 g106367.t1 - 0.016 15 0.4 0.026 14.3 0.2 1.3 1 0 0 1 1 1 0 P5-type ATPase cation transporter | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:38974-41081 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~38974-41081 Mn_catalase PF05067.7 g31902.t1 - 0.064 12 0 0.64 8.7 0 1.9 1 1 1 2 2 2 0 Manganese containing catalase | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:158380-160079 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~158380-160079 Securin PF04856.8 g31968.t1 - 0.15 11.7 1.2 0.17 11.5 0.8 1 1 0 0 1 1 1 0 Securin sister-chromatid separation inhibitor | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:62460-63093 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~62460-63093 53-BP1_Tudor PF09038.5 g65637.t1 - 0.019 14.7 0 0.028 14.2 0 1.2 1 0 0 1 1 1 0 Tumour suppressor p53-binding protein-1 Tudor | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:178334-178684 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~178334-178684 CTP_transf_1 PF01148.15 g58556.t1 - 0.026 14.1 2.6 0.03 14 1.8 1 1 0 0 1 1 1 0 Cytidylyltransferase family | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:144780-145037 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~144780-145037 PIP49_C PF12260.3 g5420.t1 - 2 7.8 5.8 1.6 8 2.4 1.8 2 0 0 2 2 2 0 Protein-kinase domain of FAM69 | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:11513-12006 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~11513-12006 Prefoldin PF02996.12 g27350.t1 - 0.0016 18 2.3 0.002 17.7 1.6 1.1 1 0 0 1 1 1 1 Prefoldin subunit | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:43390-43638 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~43390-43638 ENOD40 PF08247.6 g59390.t1 - 0.01 15.5 0.3 0.018 14.8 0.2 1.4 1 0 0 1 1 1 0 ENOD40 protein | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:37882-38091 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~37882-38091 Med12 PF09497.5 g29336.t1 - 0.11 12.4 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:257136-258239 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~257136-258239 Filament PF00038.16 g74366.t1 - 0.0069 15.8 0.2 0.0095 15.4 0.2 1.1 1 0 0 1 1 1 1 Intermediate filament protein | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:81115-82011 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~81115-82011 CENP-F_leu_zip PF10473.4 g126368.t1 - 0.083 12.7 1.8 2.8 7.7 0.1 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:69997-70308 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~69997-70308 DUF3944 PF13099.1 g18154.t1 - 0.016 14.6 0.1 0.037 13.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3944) | Ref_seq=scaffold546_contigs=9, transcript_loc=scaffold546_contigs=9:82467-82885 Augustus predicted protein sequence Tobacco scaffold546_contigs=9~82467-82885 BRCT PF00533.21 g96818.t1 - 0.12 12.5 0.3 0.2 11.8 0.2 1.4 1 1 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:33486-33797 Augustus predicted protein sequence Tobacco scaffold2122_contigs=11~33486-33797 DUF4355 PF14265.1 g2630.t1 - 0.23 11.4 8 0.071 13 3.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4355) | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:68075-68554 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~68075-68554 FH2 PF02181.18 g84451.t1 - 0.026 13.4 0.1 0.043 12.7 0.1 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:14093-14884 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~14093-14884 DUF3645 PF12359.3 g79522.t1 - 0.063 12.4 2.1 5.3 6.2 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3645) | Ref_seq=scaffold1696_contigs=1, transcript_loc=scaffold1696_contigs=1:31402-31710 Augustus predicted protein sequence Tobacco scaffold1696_contigs=1~31402-31710 Tachykinin PF02202.11 g91757.t1 - 0.33 10.7 1.5 0.73 9.6 0 2.3 2 0 0 2 2 2 0 Tachykinin family | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:61023-61301 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~61023-61301 IFR3_antag PF14754.1 g12829.t1 - 0.13 11.2 0 0.34 9.8 0 1.6 1 1 1 2 2 2 0 Papain-like auto-proteinase | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:6159-6551 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~6159-6551 RNA_bind_2 PF10133.4 g26852.t1 - 0.093 12.7 0.1 0.26 11.3 0 1.7 1 1 0 1 1 1 0 Predicted RNA-binding protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:403315-403647 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~403315-403647 Troponin-I_N PF11636.3 g102715.t1 - 2.9 7.6 6.2 7.4 6.3 4.3 1.7 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:116119-116926 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~116119-116926 Sp100 PF03172.8 g35256.t1 - 0.021 14.8 0 0.033 14.1 0 1.4 1 0 0 1 1 1 0 Sp100 domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:286160-289502 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~286160-289502 PRCC PF10253.4 g7469.t1 - 0.053 14.2 0.3 0.069 13.8 0.2 1.5 1 1 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:145420-145707 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~145420-145707 CAP_N PF01213.14 g67440.t1 - 0.013 14.7 1.6 0.016 14.5 1.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:283853-284158 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~283853-284158 TniQ PF06527.6 g45696.t1 - 0.019 15.1 0.1 0.029 14.5 0.1 1.4 1 1 0 1 1 1 0 TniQ | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:401004-401571 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~401004-401571 DUF2264 PF10022.4 g119101.t1 - 0.019 13.6 0.4 0.022 13.4 0.3 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:942285-942683 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~942285-942683 MYT1 PF08474.6 g74648.t1 - 0.031 13.7 0.2 0.16 11.4 0 1.9 1 1 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:7886-8476 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~7886-8476 RVT_3 PF13456.1 g11021.t1 - 0.000013 24.9 0 0.00002 24.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold400_contigs=4, transcript_loc=scaffold400_contigs=4:63267-66024 Augustus predicted protein sequence Tobacco scaffold400_contigs=4~63267-66024 Spidroin_MaSp PF11260.3 g18647.t1 - 0.057 13.5 0.3 0.084 12.9 0.2 1.3 1 0 0 1 1 1 0 Major ampullate spidroin 1 and 2 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:367867-368196 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~367867-368196 zf-CCHC PF00098.18 g102811.t1 - 0.083 12.8 0.5 0.083 12.8 0.3 2.1 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2269_contigs=7, transcript_loc=scaffold2269_contigs=7:25590-26291 Augustus predicted protein sequence Tobacco scaffold2269_contigs=7~25590-26291 VEGF_C PF14554.1 g65305.t1 - 0.013 15.3 0.6 0.023 14.4 0.4 1.4 1 0 0 1 1 1 0 VEGF heparin-binding domain | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:233724-235132 Augustus predicted protein sequence Tobacco scaffold1403_contigs=11~233724-235132 Vps5 PF09325.5 g70625.t1 - 0.12 11.6 0.2 0.14 11.3 0.1 1.1 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:679042-680375 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~679042-680375 DUF3667 PF12412.3 g107456.t1 - 0.34 10.2 2.1 0.62 9.4 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:51312-51899 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~51312-51899 RebB PF11747.3 g66720.t1 - 0.036 13.9 1.5 0.098 12.5 0.1 2 2 0 0 2 2 2 0 Killing trait | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:510783-511934 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~510783-511934 Myc_N PF01056.13 g102445.t1 - 0.043 12.9 2 0.046 12.8 1.4 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2246_contigs=8, transcript_loc=scaffold2246_contigs=8:122176-122583 Augustus predicted protein sequence Tobacco scaffold2246_contigs=8~122176-122583 Head_binding PF09008.5 g130242.t1 - 0.065 13.2 0 0.09 12.8 0 1.2 1 0 0 1 1 1 0 Head binding | Ref_seq=scaffold3734_contigs=1, transcript_loc=scaffold3734_contigs=1:784-1071 Augustus predicted protein sequence Tobacco scaffold3734_contigs=1~784-1071 FH2 PF02181.18 g15064.t1 - 0.0051 15.7 0.5 0.0061 15.4 0.4 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:148548-148880 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~148548-148880 ACC_central PF08326.7 g10106.t1 - 0.14 10.2 0.4 0.16 10 0.3 1 1 0 0 1 1 1 0 Acetyl-CoA carboxylase, central region | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:121554-122393 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~121554-122393 Omega-toxin PF06357.6 g11106.t1 - 0.03 13.8 4.7 0.091 12.3 3.3 1.7 1 0 0 1 1 1 0 Omega-atracotoxin | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:97751-98401 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~97751-98401 TAP42 PF04177.7 g34195.t1 - 0.084 11.8 0 0.12 11.3 0 1.2 1 0 0 1 1 1 0 TAP42-like family | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:214136-214954 Augustus predicted protein sequence Tobacco scaffold846_contigs=10~214136-214954 Phage_head_chap PF11113.3 g57433.t1 - 0.074 12.9 0 0.1 12.4 0 1.3 1 0 0 1 1 1 0 Head assembly gene product | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:164526-165231 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~164526-165231 Resolvase PF00239.16 g128298.t1 - 0.1 12.4 0 0.14 12 0 1.2 1 0 0 1 1 1 0 Resolvase, N terminal domain | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:17492-17812 Augustus predicted protein sequence Tobacco scaffold2861_contigs=1~17492-17812 Bombinin PF05298.6 g106965.t1 - 0.084 12.3 0.1 0.098 12.1 0 1.1 1 0 0 1 1 1 0 Bombinin | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:148533-148841 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~148533-148841 DUF2393 PF09624.5 g12893.t1 - 0.22 11 3.1 0.32 10.5 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:18898-19230 Augustus predicted protein sequence Tobacco scaffold436_contigs=4~18898-19230 AGT PF11440.3 g107595.t1 - 0.076 11.8 0 0.085 11.7 0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:43527-44911 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~43527-44911 DUF1657 PF07870.6 g23089.t1 - 0.1 12.2 1.2 0.17 11.6 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1657) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:84820-85331 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~84820-85331 GUN4 PF05419.7 g20737.t1 - 0.049 13.4 0 0.054 13.3 0 1.1 1 0 0 1 1 1 0 GUN4-like | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:164525-164770 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~164525-164770 Exostosin PF03016.10 g57563.t1 - 0.091 11.7 0.1 0.097 11.6 0 1.1 1 0 0 1 1 1 0 Exostosin family | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:153939-154229 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~153939-154229 Nop14 PF04147.7 g58826.t1 - 0.0065 14.4 7.3 0.0083 14.1 5.1 1.3 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:48144-50354 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~48144-50354 DUF1180 PF06679.7 g65494.t1 - 0.5 10.2 2 0.61 9.9 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:38016-38240 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~38016-38240 EBV-NA3 PF05009.7 g43448.t1 - 0.2 10.9 2.2 0.21 10.8 1.5 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:301469-301696 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~301469-301696 NOA36 PF06524.7 g59482.t1 - 0.76 8.9 3.7 0.91 8.7 2.5 1.1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:141467-141985 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~141467-141985 UBN2 PF14223.1 g101309.t1 - 0.0071 16.1 0.4 0.015 15 0.1 1.7 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:240206-240709 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~240206-240709 PsbP PF01789.11 g100095.t1 - 0.12 11.7 0 0.2 11 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:32345-33632 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~32345-33632 Reprolysin_3 PF13582.1 g102137.t1 - 0.049 14.1 0 0.2 12.1 0 1.9 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:178953-181086 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~178953-181086 DUF605 PF04652.11 g94228.t1 - 0.17 11.2 2.5 0.14 11.5 1.8 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:281945-282456 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~281945-282456 U1snRNP70_N PF12220.3 g92129.t1 - 0.14 12.5 3.5 0.16 12.3 2.5 1.1 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:55702-55911 Augustus predicted protein sequence Tobacco scaffold1983_contigs=2~55702-55911 DUF1413 PF07205.6 g5801.t1 - 0.08 12.4 0.1 0.099 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1413) | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:983-1303 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~983-1303 Gly-rich_Ago1 PF12764.2 g68715.t1 - 0.19 12.3 2.4 0.26 11.9 1.6 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1478_contigs=6, transcript_loc=scaffold1478_contigs=6:1-215 Augustus predicted protein sequence Tobacco scaffold1478_contigs=6~1-215 DUF2615 PF11027.3 g470.t1 - 0.12 12.3 0 0.16 11.8 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2615) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:216392-216634 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~216392-216634 MHCassoc_trimer PF08831.5 g64447.t1 - 0.1 12.4 0.1 0.14 12 0.1 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:69002-69229 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~69002-69229 H-K_ATPase_N PF09040.6 g16559.t1 - 0.063 13.3 0.2 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain | Ref_seq=scaffold522_contigs=18, transcript_loc=scaffold522_contigs=18:15995-17219 Augustus predicted protein sequence Tobacco scaffold522_contigs=18~15995-17219 APC_15aa PF05972.6 g33170.t1 - 0.051 13.5 0.1 0.15 12.1 0 1.8 1 0 0 1 1 1 0 APC 15 residue motif | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:615761-616111 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~615761-616111 DEPP PF15343.1 g56650.t1 - 0.068 12.7 0.4 0.074 12.6 0.3 1.1 1 0 0 1 1 1 0 Decidual protein induced by progesterone family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:576504-576876 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~576504-576876 SARA PF11409.3 g56446.t1 - 0.79 9.6 6.4 0.25 11.3 1.6 2.1 1 1 1 2 2 2 0 Smad anchor for receptor activation (SARA) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:154309-154545 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~154309-154545 WASH-7_C PF14746.1 g8084.t1 - 0.033 13.8 0.4 0.054 13 0.1 1.5 1 1 0 1 1 1 0 WASH complex subunit 7, C-terminal | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:11325-11960 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~11325-11960 BH3 PF15285.1 g63829.t1 - 0.1 12.1 0 0.27 10.7 0 1.8 1 0 0 1 1 1 0 Beclin-1 BH3 domain, Bcl-2-interacting | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:9257-9523 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~9257-9523 DBD_Tnp_Mut PF03108.10 g19491.t1 - 0.000071 22.3 0.1 0.00013 21.4 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:678692-679342 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~678692-679342 MIS13 PF08202.6 g45975.t1 - 0.036 13.1 0 0.049 12.6 0 1.2 1 0 0 1 1 1 0 Mis12-Mtw1 protein family | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:195006-196011 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~195006-196011 Cortex-I_coil PF09304.5 g59381.t1 - 0.047 13.7 1.3 0.061 13.3 0.9 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:23129-23571 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~23129-23571 zf-CCHC PF00098.18 g64469.t1 - 0.00017 21.3 0.8 0.0003 20.5 0.6 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:149937-153566 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~149937-153566 KxDL PF10241.4 g55626.t1 - 0.091 12.6 0.8 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:121357-122181 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~121357-122181 FAR1 PF03101.10 g106771.t1 - 0.06 13.8 0.2 0.067 13.7 0.1 1.2 1 0 0 1 1 1 0 FAR1 DNA-binding domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:550807-552746 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~550807-552746 KIF1B PF12423.3 g20079.t1 - 0.18 11.8 1.4 1 9.4 0.1 2.1 2 0 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:51712-51963 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~51712-51963 Period_C PF12114.3 g31198.t1 - 4.5 6.8 7 5.3 6.6 4.8 1 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold787_contigs=2, transcript_loc=scaffold787_contigs=2:1-992 Augustus predicted protein sequence Tobacco scaffold787_contigs=2~1-992 FAM60A PF15396.1 g69892.t1 - 0.16 11.7 0 0.19 11.4 0 1.2 1 0 0 1 1 1 0 Protein Family FAM60A | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:436361-439417 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~436361-439417 FXR1P_C PF12235.3 g106444.t1 - 2.9 7.9 12.6 0.66 10 6 1.8 2 0 0 2 2 2 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:206888-207833 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~206888-207833 Sas10 PF09368.5 g66306.t1 - 0.068 13.3 0 0.094 12.8 0 1.1 1 0 0 1 1 1 0 Sas10 C-terminal domain | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:142695-143977 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~142695-143977 Arch_fla_DE PF04659.8 g52790.t1 - 0.12 12.1 0.1 0.31 10.8 0 1.7 1 1 1 2 2 2 0 Archaeal flagella protein | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1097478-1097726 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1097478-1097726 HGWP PF03578.10 g34349.t1 - 0.012 14.8 1.2 0.034 13.4 0.8 1.7 1 0 0 1 1 1 0 HGWP repeat | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:50451-53175 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~50451-53175 HpaP PF09483.5 g39960.t1 - 0.16 11.8 4.4 0.21 11.4 3 1.2 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:59078-59671 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~59078-59671 Sporozoite_P67 PF05642.6 g77505.t1 - 0.028 12.2 3.4 0.028 12.2 2.4 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:227705-227980 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~227705-227980 HALZ PF02183.13 g126789.t1 - 0.00084 19 10.1 0.016 14.9 1.7 3.4 2 1 1 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold2805_contigs=1, transcript_loc=scaffold2805_contigs=1:2486-3651 Augustus predicted protein sequence Tobacco scaffold2805_contigs=1~2486-3651 DUF3633 PF12315.3 g127735.t1 - 0.071 12.4 0.2 0.08 12.2 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3633) | Ref_seq=scaffold2835_contigs=1, transcript_loc=scaffold2835_contigs=1:7899-10094 Augustus predicted protein sequence Tobacco scaffold2835_contigs=1~7899-10094 Nop14 PF04147.7 g70624.t1 - 0.54 8.1 4.2 0.65 7.8 2.9 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:662777-668109 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~662777-668109 PMEI PF04043.10 g74159.t1 - 0.000000075 32.4 3.4 0.000000086 32.2 2.3 1.1 1 0 0 1 1 1 1 Plant invertase/pectin methylesterase inhibitor | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:633211-633726 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~633211-633726 DUF4219 PF13961.1 g36519.t1 - 0.000071 22.1 0.1 0.0001 21.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:156816-157058 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~156816-157058 RVT_3 PF13456.1 g121553.t1 - 0.038 13.7 0 0.042 13.6 0 1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2734_contigs=11, transcript_loc=scaffold2734_contigs=11:45199-45405 Augustus predicted protein sequence Tobacco scaffold2734_contigs=11~45199-45405 Apis_Csd PF11671.3 g81900.t1 - 0.091 12.5 12 0.13 12 8.3 1.3 1 0 0 1 1 1 0 Complementary sex determiner protein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:23939-24247 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~23939-24247 DUF1039 PF06287.6 g75913.t1 - 0.08 12.8 0 0.12 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1039) | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:177897-178280 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~177897-178280 RVT_3 PF13456.1 g96773.t1 - 0.016 14.9 0 0.022 14.5 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:368951-369244 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~368951-369244 DUF605 PF04652.11 g50692.t1 - 2 7.7 9.2 2.2 7.5 6.4 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:28257-28841 Augustus predicted protein sequence Tobacco scaffold1143_contigs=1~28257-28841 Rod_cone_degen PF15201.1 g2610.t1 - 0.09 12.6 0.3 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 Progressive rod-cone degeneration | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:19693-20605 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~19693-20605 PilP PF04351.8 g106689.t1 - 0.15 11.9 0 0.2 11.5 0 1.1 1 0 0 1 1 1 0 Pilus assembly protein, PilP | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:360927-361322 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~360927-361322 DUF4116 PF13475.1 g65583.t1 - 0.019 14.4 0.3 0.042 13.3 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:18162-18913 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~18162-18913 Vir_act_alpha_C PF10400.4 g58235.t1 - 0.094 13 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:385613-385900 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~385613-385900 FH2 PF02181.18 g107259.t1 - 0.01 14.7 0.1 0.019 13.8 0 1.4 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1045922-1046839 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1045922-1046839 Apelin PF15360.1 g107107.t1 - 0.081 13.1 1.4 0.21 11.8 1 1.7 1 0 0 1 1 1 0 APJ endogenous ligand | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:661363-663270 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~661363-663270 OmdA PF13376.1 g120415.t1 - 0.067 12.8 0 0.096 12.3 0 1.3 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:110736-111855 Augustus predicted protein sequence Tobacco scaffold2724_contigs=11~110736-111855 Ilar_coat PF01787.11 g102147.t1 - 0.023 14.2 0 0.026 14.1 0 1.2 1 0 0 1 1 1 0 Ilarvirus coat protein | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:204528-205429 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~204528-205429 PrmA PF06325.8 g88621.t1 - 0.051 12.6 0.1 0.054 12.6 0.1 1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) | Ref_seq=scaffold1932_contigs=3, transcript_loc=scaffold1932_contigs=3:21791-22359 Augustus predicted protein sequence Tobacco scaffold1932_contigs=3~21791-22359 ATHILA PF03078.10 g25340.t1 - 0.012 14.1 0 0.014 14 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:104793-105017 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~104793-105017 Ldh_1_C PF02866.13 g1047.t1 - 0.089 12.5 0 0.13 11.9 0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:177409-178374 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~177409-178374 DUF3471 PF11954.3 g98944.t1 - 0.0097 15.7 0 1.3 8.8 0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF3471) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:74131-74783 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~74131-74783 Tropomyosin PF00261.15 g71696.t1 - 0.06 12.4 0.1 0.067 12.2 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:281938-282384 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~281938-282384 bZIP_1 PF00170.16 g64064.t1 - 0.73 9.8 6.9 1.2 9.1 1.1 2.7 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:265141-266142 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~265141-266142 DBD_Tnp_Mut PF03108.10 g28867.t1 - 0.000029 23.5 0.3 0.00004 23.1 0.2 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:510529-510969 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~510529-510969 DUF3982 PF13138.1 g78357.t1 - 0.09 12.6 0 0.15 11.9 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3982) | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:561473-561835 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~561473-561835 Baculo_gp41 PF04700.7 g47504.t1 - 0.082 12.3 0.1 0.13 11.7 0.1 1.3 1 1 0 1 1 1 0 Structural glycoprotein p40/gp41 conserved region | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:136314-136837 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~136314-136837 zf-CCHC_5 PF14787.1 g110489.t1 - 0.00041 19.7 1.3 0.00041 19.7 0.9 2.1 2 1 0 2 2 2 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:79618-80677 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~79618-80677 NeuB PF03102.9 g106407.t1 - 0.056 12.5 0.2 0.65 9 0 2 1 1 0 2 2 2 0 NeuB family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:127894-128220 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~127894-128220 Humanin PF15040.1 g28738.t1 - 3 7.1 5.1 0.4 9.9 0.3 1.9 2 0 0 2 2 2 0 Humanin family | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:152927-153926 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~152927-153926 Brix PF04427.13 g83735.t1 - 0.0076 15.9 0 0.016 14.8 0 1.4 1 0 0 1 1 1 1 Brix domain | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:133045-134306 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~133045-134306 BAR_2 PF10455.4 g50905.t1 - 0.099 11.5 0.1 0.12 11.3 0 1.1 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:27866-28466 Augustus predicted protein sequence Tobacco scaffold1147_contigs=3~27866-28466 Chorion_2 PF03964.10 g55876.t1 - 0.35 11.4 7.7 4.8 7.7 0.6 2.2 2 0 0 2 2 2 0 Chorion family 2 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:17871-18783 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~17871-18783 DUF1035 PF06281.7 g119538.t1 - 0.057 13.2 2.2 6.2 6.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1035) | Ref_seq=scaffold2713_contigs=17, transcript_loc=scaffold2713_contigs=17:306649-307184 Augustus predicted protein sequence Tobacco scaffold2713_contigs=17~306649-307184 Toxin_9 PF02819.10 g21902.t1 - 0.23 11.5 3.4 0.3 11.1 2.4 1.2 1 0 0 1 1 1 0 Spider toxin | Ref_seq=scaffold604_contigs=5, transcript_loc=scaffold604_contigs=5:223268-223626 Augustus predicted protein sequence Tobacco scaffold604_contigs=5~223268-223626 DUF591 PF04569.9 g116392.t1 - 0.3 11.1 4 0.38 10.8 2.6 1.3 1 1 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:263300-263542 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~263300-263542 NADase_NGA PF07461.6 g118555.t1 - 0.039 12.6 0 0.043 12.5 0 1 1 0 0 1 1 1 0 Nicotine adenine dinucleotide glycohydrolase (NADase) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:171146-171442 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~171146-171442 UNC-93 PF05978.11 g54625.t1 - 0.16 11.4 0.4 0.22 10.9 0.3 1.1 1 0 0 1 1 1 0 Ion channel regulatory protein UNC-93 | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:380054-381376 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~380054-381376 DUF1858 PF08984.6 g69242.t1 - 0.048 13.3 0 0.081 12.5 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1858) | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:50070-50375 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~50070-50375 Xylanase PF13201.1 g31859.t1 - 0.034 12.9 0 0.036 12.8 0 1.1 1 0 0 1 1 1 0 Putative glycoside hydrolase xylanase | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:89781-90574 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~89781-90574 DUF4404 PF14357.1 g114121.t1 - 6.6 7.2 6.9 18 5.8 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:308621-309316 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~308621-309316 DUF4566 PF15130.1 g92114.t1 - 0.029 13.5 0.1 0.032 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4566) | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:22279-22584 Augustus predicted protein sequence Tobacco scaffold1983_contigs=2~22279-22584 Involucrin_N PF10583.4 g53182.t1 - 2.6 8.4 5.4 2.7 8.3 0.1 2.3 2 0 0 2 2 2 0 Involucrin of squamous epithelia N-terminus | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:116503-117649 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~116503-117649 Filament PF00038.16 g35786.t1 - 0.013 15 2.1 0.017 14.5 1.5 1.1 1 0 0 1 1 1 0 Intermediate filament protein | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:390505-391063 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~390505-391063 Jnk-SapK_ap_N PF09744.4 g7127.t1 - 0.0029 17.5 2.2 0.0035 17.3 1.5 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:101062-101394 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~101062-101394 DUF3812 PF12757.2 g116778.t1 - 0.099 12.6 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3812) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:159617-159970 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~159617-159970 UPF0547 PF10571.4 g71271.t1 - 0.0053 16.4 0 0.051 13.2 0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:394987-395590 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~394987-395590 Tropomyosin PF00261.15 g92677.t1 - 0.11 11.6 4.7 0.11 11.5 2.4 1.4 1 1 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:270080-270400 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~270080-270400 CENP-T PF15511.1 g69862.t1 - 1.4 8 12.9 1.9 7.6 9 1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:352930-353598 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~352930-353598 Imm30 PF15594.1 g53764.t1 - 0.00053 20 0 0.14 12.2 0 2.1 2 0 0 2 2 2 2 Immunity protein 30 | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:91176-92893 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~91176-92893 Imm10 PF15562.1 g112064.t1 - 0.12 12.1 1.5 0.19 11.5 1 1.3 1 1 0 1 1 1 0 Immunity protein 10 | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:78606-78941 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~78606-78941 DUF2984 PF11203.3 g14537.t1 - 0.073 13.1 0.3 0.081 13 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2984) | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:144472-145022 Augustus predicted protein sequence Tobacco scaffold476_contigs=10~144472-145022 HR1 PF02185.11 g45625.t1 - 0.029 14 3.7 0.041 13.6 2.6 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:231618-233763 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~231618-233763 NSs PF11073.3 g118355.t1 - 0.13 11.4 0 0.19 10.9 0 1.1 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:524072-524961 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~524072-524961 ENOD40 PF08247.6 g101184.t1 - 6.1 6.8 6 66 3.6 0.1 3.8 3 0 0 3 3 3 0 ENOD40 protein | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:241909-242160 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~241909-242160 LAT PF15234.1 g92232.t1 - 2.1 7.7 6.4 1 8.8 3.2 1.5 1 1 0 1 1 1 0 Linker for activation of T-cells | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:57533-58346 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~57533-58346 MBOAT_2 PF13813.1 g21946.t1 - 0.027 14.5 1.3 0.037 14 0.9 1.2 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family | Ref_seq=scaffold606_contigs=3, transcript_loc=scaffold606_contigs=3:8194-9920 Augustus predicted protein sequence Tobacco scaffold606_contigs=3~8194-9920 Erf4 PF10256.4 g78391.t1 - 0.053 13.3 0.2 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 7/ERF4 family | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:770416-771120 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~770416-771120 Ice_nucleation PF00818.12 g72440.t1 - 0.055 12.8 2.6 0.11 11.9 1.8 1.5 1 0 0 1 1 1 0 Ice nucleation protein repeat | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1127418-1127965 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1127418-1127965 zf-CCHC PF00098.18 g74195.t1 - 0.00014 21.6 0.8 0.00014 21.6 0.6 1.5 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:753791-754207 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~753791-754207 zf-BED PF02892.10 g31531.t1 - 0.00041 20 1.6 0.0085 15.8 0.1 2.7 2 0 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:308879-314580 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~308879-314580 DUF2872 PF11071.3 g90914.t1 - 0.11 12.3 0 0.13 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2872) | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:129986-130447 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~129986-130447 SLR1-BP PF07333.7 g57144.t1 - 0.0022 18.1 11.1 0.0029 17.8 7.7 1.1 1 0 0 1 1 1 1 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:594315-595211 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~594315-595211 DUF4611 PF15387.1 g58717.t1 - 0.038 14.1 1 0.046 13.8 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:547164-547493 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~547164-547493 DUF3321 PF11968.3 g78753.t1 - 0.062 12.9 0.1 0.07 12.7 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase (DUF3321) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:90731-91165 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~90731-91165 Spo12 PF05032.7 g113036.t1 - 0.16 11.6 0.5 1.6 8.4 0.1 2.1 2 0 0 2 2 2 0 Spo12 family | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:215811-216215 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~215811-216215 RVT_3 PF13456.1 g90601.t1 - 0.00022 20.9 0 0.00036 20.2 0 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:443989-444324 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~443989-444324 ER-remodelling PF14755.1 g5059.t1 - 0.02 14.9 0.1 0.024 14.7 0.1 1.1 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:233400-233854 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~233400-233854 FH2 PF02181.18 g28049.t1 - 0.021 13.7 0 0.026 13.4 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:823643-824281 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~823643-824281 Cellulose_synt PF03552.9 g113564.t1 - 3.8 5.6 5.8 4.9 5.3 4 1.1 1 0 0 1 1 1 0 Cellulose synthase | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:105557-109082 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~105557-109082 DUF2201_N PF13203.1 g42765.t1 - 0.0002 20.6 0.6 0.00025 20.3 0.4 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:541877-542830 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~541877-542830 Humanin PF15040.1 g34169.t1 - 1 8.6 4.8 15 4.9 0.3 2.6 2 0 0 2 2 2 0 Humanin family | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:137070-138657 Augustus predicted protein sequence Tobacco scaffold846_contigs=10~137070-138657 Gyro_capsid PF04162.7 g30806.t1 - 0.39 8.9 2.7 0.47 8.6 1.9 1 1 0 0 1 1 1 0 Gyrovirus capsid protein (VP1) | Ref_seq=scaffold781_contigs=18, transcript_loc=scaffold781_contigs=18:114939-115313 Augustus predicted protein sequence Tobacco scaffold781_contigs=18~114939-115313 Cation_ATPase_C PF00689.16 g64246.t1 - 0.046 13.2 0.4 0.073 12.5 0.3 1.3 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:257884-259484 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~257884-259484 Noelin-1 PF12308.3 g126858.t1 - 0.14 11.9 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 Neurogenesis glycoprotein | Ref_seq=scaffold2806_contigs=1, transcript_loc=scaffold2806_contigs=1:44748-45216 Augustus predicted protein sequence Tobacco scaffold2806_contigs=1~44748-45216 DUF2992 PF11208.3 g94504.t1 - 0.063 13.1 0.1 0.082 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2992) | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:33165-33488 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~33165-33488 CCDC155 PF14662.1 g120061.t1 - 0.0011 18.5 3.7 0.0013 18.4 2.6 1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:359893-360102 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~359893-360102 zf-CCHC PF00098.18 g66993.t1 - 0.00018 21.2 0.6 0.0003 20.5 0.4 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:305154-305864 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~305154-305864 Sensor_TM1 PF13755.1 g4420.t1 - 0.13 11.8 0 0.23 11 0 1.4 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:189685-191906 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~189685-191906 TRAP_alpha PF03896.11 g111048.t1 - 1.5 7.7 5.5 2.8 6.8 0.6 2.2 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:141139-143517 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~141139-143517 AAA_33 PF13671.1 g88081.t1 - 0.0071 16.2 0 0.011 15.5 0 1.3 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:68454-72630 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~68454-72630 LZ_Tnp_IS481 PF13011.1 g111238.t1 - 0.2 12 0.8 0.47 10.8 0.1 2 2 1 0 2 2 2 0 leucine-zipper of insertion element IS481 | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:33485-34414 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~33485-34414 Pneumo_NS1 PF03438.8 g47021.t1 - 0.0055 16.5 0 0.0096 15.7 0 1.4 1 1 0 1 1 1 1 Pneumovirus NS1 protein | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:368974-370714 Augustus predicted protein sequence Tobacco scaffold1083_contigs=11~368974-370714 YebO PF13974.1 g6775.t1 - 0.1 12.3 0.2 0.13 12 0.2 1.1 1 0 0 1 1 1 0 YebO-like protein | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:147334-148966 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~147334-148966 zf-C2H2_6 PF13912.1 g95037.t1 - 0.00011 22 0.6 0.00016 21.4 0.4 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger | Ref_seq=scaffold2052_contigs=6, transcript_loc=scaffold2052_contigs=6:82310-82912 Augustus predicted protein sequence Tobacco scaffold2052_contigs=6~82310-82912 RNase_H2-Ydr279 PF09468.5 g118405.t1 - 0.29 10.3 6.8 0.45 9.6 4.7 1.3 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:622983-624236 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~622983-624236 NESP55 PF06390.7 g122470.t1 - 0.019 14.3 3.1 0.019 14.3 2.1 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:82699-83172 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~82699-83172 DUF423 PF04241.10 g19590.t1 - 0.049 13.5 1.6 0.096 12.6 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF423) | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:76596-76940 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~76596-76940 zf-CCHC PF00098.18 g51303.t1 - 0.0079 16 0.8 0.012 15.5 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:364054-364404 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~364054-364404 DUF2370 PF10176.4 g101462.t1 - 9.1 5.5 8.5 5.8 6.1 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2370) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:78046-79414 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~78046-79414 KASH PF10541.4 g80215.t1 - 0.055 13.3 0.1 0.5 10.2 0 2.2 2 0 0 2 2 2 0 Nuclear envelope localisation domain | Ref_seq=scaffold1710_contigs=11, transcript_loc=scaffold1710_contigs=11:320738-321100 Augustus predicted protein sequence Tobacco scaffold1710_contigs=11~320738-321100 MSP1a PF11670.3 g103052.t1 - 0.084 12.6 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:61156-61903 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~61156-61903 P2X_receptor PF00864.14 g21774.t1 - 0.067 11.8 0 0.067 11.8 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:156852-157917 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~156852-157917 FdhE PF04216.7 g75379.t1 - 0.049 13.3 0.1 0.071 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:291910-292667 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~291910-292667 CENP-R PF06729.7 g54834.t1 - 0.054 13.1 6.1 0.063 12.9 3.7 1.4 1 1 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:533562-533957 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~533562-533957 PD-C2-AF1 PF09310.5 g63885.t1 - 0.1 11.7 0 0.12 11.5 0 1.1 1 0 0 1 1 1 0 POU domain, class 2, associating factor 1 | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:174309-174915 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~174309-174915 CCDC144C PF14915.1 g107215.t1 - 0.033 13.1 3.6 0.045 12.6 2.5 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:936281-942028 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~936281-942028 MnhB PF04039.8 g56986.t1 - 0.01 15.8 0 0.012 15.6 0 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter | Ref_seq=scaffold1244_contigs=5, transcript_loc=scaffold1244_contigs=5:11744-12013 Augustus predicted protein sequence Tobacco scaffold1244_contigs=5~11744-12013 VGCC_beta4Aa_N PF12052.3 g39559.t1 - 0.033 14 0.2 0.051 13.4 0.1 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:59348-60197 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~59348-60197 DUF4201 PF13870.1 g72661.t1 - 0.0015 18 6.9 0.0025 17.2 4.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:352200-353162 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~352200-353162 zf-dskA_traR PF01258.12 g48243.t1 - 0.042 13.5 0.9 0.091 12.5 0.3 1.7 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger | Ref_seq=scaffold1106_contigs=3, transcript_loc=scaffold1106_contigs=3:29741-30473 Augustus predicted protein sequence Tobacco scaffold1106_contigs=3~29741-30473 2C_adapt PF08793.5 g63476.t1 - 0.89 9.4 2.9 2.3 8.1 0.8 2.2 1 1 1 2 2 2 0 2-cysteine adaptor domain | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:27918-28511 Augustus predicted protein sequence Tobacco scaffold1375_contigs=5~27918-28511 DUF1412 PF07203.6 g41406.t1 - 0.14 12 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1412) | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:219212-219427 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~219212-219427 HeH PF12949.2 g95879.t1 - 0.48 10 2.3 8.2 6 0 3.1 3 0 0 3 3 3 0 HeH/LEM domain | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:214679-218649 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~214679-218649 MscS_porin PF12795.2 g15675.t1 - 0.023 13.9 7.8 0.029 13.7 5.4 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:60228-60923 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~60228-60923 NAM-associated PF14303.1 g119904.t1 - 0.0022 18.3 2.1 0.0027 18 1.5 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:490186-490668 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~490186-490668 GEMIN8 PF15348.1 g6431.t1 - 0.002 18.2 0.1 0.0023 18 0.1 1 1 0 0 1 1 1 1 Gemini of Cajal bodies-associated protein 8 | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:183318-183656 Augustus predicted protein sequence Tobacco scaffold296_contigs=6~183318-183656 Tropomyosin_1 PF12718.2 g102325.t1 - 0.014 15.2 3.3 0.03 14.1 2.3 1.6 1 1 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold2237_contigs=22, transcript_loc=scaffold2237_contigs=22:32769-34503 Augustus predicted protein sequence Tobacco scaffold2237_contigs=22~32769-34503 Toxin-JAB1 PF15659.1 g85313.t1 - 0.03 14.2 0 0.038 13.8 0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:183805-184065 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~183805-184065 FH2 PF02181.18 g103685.t1 - 0.033 13 0 0.036 12.9 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:58860-59162 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~58860-59162 DUF4631 PF15450.1 g77425.t1 - 0.0000057 24.8 3.1 0.0000065 24.7 2.1 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4631) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:47052-47537 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~47052-47537 IFT43 PF15305.1 g104314.t1 - 0.032 14.2 0.9 0.036 14 0.6 1.2 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:491962-492349 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~491962-492349 SOBP PF15279.1 g1954.t1 - 0.33 11.2 2.8 0.38 11 1.9 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:67735-68322 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~67735-68322 Cleaved_Adhesin PF07675.6 g6145.t1 - 0.036 13.6 0 0.045 13.3 0 1.2 1 0 0 1 1 1 0 Cleaved Adhesin Domain | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:132378-132749 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~132378-132749 DUF723 PF05265.8 g67287.t1 - 0.11 12.3 0 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF723) | Ref_seq=scaffold1446_contigs=1, transcript_loc=scaffold1446_contigs=1:71476-71694 Augustus predicted protein sequence Tobacco scaffold1446_contigs=1~71476-71694 TPK_B1_binding PF04265.9 g107097.t1 - 0.13 11.9 0 0.2 11.3 0 1.3 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, vitamin B1 binding domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:637598-638506 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~637598-638506 FAE1_CUT1_RppA PF08392.7 g19498.t1 - 0.00074 18.6 0 0.00098 18.2 0 1.1 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:686766-688593 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~686766-688593 Phosphorylase PF00343.15 g107981.t1 - 0.04 11.8 0 0.044 11.6 0 1.1 1 0 0 1 1 1 0 Carbohydrate phosphorylase | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:26793-27110 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~26793-27110 BATS PF06968.8 g26328.t1 - 0.057 13.2 0.1 0.077 12.8 0 1.4 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:85388-85672 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~85388-85672 Gp-FAR-1 PF05823.7 g116644.t1 - 0.003 17.5 0.7 0.0037 17.2 0.5 1.1 1 0 0 1 1 1 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:33736-34472 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~33736-34472 RVT_3 PF13456.1 g82914.t1 - 0.038 13.7 0 0.049 13.3 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1776_contigs=16, transcript_loc=scaffold1776_contigs=16:89944-90231 Augustus predicted protein sequence Tobacco scaffold1776_contigs=16~89944-90231 SLT_L PF14718.1 g102945.t1 - 0.12 12.1 1.4 0.3 10.8 1 1.7 1 1 0 1 1 1 0 Soluble lytic murein transglycosylase L domain | Ref_seq=scaffold2275_contigs=2, transcript_loc=scaffold2275_contigs=2:4366-4698 Augustus predicted protein sequence Tobacco scaffold2275_contigs=2~4366-4698 Paramecium_SA PF01508.11 g76657.t1 - 0.22 11.7 2.9 0.35 11.1 2 1.4 1 1 0 1 1 1 0 Paramecium surface antigen domain | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:13901-14158 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~13901-14158 DUF1560 PF07597.6 g89414.t1 - 0.087 12.8 0 0.17 11.8 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1560) | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:89653-90300 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~89653-90300 Defensin_1 PF00323.14 g107348.t1 - 0.75 10.2 5 6.5 7.1 0.2 2.5 2 0 0 2 2 2 0 Mammalian defensin | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1208701-1210103 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1208701-1210103 UBN2_2 PF14227.1 g3238.t1 - 0.0000066 25.6 0.1 0.0000069 25.6 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:64762-64986 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~64762-64986 ERp29 PF07749.7 g23101.t1 - 0.00017 22.1 0.1 0.00022 21.7 0.1 1.2 1 0 0 1 1 1 1 Endoplasmic reticulum protein ERp29, C-terminal domain | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:106401-107844 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~106401-107844 Cloacin_immun PF03513.9 g120944.t1 - 0.068 13.2 1.8 0.61 10.1 0.2 2.3 1 1 1 2 2 2 0 Cloacin immunity protein | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:73973-74807 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~73973-74807 Retrotrans_gag PF03732.12 g22800.t1 - 0.037 14 0.1 0.049 13.7 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:388051-388311 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~388051-388311 YihI PF04220.7 g10629.t1 - 0.2 11 0.3 14 5 0 2.1 2 0 0 2 2 2 0 Der GTPase activator (YihI) | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:26258-27021 Augustus predicted protein sequence Tobacco scaffold389_contigs=8~26258-27021 PY_rept_46 PF09689.5 g25334.t1 - 0.1 12.9 3.5 0.27 11.6 2.4 1.7 1 0 0 1 1 1 0 Plasmodium yoelii repeat (PY_rept_46) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:93217-93621 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~93217-93621 ATHILA PF03078.10 g36422.t1 - 0.00035 19.2 0 0.00035 19.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:56824-57027 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~56824-57027 TOMM6 PF15184.1 g91590.t1 - 0.13 11.6 0 0.16 11.3 0 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit TOM6 homolog | Ref_seq=scaffold1974_contigs=1, transcript_loc=scaffold1974_contigs=1:39228-40083 Augustus predicted protein sequence Tobacco scaffold1974_contigs=1~39228-40083 Radial_spoke_3 PF06098.6 g92815.t1 - 0.14 11.1 6.1 0.15 10.9 4.3 1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:301816-302085 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~301816-302085 RE_ScaI PF09569.5 g120171.t1 - 0.033 13.6 0 0.035 13.5 0 1.1 1 0 0 1 1 1 0 ScaI restriction endonuclease | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:195394-195769 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~195394-195769 zf-CCHC PF00098.18 g128272.t1 - 0.00014 21.6 1 0.00022 20.9 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2859_contigs=1, transcript_loc=scaffold2859_contigs=1:9788-10507 Augustus predicted protein sequence Tobacco scaffold2859_contigs=1~9788-10507 DUF936 PF06075.7 g26838.t1 - 0.13 11.2 0.1 0.15 10.9 0.1 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:385489-386518 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~385489-386518 UEV PF05743.8 g93529.t1 - 0.12 12 0.3 15 5.2 0 3.2 2 1 1 3 3 3 0 UEV domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:46969-49056 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~46969-49056 HGWP PF03578.10 g43401.t1 - 9.2 5.6 7.6 0.44 9.9 0.7 2.2 2 1 0 2 2 2 0 HGWP repeat | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:151699-151935 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~151699-151935 NDUFA12 PF05071.11 g67769.t1 - 0.057 13.8 0 0.094 13.1 0 1.3 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase subunit NDUFA12 | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:255006-255368 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~255006-255368 PI31_Prot_C PF08577.6 g88317.t1 - 0.11 13.2 1.3 0.33 11.6 0.9 1.9 1 0 0 1 1 1 0 PI31 proteasome regulator | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:78256-79740 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~78256-79740 VEGF_C PF14554.1 g109614.t1 - 0.039 13.7 0.5 3.8 7.3 0 2.3 2 0 0 2 2 2 0 VEGF heparin-binding domain | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:137403-138891 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~137403-138891 Leptin PF02024.10 g96175.t1 - 0.028 14 0.1 0.043 13.4 0.1 1.3 1 0 0 1 1 1 0 Leptin | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:18479-19072 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~18479-19072 Rootletin PF15035.1 g4569.t1 - 0.0056 16.6 6.8 0.0056 16.6 4.7 1.5 1 1 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:153899-154372 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~153899-154372 DUF3233 PF11557.3 g87669.t1 - 0.063 12 0.7 0.082 11.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3233) | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:48823-50381 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~48823-50381 Herpes_gI PF01688.12 g25051.t1 - 0.26 10.4 1.1 0.3 10.2 0.8 1.2 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein I | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:47770-48217 Augustus predicted protein sequence Tobacco scaffold686_contigs=3~47770-48217 Allexi_40kDa PF05549.6 g66028.t1 - 0.1 11.8 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:173231-173578 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~173231-173578 Moricin PF06451.6 g70201.t1 - 0.063 12.7 0.2 6.9 6.2 0 2.4 3 0 0 3 3 3 0 Moricin | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:60379-60738 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~60379-60738 NAM-associated PF14303.1 g25884.t1 - 0.00072 19.9 0 0.00091 19.5 0 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:17648-19293 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~17648-19293 CytochromB561_N PF09786.4 g128299.t1 - 0.12 10.8 2.3 0.12 10.7 1.6 1 1 0 0 1 1 1 0 Cytochrome B561, N terminal | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:17826-18211 Augustus predicted protein sequence Tobacco scaffold2861_contigs=1~17826-18211 hSH3 PF14603.1 g41574.t1 - 0.0043 17 0.2 0.7 9.9 0 2.1 2 0 0 2 2 2 2 Helically-extended SH3 domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:349416-349981 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~349416-349981 TMF_DNA_bd PF12329.3 g57394.t1 - 0.026 14.3 1.3 0.045 13.5 0.9 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:76245-77112 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~76245-77112 GluR_Homer-bdg PF10606.4 g123474.t1 - 0.11 12.3 1 1.4 8.8 0.6 2.3 2 0 0 2 2 2 0 Homer-binding domain of metabotropic glutamate receptor | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:45375-45677 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~45375-45677 FRG2 PF15315.1 g90834.t1 - 5.7 6.8 7.3 6.4 6.7 0 2.4 2 1 1 3 3 3 0 Facioscapulohumeral muscular dystrophy candidate 2 | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:1465804-1466241 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~1465804-1466241 TOMM6 PF15184.1 g113963.t1 - 0.16 11.2 0.8 0.23 10.8 0.5 1.5 1 1 0 1 1 1 0 Mitochondrial import receptor subunit TOM6 homolog | Ref_seq=scaffold2640_contigs=8, transcript_loc=scaffold2640_contigs=8:1-2068 Augustus predicted protein sequence Tobacco scaffold2640_contigs=8~1-2068 Endothelin PF00322.12 g14794.t1 - 0.93 8.7 2.8 4.3 6.6 0.7 2.3 2 0 0 2 2 2 0 Endothelin family | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:208409-208696 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~208409-208696 Serglycin PF04360.7 g82061.t1 - 0.0032 17.1 0.9 0.0046 16.6 0.6 1.4 1 0 0 1 1 1 1 Serglycin | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:592489-595721 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~592489-595721 zf-LITAF-like PF10601.4 g34025.t1 - 7 6.5 16.3 17 5.3 11.3 1.7 1 0 0 1 1 1 0 LITAF-like zinc ribbon domain | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:85860-87375 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~85860-87375 Phage_int_SAM_5 PF13102.1 g63606.t1 - 0.011 15.7 4.6 0.014 15.4 3.2 1 1 0 0 1 1 1 0 Phage integrase SAM-like domain | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:83531-83869 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~83531-83869 UBN2 PF14223.1 g31431.t1 - 0.00000017 31 0.1 0.00000021 30.7 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:84746-84997 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~84746-84997 ATHILA PF03078.10 g22761.t1 - 0.0024 16.5 0 0.0024 16.5 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:277540-277860 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~277540-277860 PXPV PF12778.2 g6019.t1 - 0.14 11.8 1 0.22 11.2 0.7 1.4 1 0 0 1 1 1 0 PXPV repeat (3 copies) | Ref_seq=scaffold290_contigs=8, transcript_loc=scaffold290_contigs=8:20097-20378 Augustus predicted protein sequence Tobacco scaffold290_contigs=8~20097-20378 ATG16 PF08614.6 g44541.t1 - 0.022 14.5 3.4 0.031 14.1 2.4 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:371961-372580 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~371961-372580 DUF848 PF05852.6 g36571.t1 - 0.027 14.3 3.2 0.031 14.1 1.7 1.4 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:25250-25934 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~25250-25934 DNA_pol_phi PF04931.8 g38620.t1 - 0.051 11.3 7.7 0.045 11.5 5.3 1.2 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:210387-210853 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~210387-210853 HALZ PF02183.13 g52187.t1 - 0.012 15.2 5.7 0.36 10.5 0.3 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:663867-664526 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~663867-664526 HpaP PF09483.5 g91472.t1 - 0.38 10.6 4.3 0.47 10.3 3 1.1 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:53575-54035 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~53575-54035 Ribosomal_60s PF00428.14 g123848.t1 - 0.0082 16.5 2 0.013 15.9 1.4 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:727900-730563 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~727900-730563 Tachykinin PF02202.11 g21148.t1 - 0.086 12.5 0 0.28 10.9 0 1.9 1 0 0 1 1 1 0 Tachykinin family | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:65666-66175 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~65666-66175 Copper-fist PF00649.13 g98823.t1 - 0.55 9.4 5.6 0.38 10 2 2 2 0 0 2 2 2 0 Copper fist DNA binding domain | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:246792-247319 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~246792-247319 Pex24p PF06398.6 g115424.t1 - 0.048 12.4 0 0.049 12.4 0 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:326006-326305 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~326006-326305 Microvir_lysis PF04517.7 g45679.t1 - 0.12 12.1 4.4 0.21 11.3 3 1.4 1 0 0 1 1 1 0 Microvirus lysis protein (E), C terminus | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:367155-367466 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~367155-367466 DUF898 PF05987.8 g38552.t1 - 0.017 14 0.1 0.022 13.6 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:39058-41204 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~39058-41204 DUF2303 PF10065.4 g58094.t1 - 0.016 14.1 2.3 0.47 9.2 0.8 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2303) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:338413-339582 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~338413-339582 MCD PF05292.6 g98404.t1 - 0.12 11 0 0.19 10.3 0 1.3 1 1 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:82436-83008 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~82436-83008 DUF4088 PF13317.1 g2313.t1 - 0.041 13.2 0.1 0.049 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) | Ref_seq=scaffold208_contigs=2, transcript_loc=scaffold208_contigs=2:24255-24691 Augustus predicted protein sequence Tobacco scaffold208_contigs=2~24255-24691 Pollen_Ole_e_I PF01190.12 g92094.t1 - 0.1 12.4 0 0.13 12.1 0 1.1 1 0 0 1 1 1 0 Pollen proteins Ole e I like | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:202981-203313 Augustus predicted protein sequence Tobacco scaffold1982_contigs=6~202981-203313 Chalcone PF02431.10 g83804.t1 - 0.07 12.5 0.1 0.26 10.6 0.1 2 1 1 0 1 1 1 0 Chalcone-flavanone isomerase | Ref_seq=scaffold1805_contigs=6, transcript_loc=scaffold1805_contigs=6:2478-5052 Augustus predicted protein sequence Tobacco scaffold1805_contigs=6~2478-5052 Git3_C PF11970.3 g68897.t1 - 0.029 14.1 0.9 0.14 11.9 0.4 2.1 1 1 1 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 C-term | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:73328-73681 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~73328-73681 MUG113 PF13455.1 g33787.t1 - 0.14 12.6 0 0.19 12.1 0 1.3 1 0 0 1 1 1 0 Meiotically up-regulated gene 113 | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:530262-530591 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~530262-530591 DUF1436 PF07262.6 g74592.t1 - 0.13 11.7 0.3 7.9 5.9 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1436) | Ref_seq=scaffold1558_contigs=4, transcript_loc=scaffold1558_contigs=4:42171-42928 Augustus predicted protein sequence Tobacco scaffold1558_contigs=4~42171-42928 DCR PF14047.1 g57457.t1 - 1.1 9.6 3.5 1 9.6 0.4 2.3 1 1 2 3 3 3 0 Dppa2/4 conserved region | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:194224-194657 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~194224-194657 DMA PF03474.9 g65932.t1 - 0.15 11.9 0.5 14 5.6 0.1 3.1 3 0 0 3 3 3 0 DMRTA motif | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:98736-99326 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~98736-99326 zf-CCHC PF00098.18 g46799.t1 - 0.0001 22 2.6 0.0001 22 1.8 2.3 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:162680-162985 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~162680-162985 Podoplanin PF05808.6 g128517.t1 - 0.65 9.5 4.7 1.1 8.8 3.3 1.3 1 0 0 1 1 1 0 Podoplanin | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:19932-21933 Augustus predicted protein sequence Tobacco scaffold2873_contigs=1~19932-21933 ATHILA PF03078.10 g69204.t1 - 0.0022 16.6 0 0.065 11.8 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:674660-675169 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~674660-675169 ATHILA PF03078.10 g112005.t1 - 0.0000011 27.5 0.1 0.0000014 27.2 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:28608-28934 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~28608-28934 CAF1A PF12253.3 g60718.t1 - 0.05 13.7 3 0.063 13.3 2.1 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 subunit A | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:9728-10390 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~9728-10390 Cuticle_1 PF08140.6 g26766.t1 - 0.06 13.1 0.6 0.21 11.4 0 2.1 3 0 0 3 3 3 0 Crustacean cuticle protein repeat | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:282662-282913 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~282662-282913 FlxA PF14282.1 g68904.t1 - 0.081 12.8 4.6 0.1 12.5 3.2 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:86917-87165 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~86917-87165 Rsm1 PF08600.5 g75021.t1 - 0.12 12.2 0 0.14 12 0 1.2 1 0 0 1 1 1 0 Rsm1-like | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:325766-325996 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~325766-325996 Methyltransf_2 PF00891.13 g11947.t1 - 0.00049 19.3 0 0.00057 19.1 0 1.2 1 0 0 1 1 1 1 O-methyltransferase | Ref_seq=scaffold418_contigs=5, transcript_loc=scaffold418_contigs=5:87430-87885 Augustus predicted protein sequence Tobacco scaffold418_contigs=5~87430-87885 PGG PF13962.1 g41421.t1 - 0.000096 21.9 0.9 0.00015 21.3 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:255905-258888 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~255905-258888 Rep-A_N PF04057.7 g90164.t1 - 0.1 12.4 0 0.12 12.1 0 1.1 1 0 0 1 1 1 0 Replication factor-A protein 1, N-terminal domain | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:229481-229714 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~229481-229714 CAF-1_p150 PF11600.3 g94650.t1 - 0.000016 24.3 20.6 0.000016 24.3 14.3 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:231223-231618 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~231223-231618 NST1 PF13945.1 g59843.t1 - 0.14 12.2 2.7 0.15 12 1.9 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:289743-290203 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~289743-290203 DUF1182 PF06681.8 g5136.t1 - 0.04 13.1 0.9 0.059 12.5 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1182) | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:9532-10529 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~9532-10529 FAM101 PF15068.1 g37974.t1 - 0.13 11.6 0.2 8.3 5.7 0.1 1.9 1 1 1 2 2 2 0 FAM101 family | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:374107-375856 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~374107-375856 Tiny_TM_bacill PF09680.5 g76126.t1 - 0.22 10.9 1.3 0.33 10.3 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:14410-14685 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~14410-14685 C1_3 PF07649.7 g17911.t1 - 3 7.9 11.9 6.2 6.9 4.3 2.8 2 1 0 2 2 2 0 C1-like domain | Ref_seq=scaffold539_contigs=7, transcript_loc=scaffold539_contigs=7:26455-27168 Augustus predicted protein sequence Tobacco scaffold539_contigs=7~26455-27168 Peptidase_M66 PF10462.4 g71702.t1 - 0.14 10.9 0 0.15 10.8 0 1 1 0 0 1 1 1 0 Peptidase M66 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:299021-299296 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~299021-299296 Lip_prot_lig_C PF10437.4 g71558.t1 - 0.0044 16.6 0.5 2.8 7.6 0 2.6 2 1 1 3 3 3 2 Bacterial lipoate protein ligase C-terminus | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:21182-22526 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~21182-22526 Hex_IIIa PF02455.11 g114341.t1 - 0.67 8.5 3.6 1.9 7 1.8 1.7 1 1 1 2 2 2 0 Hexon-associated protein (IIIa) | Ref_seq=scaffold2646_contigs=41, transcript_loc=scaffold2646_contigs=41:56352-57651 Augustus predicted protein sequence Tobacco scaffold2646_contigs=41~56352-57651 DUF2681 PF10883.3 g23805.t1 - 0.12 12.5 2.4 0.16 12.2 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:106500-106802 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~106500-106802 RVT_3 PF13456.1 g33853.t1 - 0.0039 16.9 0.2 0.0096 15.6 0.2 1.6 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:863339-863832 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~863339-863832 CAF-1_p150 PF11600.3 g38376.t1 - 0.0012 18.2 26.6 0.0016 17.8 18.4 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:100514-101104 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~100514-101104 DUF4172 PF13776.1 g2882.t1 - 0.024 14.7 0.1 0.05 13.7 0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:208276-208581 Augustus predicted protein sequence Tobacco scaffold219_contigs=6~208276-208581 SH2_2 PF14633.1 g73449.t1 - 0.068 12.2 0.2 0.07 12.1 0.1 1 1 0 0 1 1 1 0 SH2 domain | Ref_seq=scaffold1540_contigs=16, transcript_loc=scaffold1540_contigs=16:185970-186314 Augustus predicted protein sequence Tobacco scaffold1540_contigs=16~185970-186314 ATHILA PF03078.10 g107267.t1 - 0.0084 14.7 0 0.0095 14.5 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1057518-1057766 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1057518-1057766 DUF3844 PF12955.2 g48394.t1 - 0.093 12.8 0 0.11 12.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3844) | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:189585-189827 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~189585-189827 p12I PF12233.3 g124691.t1 - 0.097 12.9 1.9 0.13 12.5 1.3 1.2 1 0 0 1 1 1 0 Human adult T cell leukemia/lymphoma virus protein | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:290662-290991 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~290662-290991 Antimicrobial12 PF08107.6 g6277.t1 - 0.15 11.6 1.2 0.43 10.1 0.7 1.8 2 0 0 2 2 2 0 Pleurocidin family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:399560-400375 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~399560-400375 DUF3617 PF12276.3 g64154.t1 - 0.23 10.8 1.4 0.27 10.6 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3617) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:21153-21900 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~21153-21900 Homeobox PF00046.24 g54171.t1 - 0.0091 15.5 0.1 0.013 15 0.1 1.3 1 0 0 1 1 1 1 Homeobox domain | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:65510-67117 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~65510-67117 Med17 PF10156.4 g3846.t1 - 0.31 9.2 3.5 0.38 8.9 2.4 1.1 1 0 0 1 1 1 0 Subunit 17 of Mediator complex | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:117568-117969 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~117568-117969 FAM176 PF14851.1 g105161.t1 - 0.27 10.8 1.4 0.31 10.7 1 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:446042-446254 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~446042-446254 Stathmin PF00836.14 g32784.t1 - 0.017 14.7 0.1 0.017 14.7 0.1 1.1 1 0 0 1 1 1 0 Stathmin family | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:30821-31971 Augustus predicted protein sequence Tobacco scaffold818_contigs=2~30821-31971 UBN2 PF14223.1 g51327.t1 - 0.00082 19.1 1.3 0.095 12.4 0 3 2 1 1 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:44394-45142 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~44394-45142 IFT43 PF15305.1 g128567.t1 - 0.043 13.8 0.6 0.055 13.4 0.4 1.3 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:605-1015 Augustus predicted protein sequence Tobacco scaffold2876_contigs=1~605-1015 DUF3306 PF11748.3 g18562.t1 - 0.11 13.1 0.3 0.17 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3306) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:231862-232389 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~231862-232389 DUF600 PF04634.7 g123256.t1 - 0.03 14.3 2 0.033 14.2 0.7 1.6 1 1 1 2 2 2 0 Protein of unknown function, DUF600 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:187981-188538 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~187981-188538 DUF3159 PF11361.3 g85137.t1 - 0.023 14.2 1.2 0.028 13.8 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:305462-307092 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~305462-307092 DUF1985 PF09331.6 g95924.t1 - 0.00033 20.4 0.1 0.00057 19.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2080_contigs=18, transcript_loc=scaffold2080_contigs=18:16224-16782 Augustus predicted protein sequence Tobacco scaffold2080_contigs=18~16224-16782 DUF4608 PF15381.1 g623.t1 - 4.4 7.5 8.8 1.4 9.1 2.5 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:33276-33548 Augustus predicted protein sequence Tobacco scaffold36_contigs=4~33276-33548 B3 PF02362.16 g1318.t1 - 3.4E-014 52.2 1.1 0.0000046 26.1 0.1 2.2 2 0 0 2 2 2 2 B3 DNA binding domain | Ref_seq=scaffold173_contigs=3, transcript_loc=scaffold173_contigs=3:10903-11553 Augustus predicted protein sequence Tobacco scaffold173_contigs=3~10903-11553 zf-CCHC_4 PF14392.1 g27863.t1 - 0.000003 26.7 0.2 0.0000043 26.2 0.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:433113-433600 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~433113-433600 DUF2413 PF10310.4 g125202.t1 - 0.0077 15 1.5 0.0089 14.8 1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2413) | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:228-1065 Augustus predicted protein sequence Tobacco scaffold2769_contigs=1~228-1065 DUF3011 PF11218.3 g31301.t1 - 0.036 13.8 1.4 0.039 13.7 0.9 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3011) | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:100808-101255 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~100808-101255 CobT PF06213.7 g50255.t1 - 1.6 7.7 8.4 1.8 7.6 5.8 1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:237690-237941 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~237690-237941 Mito_fiss_reg PF05308.6 g58936.t1 - 0.93 8.8 6.1 0.54 9.5 3.1 1.4 1 1 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:260480-261190 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~260480-261190 BEX PF04538.7 g94557.t1 - 0.0099 16 1.9 0.012 15.7 1.3 1.1 1 0 0 1 1 1 1 Brain expressed X-linked like family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:43934-44667 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~43934-44667 NAM-associated PF14303.1 g39198.t1 - 0.024 14.9 1 0.029 14.7 0.7 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:95874-96146 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~95874-96146 Dimer_Tnp_hAT PF05699.9 g99311.t1 - 0.00000068 28.8 0.6 0.000024 23.8 0.1 2.2 1 1 1 2 2 2 2 hAT family C-terminal dimerisation region | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:118678-120560 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~118678-120560 DUF4574 PF15141.1 g94383.t1 - 0.019 14.6 0.2 0.04 13.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4574) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:772147-772963 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~772147-772963 DUF2238 PF09997.4 g17270.t1 - 0.05 12.9 0 0.052 12.9 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:309581-310004 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~309581-310004 TSGP1 PF07771.6 g32731.t1 - 0.68 9.8 3.1 0.21 11.4 0.5 1.4 2 0 0 2 2 2 0 Tick salivary peptide group 1 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:780271-780525 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~780271-780525 Ribosomal_L15e PF00827.12 g31654.t1 - 0.027 13.9 2 0.046 13.2 1.4 1.4 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:27826-28914 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~27826-28914 Matrilin_ccoil PF10393.4 g130139.t1 - 0.021 14.1 0 0.039 13.3 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3527_contigs=1, transcript_loc=scaffold3527_contigs=1:1112-1507 Augustus predicted protein sequence Tobacco scaffold3527_contigs=1~1112-1507 Mem_trans PF03547.13 g109816.t1 - 0.026 12.8 0 0.027 12.7 0 1.1 1 0 0 1 1 1 0 Membrane transport protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:231380-233074 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~231380-233074 zf-CCHC_6 PF15288.1 g49319.t1 - 0.000024 23.9 1.4 0.000038 23.2 1 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1125_contigs=3, transcript_loc=scaffold1125_contigs=3:110221-110617 Augustus predicted protein sequence Tobacco scaffold1125_contigs=3~110221-110617 DUF2873 PF11395.3 g93525.t1 - 0.064 12.8 0.8 0.11 12.1 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:39721-41536 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~39721-41536 zf-CCHC PF00098.18 g26116.t1 - 0.00033 20.4 0.7 0.00047 19.9 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:388096-388416 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~388096-388416 RVT_3 PF13456.1 g81136.t1 - 6.7E-009 35.4 0.8 0.00025 20.7 0 2.2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:13806-14180 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~13806-14180 Phageshock_PspG PF09583.5 g3443.t1 - 0.26 11.3 2.2 0.38 10.8 1.5 1.2 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:62807-63222 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~62807-63222 LexA_DNA_bind PF01726.11 g8783.t1 - 0.11 12.1 0.1 0.23 11 0 1.7 1 1 0 1 1 1 0 LexA DNA binding domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:176295-176934 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~176295-176934 Retrotrans_gag PF03732.12 g6296.t1 - 0.014 15.4 1.1 0.017 15.2 0.1 1.6 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:445401-446267 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~445401-446267 DUF3524 PF12038.3 g28532.t1 - 0.11 12 0 0.13 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3524) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:148130-148516 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~148130-148516 PilX PF13681.1 g29761.t1 - 0.077 13.4 0 0.093 13.2 0 1.1 1 0 0 1 1 1 0 Type IV pilus assembly protein PilX C-term | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:49612-50572 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~49612-50572 DUF4219 PF13961.1 g42433.t1 - 0.005 16.2 0.1 0.0088 15.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:33367-33642 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~33367-33642 DUF1495 PF07381.6 g72442.t1 - 0.11 12.2 0.1 11 5.7 0 2.7 2 1 1 3 3 3 0 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold1506_contigs=2, transcript_loc=scaffold1506_contigs=2:167-1723 Augustus predicted protein sequence Tobacco scaffold1506_contigs=2~167-1723 HTH_40 PF14493.1 g127169.t1 - 0.0038 17.4 0.1 0.0041 17.3 0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:32670-33004 Augustus predicted protein sequence Tobacco scaffold2815_contigs=1~32670-33004 JHBP PF06585.6 g8948.t1 - 0.08 11.7 0 0.1 11.3 0 1.2 1 0 0 1 1 1 0 Haemolymph juvenile hormone binding protein (JHBP) | Ref_seq=scaffold347_contigs=6, transcript_loc=scaffold347_contigs=6:67873-68274 Augustus predicted protein sequence Tobacco scaffold347_contigs=6~67873-68274 Sina PF03145.11 g21788.t1 - 0.068 12.8 0.1 0.093 12.3 0.1 1.1 1 0 0 1 1 1 0 Seven in absentia protein family | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:171800-172154 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~171800-172154 FokI_N PF02981.10 g34046.t1 - 0.12 11.9 0 0.15 11.6 0 1.1 1 0 0 1 1 1 0 Restriction endonuclease FokI, recognition domain | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:158615-160012 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~158615-160012 Ebola_NP PF05505.7 g81889.t1 - 0.014 13.4 1.1 0.016 13.3 0.8 1 1 0 0 1 1 1 0 Ebola nucleoprotein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:11047-11352 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~11047-11352 NAF PF03822.9 g99950.t1 - 0.053 13.2 0.2 0.07 12.8 0.2 1.2 1 0 0 1 1 1 0 NAF domain | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:20443-20715 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~20443-20715 Upf2 PF04050.9 g66131.t1 - 0.062 13 3.1 0.082 12.6 1.9 1.4 1 1 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold1435_contigs=2, transcript_loc=scaffold1435_contigs=2:23893-26126 Augustus predicted protein sequence Tobacco scaffold1435_contigs=2~23893-26126 Rep_trans PF02486.14 g117938.t1 - 0.0058 16.1 0.3 0.0086 15.5 0.2 1.2 1 1 0 1 1 1 1 Replication initiation factor | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:58749-60051 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~58749-60051 LELP1 PF15042.1 g88091.t1 - 0.042 14 0.1 0.045 13.9 0 1.1 1 0 0 1 1 1 0 Late cornified envelope-like proline-rich protein 1 | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:117712-117981 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~117712-117981 Phage_holin_2 PF04550.7 g19250.t1 - 0.0038 17.2 1 0.0061 16.6 0.7 1.4 1 0 0 1 1 1 1 Phage holin family 2 | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:83717-84383 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~83717-84383 Mit_ribos_Mrp51 PF11709.3 g41765.t1 - 0.13 11.4 0 0.17 11 0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:163355-164359 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~163355-164359 RVT_3 PF13456.1 g14980.t1 - 0.00000013 31.3 0 0.00000017 30.8 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold485_contigs=10, transcript_loc=scaffold485_contigs=10:175385-175672 Augustus predicted protein sequence Tobacco scaffold485_contigs=10~175385-175672 zf-AN1 PF01428.11 g127904.t1 - 2.2 8.2 6.9 0.74 9.7 0.7 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:28174-28967 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~28174-28967 ABG_transport PF03806.8 g67847.t1 - 0.03 12.3 0 0.033 12.1 0 1.1 1 0 0 1 1 1 0 AbgT putative transporter family | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:470726-471025 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~470726-471025 Totivirus_coat PF05518.6 g58435.t1 - 0.011 13.5 3.4 0.013 13.3 2.3 1 1 0 0 1 1 1 0 Totivirus coat protein | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:39874-40350 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~39874-40350 Med9 PF07544.8 g63687.t1 - 0.041 13.6 0 0.049 13.3 0 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:76640-76915 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~76640-76915 AAA_33 PF13671.1 g14882.t1 - 0.054 13.3 0.1 0.066 13 0.1 1.2 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:183421-184148 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~183421-184148 Troponin-I_N PF11636.3 g5344.t1 - 3.7 7.3 9 63 3.3 0 2.8 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:63599-64506 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~63599-64506 Bunya_NS-S PF01104.12 g96564.t1 - 0.075 12.5 0 0.09 12.2 0 1.1 1 0 0 1 1 1 0 Bunyavirus non-structural protein NS-s | Ref_seq=scaffold2113_contigs=6, transcript_loc=scaffold2113_contigs=6:127268-127477 Augustus predicted protein sequence Tobacco scaffold2113_contigs=6~127268-127477 V_ATPase_I PF01496.14 g28775.t1 - 0.37 8.5 1.7 0.5 8.1 1.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:232042-233707 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~232042-233707 FA_hydroxylase PF04116.8 g101415.t1 - 0.067 13.5 5.8 0.092 13.1 4 1.3 1 0 0 1 1 1 0 Fatty acid hydroxylase superfamily | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:215694-215987 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~215694-215987 ATHILA PF03078.10 g117872.t1 - 0.000000043 32.1 0 0.000000047 32 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:155037-155402 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~155037-155402 IFP_35_N PF07334.8 g115591.t1 - 0.34 10.9 5.7 0.71 9.8 1.5 2.9 2 1 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:705761-706990 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~705761-706990 DUF1373 PF07117.6 g34768.t1 - 0.14 11.9 0.7 0.16 11.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1373) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:265977-266882 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~265977-266882 Metallophos_C PF14008.1 g129717.t1 - 0.012 15.6 0.1 2.1 8.5 0 2.2 2 0 0 2 2 2 0 Iron/zinc purple acid phosphatase-like protein C | Ref_seq=scaffold3034_contigs=1, transcript_loc=scaffold3034_contigs=1:1830-2472 Augustus predicted protein sequence Tobacco scaffold3034_contigs=1~1830-2472 DUF3552 PF12072.3 g96288.t1 - 0.0078 15.4 4.2 0.011 14.9 2.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:9877-11011 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~9877-11011 TGF_beta_GS PF08515.7 g24302.t1 - 0.22 10.8 1.8 0.37 10.1 1.3 1.3 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:1-147 Augustus predicted protein sequence Tobacco scaffold670_contigs=7~1-147 Tetradecapep PF08187.6 g20593.t1 - 0.016 14.9 0.3 0.058 13.2 0.1 2.1 1 1 1 2 2 2 0 Myoactive tetradecapeptides family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:520250-520456 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~520250-520456 DUF2956 PF11169.3 g1986.t1 - 0.18 11.7 8.2 0.33 10.9 5.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) | Ref_seq=scaffold198_contigs=2, transcript_loc=scaffold198_contigs=2:29755-30809 Augustus predicted protein sequence Tobacco scaffold198_contigs=2~29755-30809 DUF1693 PF07984.7 g51348.t1 - 0.11 11.6 0 0.13 11.3 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1693) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:89720-90007 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~89720-90007 DUF4078 PF13300.1 g1161.t1 - 0.082 13 0 0.1 12.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4078) | Ref_seq=scaffold96_contigs=2, transcript_loc=scaffold96_contigs=2:19681-20274 Augustus predicted protein sequence Tobacco scaffold96_contigs=2~19681-20274 Retrotrans_gag PF03732.12 g66229.t1 - 0.056 13.5 0 0.061 13.3 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:15241-15498 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~15241-15498 zf-CCHC PF00098.18 g54935.t1 - 0.00053 19.7 0.6 0.00053 19.7 0.4 1.7 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:168142-168960 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~168142-168960 Linker_histone PF00538.14 g57986.t1 - 0.12 12.5 0.2 0.15 12.1 0.2 1.2 1 0 0 1 1 1 0 linker histone H1 and H5 family | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:52690-52986 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~52690-52986 Med9 PF07544.8 g71708.t1 - 0.0027 17.3 0.3 0.044 13.5 0 2.3 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:309314-310238 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~309314-310238 SpvB PF03534.8 g123244.t1 - 0.13 11.2 0.2 0.15 11 0.1 1.1 1 0 0 1 1 1 0 Salmonella virulence plasmid 65kDa B protein | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:167563-167778 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~167563-167778 UBN2 PF14223.1 g30651.t1 - 0.0038 16.9 0 0.0056 16.4 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:95038-99264 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~95038-99264 Caldesmon PF02029.10 g1708.t1 - 0.11 10.8 1.1 0.13 10.6 0.7 1.1 1 0 0 1 1 1 0 Caldesmon | Ref_seq=scaffold192_contigs=3, transcript_loc=scaffold192_contigs=3:44833-45189 Augustus predicted protein sequence Tobacco scaffold192_contigs=3~44833-45189 Fimbrial_CS1 PF04449.7 g54753.t1 - 0.014 15.4 0.1 0.46 10.5 0 2.1 2 0 0 2 2 2 0 CS1 type fimbrial major subunit | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:241972-242792 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~241972-242792 DBD_Tnp_Mut PF03108.10 g3916.t1 - 6.8E-009 35.1 0 0.000000012 34.4 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:76025-76986 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~76025-76986 DUF3423 PF11903.3 g67190.t1 - 0.13 12 0 0.23 11.2 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3423) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:722396-722605 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~722396-722605 Lant_dehyd_C PF04738.8 g98345.t1 - 0.065 11.4 0.1 0.1 10.8 0 1.3 1 1 0 1 1 1 0 Lantibiotic dehydratase, C terminus | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:209441-211446 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~209441-211446 Sec23_BS PF08033.7 g41516.t1 - 0.13 12.8 0 0.13 12.7 0 1.2 1 0 0 1 1 1 0 Sec23/Sec24 beta-sandwich domain | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:168218-168439 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~168218-168439 UBA_e1_thiolCys PF10585.4 g45255.t1 - 2.6 7.4 5.7 8.6 5.8 0.1 2.6 2 0 0 2 2 2 0 Ubiquitin-activating enzyme active site | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:36970-37266 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~36970-37266 Fzo_mitofusin PF04799.8 g118021.t1 - 0.013 14.8 2 0.013 14.8 1.4 3.1 2 1 0 3 3 3 0 fzo-like conserved region | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:62987-64341 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~62987-64341 Late_protein_L2 PF00513.13 g10847.t1 - 0.11 11.3 0.2 0.12 11.2 0.2 1.1 1 0 0 1 1 1 0 Late Protein L2 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:8680-9018 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~8680-9018 DYW_deaminase PF14432.1 g82086.t1 - 0.17 11.9 0.4 0.9 9.5 0.3 1.9 1 1 0 1 1 1 0 DYW family of nucleic acid deaminases | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:641627-641917 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~641627-641917 TPR_MLP1_2 PF07926.7 g115230.t1 - 0.058 13.1 0.8 2.9 7.6 0.2 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:289326-290200 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~289326-290200 HXXSHH PF07586.6 g89936.t1 - 0.092 11.6 0.1 0.099 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:73190-75309 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~73190-75309 FAM176 PF14851.1 g109636.t1 - 0.025 14.2 1.1 0.032 13.8 0.8 1.1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:187950-188468 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~187950-188468 SH3_3 PF08239.6 g34830.t1 - 0.11 12.7 0 0.16 12.2 0 1.2 1 0 0 1 1 1 0 Bacterial SH3 domain | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:29727-30177 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~29727-30177 Gliadin PF13016.1 g38663.t1 - 4.7 7.4 8.7 0.96 9.6 3.6 1.8 1 1 0 1 1 1 0 Cys-rich Gliadin N-terminal | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:313598-313938 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~313598-313938 DUF2681 PF10883.3 g13792.t1 - 0.38 10.9 2.7 0.43 10.8 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:104833-105048 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~104833-105048 U3_assoc_6 PF08640.6 g42317.t1 - 0.037 13.7 0 0.055 13.2 0 1.2 1 0 0 1 1 1 0 U3 small nucleolar RNA-associated protein 6 | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:43243-43623 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~43243-43623 DUF3893 PF13032.1 g121107.t1 - 0.077 13.1 0.3 0.13 12.3 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3893) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:386422-386898 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~386422-386898 BLVR PF06375.6 g106596.t1 - 0.049 13.4 6.3 0.051 13.4 4.3 1.1 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:154459-154764 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~154459-154764 ATHILA PF03078.10 g23139.t1 - 0.015 13.8 0 0.75 8.3 0 2.1 2 0 0 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:242693-243724 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~242693-243724 TOBE PF03459.12 g95163.t1 - 0.39 10.8 4.8 9.5 6.4 0.1 3.9 2 1 1 3 3 3 0 TOBE domain | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:236349-236910 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~236349-236910 Mito_fiss_reg PF05308.6 g18392.t1 - 0.058 12.7 4.7 0.079 12.3 3.2 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:5973-6593 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~5973-6593 DUF976 PF06162.7 g107325.t1 - 0.065 12.7 0.1 0.083 12.3 0 1.1 1 0 0 1 1 1 0 Caenorhabditis elegans protein of unknown function (DUF976) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1169292-1169672 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1169292-1169672 DUF591 PF04569.9 g101882.t1 - 0.11 12.5 2.6 0.15 12 1.6 1.6 1 1 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:103254-103660 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~103254-103660 GOLD_2 PF13897.1 g45883.t1 - 0.054 13.7 0 0.067 13.4 0 1.1 1 0 0 1 1 1 0 Golgi-dynamics membrane-trafficking | Ref_seq=scaffold1051_contigs=2, transcript_loc=scaffold1051_contigs=2:21533-22017 Augustus predicted protein sequence Tobacco scaffold1051_contigs=2~21533-22017 DUF330 PF03886.8 g42982.t1 - 0.058 12.7 0 0.076 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF330) | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:103846-104642 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~103846-104642 DUF4219 PF13961.1 g83982.t1 - 0.00011 21.4 0.1 0.0002 20.6 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:230155-230845 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~230155-230845 Kinesin-related PF06548.6 g83224.t1 - 0.037 12.5 0.8 0.034 12.7 0.6 1.1 1 0 0 1 1 1 0 Kinesin-related | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:376717-376944 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~376717-376944 BNIP2 PF12496.3 g48070.t1 - 0.00058 20 0.4 0.0012 19 0.3 1.5 1 0 0 1 1 1 1 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:120769-122824 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~120769-122824 zf-BED PF02892.10 g14020.t1 - 0.00025 20.7 0.5 0.00062 19.4 0.3 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:9828-10139 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~9828-10139 CobT PF06213.7 g15685.t1 - 0.73 8.9 15.5 0.84 8.7 10.8 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:83972-84469 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~83972-84469 Viral_NABP PF05515.6 g107546.t1 - 0.019 15.2 1 1.9 8.7 0.1 2.1 2 0 0 2 2 2 0 Viral nucleic acid binding | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:289621-289989 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~289621-289989 TMPIT PF07851.8 g111857.t1 - 0.14 11.1 0.2 0.19 10.7 0.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein | Ref_seq=scaffold2594_contigs=17, transcript_loc=scaffold2594_contigs=17:91987-92277 Augustus predicted protein sequence Tobacco scaffold2594_contigs=17~91987-92277 Rota_NSP3 PF01665.11 g103230.t1 - 0.055 12.4 0.2 0.058 12.3 0.2 1.2 1 0 0 1 1 1 0 Rotavirus non-structural protein NSP3 | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:172534-173703 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~172534-173703 UPF0561 PF10573.4 g13872.t1 - 8.3 6.2 14.9 10 5.9 10.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:251351-251593 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~251351-251593 zf-RVT PF13966.1 g104436.t1 - 0.0002 21.6 1.2 0.00028 21.1 0.8 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:125945-126508 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~125945-126508 FrhB_FdhB_N PF04422.8 g44466.t1 - 0.13 12.1 0.1 0.22 11.4 0 1.3 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:159709-161262 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~159709-161262 RNA_pol_Rpc4 PF05132.9 g10474.t1 - 0.1 12.6 0.5 0.15 12 0.3 1.1 1 0 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:75750-76425 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~75750-76425 APOC4 PF15119.1 g126121.t1 - 0.024 14.6 0 0.033 14.1 0 1.3 1 0 0 1 1 1 0 Apolipoprotein C4 | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:14816-15570 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~14816-15570 YdjO PF14169.1 g63682.t1 - 0.055 12.9 0.1 0.092 12.2 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:61409-61936 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~61409-61936 Med30 PF11315.3 g55674.t1 - 0.19 11.8 1.2 10 6.2 0.3 2.8 2 1 0 3 3 3 0 Mediator complex subunit 30 | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:208278-208862 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~208278-208862 zf-HIT PF04438.11 g75325.t1 - 0.019 14.6 0.8 0.026 14.1 0.5 1.2 1 0 0 1 1 1 0 HIT zinc finger | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:158209-158478 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~158209-158478 ATHILA PF03078.10 g107363.t1 - 0.099 11.2 0.1 0.11 11 0.1 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1228172-1228507 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1228172-1228507 DUF3146 PF11344.3 g114146.t1 - 0.049 13 0.1 3.3 7.2 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3146) | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:36766-38906 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~36766-38906 Med4 PF10018.4 g47349.t1 - 0.034 13.5 5 0.037 13.4 3.5 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 | Ref_seq=scaffold1095_contigs=4, transcript_loc=scaffold1095_contigs=4:13412-14116 Augustus predicted protein sequence Tobacco scaffold1095_contigs=4~13412-14116 Exostosin PF03016.10 g43653.t1 - 0.098 11.6 0.2 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Exostosin family | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:294556-296405 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~294556-296405 Daxx PF03344.10 g66310.t1 - 0.26 9.7 18.8 0.27 9.6 13.1 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:149846-150271 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~149846-150271 DUF1013 PF06242.6 g117996.t1 - 0.089 12.7 0.1 0.095 12.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:11998-14459 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~11998-14459 Trypan_PARP PF05887.6 g99794.t1 - 8.4 6.2 12.4 11 5.8 8.6 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:18812-19303 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~18812-19303 Dishevelled PF02377.10 g54737.t1 - 0.032 14.4 0.3 0.032 14.4 0.2 1.6 2 0 0 2 2 2 0 Dishevelled specific domain | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:181234-181868 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~181234-181868 zf-CCHC PF00098.18 g5741.t1 - 0.00017 21.3 0.2 0.00037 20.2 0.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:350266-351225 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~350266-351225 zf-CCHC PF00098.18 g47684.t1 - 0.0022 17.8 1.6 0.0022 17.8 1.1 1.7 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:521810-522384 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~521810-522384 L_biotic_typeA PF04604.8 g70287.t1 - 0.065 12.8 0 0.094 12.3 0 1.3 1 0 0 1 1 1 0 Type-A lantibiotic | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:227067-227282 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~227067-227282 FH2 PF02181.18 g92730.t1 - 0.014 14.3 0.1 0.016 14.1 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:11045-11344 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~11045-11344 Gamma-thionin PF00304.15 g53793.t1 - 7.3 6.6 12.6 55 3.8 8.7 2 1 1 0 1 1 1 0 Gamma-thionin family | Ref_seq=scaffold1192_contigs=4, transcript_loc=scaffold1192_contigs=4:18791-20015 Augustus predicted protein sequence Tobacco scaffold1192_contigs=4~18791-20015 Peptidase_C48 PF02902.14 g13540.t1 - 0.086 12.4 0.2 0.17 11.4 0.1 1.6 1 1 0 1 1 1 0 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:32952-33251 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~32952-33251 UPF0126 PF03458.8 g126081.t1 - 2 8 7.2 0.83 9.3 0.8 2.2 2 0 0 2 2 2 0 UPF0126 domain | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:105521-105859 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~105521-105859 Synapsin_N PF10581.4 g103719.t1 - 0.00045 19.9 0.1 1.8 8.4 0 2.9 2 0 0 2 2 2 2 Synapsin N-terminal | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:6896-8201 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~6896-8201 UBN2 PF14223.1 g10576.t1 - 0.11 12.2 0 0.2 11.4 0 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:314308-315437 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~314308-315437 Ribonuclease_T2 PF00445.13 g98176.t1 - 0.097 12.2 1.4 0.13 11.8 1 1.3 1 0 0 1 1 1 0 Ribonuclease T2 family | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:89076-89771 Augustus predicted protein sequence Tobacco scaffold2154_contigs=6~89076-89771 NinF PF05810.7 g78433.t1 - 0.11 12.3 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 NinF protein | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:41195-41991 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~41195-41991 NCKAP5 PF15246.1 g41788.t1 - 0.05 12.9 0 0.052 12.9 0 1.1 1 0 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:4145-4952 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~4145-4952 zinc_ribbon_2 PF13240.1 g120965.t1 - 0.09 12.2 0.1 3.2 7.3 0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:112549-112932 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~112549-112932 HAP1_N PF04849.8 g115382.t1 - 0.047 12.6 3.5 0.068 12.1 2.4 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:201144-201823 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~201144-201823 Nup153 PF08604.5 g42216.t1 - 0.029 13 2 0.031 12.9 1.4 1 1 0 0 1 1 1 0 Nucleoporin Nup153-like | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:195970-196245 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~195970-196245 Nucleoporin_FG PF13634.1 g99608.t1 - 0.026 14.7 1.7 0.036 14.3 1.2 1.2 1 0 0 1 1 1 0 Nucleoporin FG repeat region | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:74625-75020 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~74625-75020 Rtf2 PF04641.7 g79859.t1 - 0.4 9.8 16.3 0.67 9.1 11.3 1.3 1 0 0 1 1 1 0 Rtf2 RING-finger | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:58171-59001 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~58171-59001 DUF2407 PF10302.4 g71662.t1 - 0.0023 18.1 0 0.0024 18 0 1.1 1 0 0 1 1 1 1 DUF2407 ubiquitin-like domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:234681-234884 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~234681-234884 UBN2_3 PF14244.1 g107829.t1 - 0.0029 17.1 0 0.0045 16.5 0 1.3 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:217344-217942 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~217344-217942 BMFP PF04380.8 g107058.t1 - 0.06 13.4 3.9 0.079 13.1 2.7 1.1 1 0 0 1 1 1 0 Membrane fusogenic activity | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:544671-545140 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~544671-545140 Cwf_Cwc_15 PF04889.7 g82561.t1 - 0.087 12.5 1 0.1 12.2 0.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1752_contigs=1, transcript_loc=scaffold1752_contigs=1:12916-13589 Augustus predicted protein sequence Tobacco scaffold1752_contigs=1~12916-13589 OAD_gamma PF04277.8 g36942.t1 - 0.074 13.4 0.9 0.12 12.7 0.6 1.3 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold905_contigs=2, transcript_loc=scaffold905_contigs=2:21677-22236 Augustus predicted protein sequence Tobacco scaffold905_contigs=2~21677-22236 FAR1 PF03101.10 g27088.t1 - 0.000029 24.4 0 0.000042 23.9 0 1.2 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:15260-15721 Augustus predicted protein sequence Tobacco scaffold721_contigs=12~15260-15721 DUF3375 PF11855.3 g59775.t1 - 0.028 13.1 0.1 0.034 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:177206-178261 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~177206-178261 Cellulose_synt PF03552.9 g37089.t1 - 0.45 8.7 5.4 0.67 8.1 3.8 1.2 1 0 0 1 1 1 0 Cellulose synthase | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:88440-89297 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~88440-89297 HALZ PF02183.13 g21320.t1 - 0.06 13 0.2 0.13 12 0.2 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:93181-93600 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~93181-93600 Selenoprotein_S PF06936.6 g50150.t1 - 1.4 8.3 3.5 3.5 7.1 2.6 1.4 2 0 0 2 2 2 0 Selenoprotein S (SelS) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:13226-13426 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~13226-13426 DUF755 PF05501.6 g31971.t1 - 0.66 10 13.3 0.78 9.8 9.2 1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:64628-64837 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~64628-64837 Toxin_20 PF08089.6 g119718.t1 - 0.13 12.2 1 0.27 11.1 0.7 1.5 1 0 0 1 1 1 0 Huwentoxin-II family | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:6480-6869 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~6480-6869 Thr_synth_N PF14821.1 g61116.t1 - 0.051 13.6 0 0.07 13.1 0 1.2 1 0 0 1 1 1 0 Threonine synthase N terminus | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:78052-78423 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~78052-78423 zf-CCHC PF00098.18 g66893.t1 - 0.00041 20.1 2.9 0.00041 20.1 2 2.2 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:58800-59519 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~58800-59519 DUF1985 PF09331.6 g96168.t1 - 0.00099 18.9 0 0.0014 18.4 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:13002-13742 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~13002-13742 Snurportin1 PF11538.3 g111229.t1 - 0.11 12.2 0.8 0.22 11.3 0.3 1.7 1 1 1 2 2 2 0 Snurportin1 | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:18218-18547 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~18218-18547 Fzo_mitofusin PF04799.8 g64005.t1 - 0.027 13.8 2.1 0.049 13 1.5 1.5 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:146510-147800 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~146510-147800 Transposase_28 PF04195.7 g60637.t1 - 0.04 13.2 0 0.04 13.2 0 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:145640-145852 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~145640-145852 CortBP2 PF09727.4 g4218.t1 - 0.032 13.7 0.1 0.038 13.5 0.1 1 1 0 0 1 1 1 0 Cortactin-binding protein-2 | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:35668-35883 Augustus predicted protein sequence Tobacco scaffold255_contigs=10~35668-35883 UPF0102 PF02021.12 g120794.t1 - 0.11 12.3 0 0.22 11.4 0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:149624-150365 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~149624-150365 HMG_box_2 PF09011.5 g9524.t1 - 0.12 12.7 0 0.17 12.2 0 1.2 1 0 0 1 1 1 0 HMG-box domain | Ref_seq=scaffold371_contigs=8, transcript_loc=scaffold371_contigs=8:3232-3609 Augustus predicted protein sequence Tobacco scaffold371_contigs=8~3232-3609 DBD_Tnp_Mut PF03108.10 g102462.t1 - 0.000000015 34 0 0.00000003 33.1 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:50148-50705 Augustus predicted protein sequence Tobacco scaffold2251_contigs=17~50148-50705 P12 PF12669.2 g76812.t1 - 0.071 13.3 0.8 0.071 13.3 0.6 1.4 2 0 0 2 2 2 0 Virus attachment protein p12 family | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:164893-165129 Augustus predicted protein sequence Tobacco scaffold1620_contigs=20~164893-165129 DivIC PF04977.10 g24328.t1 - 0.81 9.2 5.3 2.3 7.7 3.5 1.8 1 1 0 1 1 1 0 Septum formation initiator | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:80115-80342 Augustus predicted protein sequence Tobacco scaffold670_contigs=7~80115-80342 RAP-1 PF03085.10 g77459.t1 - 0.0041 16.4 0 0.79 9 0 2.1 2 0 0 2 2 2 2 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:123494-124063 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~123494-124063 Transposase_28 PF04195.7 g82677.t1 - 0.000036 23.1 0 0.000064 22.3 0 1.4 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1760_contigs=2, transcript_loc=scaffold1760_contigs=2:39064-40475 Augustus predicted protein sequence Tobacco scaffold1760_contigs=2~39064-40475 Dak2 PF02734.12 g26419.t1 - 0.0043 16.7 0.9 0.0055 16.4 0.6 1.1 1 0 0 1 1 1 1 DAK2 domain | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:31320-32193 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~31320-32193 DBD_Tnp_Mut PF03108.10 g127689.t1 - 3.4E-009 36.1 0.1 5.2E-009 35.5 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2833_contigs=1, transcript_loc=scaffold2833_contigs=1:40548-41417 Augustus predicted protein sequence Tobacco scaffold2833_contigs=1~40548-41417 ZZ PF00569.12 g123856.t1 - 0.055 13 0.6 0.087 12.3 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, ZZ type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:753341-753679 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~753341-753679 Cystatin PF00031.16 g93137.t1 - 0.0089 16.1 0.2 0.016 15.3 0.1 1.4 1 0 0 1 1 1 1 Cystatin domain | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:45888-47225 Augustus predicted protein sequence Tobacco scaffold2008_contigs=4~45888-47225 Filament_head PF04732.9 g21927.t1 - 7.5 7.3 8.9 4.5 8 0.5 2.7 3 0 0 3 3 3 0 Intermediate filament head (DNA binding) region | Ref_seq=scaffold605_contigs=7, transcript_loc=scaffold605_contigs=7:6373-7145 Augustus predicted protein sequence Tobacco scaffold605_contigs=7~6373-7145 GAS PF13851.1 g61486.t1 - 0.00093 18.4 9.1 0.0035 16.5 5.1 2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:249806-250399 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~249806-250399 Trypan_PARP PF05887.6 g62296.t1 - 0.0024 17.6 13.5 0.0027 17.5 9.4 1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:376496-376726 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~376496-376726 PMD PF10536.4 g17690.t1 - 0.0019 17.2 0.1 0.0027 16.7 0.1 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:83847-86007 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~83847-86007 IncA PF04156.9 g126636.t1 - 0.0011 18.5 5.7 0.0016 18 4 1.2 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:60083-60975 Augustus predicted protein sequence Tobacco scaffold2801_contigs=1~60083-60975 T4_baseplate PF12322.3 g72031.t1 - 0.1 11.8 0.1 0.13 11.5 0.1 1.1 1 0 0 1 1 1 0 T4 bacteriophage base plate protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:139924-140244 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~139924-140244 PRCC PF10253.4 g71577.t1 - 0.0045 17.7 0.1 0.0065 17.1 0.1 1.2 1 0 0 1 1 1 1 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:64497-64721 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~64497-64721 Serpulina_VSP PF05540.6 g21746.t1 - 0.11 11.2 0 0.15 10.7 0 1.1 1 0 0 1 1 1 0 Serpulina hyodysenteriae variable surface protein | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:75547-75984 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~75547-75984 Hepar_II_III PF07940.8 g30040.t1 - 0.11 12.3 0.1 0.13 12 0.1 1.1 1 0 0 1 1 1 0 Heparinase II/III-like protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:273032-273703 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~273032-273703 DUF4294 PF14127.1 g93380.t1 - 0.001 18.6 3.6 0.0012 18.4 2.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4294) | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:171124-171456 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~171124-171456 TMEM191C PF15194.1 g5583.t1 - 0.059 13.2 0.1 0.061 13.1 0 1.2 1 0 0 1 1 1 0 TMEM191C family | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:428673-429075 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~428673-429075 CDC37_N PF03234.9 g34687.t1 - 0.017 15.4 1.2 0.019 15.2 0.8 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:86641-87200 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~86641-87200 DUF4219 PF13961.1 g95996.t1 - 0.00032 20 2 0.0013 18 1.4 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:99585-99857 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~99585-99857 Med19 PF10278.4 g82368.t1 - 0.014 15 7.1 0.017 14.7 4.9 1.1 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:357116-357400 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~357116-357400 Peptidase_C39 PF03412.10 g126416.t1 - 0.0063 16.3 0 0.012 15.4 0 1.5 1 1 0 1 1 1 1 Peptidase C39 family | Ref_seq=scaffold2794_contigs=1, transcript_loc=scaffold2794_contigs=1:62364-63160 Augustus predicted protein sequence Tobacco scaffold2794_contigs=1~62364-63160 DUF4164 PF13747.1 g78061.t1 - 0.013 15.5 0.3 0.015 15.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:322142-322441 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~322142-322441 DELLA PF12041.3 g75962.t1 - 0.1 12.2 0.9 2.9 7.6 0 2.4 1 1 2 3 3 3 0 Transcriptional regulator DELLA protein N terminal | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:93915-94189 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~93915-94189 Trs65 PF12735.2 g45023.t1 - 0.077 12.3 0 0.16 11.2 0 1.6 2 0 0 2 2 2 0 TRAPP trafficking subunit Trs65 | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:243905-244472 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~243905-244472 DUF1985 PF09331.6 g89469.t1 - 0.018 14.8 0 0.027 14.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1947_contigs=6, transcript_loc=scaffold1947_contigs=6:108653-109913 Augustus predicted protein sequence Tobacco scaffold1947_contigs=6~108653-109913 RVT_3 PF13456.1 g102911.t1 - 0.000003 26.9 0 0.0000043 26.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:5953-6294 Augustus predicted protein sequence Tobacco scaffold2272_contigs=16~5953-6294 C2-set_2 PF08205.7 g72428.t1 - 0.056 13.3 0.1 0.083 12.8 0.1 1.3 1 0 0 1 1 1 0 CD80-like C2-set immunoglobulin domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1078427-1078759 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1078427-1078759 XRCC4 PF06632.7 g19178.t1 - 0.047 12.5 0 0.048 12.5 0 1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:511173-511652 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~511173-511652 Ribosomal_L15e PF00827.12 g35748.t1 - 0.012 15 0.4 0.026 14 0.3 1.5 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:284433-285811 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~284433-285811 DUF755 PF05501.6 g94553.t1 - 0.4 10.7 1.6 0.47 10.5 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:36817-37077 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~36817-37077 DUF588 PF04535.7 g98112.t1 - 0.081 12.4 1.5 0.097 12.2 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF588) | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:196586-197101 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~196586-197101 RecR PF02132.10 g67469.t1 - 0.15 11.5 1.1 0.25 10.8 0.2 1.8 2 1 0 2 2 2 0 RecR protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:330563-330844 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~330563-330844 DUF2310 PF10071.4 g32459.t1 - 0.0088 15 0 0.0095 14.9 0 1 1 0 0 1 1 1 1 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:180216-180542 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~180216-180542 PsbP PF01789.11 g15290.t1 - 0.028 13.8 0 0.047 13.1 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:78767-79366 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~78767-79366 PY_rept_46 PF09689.5 g21195.t1 - 0.55 10.5 6.1 1.1 9.6 1.2 2.8 2 0 0 2 2 2 0 Plasmodium yoelii repeat (PY_rept_46) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:251323-252292 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~251323-252292 DUF3180 PF11377.3 g51469.t1 - 0.028 14.2 0 0.036 13.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:104605-104922 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~104605-104922 End_N_terminal PF12218.3 g119857.t1 - 0.08 12.4 0 0.14 11.5 0 1.4 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:364268-364832 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~364268-364832 CENP-F_leu_zip PF10473.4 g103792.t1 - 0.034 14 0.2 0.038 13.8 0.1 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:55781-56459 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~55781-56459 Nsp1_C PF05064.8 g35724.t1 - 0.0064 16.1 0.5 0.0076 15.8 0.4 1.2 1 0 0 1 1 1 1 Nsp1-like C-terminal region | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:222362-223440 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~222362-223440 Orthopox_A43R PF06517.6 g55154.t1 - 0.049 13.2 0.2 0.051 13.1 0.2 1.2 1 0 0 1 1 1 0 Orthopoxvirus A43R protein | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:39124-39522 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~39124-39522 Fez1 PF06818.10 g26385.t1 - 0.13 12.2 0 0.17 11.8 0 1.2 1 0 0 1 1 1 0 Fez1 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:238161-238772 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~238161-238772 X PF00739.14 g66087.t1 - 0.1 12.5 0.8 0.11 12.3 0.6 1.2 1 0 0 1 1 1 0 Trans-activation protein X | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:302804-303088 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~302804-303088 RCC1 PF00415.13 g4496.t1 - 0.045 13.9 0 0.12 12.6 0 1.8 1 1 1 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:331828-332241 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~331828-332241 Pkinase PF00069.20 g33497.t1 - 0.0033 16.5 0.9 0.02 14 0 2 1 1 1 2 2 2 1 Protein kinase domain | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:359544-360651 Augustus predicted protein sequence Tobacco scaffold831_contigs=10~359544-360651 TATR PF03430.8 g80838.t1 - 0.32 9.6 3.1 0.34 9.4 2.1 1 1 0 0 1 1 1 0 Trans-activating transcriptional regulator | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:163342-163602 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~163342-163602 Dynactin_p22 PF07426.6 g33582.t1 - 0.0068 15.7 0.9 0.0086 15.3 0.6 1.1 1 0 0 1 1 1 1 Dynactin subunit p22 | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:116170-116502 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~116170-116502 Arena_glycoprot PF00798.13 g48921.t1 - 0.04 12.3 0.1 0.041 12.3 0.1 1.1 1 0 0 1 1 1 0 Arenavirus glycoprotein | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:614971-615651 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~614971-615651 DUF1140 PF06600.6 g21147.t1 - 0.17 12 3.5 0.19 11.8 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1140) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:65222-65464 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~65222-65464 CaM-KIIN PF15170.1 g23537.t1 - 0.082 12.9 0.2 8.6 6.4 0.1 2.2 1 1 1 2 2 2 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold650_contigs=1, transcript_loc=scaffold650_contigs=1:38524-38787 Augustus predicted protein sequence Tobacco scaffold650_contigs=1~38524-38787 HpcH_HpaI PF03328.9 g26928.t1 - 0.15 10.9 0 0.31 9.8 0 1.6 1 1 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:540181-540828 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~540181-540828 DUF2750 PF11042.3 g59774.t1 - 0.03 14.3 0.3 0.034 14.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2750) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:175021-175460 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~175021-175460 UBN2 PF14223.1 g65827.t1 - 0.000051 23 0 0.000053 22.9 0 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:182131-182334 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~182131-182334 KH_5 PF13184.1 g108722.t1 - 0.14 11.9 1.9 0.14 11.9 0.7 1.5 1 1 1 2 2 2 0 NusA-like KH domain | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:71549-71842 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~71549-71842 Chon_Sulph_att PF06566.6 g76357.t1 - 0.19 11.3 9.4 0.26 10.8 6.5 1.2 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:30681-31064 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~30681-31064 DBD_Tnp_Mut PF03108.10 g112145.t1 - 3.6E-017 61.6 3.2 2.1E-009 36.7 0.4 2.4 2 0 0 2 2 2 2 MuDR family transposase | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:84096-85388 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~84096-85388 RVT_3 PF13456.1 g75148.t1 - 0.000000013 34.5 0 0.000000014 34.3 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:61215-61502 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~61215-61502 Rab5-bind PF09311.6 g5077.t1 - 0.069 13 0.4 0.069 13 0.2 2.2 2 1 0 2 2 2 0 Rabaptin-like protein | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:268943-270513 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~268943-270513 Med12 PF09497.5 g105287.t1 - 0.13 12.2 0 0.19 11.7 0 1.2 1 0 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:223752-223967 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~223752-223967 Dicistro_VP4 PF11492.3 g38227.t1 - 0.073 13 0 0.14 12.1 0 1.4 1 0 0 1 1 1 0 Cricket paralysis virus, VP4 | Ref_seq=scaffold932_contigs=1, transcript_loc=scaffold932_contigs=1:9079-9987 Augustus predicted protein sequence Tobacco scaffold932_contigs=1~9079-9987 DUF4613 PF15390.1 g48894.t1 - 0.023 12.9 3.8 0.028 12.6 2.7 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:567604-568516 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~567604-568516 Gamma-thionin PF00304.15 g67146.t1 - 2.4E-011 43.4 12.1 4.1E-011 42.7 8.4 1.4 1 0 0 1 1 1 1 Gamma-thionin family | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:605406-605906 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~605406-605906 ATHILA PF03078.10 g99301.t1 - 0.0000016 26.9 0 0.000002 26.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:84661-85853 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~84661-85853 ATHILA PF03078.10 g22271.t1 - 0.000019 23.4 0 0.000021 23.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:3773-4048 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~3773-4048 DUF4210 PF13915.1 g94586.t1 - 0.12 12.7 0 6 7.2 0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4210) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:108097-112160 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~108097-112160 HALZ PF02183.13 g55743.t1 - 0.19 11.4 2 0.49 10.1 1.4 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:8876-10038 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~8876-10038 TruB_C PF09142.6 g130184.t1 - 0.35 10.5 1.8 1.1 8.9 0.1 2.3 2 1 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal | Ref_seq=scaffold3597_contigs=1, transcript_loc=scaffold3597_contigs=1:1447-1671 Augustus predicted protein sequence Tobacco scaffold3597_contigs=1~1447-1671 Cytadhesin_P30 PF07271.6 g102299.t1 - 0.023 13.9 2.1 0.03 13.6 1.5 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:216443-216913 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~216443-216913 DUF1985 PF09331.6 g24428.t1 - 0.00000045 29.7 0 0.00000053 29.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:184684-185860 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~184684-185860 Casc1 PF12366.3 g29526.t1 - 0.004 16.7 2.4 0.005 16.3 1.7 1.1 1 0 0 1 1 1 1 Cancer susceptibility candidate 1 | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:121956-122548 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~121956-122548 RVT_3 PF13456.1 g23961.t1 - 0.00000018 30.8 0 0.00000022 30.5 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold655_contigs=15, transcript_loc=scaffold655_contigs=15:345043-345267 Augustus predicted protein sequence Tobacco scaffold655_contigs=15~345043-345267 DUF2626 PF11117.3 g110047.t1 - 0.017 15.5 0.1 0.16 12.4 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2626) | Ref_seq=scaffold2523_contigs=5, transcript_loc=scaffold2523_contigs=5:6289-6726 Augustus predicted protein sequence Tobacco scaffold2523_contigs=5~6289-6726 LPAM_1 PF08139.7 g7503.t1 - 0.78 10 3.2 2.2 8.6 2.2 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:239576-239791 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~239576-239791 Retrotrans_gag PF03732.12 g72149.t1 - 0.00016 21.6 0 0.00024 21.1 0 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:374995-375450 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~374995-375450 Vps5 PF09325.5 g87401.t1 - 0.0099 15.1 0.3 0.012 14.8 0.2 1.2 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:2730-2978 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~2730-2978 HOOK PF05622.7 g60600.t1 - 0.13 10 0.2 0.16 9.7 0.1 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:20114-20374 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~20114-20374 zf-A20 PF01754.11 g48090.t1 - 0.46 10.1 2.6 16 5.1 0.7 2.4 2 0 0 2 2 2 0 A20-like zinc finger | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:190084-190420 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~190084-190420 Fis1_TPR_N PF14852.1 g114558.t1 - 0.043 13.1 0.6 4.9 6.5 0.1 2.6 2 0 0 2 2 2 0 Fis1 N-terminal tetratricopeptide repeat | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:27061-28786 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~27061-28786 Myc_N PF01056.13 g112449.t1 - 0.017 14.2 0.3 0.018 14.2 0.2 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:58369-58795 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~58369-58795 Invas_SpaK PF03519.9 g23268.t1 - 0.014 15.1 0 0.02 14.6 0 1.3 1 0 0 1 1 1 0 Invasion protein B family | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:116870-117070 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~116870-117070 HR1 PF02185.11 g36224.t1 - 0.036 13.7 3 0.036 13.8 1.5 1.6 2 1 0 2 2 2 0 Hr1 repeat | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:546355-546822 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~546355-546822 NESP55 PF06390.7 g88600.t1 - 0.96 8.7 6.1 1.5 8.1 4.1 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1931_contigs=8, transcript_loc=scaffold1931_contigs=8:12590-13051 Augustus predicted protein sequence Tobacco scaffold1931_contigs=8~12590-13051 FixG_C PF11614.3 g47788.t1 - 0.12 12.5 0.2 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:120583-120831 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~120583-120831 BRF1 PF07741.8 g68491.t1 - 0.0034 17.5 1.4 0.0034 17.5 1 1.1 1 0 0 1 1 1 1 Brf1-like TBP-binding domain | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:237483-237746 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~237483-237746 NAM-associated PF14303.1 g107810.t1 - 0.00076 19.8 0.4 0.001 19.4 0.3 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:157258-161313 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~157258-161313 FH2 PF02181.18 g78166.t1 - 0.044 12.6 0 0.047 12.5 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1640_contigs=5, transcript_loc=scaffold1640_contigs=5:150242-150658 Augustus predicted protein sequence Tobacco scaffold1640_contigs=5~150242-150658 DUF3651 PF12371.3 g45146.t1 - 0.0069 16.3 0.2 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3651) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:565478-566391 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~565478-566391 Nuc_recep-AF1 PF11825.3 g76193.t1 - 0.027 14.3 1.8 0.77 9.6 0.1 2.9 1 1 1 2 2 2 0 Nuclear/hormone receptor activator site AF-1 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:234606-235199 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~234606-235199 Trypan_PARP PF05887.6 g41914.t1 - 2.7 7.8 12.8 3.9 7.2 8.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:224069-224428 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~224069-224428 Ribosomal_L12 PF00542.14 g78777.t1 - 0.28 11.1 1.3 2.6 8.1 0 2.3 1 1 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:132839-133090 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~132839-133090 Adenylsucc_synt PF00709.16 g125729.t1 - 0.055 12.1 0 0.067 11.8 0 1.1 1 0 0 1 1 1 0 Adenylosuccinate synthetase | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:14595-15044 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~14595-15044 DUF3682 PF12446.3 g92211.t1 - 0.13 12.5 2.6 0.2 11.9 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3682) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:2585-4830 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~2585-4830 zf-BED PF02892.10 g97544.t1 - 0.0068 16.1 1.8 0.018 14.8 1 1.8 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:131210-131941 Augustus predicted protein sequence Tobacco scaffold2138_contigs=7~131210-131941 LCE PF14672.1 g129963.t1 - 3.9 8 14.1 0.45 11 3.5 2.8 2 1 0 2 2 2 0 Late cornified envelope | Ref_seq=scaffold3265_contigs=1, transcript_loc=scaffold3265_contigs=1:1749-2581 Augustus predicted protein sequence Tobacco scaffold3265_contigs=1~1749-2581 PP1c_bdg PF10488.4 g49521.t1 - 0.045 12.9 0 0.05 12.7 0 1.1 1 0 0 1 1 1 0 Phosphatase-1 catalytic subunit binding region | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:861537-861797 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~861537-861797 LRRNT PF01462.13 g3149.t1 - 0.06 12.8 0.3 0.13 11.7 0.2 1.6 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:56929-57369 Augustus predicted protein sequence Tobacco scaffold227_contigs=2~56929-57369 Matrilin_ccoil PF10393.4 g58006.t1 - 0.048 13 0.3 0.096 12 0.2 1.6 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:105073-105396 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~105073-105396 LRR_6 PF13516.1 g83216.t1 - 5 7.5 5.4 88 3.6 0 4.2 5 0 0 5 5 5 0 Leucine Rich repeat | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:366950-367827 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~366950-367827 Rep_trans PF02486.14 g106726.t1 - 0.037 13.5 2 0.049 13.1 1.4 1.2 1 0 0 1 1 1 0 Replication initiation factor | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:445035-445520 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~445035-445520 CAF-1_p150 PF11600.3 g89204.t1 - 0.000049 22.8 23.9 0.000052 22.7 16.6 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:71277-71825 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~71277-71825 DNA_pol3_delta PF06144.8 g72509.t1 - 0.026 14 2.7 0.028 13.9 1.9 1 1 0 0 1 1 1 0 DNA polymerase III, delta subunit | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:18822-19160 Augustus predicted protein sequence Tobacco scaffold1509_contigs=13~18822-19160 SPG48 PF14764.1 g53197.t1 - 0.098 11.1 0 0.1 11 0 1 1 0 0 1 1 1 0 AP-5 complex subunit, vesicle trafficking | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:152044-152736 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~152044-152736 Herpes_IE68 PF02479.11 g39483.t1 - 0.094 11.9 0.1 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus immediate early protein | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:26316-26696 Augustus predicted protein sequence Tobacco scaffold957_contigs=5~26316-26696 KRBA1 PF15287.1 g124805.t1 - 7.4 6 8.4 1.1 8.6 0.5 2.3 1 1 1 2 2 2 0 KRBA1 family repeat | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:191605-191883 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~191605-191883 DUF4211 PF13926.1 g37644.t1 - 0.0057 16 0.1 0.0069 15.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4211) | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:122315-122608 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~122315-122608 Levi_coat PF01819.12 g102934.t1 - 0.032 13.8 0.5 0.059 12.9 0.1 1.7 2 0 0 2 2 2 0 Levivirus coat protein | Ref_seq=scaffold2273_contigs=2, transcript_loc=scaffold2273_contigs=2:13705-14504 Augustus predicted protein sequence Tobacco scaffold2273_contigs=2~13705-14504 GST_C_4 PF14834.1 g100075.t1 - 0.011 15.6 0.1 6.8 6.6 0 2.6 2 2 0 2 2 2 0 Glutathione S-transferase, C-terminal domain | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:521635-522282 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~521635-522282 ABC_tran_2 PF12848.2 g23261.t1 - 0.0026 17.5 0.6 0.0036 17 0.4 1.2 1 0 0 1 1 1 1 ABC transporter | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:94730-96582 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~94730-96582 Sas10_Utp3 PF04000.10 g37486.t1 - 0.028 14.5 0 0.034 14.3 0 1.1 1 0 0 1 1 1 0 Sas10/Utp3/C1D family | Ref_seq=scaffold927_contigs=11, transcript_loc=scaffold927_contigs=11:56618-56878 Augustus predicted protein sequence Tobacco scaffold927_contigs=11~56618-56878 DUF760 PF05542.6 g115468.t1 - 0.13 12.4 0 0.23 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF760) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:406264-406818 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~406264-406818 DUF1160 PF06648.6 g116490.t1 - 0.046 13.4 0.4 0.065 13 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:201385-201705 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~201385-201705 Adeno_E3A PF05248.7 g83821.t1 - 0.26 11.3 3.2 0.38 10.8 2.2 1.2 1 0 0 1 1 1 0 Adenovirus E3A | Ref_seq=scaffold1805_contigs=6, transcript_loc=scaffold1805_contigs=6:24057-24480 Augustus predicted protein sequence Tobacco scaffold1805_contigs=6~24057-24480 DUF3912 PF13051.1 g42559.t1 - 0.041 13.6 0 0.056 13.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:61075-61484 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~61075-61484 RepB PF07506.6 g71298.t1 - 0.017 15 0.1 0.018 14.9 0.1 1.1 1 0 0 1 1 1 0 RepB plasmid partitioning protein | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:472400-473489 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~472400-473489 Hen1_L PF12623.2 g56107.t1 - 0.085 11.6 0 0.13 10.9 0 1.3 1 0 0 1 1 1 0 RNA repair, ligase-Pnkp-associating, region of Hen1 | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:75888-76280 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~75888-76280 ATHILA PF03078.10 g6553.t1 - 0.00011 20.9 0 0.00012 20.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold300_contigs=5, transcript_loc=scaffold300_contigs=5:29443-29658 Augustus predicted protein sequence Tobacco scaffold300_contigs=5~29443-29658 A2L_zn_ribbon PF08792.5 g82208.t1 - 0.00058 19.2 0.2 0.071 12.5 0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:74189-74596 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~74189-74596 Peptidase_S49_N PF08496.5 g71478.t1 - 0.41 10.4 3.9 0.78 9.5 2.7 1.6 1 1 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:98664-99424 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~98664-99424 Phage_G PF02306.10 g81.t1 - 0.00054 19.6 0.5 0.31 10.6 0 2.8 1 1 2 3 3 3 3 Major spike protein (G protein) | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:50405-50758 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~50405-50758 SopA_C PF13979.1 g120840.t1 - 0.069 12.7 0.2 0.081 12.5 0.2 1.1 1 0 0 1 1 1 0 SopA-like catalytic domain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:314286-314612 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~314286-314612 Glyco_hydro_77 PF02446.12 g45205.t1 - 0.025 13.1 0.1 0.032 12.8 0 1 1 0 0 1 1 1 0 4-alpha-glucanotransferase | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:73147-73930 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~73147-73930 Matrilin_ccoil PF10393.4 g129844.t1 - 0.0019 17.5 0 0.53 9.6 0 2.4 2 0 0 2 2 2 2 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3109_contigs=1, transcript_loc=scaffold3109_contigs=1:1983-3545 Augustus predicted protein sequence Tobacco scaffold3109_contigs=1~1983-3545 Humanin PF15040.1 g43686.t1 - 0.0042 16.2 0.2 0.011 14.9 0.2 1.7 1 0 0 1 1 1 1 Humanin family | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:416126-416419 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~416126-416419 Retrotrans_gag PF03732.12 g81448.t1 - 0.015 15.3 0.1 0.032 14.2 0 1.5 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:19831-20148 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~19831-20148 NAM-associated PF14303.1 g126998.t1 - 0.017 15.4 4.4 0.02 15.1 3 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2811_contigs=1, transcript_loc=scaffold2811_contigs=1:10914-11285 Augustus predicted protein sequence Tobacco scaffold2811_contigs=1~10914-11285 Borrelia_P13 PF05628.7 g97729.t1 - 0.0016 18.2 0 1 9.1 0 2.1 1 1 1 2 2 2 2 Borrelia membrane protein P13 | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:36471-38530 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~36471-38530 RVT_3 PF13456.1 g52279.t1 - 0.0053 16.4 0 0.0078 15.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1178_contigs=24, transcript_loc=scaffold1178_contigs=24:392642-393122 Augustus predicted protein sequence Tobacco scaffold1178_contigs=24~392642-393122 Ribosomal_L14e PF01929.12 g130076.t1 - 0.015 15.6 0.2 0.025 14.9 0.1 1.4 1 1 0 1 1 1 0 Ribosomal protein L14 | Ref_seq=scaffold3412_contigs=1, transcript_loc=scaffold3412_contigs=1:1888-2217 Augustus predicted protein sequence Tobacco scaffold3412_contigs=1~1888-2217 ATHILA PF03078.10 g74554.t1 - 7.1E-009 34.7 0.2 8.5E-009 34.5 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:132781-133290 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~132781-133290 Gln-synt_C PF00120.19 g78763.t1 - 0.051 12.7 0.2 0.052 12.6 0.2 1.1 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:104212-104721 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~104212-104721 Tektin PF03148.9 g37179.t1 - 0.083 11.4 0.2 0.11 10.9 0.2 1.1 1 0 0 1 1 1 0 Tektin family | Ref_seq=scaffold911_contigs=13, transcript_loc=scaffold911_contigs=13:18230-21753 Augustus predicted protein sequence Tobacco scaffold911_contigs=13~18230-21753 NAGLU_C PF12972.2 g116906.t1 - 0.022 14.1 0.8 0.025 13.9 0.5 1 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:65635-65895 Augustus predicted protein sequence Tobacco scaffold2678_contigs=5~65635-65895 PBP_sp32 PF07222.7 g30006.t1 - 0.64 9.1 4.8 1 8.4 3.3 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:191675-192460 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~191675-192460 DUF4243 PF14027.1 g18497.t1 - 0.029 13.8 0 0.029 13.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4243) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:121990-122845 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~121990-122845 FA_desaturase PF00487.19 g66950.t1 - 0.098 12 0.4 0.11 11.9 0.3 1 1 0 0 1 1 1 0 Fatty acid desaturase | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:206120-206392 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~206120-206392 PROL5-SMR PF15621.1 g29829.t1 - 0.51 10.7 6.3 0.66 10.4 4.4 1.2 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:202792-203076 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~202792-203076 E1_DerP2_DerF2 PF02221.10 g86365.t1 - 0.12 12.5 0 0.14 12.3 0 1.1 1 0 0 1 1 1 0 ML domain | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:143719-144157 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~143719-144157 Seryl_tRNA_N PF02403.17 g13013.t1 - 0.1 12.6 2.6 0.14 12.2 1.8 1.4 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:151981-152426 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~151981-152426 NOA36 PF06524.7 g80483.t1 - 0.045 13 14.8 0.053 12.7 10.3 1.1 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:99846-100274 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~99846-100274 DNA_ligase_ZBD PF03119.11 g9616.t1 - 0.044 13.4 1.2 6.4 6.5 0 3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:143117-143428 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~143117-143428 RNase_H2-Ydr279 PF09468.5 g56031.t1 - 0.031 13.4 1.2 0.03 13.5 0.8 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1239_contigs=6, transcript_loc=scaffold1239_contigs=6:79423-79773 Augustus predicted protein sequence Tobacco scaffold1239_contigs=6~79423-79773 DUF2000 PF09391.5 g53947.t1 - 0.032 13.8 0 0.043 13.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2000) | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:479596-479905 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~479596-479905 Ycf9 PF01737.12 g40791.t1 - 0.17 11.3 1 0.23 10.9 0.7 1.2 1 0 0 1 1 1 0 YCF9 | Ref_seq=scaffold981_contigs=14, transcript_loc=scaffold981_contigs=14:187306-187512 Augustus predicted protein sequence Tobacco scaffold981_contigs=14~187306-187512 CCDC144C PF14915.1 g111973.t1 - 0.0000027 26.5 19.5 0.0034 16.3 1.4 3.1 2 1 1 3 3 3 2 CCDC144C protein coiled-coil region | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:45618-46647 Augustus predicted protein sequence Tobacco scaffold2599_contigs=27~45618-46647 Atg31 PF09795.4 g18994.t1 - 0.087 12.5 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 Autophagy-related protein 31 | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:46671-47914 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~46671-47914 TRAP_alpha PF03896.11 g104632.t1 - 0.74 8.7 4.5 1.6 7.6 1.5 2.1 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:232809-235856 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~232809-235856 DUF4530 PF15039.1 g62052.t1 - 0.15 11.9 6 0.25 11.2 4.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) | Ref_seq=scaffold1345_contigs=14, transcript_loc=scaffold1345_contigs=14:232085-232668 Augustus predicted protein sequence Tobacco scaffold1345_contigs=14~232085-232668 DUF3122 PF11320.3 g62325.t1 - 0.073 13 0 0.097 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:430906-431277 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~430906-431277 DUF605 PF04652.11 g486.t1 - 8.5 5.6 17.1 9.3 5.5 11.8 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:25123-25647 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~25123-25647 DUF755 PF05501.6 g9430.t1 - 0.023 14.7 5.9 0.73 9.9 3.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF755) | Ref_seq=scaffold365_contigs=1, transcript_loc=scaffold365_contigs=1:11785-14929 Augustus predicted protein sequence Tobacco scaffold365_contigs=1~11785-14929 DUF4219 PF13961.1 g124417.t1 - 0.000064 22.2 0.1 0.000099 21.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2170045-2170260 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2170045-2170260 DUF2407_C PF13373.1 g41663.t1 - 0.19 11.6 0.9 0.26 11.2 0.6 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:156282-156815 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~156282-156815 PLRV_ORF5 PF01690.12 g72263.t1 - 0.77 8.8 4 1.2 8.2 0 2 1 1 1 2 2 2 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:639980-640483 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~639980-640483 Pax7 PF12360.3 g67084.t1 - 0.18 12 1 0.22 11.8 0.1 1.6 2 0 0 2 2 2 0 Paired box protein 7 | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:497890-498354 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~497890-498354 zf-CCHC_4 PF14392.1 g82096.t1 - 0.07 12.8 3.1 0.11 12.1 2.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:656933-657154 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~656933-657154 DUF4201 PF13870.1 g77073.t1 - 0.00069 19 3.2 0.0017 17.7 2.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:169125-169679 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~169125-169679 DUF2629 PF10945.3 g72476.t1 - 0.096 12 0.1 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2629) | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:66968-68314 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~66968-68314 WEMBL PF05701.6 g127136.t1 - 0.000025 22.9 1.2 0.000029 22.7 0.8 1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:45852-46229 Augustus predicted protein sequence Tobacco scaffold2814_contigs=1~45852-46229 UvrD_C_2 PF13538.1 g9382.t1 - 0.033 14.3 0 0.062 13.4 0 1.5 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain | Ref_seq=scaffold361_contigs=3, transcript_loc=scaffold361_contigs=3:2092-2598 Augustus predicted protein sequence Tobacco scaffold361_contigs=3~2092-2598 Dimer_Tnp_hAT PF05699.9 g70787.t1 - 0.00000038 29.6 0 0.0000014 27.8 0 2.1 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:169858-172937 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~169858-172937 DUF3702 PF12486.3 g20483.t1 - 0.03 13.9 0.1 0.039 13.6 0.1 1.1 1 0 0 1 1 1 0 ImpA domain protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:340834-341109 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~340834-341109 Lip_A_acyltrans PF03279.8 g11002.t1 - 0.034 13 0 0.041 12.7 0 1 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase | Ref_seq=scaffold399_contigs=4, transcript_loc=scaffold399_contigs=4:126221-127353 Augustus predicted protein sequence Tobacco scaffold399_contigs=4~126221-127353 zf-CCHC PF00098.18 g16529.t1 - 0.0037 17.1 0.1 0.0081 16 0.1 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:21791-22750 Augustus predicted protein sequence Tobacco scaffold519_contigs=1~21791-22750 DUF3862 PF12978.2 g65935.t1 - 0.053 13.1 0.1 4 7 0 2 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3862) | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:118232-119259 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~118232-119259 PT PF04886.7 g28436.t1 - 0.11 11.8 1.7 0.22 10.8 1.2 1.5 1 0 0 1 1 1 0 PT repeat | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:94226-95231 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~94226-95231 ATHILA PF03078.10 g101879.t1 - 0.00003 22.7 0.1 0.000032 22.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:99028-99444 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~99028-99444 DUF386 PF04074.7 g84174.t1 - 0.051 13 0 0.063 12.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF386) | Ref_seq=scaffold1813_contigs=6, transcript_loc=scaffold1813_contigs=6:199025-200103 Augustus predicted protein sequence Tobacco scaffold1813_contigs=6~199025-200103 zf-CCHC PF00098.18 g116353.t1 - 0.63 10 6.7 0.2 11.6 2.6 1.8 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:161143-161543 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~161143-161543 TOBE_2 PF08402.5 g120327.t1 - 0.055 13.4 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 TOBE domain | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:221890-224578 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~221890-224578 PRCC PF10253.4 g19573.t1 - 0.033 14.8 2.1 0.44 11.2 0 2.2 2 0 0 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:49448-51056 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~49448-51056 DUF2407_C PF13373.1 g114742.t1 - 0.015 15.1 1.2 2.3 8.1 0 2.2 2 0 0 2 2 2 0 DUF2407 C-terminal domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:12344-12938 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~12344-12938 Toxin_51 PF15531.1 g104911.t1 - 0.000066 22.7 1.3 0.091 12.5 0.2 2.1 2 0 0 2 2 2 2 Putative toxin 51 | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:81182-81656 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~81182-81656 Nop14 PF04147.7 g59910.t1 - 0.0000068 24.3 14.9 0.0000099 23.7 10.3 1.2 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:141431-141976 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~141431-141976 Ribosomal_S18 PF01084.15 g56072.t1 - 0.063 13.1 0 0.099 12.5 0 1.3 1 0 0 1 1 1 0 Ribosomal protein S18 | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:19146-19590 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~19146-19590 FH2 PF02181.18 g115309.t1 - 0.011 14.6 0.1 0.013 14.4 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:59027-59260 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~59027-59260 FH2 PF02181.18 g110637.t1 - 0.017 14 0 0.02 13.7 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:145684-146311 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~145684-146311 SPW PF03779.9 g17196.t1 - 0.29 10.5 3.7 0.55 9.6 2.6 1.6 1 0 0 1 1 1 0 SPW repeat | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:128293-128673 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~128293-128673 DUF2034 PF10356.4 g101322.t1 - 0.065 12.3 0.1 0.09 11.9 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2034) | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:31670-33096 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~31670-33096 RVT_3 PF13456.1 g118473.t1 - 0.00079 19.1 0.1 0.001 18.7 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:253936-254217 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~253936-254217 UXS1_N PF11803.3 g47677.t1 - 0.035 13.8 0 0.053 13.2 0 1.2 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:501362-501790 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~501362-501790 NESP55 PF06390.7 g117994.t1 - 2.9 7.2 6.2 3.8 6.8 3.9 1.5 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:8415-8729 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~8415-8729 VQ PF05678.9 g71466.t1 - 0.19 10.8 2.8 6.3 5.9 0.1 2.8 2 1 0 2 2 2 0 VQ motif | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:84315-84539 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~84315-84539 PUD PF03714.9 g64416.t1 - 0.095 12.8 0 0.11 12.6 0 1.1 1 0 0 1 1 1 0 Bacterial pullanase-associated domain | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:19258-19659 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~19258-19659 Herpes_U55 PF06501.6 g67496.t1 - 0.015 13.8 0 0.019 13.5 0 1.1 1 0 0 1 1 1 0 Human herpesvirus U55 protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:374953-375477 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~374953-375477 PBP1_TM PF14812.1 g74574.t1 - 0.075 13.3 1 0.13 12.6 0.7 1.4 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:199567-200097 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~199567-200097 DUF4248 PF14053.1 g25948.t1 - 0.079 12.5 0 0.12 11.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:151275-151508 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~151275-151508 Retrotrans_gag PF03732.12 g38139.t1 - 0.052 13.6 0 0.081 13 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:276599-276970 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~276599-276970 DUF556 PF04476.8 g83209.t1 - 0.69 9 3.2 6.6 5.8 0.1 2 1 1 1 2 2 2 0 Protein of unknown function (DUF556) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:357672-358108 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~357672-358108 DUF4201 PF13870.1 g21330.t1 - 0.012 15 1.9 0.038 13.4 1.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:139687-140769 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~139687-140769 TRAP_alpha PF03896.11 g10566.t1 - 0.028 13.4 1.3 0.031 13.2 0.9 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:301267-301957 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~301267-301957 GlutR_dimer PF00745.15 g42208.t1 - 0.043 13.7 1.9 0.046 13.6 0.2 1.8 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:181441-182005 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~181441-182005 DUF3914 PF13053.1 g53158.t1 - 0.0082 16.2 0.1 0.011 15.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3914) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:75978-76301 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~75978-76301 Fzo_mitofusin PF04799.8 g41865.t1 - 0.26 10.6 6.1 0.57 9.5 0.7 2.3 1 1 0 2 2 2 0 fzo-like conserved region | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:124822-125921 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~124822-125921 Vir_act_alpha_C PF10400.4 g26115.t1 - 0.094 13 0.2 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:384502-384816 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~384502-384816 EFhand_Ca_insen PF08726.5 g59426.t1 - 0.094 12.7 0 5.8 6.9 0 2.1 2 0 0 2 2 2 0 Ca2+ insensitive EF hand | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:99948-100684 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~99948-100684 Dimer_Tnp_hAT PF05699.9 g99777.t1 - 0.00000014 31 0 0.00000015 30.9 0 1.1 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2178_contigs=4, transcript_loc=scaffold2178_contigs=4:345-820 Augustus predicted protein sequence Tobacco scaffold2178_contigs=4~345-820 VCX_VCY PF15231.1 g55516.t1 - 0.025 14.9 1.8 0.036 14.4 1.2 1.2 1 0 0 1 1 1 0 Variable charge X/Y family | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:301917-302423 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~301917-302423 IlvGEDA_leader PF08046.6 g90619.t1 - 0.035 13.2 0.5 0.069 12.3 0.4 1.5 1 0 0 1 1 1 0 IlvGEDA operon leader peptide | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:511574-512238 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~511574-512238 YL1 PF05764.8 g114027.t1 - 1.9 8 12.1 0.52 9.8 6.3 1.6 1 1 1 2 2 2 0 YL1 nuclear protein | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:116968-117640 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~116968-117640 DSPc PF00782.15 g26445.t1 - 0.16 11.5 0.3 0.24 10.9 0.2 1.3 1 0 0 1 1 1 0 Dual specificity phosphatase, catalytic domain | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:78556-79148 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~78556-79148 DUF342 PF03961.8 g13492.t1 - 0.029 12.8 2.3 0.031 12.6 1.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:169188-169472 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~169188-169472 Not3 PF04065.10 g58946.t1 - 0.0087 15.3 4.1 0.012 14.8 2.8 1.3 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:271204-273396 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~271204-273396 SPT6_acidic PF14632.1 g50206.t1 - 0.61 10.2 30.5 1.2 9.3 21.1 1.4 1 0 0 1 1 1 0 Acidic N-terminal SPT6 | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:134622-137283 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~134622-137283 RNase_P_p30 PF01876.11 g14809.t1 - 0.05 12.8 0 0.051 12.8 0 1 1 0 0 1 1 1 0 RNase P subunit p30 | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:249805-250077 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~249805-250077 Late_protein_L2 PF00513.13 g66433.t1 - 0.012 14.4 0.6 0.016 14.1 0.4 1 1 0 0 1 1 1 0 Late Protein L2 | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:87417-88333 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~87417-88333 Radial_spoke_3 PF06098.6 g70640.t1 - 0.062 12.2 0.6 0.073 12 0.4 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:711389-711727 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~711389-711727 CASP_C PF08172.7 g81077.t1 - 0.017 14.1 2.9 0.89 8.5 0.5 2.1 1 1 1 2 2 2 0 CASP C terminal | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:188180-188765 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~188180-188765 Flavi_NS4B PF01349.12 g5716.t1 - 0.14 11 0.7 0.16 10.8 0.5 1.1 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4B | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:300763-301254 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~300763-301254 Retrotrans_gag PF03732.12 g122290.t1 - 0.00024 21 0.1 0.00031 20.7 0.1 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:73564-73934 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~73564-73934 RIX1 PF08167.7 g38116.t1 - 0.077 12.6 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 rRNA processing/ribosome biogenesis | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:234793-235083 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~234793-235083 ARGLU PF15346.1 g68401.t1 - 0.035 13.8 24.4 0.04 13.7 16.9 1 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:46886-47107 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~46886-47107 Exo_endo_phos PF03372.18 g44238.t1 - 0.05 13.5 0 0.054 13.4 0 1.2 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:77029-78498 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~77029-78498 DUF2508 PF10704.4 g13549.t1 - 0.064 13.4 0.3 0.08 13.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:44385-44630 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~44385-44630 DUF1985 PF09331.6 g5444.t1 - 1.8E-009 37.5 0 6.4E-009 35.7 0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:79400-80426 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~79400-80426 DBD_Tnp_Mut PF03108.10 g129416.t1 - 0.00089 18.7 1.2 0.0016 17.9 0.8 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2952_contigs=1, transcript_loc=scaffold2952_contigs=1:6689-7015 Augustus predicted protein sequence Tobacco scaffold2952_contigs=1~6689-7015 TT_ORF2 PF02957.10 g25568.t1 - 0.074 13.7 0.5 0.076 13.7 0.3 1.3 1 0 0 1 1 1 0 TT viral ORF2 | Ref_seq=scaffold700_contigs=3, transcript_loc=scaffold700_contigs=3:8606-8830 Augustus predicted protein sequence Tobacco scaffold700_contigs=3~8606-8830 BLVR PF06375.6 g59793.t1 - 0.0011 18.8 3.3 0.0012 18.7 2.3 1.1 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:196302-196619 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~196302-196619 TRAM1 PF08390.6 g65002.t1 - 0.082 12.4 0 0.12 11.8 0 1.3 1 0 0 1 1 1 0 TRAM1-like protein | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:188494-189559 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~188494-189559 Toxin_57 PF15535.1 g61708.t1 - 0.13 12.3 0 0.84 9.7 0 1.9 2 0 0 2 2 2 0 Putative toxin 57 | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:91639-91908 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~91639-91908 Transposase_28 PF04195.7 g94014.t1 - 0.13 11.5 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:417110-417514 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~417110-417514 Transglut_core2 PF13369.1 g21727.t1 - 0.044 13.2 0.1 0.051 13 0 1.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:166847-167104 Augustus predicted protein sequence Tobacco scaffold598_contigs=2~166847-167104 UBN2_3 PF14244.1 g128267.t1 - 0.00042 19.8 0 0.00079 19 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2858_contigs=1, transcript_loc=scaffold2858_contigs=1:47602-47874 Augustus predicted protein sequence Tobacco scaffold2858_contigs=1~47602-47874 DUF1725 PF08333.6 g14067.t1 - 0.0024 17.1 0.3 0.0054 15.9 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1725) | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:153855-155378 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~153855-155378 NIL PF09383.5 g80100.t1 - 0.031 13.8 0 0.045 13.3 0 1.3 1 0 0 1 1 1 0 NIL domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:121395-122762 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~121395-122762 DZR PF12773.2 g92747.t1 - 0.037 13.8 1.7 0.066 13 1.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:95889-97022 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~95889-97022 DUF3409 PF11889.3 g21865.t1 - 0.000058 22.7 0 5.8 6.6 0 3.1 3 0 0 3 3 3 3 Domain of unknown function (DUF3409) | Ref_seq=scaffold604_contigs=5, transcript_loc=scaffold604_contigs=5:75641-76171 Augustus predicted protein sequence Tobacco scaffold604_contigs=5~75641-76171 SPRY PF00622.23 g90677.t1 - 0.047 13.7 0 0.056 13.5 0 1.2 1 0 0 1 1 1 0 SPRY domain | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:803103-803653 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~803103-803653 SpoU_sub_bind PF08032.7 g102957.t1 - 0.061 13.5 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding | Ref_seq=scaffold2275_contigs=2, transcript_loc=scaffold2275_contigs=2:27836-29441 Augustus predicted protein sequence Tobacco scaffold2275_contigs=2~27836-29441 Remorin_N PF03766.8 g97734.t1 - 0.049 13.4 2.4 0.17 11.6 0.7 2.1 2 0 0 2 2 2 0 Remorin, N-terminal region | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:43925-44524 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~43925-44524 B2-adapt-app_C PF09066.5 g45477.t1 - 0.02 14.7 0.4 4.3 7.2 0 2.1 1 1 1 2 2 2 0 Beta2-adaptin appendage, C-terminal sub-domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:511622-511849 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~511622-511849 Fzo_mitofusin PF04799.8 g39171.t1 - 0.098 12 2.4 0.15 11.4 1.6 1.4 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:40526-41041 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~40526-41041 DB PF01682.14 g105624.t1 - 0.0041 17.1 0.1 0.0052 16.7 0.1 1.1 1 0 0 1 1 1 1 DB module | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:72397-72789 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~72397-72789 DUF4629 PF15442.1 g105314.t1 - 0.095 12.8 0.4 0.11 12.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4629) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:278202-278444 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~278202-278444 zf-CCHC_4 PF14392.1 g94376.t1 - 0.00043 19.8 1.4 0.00077 19 1 1.6 1 1 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:767585-767803 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~767585-767803 Remorin_N PF03766.8 g72957.t1 - 0.0035 17 1 0.0048 16.6 0.7 1.2 1 0 0 1 1 1 1 Remorin, N-terminal region | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:122615-122845 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~122615-122845 DUF3146 PF11344.3 g75693.t1 - 0.068 12.6 0 0.11 11.9 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3146) | Ref_seq=scaffold1579_contigs=3, transcript_loc=scaffold1579_contigs=3:29820-30874 Augustus predicted protein sequence Tobacco scaffold1579_contigs=3~29820-30874 AvrPtoB-E3_ubiq PF09046.5 g116795.t1 - 0.13 12.2 0.1 0.2 11.6 0 1.3 1 0 0 1 1 1 0 AvrPtoB E3 ubiquitin ligase | Ref_seq=scaffold2676_contigs=4, transcript_loc=scaffold2676_contigs=4:35003-36382 Augustus predicted protein sequence Tobacco scaffold2676_contigs=4~35003-36382 ANAPC15 PF15243.1 g119634.t1 - 0.092 12.8 7.3 0.13 12.3 5 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 15 | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:116209-118221 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~116209-118221 MSA_2 PF00985.12 g71980.t1 - 0.04 14 0.6 0.047 13.8 0.4 1 1 0 0 1 1 1 0 Merozoite Surface Antigen 2 (MSA-2) family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:14232-14468 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~14232-14468 Xpo1 PF08389.7 g88118.t1 - 0.0088 15.9 0.2 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 Exportin 1-like protein | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:164340-166029 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~164340-166029 DUF4283 PF14111.1 g11148.t1 - 0.000013 24.3 0 0.00002 23.7 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:230506-231159 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~230506-231159 PRP8_domainIV PF12134.3 g49866.t1 - 0.098 11.9 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 PRP8 domain IV core | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:273606-275117 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~273606-275117 Lipase_chap PF03280.9 g54398.t1 - 0.0054 16.2 0 0.0059 16.1 0 1.1 1 0 0 1 1 1 1 Proteobacterial lipase chaperone protein | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:270195-270649 Augustus predicted protein sequence Tobacco scaffold1207_contigs=28~270195-270649 MVL PF12151.3 g94127.t1 - 0.22 11.1 3.6 14 5.4 0.2 3 2 0 0 2 2 2 0 Mannan-binding protein | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:14724-15210 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~14724-15210 DUF1955 PF09205.5 g40431.t1 - 0.062 12.8 2 0.1 12.1 1.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1955) | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:165148-166544 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~165148-166544 LrgA PF03788.9 g124833.t1 - 0.024 14.3 0 0.032 13.9 0 1.2 1 0 0 1 1 1 0 LrgA family | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:229065-229590 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~229065-229590 zf-CCHC PF00098.18 g100996.t1 - 0.021 14.7 0.1 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:533577-535093 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~533577-535093 DUF1313 PF07011.6 g43399.t1 - 0.11 12.1 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1313) | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:147655-147972 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~147655-147972 DUF1041 PF06292.12 g39395.t1 - 0.13 12.4 0 0.17 12 0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1041) | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:58378-58854 Augustus predicted protein sequence Tobacco scaffold954_contigs=1~58378-58854 IP_trans PF02121.13 g12704.t1 - 0.0043 16.2 0.2 0.0073 15.5 0.1 1.3 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:310879-312145 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~310879-312145 TRH PF05438.7 g119951.t1 - 0.039 13.3 0.9 0.045 13.1 0.6 1.3 1 1 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:103427-103741 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~103427-103741 Ribosomal_S8 PF00410.14 g127939.t1 - 0.11 12.3 0 0.31 10.9 0 1.6 2 0 0 2 2 2 0 Ribosomal protein S8 | Ref_seq=scaffold2842_contigs=1, transcript_loc=scaffold2842_contigs=1:48662-49657 Augustus predicted protein sequence Tobacco scaffold2842_contigs=1~48662-49657 Zip PF02535.17 g125722.t1 - 0.65 8.9 2.7 0.8 8.6 1.8 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:128492-129233 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~128492-129233 BicD PF09730.4 g50136.t1 - 0.0057 15 6.1 0.0076 14.6 4.3 1.1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:365424-366254 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~365424-366254 DUF3562 PF12085.3 g4230.t1 - 0.12 12.1 0.1 0.21 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:92473-92718 Augustus predicted protein sequence Tobacco scaffold255_contigs=10~92473-92718 RRF PF01765.14 g45177.t1 - 0.0093 15.4 0.5 0.013 14.9 0.3 1.3 1 1 0 1 1 1 1 Ribosome recycling factor | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:10980-11387 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~10980-11387 DUF4463 PF14703.1 g98526.t1 - 0.089 13.3 0.4 0.13 12.8 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4463) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:63315-63841 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~63315-63841 Complex1_49kDa PF00346.14 g12211.t1 - 0.067 12.1 0 0.073 12 0 1.2 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:342106-343581 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~342106-343581 SipA PF09052.5 g118248.t1 - 0.096 11 3 0.11 10.8 2 1.1 1 0 0 1 1 1 0 Salmonella invasion protein A | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:197354-198418 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~197354-198418 RsbRD_N PF14361.1 g84184.t1 - 0.12 12.8 0 0.15 12.4 0 1.1 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain | Ref_seq=scaffold1814_contigs=1, transcript_loc=scaffold1814_contigs=1:11746-12126 Augustus predicted protein sequence Tobacco scaffold1814_contigs=1~11746-12126 DUF2968 PF11180.3 g75385.t1 - 0.031 13.6 0.4 0.034 13.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:299934-300176 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~299934-300176 SlyX PF04102.7 g97182.t1 - 0.082 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:224263-224502 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~224263-224502 ATHILA PF03078.10 g56200.t1 - 0.000016 23.6 0 0.000017 23.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:225524-225790 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~225524-225790 eRF1_2 PF03464.10 g120110.t1 - 0.14 12.5 0.1 1.3 9.3 0 2 1 1 1 2 2 2 0 eRF1 domain 2 | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:59750-60333 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~59750-60333 DUF2420 PF10336.4 g63899.t1 - 0.00024 20.6 0.3 0.00029 20.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2420) | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:222616-223798 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~222616-223798 YlbE PF14003.1 g129760.t1 - 0.11 12.5 0 11 6.2 0 2 2 0 0 2 2 2 0 YlbE-like protein | Ref_seq=scaffold3052_contigs=1, transcript_loc=scaffold3052_contigs=1:6692-6928 Augustus predicted protein sequence Tobacco scaffold3052_contigs=1~6692-6928 DUF4391 PF14335.1 g40940.t1 - 0.023 14.1 0.1 0.43 9.9 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4391) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:226087-226404 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~226087-226404 MCC-bdg_PDZ PF10506.4 g64752.t1 - 0.032 14 0.2 0.069 12.9 0.1 1.5 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:68027-68587 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~68027-68587 NIPSNAP PF07978.8 g104781.t1 - 0.0053 16.7 0 0.0072 16.2 0 1.2 1 0 0 1 1 1 1 NIPSNAP | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:249513-249953 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~249513-249953 DUF4219 PF13961.1 g82651.t1 - 0.0023 17.3 0.2 0.0041 16.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:85269-87034 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~85269-87034 GSHPx PF00255.14 g17691.t1 - 0.1 11.9 0 0.17 11.3 0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:86511-89624 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~86511-89624 P4Ha_N PF08336.6 g3200.t1 - 0.083 12.7 0.6 0.16 11.7 0.4 1.4 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:7809-10230 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~7809-10230 Hpt PF01627.18 g101844.t1 - 0.00027 20.8 0.6 0.00038 20.3 0.1 1.6 2 0 0 2 2 2 1 Hpt domain | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:101323-102061 Augustus predicted protein sequence Tobacco scaffold2223_contigs=8~101323-102061 Trichoplein PF13868.1 g86030.t1 - 4.4 5.6 9.2 0.089 11.1 1.4 1.6 2 0 0 2 2 2 0 Tumour suppressor, Mitostatin | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:38932-39392 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~38932-39392 NAM-associated PF14303.1 g66906.t1 - 0.00028 21.2 2.8 0.00034 20.9 1.9 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:97105-99025 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~97105-99025 Big_3 PF07523.7 g15860.t1 - 0.087 12.9 0 0.14 12.2 0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold505_contigs=11, transcript_loc=scaffold505_contigs=11:136631-137542 Augustus predicted protein sequence Tobacco scaffold505_contigs=11~136631-137542 ATHILA PF03078.10 g114762.t1 - 0.00014 20.6 0.1 0.00015 20.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:63094-63363 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~63094-63363 IRF-3 PF10401.4 g16093.t1 - 0.022 14.3 0 0.027 14 0 1.1 1 0 0 1 1 1 0 Interferon-regulatory factor 3 | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:295284-296235 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~295284-296235 Myc_N PF01056.13 g34645.t1 - 0.049 12.7 5.2 0.059 12.5 3.6 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:3680-4685 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~3680-4685 Dimer_Tnp_hAT PF05699.9 g92022.t1 - 0.000000021 33.6 0 0.000000032 33 0 1.3 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1981_contigs=8, transcript_loc=scaffold1981_contigs=8:501799-503197 Augustus predicted protein sequence Tobacco scaffold1981_contigs=8~501799-503197 PLA2G12 PF06951.6 g95627.t1 - 0.0055 16.3 2.5 0.8 9.3 0.1 2 1 1 0 2 2 2 2 Group XII secretory phospholipase A2 precursor (PLA2G12) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:172981-173913 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~172981-173913 DUF2043 PF09740.4 g52483.t1 - 0.11 12.5 0 0.11 12.5 0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:345125-345511 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~345125-345511 VGCC_beta4Aa_N PF12052.3 g50201.t1 - 0.097 12.5 0.2 0.14 12 0.1 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:121340-121723 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~121340-121723 Adeno_E1B_55K_N PF04623.7 g103416.t1 - 0.2 12.1 2.4 0.59 10.6 1.7 1.8 1 0 0 1 1 1 0 Adenovirus E1B protein N-terminus | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:448363-449443 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~448363-449443 Methyltransf_27 PF13708.1 g59789.t1 - 0.14 11.6 0 0.17 11.4 0 1.1 1 0 0 1 1 1 0 Methyltransferase domain | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:193177-193464 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~193177-193464 HTH_Tnp_Tc3_1 PF11427.3 g109710.t1 - 0.0046 16.5 0.3 0.011 15.3 0.2 1.8 1 1 0 1 1 1 1 Tc3 transposase | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:354120-354410 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~354120-354410 CENP-F_leu_zip PF10473.4 g27876.t1 - 0.0026 17.6 4.2 0.003 17.4 2.9 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:476854-477114 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~476854-477114 Toxin_18 PF08087.6 g120609.t1 - 0.17 11.6 3.8 0.23 11.2 2.6 1.2 1 0 0 1 1 1 0 Conotoxin O-superfamily | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:324304-324661 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~324304-324661 zf-CCHC_5 PF14787.1 g112456.t1 - 0.01 15.2 2.9 0.017 14.5 2 1.4 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:76469-76832 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~76469-76832 BBS1 PF14779.1 g28638.t1 - 0.13 11.2 0 0.2 10.5 0 1.3 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 1 | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:15103-16030 Augustus predicted protein sequence Tobacco scaffold750_contigs=7~15103-16030 T6SS-SciN PF12790.2 g36036.t1 - 0.12 11.9 0 0.17 11.4 0 1.2 1 0 0 1 1 1 0 Type VI secretion lipoprotein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:136245-136759 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~136245-136759 DUF4004 PF13171.1 g106643.t1 - 0.15 12.1 0.1 0.18 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4004) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:256630-256875 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~256630-256875 DEC-1_N PF04625.8 g46462.t1 - 2.1 6.9 4.4 2.5 6.6 3 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:479710-480358 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~479710-480358 IGPS PF00218.16 g126274.t1 - 0.069 12.1 0 0.1 11.6 0 1.1 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:84181-87314 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~84181-87314 GluR_Homer-bdg PF10606.4 g129833.t1 - 0.04 13.7 0 0.046 13.6 0 1.1 1 0 0 1 1 1 0 Homer-binding domain of metabotropic glutamate receptor | Ref_seq=scaffold3098_contigs=1, transcript_loc=scaffold3098_contigs=1:1-132 Augustus predicted protein sequence Tobacco scaffold3098_contigs=1~1-132 DUF4050 PF13259.1 g42593.t1 - 0.13 12.1 0.4 0.14 12 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4050) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:127370-128198 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~127370-128198 DUF2531 PF10748.4 g2987.t1 - 0.0014 17.8 3.3 0.0017 17.5 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2531) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:59319-60145 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~59319-60145 DUF1528 PF07515.6 g53584.t1 - 0.013 15.5 0.1 0.023 14.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1528) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:143169-145323 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~143169-145323 DUF1844 PF08899.6 g16848.t1 - 0.035 14 0.1 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1844) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:6638-9127 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~6638-9127 Herpes_LAMP2 PF06126.6 g27098.t1 - 0.044 12.1 0.1 0.051 11.9 0.1 1 1 0 0 1 1 1 0 Herpesvirus Latent membrane protein 2 | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:92750-93088 Augustus predicted protein sequence Tobacco scaffold721_contigs=12~92750-93088 FlgN PF05130.7 g69684.t1 - 0.12 12.6 4.1 0.16 12.2 2.8 1.1 1 0 0 1 1 1 0 FlgN protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:889427-889798 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~889427-889798 DUF2909 PF11137.3 g117636.t1 - 0.064 13 0.3 0.15 11.8 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:205835-206400 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~205835-206400 ZapA PF05164.8 g93711.t1 - 0.0033 17.3 0.1 0.0034 17.3 0 1 1 0 0 1 1 1 1 Cell division protein ZapA | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:413442-413642 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~413442-413642 NTF2 PF02136.15 g69763.t1 - 0.1 12.9 0.2 0.13 12.5 0.1 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:92272-92727 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~92272-92727 Lge1 PF11488.3 g45439.t1 - 0.1 12.8 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:439563-440121 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~439563-440121 Trypan_PARP PF05887.6 g50157.t1 - 0.0027 17.5 8.7 0.0027 17.5 6.1 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:28667-29210 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~28667-29210 VGCC_beta4Aa_N PF12052.3 g16838.t1 - 0.12 12.3 0.6 1 9.2 0.1 2.5 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:585112-585471 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~585112-585471 LRS4 PF10422.4 g83125.t1 - 0.00002 24 8.4 0.000026 23.6 5.8 1.2 1 0 0 1 1 1 1 Monopolin complex subunit LRS4 | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:129461-130149 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~129461-130149 CENP-F_N PF10481.4 g104190.t1 - 0.15 11.3 0.5 0.18 11.1 0.3 1.1 1 0 0 1 1 1 0 Cenp-F N-terminal domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:18254-18691 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~18254-18691 Gryzun PF07919.7 g6262.t1 - 0.11 10.8 0 0.11 10.7 0 1 1 0 0 1 1 1 0 Gryzun, putative trafficking through Golgi | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:368292-368885 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~368292-368885 DUF4589 PF15252.1 g97813.t1 - 0.11 12.2 1.4 0.14 11.9 1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4589) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:214747-215208 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~214747-215208 Nuclease_act PF08133.6 g45905.t1 - 0.13 11.8 0.1 0.13 11.8 0.1 1.6 2 0 0 2 2 2 0 Anticodon nuclease activator family | Ref_seq=scaffold1052_contigs=4, transcript_loc=scaffold1052_contigs=4:3588-4220 Augustus predicted protein sequence Tobacco scaffold1052_contigs=4~3588-4220 Zn_Tnp_IS1 PF03811.8 g44743.t1 - 0.22 11 0.1 0.22 11 0.1 1.6 2 0 0 2 2 2 0 InsA N-terminal domain | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:190551-191306 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~190551-191306 DUF2420 PF10336.4 g12411.t1 - 0.01 15.3 0 0.015 14.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:197926-198177 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~197926-198177 MRP-S28 PF10213.4 g10095.t1 - 0.012 15.6 5.6 0.022 14.8 3.8 1.4 1 1 0 1 1 1 0 Mitochondrial ribosomal subunit protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:102909-103718 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~102909-103718 DUF244 PF03112.9 g41258.t1 - 0.14 11.7 0 0.16 11.4 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein family (ORF7) DUF | Ref_seq=scaffold986_contigs=2, transcript_loc=scaffold986_contigs=2:49685-50837 Augustus predicted protein sequence Tobacco scaffold986_contigs=2~49685-50837 Med25_SD1 PF11235.3 g31660.t1 - 0.29 11.4 10 0.32 11.2 7 1 1 0 0 1 1 1 0 Mediator complex subunit 25 synapsin 1 | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:45939-46387 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~45939-46387 ATXN-1_C PF12547.3 g47222.t1 - 0.29 11.1 1.6 0.7 9.8 1.1 1.7 1 0 0 1 1 1 0 Capicua transcriptional repressor modulator | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:391669-393223 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~391669-393223 ERM PF00769.14 g21802.t1 - 0.1 12 0.4 0.11 11.9 0.3 1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:214308-214553 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~214308-214553 DNA_pol_viral_N PF00242.12 g72407.t1 - 0.59 9.1 8.1 0.74 8.7 5.6 1 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1041773-1042862 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1041773-1042862 Peptidase_C48 PF02902.14 g93232.t1 - 0.083 12.4 0 0.089 12.4 0 1.2 1 0 0 1 1 1 0 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:18676-19014 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~18676-19014 DUF1421 PF07223.6 g75011.t1 - 0.0098 15.7 5.9 0.012 15.4 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1421) | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:295194-295529 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~295194-295529 Streptin-Immun PF11083.3 g66308.t1 - 0.033 14.1 0 3.3 7.7 0 2.1 1 1 1 2 2 2 0 Lantibiotic streptin immunity protein | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:147563-148321 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~147563-148321 DUF4452 PF14618.1 g48701.t1 - 0.016 15 1.4 0.033 13.9 1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4452) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:174057-174764 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~174057-174764 APG17 PF04108.7 g74566.t1 - 0.001 17.9 0.3 0.0013 17.6 0.2 1 1 0 0 1 1 1 1 Autophagy protein Apg17 | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:175061-175501 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~175061-175501 DUF4489 PF14879.1 g21264.t1 - 0.079 12.6 0.2 0.092 12.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4489) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:98663-98905 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~98663-98905 Porphobil_deam PF01379.15 g124142.t1 - 0.079 11.8 0 0.087 11.7 0 1 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1429159-1429359 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1429159-1429359 Calici_coat PF00915.15 g106261.t1 - 0.073 11.9 0 0.088 11.7 0 1 1 0 0 1 1 1 0 Calicivirus coat protein | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:20379-20881 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~20379-20881 PRTase_3 PF15610.1 g59499.t1 - 0.067 12 0 0.076 11.9 0 1 1 0 0 1 1 1 0 PRTase ComF-like | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:195563-195811 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~195563-195811 DBD_Tnp_Mut PF03108.10 g60719.t1 - 0.000000012 34.3 0.1 0.000000014 34.2 0.1 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:10508-10774 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~10508-10774 RLI PF04068.10 g96491.t1 - 0.66 9.6 0 0.66 9.6 0 2.4 3 0 0 3 3 3 0 Possible Fer4-like domain in RNase L inhibitor, RLI | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:148018-148411 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~148018-148411 Cytochrom_C550 PF14495.1 g88525.t1 - 0.065 12.6 0 3.2 7.2 0 2.1 2 0 0 2 2 2 0 Cytochrome c-550 domain | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:29025-29579 Augustus predicted protein sequence Tobacco scaffold1928_contigs=20~29025-29579 p47_phox_C PF08944.6 g67325.t1 - 0.13 12.4 0.5 0.32 11.2 0 1.8 2 0 0 2 2 2 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:49284-49658 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~49284-49658 MUG2_C PF08593.5 g35212.t1 - 0.053 13.7 0.1 0.087 13 0.1 1.3 1 0 0 1 1 1 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:202395-202778 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~202395-202778 DUF3381 PF11861.3 g86767.t1 - 0.0089 15.5 0 0.0091 15.5 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3381) | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:83041-83295 Augustus predicted protein sequence Tobacco scaffold1861_contigs=7~83041-83295 PBP1_TM PF14812.1 g23207.t1 - 0.036 14.3 4.5 0.069 13.4 3.1 1.4 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:22200-22582 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~22200-22582 Baculo_p24 PF05073.7 g70293.t1 - 0.077 12.5 0 0.097 12.2 0 1.2 1 0 0 1 1 1 0 Baculovirus P24 capsid protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:240839-241324 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~240839-241324 DUF4002 PF13164.1 g1361.t1 - 1.6 8.7 9.7 1.1 9.3 5 2 2 1 0 2 2 2 0 Protein of unknown function (DUF4002) | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:49810-50948 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~49810-50948 UBN2 PF14223.1 g42248.t1 - 0.0025 17.5 1.3 0.0025 17.5 0.9 3.3 3 2 0 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:264960-266732 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~264960-266732 Ral PF11058.3 g99595.t1 - 0.12 11.7 0 0.18 11.1 0 1.2 1 0 0 1 1 1 0 Antirestriction protein Ral | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:60362-60703 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~60362-60703 GvpK PF05121.7 g107863.t1 - 0.0094 15.7 0 0.0096 15.7 0 1.1 1 0 0 1 1 1 1 Gas vesicle protein K | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:359783-360001 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~359783-360001 STOP PF05217.7 g113316.t1 - 0.22 11.1 3 0.24 11 2.1 1 1 0 0 1 1 1 0 STOP protein | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:79942-80181 Augustus predicted protein sequence Tobacco scaffold2625_contigs=4~79942-80181 Cwf_Cwc_15 PF04889.7 g36550.t1 - 0.01 15.5 1.3 0.011 15.4 0.9 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:247405-247732 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~247405-247732 NAM-associated PF14303.1 g20511.t1 - 0.0072 16.6 8.5 0.0082 16.4 5.9 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:396533-396877 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~396533-396877 Vfa1 PF08432.5 g9888.t1 - 6.2 6.8 31.2 6.6 6.7 21.6 1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:257996-258202 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~257996-258202 rve_3 PF13683.1 g5702.t1 - 0.056 12.9 0 0.075 12.5 0 1.3 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:240753-241479 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~240753-241479 Aminotran_4 PF01063.14 g102505.t1 - 0.1 12 0 9.6 5.5 0 2.1 2 0 0 2 2 2 0 Aminotransferase class IV | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:33115-36294 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~33115-36294 DUF1691 PF07950.6 g46179.t1 - 5.8 6.8 7.1 28 4.6 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1691) | Ref_seq=scaffold1056_contigs=5, transcript_loc=scaffold1056_contigs=5:26371-30397 Augustus predicted protein sequence Tobacco scaffold1056_contigs=5~26371-30397 CDC48_2 PF02933.12 g7707.t1 - 0.00049 19.6 0 0.7 9.5 0 2.1 2 0 0 2 2 2 2 Cell division protein 48 (CDC48), domain 2 | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:43171-43632 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~43171-43632 TetR PF13972.1 g66886.t1 - 0.041 13.3 0.1 0.051 13 0 1.2 1 0 0 1 1 1 0 Bacterial transcriptional repressor | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:41560-41901 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~41560-41901 ATG2_CAD PF13329.1 g124351.t1 - 0.021 14.3 0.5 0.025 14.1 0.3 1.1 1 0 0 1 1 1 0 Autophagy-related protein 2 CAD motif | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1995056-1995448 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1995056-1995448 Peptidase_U32 PF01136.14 g70740.t1 - 0.024 13.5 0 0.026 13.4 0 1.1 1 0 0 1 1 1 0 Peptidase family U32 | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:82355-83227 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~82355-83227 DUF3304 PF11745.3 g83115.t1 - 0.1 12.7 0.4 0.14 12.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3304) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:115843-116674 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~115843-116674 DUF842 PF05811.8 g130466.t1 - 0.63 9.5 6.3 3.6 7 0.4 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold4634_contigs=1, transcript_loc=scaffold4634_contigs=1:58-612 Augustus predicted protein sequence Tobacco scaffold4634_contigs=1~58-612 Snapin_Pallidin PF14712.1 g14091.t1 - 0.16 12.3 1.6 1.4 9.2 0.4 2.2 2 0 0 2 2 2 0 Snapin/Pallidin | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:236570-237094 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~236570-237094 Bombolitin PF08096.6 g78752.t1 - 0.14 12.2 1.2 0.16 12 0.1 1.8 2 0 0 2 2 2 0 Bombolitin family | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:90041-90421 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~90041-90421 SPO11_like PF03533.9 g99874.t1 - 0.028 14.3 0.5 2.1 8.3 0.1 2.4 2 0 0 2 2 2 0 SPO11 homologue | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:309199-309474 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~309199-309474 PriCT_1 PF08708.6 g24298.t1 - 0.058 13.2 0 0.077 12.8 0 1.2 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:73605-74396 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~73605-74396 DUF1285 PF06938.6 g75122.t1 - 0.046 13.7 0.4 0.16 11.9 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1285) | Ref_seq=scaffold1567_contigs=2, transcript_loc=scaffold1567_contigs=2:67766-69547 Augustus predicted protein sequence Tobacco scaffold1567_contigs=2~67766-69547 DUF2436 PF10365.4 g26909.t1 - 0.085 12.4 0 0.12 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2436) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:503200-504007 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~503200-504007 Haemolytic PF01809.13 g10633.t1 - 0.035 13.7 0 0.042 13.4 0 1.2 1 0 0 1 1 1 0 Haemolytic domain | Ref_seq=scaffold389_contigs=8, transcript_loc=scaffold389_contigs=8:32885-33133 Augustus predicted protein sequence Tobacco scaffold389_contigs=8~32885-33133 Daxx PF03344.10 g38008.t1 - 0.002 16.7 19.7 0.0022 16.5 13.6 1 1 0 0 1 1 1 1 Daxx Family | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:10782-11954 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~10782-11954 Fer4_7 PF12838.2 g108000.t1 - 0.027 14.8 0.1 0.035 14.5 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:56511-56792 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~56511-56792 DUF2652 PF10851.3 g42886.t1 - 0.014 15.4 1.1 0.65 10 0.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2652) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:811497-811883 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~811497-811883 LRV_FeS PF05484.6 g112332.t1 - 4.2 7 7.8 18 5 1.1 3.8 3 1 1 4 4 4 0 LRV protein FeS4 cluster | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:107488-108788 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~107488-108788 Imm24 PF15570.1 g10940.t1 - 0.11 12.2 0 0.13 11.9 0 1.2 1 0 0 1 1 1 0 Immunity protein 24 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:279026-279476 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~279026-279476 DUF3446 PF11928.3 g3070.t1 - 0.019 15.1 3.6 0.021 14.9 2.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3446) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:269781-269999 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~269781-269999 DM PF00751.13 g113046.t1 - 0.04 13.4 1.5 0.04 13.4 1 1.9 2 0 0 2 2 2 0 DM DNA binding domain | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:229732-230010 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~229732-230010 Ig_2 PF13895.1 g88609.t1 - 0.11 12.6 0.4 12 6.1 0.1 2.1 1 1 1 2 2 2 0 Immunoglobulin domain | Ref_seq=scaffold1931_contigs=8, transcript_loc=scaffold1931_contigs=8:29874-30340 Augustus predicted protein sequence Tobacco scaffold1931_contigs=8~29874-30340 DUF1151 PF06625.6 g69131.t1 - 0.079 12.6 0.1 0.17 11.6 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1151) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:527834-528124 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~527834-528124 Curto_V2 PF07325.6 g63347.t1 - 0.078 12.6 1.1 0.11 12.1 0.7 1.2 1 0 0 1 1 1 0 Curtovirus V2 protein | Ref_seq=scaffold1372_contigs=4, transcript_loc=scaffold1372_contigs=4:53356-54062 Augustus predicted protein sequence Tobacco scaffold1372_contigs=4~53356-54062 DUF4611 PF15387.1 g79949.t1 - 0.17 12 0.1 0.17 12 0.1 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:337564-338237 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~337564-338237 Keratin_B2 PF01500.12 g51766.t1 - 0.029 14.1 0.3 0.033 13.9 0.2 1.1 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:206403-206675 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~206403-206675 Kisspeptin PF15152.1 g89928.t1 - 0.07 13.8 0.2 0.09 13.4 0.2 1.2 1 0 0 1 1 1 0 Kisspeptin | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:64011-64247 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~64011-64247 NicO PF03824.11 g98920.t1 - 0.059 12.6 0.1 0.076 12.3 0 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:43716-44322 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~43716-44322 IncA PF04156.9 g88684.t1 - 0.025 14.1 3 0.037 13.6 2.1 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:162791-163512 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~162791-163512 DUF1908 PF08926.6 g77623.t1 - 0.05 12.3 0.4 0.06 12 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:196113-197360 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~196113-197360 DUF722 PF05263.6 g118408.t1 - 0.052 13.6 0.3 0.34 11 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF722) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:643163-646134 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~643163-646134 DUF2385 PF09539.5 g10135.t1 - 0.0037 17.6 1 0.0048 17.2 0.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2385) | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:109931-110467 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~109931-110467 zf-CCHC PF00098.18 g24158.t1 - 0.0074 16.1 0 0.012 15.4 0 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:63886-64230 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~63886-64230 FeS PF04060.8 g105185.t1 - 0.0013 18.2 1.1 0.0022 17.5 0.7 1.3 1 0 0 1 1 1 1 Putative Fe-S cluster | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:509248-509787 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~509248-509787 Methyltransf_26 PF13659.1 g37631.t1 - 0.13 12.2 0 0.18 11.8 0 1.4 1 0 0 1 1 1 0 Methyltransferase domain | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:98849-99862 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~98849-99862 DUF455 PF04305.9 g115585.t1 - 0.075 12.2 0.5 0.084 12.1 0.3 1 1 0 0 1 1 1 0 Protein of unknown function (DUF455) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:682718-683005 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~682718-683005 Sterol_MT_C PF08498.5 g35333.t1 - 0.054 13.4 0 0.076 12.9 0 1.2 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal | Ref_seq=scaffold867_contigs=4, transcript_loc=scaffold867_contigs=4:75022-75351 Augustus predicted protein sequence Tobacco scaffold867_contigs=4~75022-75351 PKK PF12474.3 g14311.t1 - 0.01 15.5 0 0.013 15.1 0 1.1 1 0 0 1 1 1 0 Polo kinase kinase | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:139328-139651 Augustus predicted protein sequence Tobacco scaffold469_contigs=1~139328-139651 XFP_N PF09364.5 g106760.t1 - 0.035 12.6 0 0.05 12.1 0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:532241-533318 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~532241-533318 ATHILA PF03078.10 g77374.t1 - 0.001 17.7 0 0.0011 17.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:391045-391299 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~391045-391299 FF PF01846.14 g60137.t1 - 0.093 12.7 0.1 0.21 11.5 0 1.6 1 0 0 1 1 1 0 FF domain | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:80571-80957 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~80571-80957 Flu_B_M2 PF04772.7 g14835.t1 - 0.14 12.2 2.1 0.29 11.2 0.1 2 2 0 0 2 2 2 0 Influenza B matrix protein 2 (BM2) | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:17403-17750 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~17403-17750 DUF4476 PF14771.1 g23113.t1 - 0.071 13.1 0 0.12 12.3 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4476) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:145947-146662 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~145947-146662 RVT_3 PF13456.1 g8159.t1 - 0.00022 20.9 0 0.00027 20.6 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:149611-149820 Augustus predicted protein sequence Tobacco scaffold330_contigs=6~149611-149820 SAM_1 PF00536.25 g26829.t1 - 0.17 12 0.8 53 4 0.1 3.2 2 1 0 2 2 2 0 SAM domain (Sterile alpha motif) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:370576-372456 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~370576-372456 DUF2420 PF10336.4 g54145.t1 - 0.012 15.2 1.9 0.025 14.1 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2420) | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:13319-13880 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~13319-13880 DUF2457 PF10446.4 g28126.t1 - 0.02 13.6 7 0.019 13.7 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:123363-123698 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~123363-123698 CNF1 PF05785.7 g34477.t1 - 0.095 11.5 0 0.15 10.9 0 1.3 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:115394-117222 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~115394-117222 DUF4200 PF13863.1 g71479.t1 - 0.1 12.5 2 0.14 12 1.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:99520-99813 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~99520-99813 Fib_alpha PF08702.5 g63058.t1 - 0.11 12.6 0.8 0.13 12.3 0.5 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family | Ref_seq=scaffold1363_contigs=4, transcript_loc=scaffold1363_contigs=4:40006-40344 Augustus predicted protein sequence Tobacco scaffold1363_contigs=4~40006-40344 DUF3851 PF12962.2 g111601.t1 - 0.05 13.6 0 0.061 13.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3851) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:409-1241 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~409-1241 DUF948 PF06103.6 g32202.t1 - 0.0096 15.7 1 0.015 15.1 0.7 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:319850-322557 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~319850-322557 Biopterin_H PF00351.16 g130340.t1 - 0.061 12 0 0.061 12 0 1 1 0 0 1 1 1 0 Biopterin-dependent aromatic amino acid hydroxylase | Ref_seq=scaffold4092_contigs=1, transcript_loc=scaffold4092_contigs=1:1-161 Augustus predicted protein sequence Tobacco scaffold4092_contigs=1~1-161 DUF2773 PF10971.3 g113777.t1 - 0.027 14.4 0 0.032 14.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2773) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:404354-404554 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~404354-404554 zf-CCHC PF00098.18 g86246.t1 - 0.021 14.7 2 0.043 13.7 1.4 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:308215-309066 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~308215-309066 DUF3240 PF11582.3 g105270.t1 - 0.096 12.6 0.2 14 5.6 0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3240) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:162592-165566 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~162592-165566 Trypan_PARP PF05887.6 g58732.t1 - 4.7 7 14.7 7.8 6.3 10.2 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:593041-593541 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~593041-593541 ATHILA PF03078.10 g75859.t1 - 0.012 14.1 0 0.017 13.7 0 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:34512-35436 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~34512-35436 DUF2856 PF11043.3 g42219.t1 - 0.026 14.6 0.9 3.8 7.6 0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2856) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:201819-202767 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~201819-202767 DUF2096 PF09869.4 g3954.t1 - 0.012 15.5 0 0.016 15.1 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:148408-149771 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~148408-149771 CCDC32 PF14989.1 g69257.t1 - 0.019 14.7 0.1 0.026 14.3 0.1 1.2 1 0 0 1 1 1 0 Coiled-coil domain containing 32 | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:83495-83854 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~83495-83854 Cut8_C PF08559.5 g103708.t1 - 0.068 12.9 0 13 5.5 0 2.2 2 0 0 2 2 2 0 Cut8 six-helix bundle | Ref_seq=scaffold2313_contigs=8, transcript_loc=scaffold2313_contigs=8:6159-7527 Augustus predicted protein sequence Tobacco scaffold2313_contigs=8~6159-7527 FXa_inhibition PF14670.1 g32379.t1 - 3.6 7.7 5.1 1.8 8.7 1.8 1.9 2 1 0 2 2 2 0 Coagulation Factor Xa inhibitory site | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:25065-25460 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~25065-25460 Rsa3 PF14615.1 g50328.t1 - 0.015 14.5 0.3 0.2 10.9 0.1 2.1 2 0 0 2 2 2 0 Ribosome-assembly protein 3 | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:73281-73997 Augustus predicted protein sequence Tobacco scaffold1137_contigs=5~73281-73997 CLTH PF10607.4 g123443.t1 - 0.13 11.9 0 0.14 11.8 0 1.1 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain | Ref_seq=scaffold2758_contigs=5, transcript_loc=scaffold2758_contigs=5:170404-170661 Augustus predicted protein sequence Tobacco scaffold2758_contigs=5~170404-170661 UBN2 PF14223.1 g77126.t1 - 0.0038 17 0.1 0.005 16.6 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:64990-65455 Augustus predicted protein sequence Tobacco scaffold1626_contigs=2~64990-65455 SH3BGR PF04908.10 g106195.t1 - 0.04 13.8 0.2 0.072 13 0.2 1.4 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:95710-96774 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~95710-96774 TYA PF01021.14 g42249.t1 - 0.051 13.7 0.1 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 TYA transposon protein | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:269528-270349 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~269528-270349 DUF1979 PF09322.5 g24285.t1 - 0.067 12.8 0.2 0.35 10.5 0 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF1979) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:44374-45481 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~44374-45481 Arabinose_bd PF12625.2 g42773.t1 - 0.13 12 0 0.14 11.9 0 1.1 1 0 0 1 1 1 0 Arabinose-binding domain of AraC transcription regulator, N-term | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:550449-551386 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~550449-551386 SNF5 PF04855.7 g68923.t1 - 0.11 11.8 0 0.14 11.6 0 1.2 1 0 0 1 1 1 0 SNF5 / SMARCB1 / INI1 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:142022-142602 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~142022-142602 DUF4484 PF14831.1 g2187.t1 - 0.13 12.3 0.6 0.14 12.2 0.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4484) | Ref_seq=scaffold203_contigs=2, transcript_loc=scaffold203_contigs=2:41637-41897 Augustus predicted protein sequence Tobacco scaffold203_contigs=2~41637-41897 EBV-NA3 PF05009.7 g8065.t1 - 0.17 11.1 1.4 0.18 11 1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold328_contigs=4, transcript_loc=scaffold328_contigs=4:14455-14682 Augustus predicted protein sequence Tobacco scaffold328_contigs=4~14455-14682 DASH_Dad4 PF08650.5 g27681.t1 - 0.013 15.3 3.5 0.022 14.6 2.4 1.3 1 0 0 1 1 1 0 DASH complex subunit Dad4 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:103040-103378 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~103040-103378 PMD PF10536.4 g125601.t1 - 0.0081 15.1 0 0.012 14.6 0 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:25010-28415 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~25010-28415 DUF2870 PF11069.3 g120822.t1 - 0.21 11.6 1.5 0.24 11.4 1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:269109-269312 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~269109-269312 zf-CCHC_5 PF14787.1 g58920.t1 - 0.0004 19.8 3.4 0.00074 18.9 2.4 1.5 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:226942-227360 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~226942-227360 DUF4413 PF14372.1 g20949.t1 - 0.0001 22.2 0.1 0.00016 21.5 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:123677-124006 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~123677-124006 PG_binding_4 PF12229.3 g83913.t1 - 0.053 13.7 0 0.33 11.2 0 2 2 0 0 2 2 2 0 Putative peptidoglycan binding domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:74264-75359 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~74264-75359 DUF3363 PF11843.3 g20618.t1 - 0.048 12.2 0.6 0.053 12.1 0.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:557860-558270 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~557860-558270 HHH_5 PF14520.1 g118627.t1 - 0.011 15.8 0 0.015 15.4 0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:270381-270653 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~270381-270653 MSV199 PF10553.4 g34824.t1 - 0.0046 16.8 0.5 0.0052 16.6 0.3 1.1 1 0 0 1 1 1 1 MSV199 domain | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:16143-16436 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~16143-16436 Poly_export PF02563.11 g122491.t1 - 0.036 13.8 0.1 0.057 13.1 0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:114017-114622 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~114017-114622 Orthoreo_P17 PF07272.6 g52436.t1 - 0.12 12.1 0 0.13 12 0 1.1 1 0 0 1 1 1 0 Orthoreovirus P17 protein | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:270317-271256 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~270317-271256 RVT_2 PF07727.9 g3869.t1 - 0.0074 15.2 0 0.011 14.7 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold245_contigs=3, transcript_loc=scaffold245_contigs=3:31712-32408 Augustus predicted protein sequence Tobacco scaffold245_contigs=3~31712-32408 DUF2442 PF10387.4 g11339.t1 - 0.15 12.1 0 0.2 11.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2442) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:217898-219427 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~217898-219427 7TM_GPCR_Srh PF10318.4 g38278.t1 - 0.016 14 0.1 0.016 14 0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:179432-179656 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~179432-179656 DpnD-PcfM PF14207.1 g8181.t1 - 0.046 13.4 4.2 0.17 11.6 2.9 1.9 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:4419-5600 Augustus predicted protein sequence Tobacco scaffold331_contigs=3~4419-5600 G0-G1_switch_2 PF15103.1 g59765.t1 - 0.022 14.9 1.4 0.042 14 0.1 1.8 1 1 1 2 2 2 0 G0/G1 switch protein 2 | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:163793-164083 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~163793-164083 PsbP PF01789.11 g101606.t1 - 0.0041 16.5 0.1 0.48 9.8 0 2.3 2 0 0 2 2 2 2 PsbP | Ref_seq=scaffold2213_contigs=11, transcript_loc=scaffold2213_contigs=11:37502-38377 Augustus predicted protein sequence Tobacco scaffold2213_contigs=11~37502-38377 DUF2191 PF09957.4 g95564.t1 - 0.0052 16.5 0 1.3 8.9 0 2.3 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2191) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:56248-57678 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~56248-57678 VLPT PF07122.6 g22482.t1 - 0.21 11.2 1.9 62 3.3 0 3.3 3 0 0 3 3 3 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:58381-59637 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~58381-59637 Exonuc_X-T_C PF08411.5 g50121.t1 - 0.094 11.7 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Exonuclease C-terminal | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:340539-340952 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~340539-340952 DUF4083 PF13314.1 g118498.t1 - 0.043 13.6 0.5 0.085 12.7 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:52922-54008 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~52922-54008 Trp_syntA PF00290.15 g98132.t1 - 0.12 10.8 0 0.15 10.5 0 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:277799-278152 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~277799-278152 ALMS_motif PF15309.1 g54208.t1 - 0.011 15.6 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 ALMS motif | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:19890-20108 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~19890-20108 ST7 PF04184.7 g17652.t1 - 0.073 11.3 0.6 0.077 11.2 0.4 1 1 0 0 1 1 1 0 ST7 protein | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:13167-13433 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~13167-13433 DUF4603 PF15376.1 g88184.t1 - 0.1 9.8 2 0.12 9.5 1.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4603) | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:325247-325785 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~325247-325785 MDMPI_C PF07398.6 g123313.t1 - 0.008 16.7 1.8 0.0091 16.5 0.9 1.4 1 1 0 1 1 1 1 MDMPI C-terminal domain | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:121412-122232 Augustus predicted protein sequence Tobacco scaffold2756_contigs=5~121412-122232 C1_4 PF07975.7 g15838.t1 - 0.012 15.6 9.5 0.078 12.9 0.3 3.1 3 0 0 3 3 3 0 TFIIH C1-like domain | Ref_seq=scaffold504_contigs=2, transcript_loc=scaffold504_contigs=2:2703-3011 Augustus predicted protein sequence Tobacco scaffold504_contigs=2~2703-3011 PsbL PF02419.12 g11173.t1 - 0.34 10.3 1.4 1.3 8.5 1 2 1 1 0 1 1 1 0 PsbL protein | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:275060-275468 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~275060-275468 TIMELESS_C PF05029.8 g125718.t1 - 0.035 13 1.8 0.04 12.8 1.3 1 1 0 0 1 1 1 0 Timeless protein C terminal region | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:122388-122621 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~122388-122621 TIR PF01582.15 g29332.t1 - 0.018 14.5 1.2 0.02 14.3 0.8 1.1 1 0 0 1 1 1 0 TIR domain | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:252060-252275 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~252060-252275 DUF104 PF01954.11 g93615.t1 - 0.21 11.6 1.1 0.29 11.1 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF104 | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:219349-219760 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~219349-219760 DUF4219 PF13961.1 g96198.t1 - 0.00017 20.9 0.2 0.00017 20.9 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:99427-99669 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~99427-99669 DUF1754 PF08555.5 g115014.t1 - 0.00021 21.8 11.1 0.00023 21.7 7.7 1.2 1 0 0 1 1 1 1 Eukaryotic family of unknown function (DUF1754) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:210496-211252 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~210496-211252 zf-CCHC PF00098.18 g22208.t1 - 0.0014 18.4 0.7 0.0014 18.4 0.5 3.3 5 0 0 5 5 5 1 Zinc knuckle | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:211147-211509 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~211147-211509 Alpha_GJ PF03229.8 g41763.t1 - 1.5 9.1 3.9 2 8.7 2.7 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:160929-161330 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~160929-161330 DUF4533 PF15047.1 g20037.t1 - 0.07 12.5 0.2 0.079 12.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4533) | Ref_seq=scaffold577_contigs=2, transcript_loc=scaffold577_contigs=2:44785-45063 Augustus predicted protein sequence Tobacco scaffold577_contigs=2~44785-45063 DUF2457 PF10446.4 g7325.t1 - 0.046 12.4 2.9 0.066 11.9 2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:23601-24486 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~23601-24486 UBN2 PF14223.1 g127148.t1 - 0.000049 23.1 0.4 0.00013 21.7 0 1.7 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:65705-66579 Augustus predicted protein sequence Tobacco scaffold2814_contigs=1~65705-66579 PBP1_TM PF14812.1 g86499.t1 - 2.6 8.3 6.3 4.2 7.7 4.4 1.3 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:487803-490455 Augustus predicted protein sequence Tobacco scaffold1848_contigs=19~487803-490455 GrpB PF04229.9 g75708.t1 - 0.025 14.3 0.8 0.028 14.1 0.5 1.1 1 0 0 1 1 1 0 GrpB protein | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:1622-2425 Augustus predicted protein sequence Tobacco scaffold1580_contigs=5~1622-2425 Fer4_17 PF13534.1 g69344.t1 - 0.033 14.5 1.4 0.051 13.9 1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:48224-48529 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~48224-48529 RVP_2 PF08284.6 g88974.t1 - 0.000004 26.7 0 0.0000043 26.6 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:324967-325239 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~324967-325239 ATG16 PF08614.6 g58916.t1 - 0.053 13.3 0.5 0.061 13.1 0.3 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:217767-218099 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~217767-218099 GAS PF13851.1 g13165.t1 - 0.025 13.7 7.2 0.043 13 5 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:283885-284883 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~283885-284883 RVT_3 PF13456.1 g94327.t1 - 0.01 15.5 0 0.014 15.1 0 1.5 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:609371-610037 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~609371-610037 DBD_Tnp_Mut PF03108.10 g10286.t1 - 0.000000031 33 0.1 0.000000047 32.4 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold385_contigs=8, transcript_loc=scaffold385_contigs=8:148716-149147 Augustus predicted protein sequence Tobacco scaffold385_contigs=8~148716-149147 SWIM PF04434.12 g128158.t1 - 0.000099 21.7 0.2 0.00013 21.2 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger | Ref_seq=scaffold2852_contigs=1, transcript_loc=scaffold2852_contigs=1:32849-33131 Augustus predicted protein sequence Tobacco scaffold2852_contigs=1~32849-33131 DUF148 PF02520.12 g127711.t1 - 0.019 14.7 2.2 0.03 14.1 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:35024-35572 Augustus predicted protein sequence Tobacco scaffold2834_contigs=1~35024-35572 THOC7 PF05615.8 g81082.t1 - 0.28 11.4 3.8 2.3 8.4 0.1 2.2 2 0 0 2 2 2 0 Tho complex subunit 7 | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:200133-201062 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~200133-201062 DUF2235 PF09994.4 g4730.t1 - 0.11 11.8 0.5 13 5 0 2.2 1 1 1 2 2 2 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:28916-31945 Augustus predicted protein sequence Tobacco scaffold261_contigs=2~28916-31945 Pinin_SDK_N PF04697.8 g81055.t1 - 0.025 14.6 1.4 0.035 14.1 0.9 1.2 1 0 0 1 1 1 0 pinin/SDK conserved region | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:127462-128002 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~127462-128002 Saccharop_dh_N PF04455.7 g67015.t1 - 0.15 12.2 0.1 0.33 11 0.1 1.6 1 0 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:354480-355399 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~354480-355399 PGG PF13962.1 g110887.t1 - 0.1 12.2 0 0.12 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:989249-989624 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~989249-989624 DUF504 PF04457.7 g4345.t1 - 0.016 15.3 0 0.028 14.5 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF504) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:60208-60546 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~60208-60546 ATHILA PF03078.10 g85281.t1 - 2.9E-009 36 0.1 3.4E-009 35.8 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:116395-117549 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~116395-117549 TOBE PF03459.12 g35412.t1 - 0.00041 20.3 5.2 2.1 8.5 0.2 4.1 2 1 2 4 4 4 3 TOBE domain | Ref_seq=scaffold873_contigs=2, transcript_loc=scaffold873_contigs=2:22934-23278 Augustus predicted protein sequence Tobacco scaffold873_contigs=2~22934-23278 PAXIP1_C PF15364.1 g8336.t1 - 0.027 14.4 0.2 0.03 14.2 0.1 1.1 1 0 0 1 1 1 0 PAXIP1-associated-protein-1 C term PTIP binding protein | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:214682-215123 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~214682-215123 DUF3678 PF12435.3 g115785.t1 - 6.7 6.3 9 0.69 9.5 2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3678) | Ref_seq=scaffold2663_contigs=2, transcript_loc=scaffold2663_contigs=2:35404-35688 Augustus predicted protein sequence Tobacco scaffold2663_contigs=2~35404-35688 IPP-2 PF04979.9 g2520.t1 - 0.084 13.1 0.4 0.13 12.4 0.3 1.4 1 0 0 1 1 1 0 Protein phosphatase inhibitor 2 (IPP-2) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:169995-170384 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~169995-170384 TGF_beta_GS PF08515.7 g33215.t1 - 0.19 11 1.8 0.31 10.4 1.2 1.3 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold828_contigs=2, transcript_loc=scaffold828_contigs=2:1-133 Augustus predicted protein sequence Tobacco scaffold828_contigs=2~1-133 Speriolin_N PF15058.1 g80273.t1 - 0.015 15.1 0.3 0.02 14.7 0.2 1.3 1 0 0 1 1 1 0 Speriolin N terminus | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:26175-26711 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~26175-26711 Anticodon_1 PF08264.8 g98372.t1 - 0.038 13.7 0.1 0.043 13.5 0.1 1.1 1 0 0 1 1 1 0 Anticodon-binding domain of tRNA | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:24788-25117 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~24788-25117 PIG-F PF06699.6 g43652.t1 - 0.045 13.6 0 0.061 13.2 0 1.1 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:292364-293417 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~292364-293417 DNA_ligase_ZBD PF03119.11 g40349.t1 - 0.032 13.9 0.3 0.23 11.1 0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:168555-168875 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~168555-168875 Gemini_AC4_5_2 PF08464.5 g75700.t1 - 0.092 12.4 0.2 0.73 9.6 0 2.2 2 0 0 2 2 2 0 Geminivirus AC4/5 conserved region | Ref_seq=scaffold1579_contigs=3, transcript_loc=scaffold1579_contigs=3:45057-45555 Augustus predicted protein sequence Tobacco scaffold1579_contigs=3~45057-45555 Crust_neurohorm PF01147.12 g26501.t1 - 1.2 8.4 5 2.9 7.2 3.5 1.6 1 1 0 1 1 1 0 Crustacean CHH/MIH/GIH neurohormone family | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:196057-196311 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~196057-196311 DUF678 PF05077.7 g27908.t1 - 0.27 11.2 1.8 0.48 10.4 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF678) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:558646-558957 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~558646-558957 DivIC PF04977.10 g13515.t1 - 0.01 15.3 4.9 0.01 15.3 3.4 2.8 1 1 2 3 3 3 0 Septum formation initiator | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:217908-218918 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~217908-218918 AA_permease PF00324.16 g88705.t1 - 0.13 10.5 0.2 0.17 10.1 0.1 1.1 1 0 0 1 1 1 0 Amino acid permease | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:211212-212514 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~211212-212514 TraE PF05309.6 g41718.t1 - 0.013 14.6 0 0.026 13.6 0 1.5 1 0 0 1 1 1 0 TraE protein | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:39973-40380 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~39973-40380 DUF521 PF04412.8 g65486.t1 - 0.1 11.1 0 0.23 9.9 0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF521) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:19005-19786 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~19005-19786 ATHILA PF03078.10 g83353.t1 - 0.000000024 33 0 0.000000046 32 0 1.4 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1790_contigs=2, transcript_loc=scaffold1790_contigs=2:5546-8643 Augustus predicted protein sequence Tobacco scaffold1790_contigs=2~5546-8643 RhaA PF06134.6 g55934.t1 - 0.05 12.5 0.3 0.048 12.5 0.2 1.1 1 0 0 1 1 1 0 L-rhamnose isomerase (RhaA) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:166683-168495 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~166683-168495 RVT_3 PF13456.1 g99557.t1 - 0.00000076 28.8 0 0.00000095 28.5 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2174_contigs=11, transcript_loc=scaffold2174_contigs=11:103692-103958 Augustus predicted protein sequence Tobacco scaffold2174_contigs=11~103692-103958 CAF-1_p150 PF11600.3 g104118.t1 - 0.00033 20.1 37.6 0.00039 19.8 26.1 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:39379-39840 Augustus predicted protein sequence Tobacco scaffold2332_contigs=1~39379-39840 DUF4543 PF15076.1 g94035.t1 - 0.04 13.9 0.6 0.056 13.4 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4543) | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:19830-21025 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~19830-21025 EMP24_GP25L PF01105.19 g4347.t1 - 0.089 12.4 0 0.11 12.2 0 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:61026-61247 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~61026-61247 Rbsn PF11464.3 g36169.t1 - 0.023 14.2 1.2 0.034 13.7 0.8 1.3 1 0 0 1 1 1 0 Rabenosyn Rab binding domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:420919-421173 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~420919-421173 Cupin_7 PF12973.2 g111275.t1 - 0.13 12.1 0 0.13 12 0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:15691-15894 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~15691-15894 DUF4307 PF14155.1 g2605.t1 - 0.024 14.3 0.4 0.037 13.8 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4307) | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:6879-7542 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~6879-7542 Apis_Csd PF11671.3 g81128.t1 - 0.2 11.4 2.7 0.25 11.1 1.9 1.2 1 0 0 1 1 1 0 Complementary sex determiner protein | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:267-949 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~267-949 PAT1 PF09770.4 g6080.t1 - 3.4 5.7 19.5 3.9 5.5 13.5 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:8475-10661 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~8475-10661 DUF1843 PF08898.5 g69983.t1 - 0.064 13.3 1.9 30 4.7 0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:32703-33337 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~32703-33337 DUF4219 PF13961.1 g96321.t1 - 0.00023 20.5 0.3 0.00037 19.8 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:114733-114951 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~114733-114951 FlxA PF14282.1 g124707.t1 - 0.0000032 27 6 0.0000068 25.9 0.6 2.2 2 0 0 2 2 2 1 FlxA-like protein | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:321898-325819 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~321898-325819 TPR_MLP1_2 PF07926.7 g55355.t1 - 0.034 13.8 1.1 0.05 13.3 0.8 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:191051-192613 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~191051-192613 Roughex PF06020.6 g5092.t1 - 0.09 11.4 0 0.09 11.4 0 1.1 1 0 0 1 1 1 0 Drosophila roughex protein | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:304280-304615 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~304280-304615 Adaptin_binding PF10199.4 g15573.t1 - 0.089 13 4.4 7.1 6.9 2.4 2.2 2 0 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:607028-607884 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~607028-607884 PIN PF01850.16 g22158.t1 - 0.053 13.8 0 0.056 13.7 0 1.1 1 0 0 1 1 1 0 PIN domain | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:54112-54549 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~54112-54549 ATHILA PF03078.10 g12007.t1 - 0.02 13.5 0 0.025 13.1 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:196237-196935 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~196237-196935 Kdo_hydroxy PF11004.3 g83414.t1 - 0.013 14.5 0.2 0.015 14.3 0.2 1.2 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:86957-87431 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~86957-87431 DUF1653 PF07866.6 g9568.t1 - 0.14 12.3 0.5 0.2 11.8 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1653) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:37987-38382 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~37987-38382 Gly-rich_Ago1 PF12764.2 g58134.t1 - 0.19 12.4 0.7 0.27 11.8 0.5 1.2 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:10852-11211 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~10852-11211 DUF3678 PF12435.3 g115149.t1 - 3 7.5 5.6 4.9 6.8 3.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3678) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:100084-100458 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~100084-100458 DUF4611 PF15387.1 g53719.t1 - 0.00078 19.5 0.3 0.00083 19.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4611) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:178801-179028 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~178801-179028 OTU PF02338.14 g109000.t1 - 0.046 14.3 0.1 0.064 13.8 0.1 1.2 1 0 0 1 1 1 0 OTU-like cysteine protease | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:140475-143602 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~140475-143602 Metallothio PF00131.15 g103804.t1 - 0.092 12.6 1.3 0.73 9.7 0 2.1 2 0 0 2 2 2 0 Metallothionein | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:92587-95399 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~92587-95399 PFO_beta_C PF12367.3 g31947.t1 - 0.097 12.6 0 0.12 12.3 0 1.1 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:33295-33519 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~33295-33519 Hus1 PF04005.7 g50907.t1 - 0.03 13.2 0 0.035 13 0 1 1 0 0 1 1 1 0 Hus1-like protein | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:29169-29564 Augustus predicted protein sequence Tobacco scaffold1147_contigs=3~29169-29564 Disaggr_assoc PF08480.5 g120245.t1 - 0.12 11.7 0.1 0.17 11.3 0 1.2 1 0 0 1 1 1 0 Disaggregatase related | Ref_seq=scaffold2721_contigs=4, transcript_loc=scaffold2721_contigs=4:112610-113529 Augustus predicted protein sequence Tobacco scaffold2721_contigs=4~112610-113529 DUF2890 PF11081.3 g109111.t1 - 8.8 6.3 6.6 4.1 7.4 1.7 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:29676-30438 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~29676-30438 PCI PF01399.22 g123810.t1 - 0.021 15.1 0.1 0.039 14.2 0.1 1.5 1 1 0 1 1 1 0 PCI domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:628685-629140 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~628685-629140 COP23 PF14218.1 g46304.t1 - 0.11 12 0 0.43 10.1 0 1.8 2 0 0 2 2 2 0 Circadian oscillating protein COP23 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:13000-13368 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~13000-13368 3D PF06725.6 g87707.t1 - 0.012 15.6 0 0.019 14.9 0 1.3 1 0 0 1 1 1 0 3D domain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:168440-168667 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~168440-168667 DUF2724 PF10893.3 g110002.t1 - 0.036 13.9 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:146999-147295 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~146999-147295 UPF0515 PF15135.1 g98877.t1 - 0.16 10.9 0.6 0.18 10.8 0.4 1 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:368904-370130 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~368904-370130 Serglycin PF04360.7 g79960.t1 - 0.3 10.7 2.4 0.27 10.9 1.7 1.2 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold1705_contigs=3, transcript_loc=scaffold1705_contigs=3:1-106 Augustus predicted protein sequence Tobacco scaffold1705_contigs=3~1-106 RPAP1_N PF08621.5 g76110.t1 - 0.12 12 0 0.16 11.5 0 1.2 1 0 0 1 1 1 0 RPAP1-like, N-terminal | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:234233-234520 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~234233-234520 gag_pre-integrs PF13976.1 g115312.t1 - 0.048 13.3 0.1 0.073 12.7 0 1.3 1 0 0 1 1 1 0 GAG-pre-integrase domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:66534-67219 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~66534-67219 Arg_repressor PF01316.16 g75705.t1 - 0.12 11.9 0.2 18 4.9 0 2.5 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:1-829 Augustus predicted protein sequence Tobacco scaffold1580_contigs=5~1-829 Voldacs PF03517.8 g97628.t1 - 0.56 10 7 4.5 7.1 0.1 2.2 2 0 0 2 2 2 0 Regulator of volume decrease after cellular swelling | Ref_seq=scaffold2140_contigs=3, transcript_loc=scaffold2140_contigs=3:54057-59544 Augustus predicted protein sequence Tobacco scaffold2140_contigs=3~54057-59544 NODP PF07684.7 g1735.t1 - 0.17 11.5 0.8 0.22 11.1 0.5 1.2 1 0 0 1 1 1 0 NOTCH protein | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:49366-49587 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~49366-49587 LXG PF04740.7 g58390.t1 - 0.0025 17.6 0.7 0.0031 17.3 0.5 1.1 1 0 0 1 1 1 1 LXG domain of WXG superfamily | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:372254-373933 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~372254-373933 AstE_AspA PF04952.9 g42117.t1 - 0.0052 15.7 0 0.0059 15.5 0 1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:52758-53036 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~52758-53036 Peptidase_M24 PF00557.19 g122500.t1 - 0.14 11.7 0 0.15 11.5 0 1.1 1 0 0 1 1 1 0 Metallopeptidase family M24 | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:136725-138691 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~136725-138691 Retrotrans_gag PF03732.12 g85041.t1 - 0.0049 16.9 0.3 0.0089 16 0.2 1.5 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:80114-80698 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~80114-80698 DUF2650 PF10853.3 g77915.t1 - 0.23 10.9 1.1 0.49 9.8 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2650) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:37998-38351 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~37998-38351 ATHILA PF03078.10 g54160.t1 - 0.0097 14.5 0 0.0097 14.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:44335-44643 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~44335-44643 NAM-associated PF14303.1 g10552.t1 - 0.000016 25.2 7.8 0.000021 24.9 5.4 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:256141-256680 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~256141-256680 Herpes_US12 PF05363.7 g6089.t1 - 0.021 15.3 0.1 0.048 14.1 0 1.5 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:23881-25044 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~23881-25044 SAB PF04382.8 g105375.t1 - 0.1 12.2 0 0.17 11.6 0 1.3 1 0 0 1 1 1 0 SAB domain | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:522689-522982 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~522689-522982 UBN2 PF14223.1 g28230.t1 - 0.000039 23.4 0 0.000052 23 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:184595-185202 Augustus predicted protein sequence Tobacco scaffold742_contigs=5~184595-185202 Pox_A_type_inc PF04508.7 g61979.t1 - 0.0071 16 0 0.0071 16 0 2.4 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:166109-166348 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~166109-166348 Tup_N PF08581.5 g36914.t1 - 0.0031 17.6 2.4 0.0031 17.6 1.6 1.8 2 0 0 2 2 2 1 Tup N-terminal | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:24606-25295 Augustus predicted protein sequence Tobacco scaffold904_contigs=3~24606-25295 Cuticle_1 PF08140.6 g111226.t1 - 0.16 11.8 0 0.28 11 0 1.4 1 0 0 1 1 1 0 Crustacean cuticle protein repeat | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:14134-14550 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~14134-14550 Adeno_PIX PF03955.9 g40942.t1 - 0.017 15.6 1.5 0.022 15.2 1.1 1.2 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:228013-228419 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~228013-228419 P12 PF12669.2 g73159.t1 - 0.032 14.4 0.3 0.034 14.3 0.2 1.2 1 0 0 1 1 1 0 Virus attachment protein p12 family | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:39391-39857 Augustus predicted protein sequence Tobacco scaffold1531_contigs=12~39391-39857 DmpG_comm PF07836.6 g61569.t1 - 0.028 13.8 0.8 0.24 10.8 0.5 2.1 1 1 0 1 1 1 0 DmpG-like communication domain | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:142108-142682 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~142108-142682 ESPR PF13018.1 g55551.t1 - 0.15 11.7 0.4 0.25 10.9 0.2 1.4 1 0 0 1 1 1 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:384320-384667 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~384320-384667 VARLMGL PF14383.1 g94011.t1 - 0.36 10 0.1 0.36 10 0.1 2.2 3 0 0 3 3 3 0 DUF761-associated sequence motif | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:414275-415314 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~414275-415314 CytochromB561_N PF09786.4 g123181.t1 - 1.8 6.9 6.8 2.2 6.6 4.7 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:27995-29200 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~27995-29200 Galanin PF01296.13 g38359.t1 - 1.2 9 4.5 6.3 6.7 0.4 2.6 2 1 0 2 2 2 0 Galanin | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:61880-62098 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~61880-62098 DUF442 PF04273.8 g39300.t1 - 0.12 12.2 0 0.22 11.3 0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) | Ref_seq=scaffold951_contigs=4, transcript_loc=scaffold951_contigs=4:29859-30560 Augustus predicted protein sequence Tobacco scaffold951_contigs=4~29859-30560 zinc_ribbon_2 PF13240.1 g52476.t1 - 0.1 12.1 0.9 0.17 11.3 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:329425-332833 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~329425-332833 IncA PF04156.9 g26844.t1 - 0.0097 15.5 0.9 0.015 14.9 0.6 1.2 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:393641-393985 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~393641-393985 DUF159 PF02586.9 g40278.t1 - 0.072 12.6 0.1 0.08 12.4 0 1.1 1 0 0 1 1 1 0 Uncharacterised ACR, COG2135 | Ref_seq=scaffold973_contigs=10, transcript_loc=scaffold973_contigs=10:33954-34580 Augustus predicted protein sequence Tobacco scaffold973_contigs=10~33954-34580 VIT1 PF01988.14 g17574.t1 - 0.058 12.8 0 0.061 12.7 0 1.1 1 0 0 1 1 1 0 VIT family | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:195242-195490 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~195242-195490 GCIP PF13324.1 g86094.t1 - 0.09 11.9 0 0.09 11.9 0 1.1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:166020-166310 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~166020-166310 CENP-O PF09496.5 g28229.t1 - 0.11 12.7 0.5 0.22 11.7 0.3 1.6 1 1 1 2 2 2 0 Cenp-O kinetochore centromere component | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:182979-183383 Augustus predicted protein sequence Tobacco scaffold742_contigs=5~182979-183383 Glyco_hydro_65C PF03633.10 g65619.t1 - 0.081 13 0.1 0.16 12 0.1 1.5 1 1 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:138831-139950 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~138831-139950 Integrin_alpha2 PF08441.7 g54832.t1 - 0.066 12 0 0.077 11.8 0 1 1 0 0 1 1 1 0 Integrin alpha | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:527646-528457 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~527646-528457 DUF640 PF04852.7 g102516.t1 - 0.000075 22.9 0.2 1.1 9.4 0 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF640) | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:88387-89766 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~88387-89766 Hpt PF01627.18 g3317.t1 - 0.069 13.1 0 0.091 12.7 0 1.2 1 0 0 1 1 1 0 Hpt domain | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:17153-17410 Augustus predicted protein sequence Tobacco scaffold230_contigs=2~17153-17410 Myosin_tail_1 PF01576.14 g83752.t1 - 0.0027 15.5 37.4 0.0035 15.1 25.9 1.1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:169650-170366 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~169650-170366 Chorion_2 PF03964.10 g58419.t1 - 0.54 10.8 3.1 0.89 10.1 2.1 1.3 1 1 0 1 1 1 0 Chorion family 2 | Ref_seq=scaffold1270_contigs=4, transcript_loc=scaffold1270_contigs=4:5210-5458 Augustus predicted protein sequence Tobacco scaffold1270_contigs=4~5210-5458 PDDEXK_4 PF14281.1 g42343.t1 - 0.11 12.3 0.2 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:84355-84687 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~84355-84687 TFIIF_alpha PF05793.7 g97685.t1 - 0.056 11.8 4.2 0.057 11.7 2.9 1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold2143_contigs=4, transcript_loc=scaffold2143_contigs=4:145965-146291 Augustus predicted protein sequence Tobacco scaffold2143_contigs=4~145965-146291 XRCC4 PF06632.7 g42334.t1 - 0.026 13.3 0.7 0.035 12.9 0.5 1.1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:70101-70814 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~70101-70814 MIP-T3 PF10243.4 g46766.t1 - 0.13 10.6 39.6 0.15 10.5 27.4 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:98473-99012 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~98473-99012 ATHILA PF03078.10 g123662.t1 - 0.021 13.4 0 0.022 13.3 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:243599-243874 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~243599-243874 CLU_N PF15044.1 g36480.t1 - 1.4 9.1 6.8 21 5.3 0.2 3.9 1 1 3 4 4 4 0 Mitochondrial function, CLU-N-term | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:71780-72803 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~71780-72803 Fzo_mitofusin PF04799.8 g115708.t1 - 0.018 14.4 1.9 0.018 14.4 1.3 1.8 1 1 1 2 2 2 0 fzo-like conserved region | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:98148-98498 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~98148-98498 Dmrt1 PF12374.3 g18721.t1 - 0.099 13 0 0.17 12.2 0 1.4 1 0 0 1 1 1 0 Double-sex mab3 related transcription factor 1 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:567175-567739 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~567175-567739 DUF740 PF05340.7 g95730.t1 - 0.079 11.3 0.3 0.088 11.1 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF740) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:188599-189084 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~188599-189084 GTF2I PF02946.9 g52808.t1 - 0.094 12.5 0 0.14 12 0 1.2 1 0 0 1 1 1 0 GTF2I-like repeat | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1147623-1148209 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1147623-1148209 ATHILA PF03078.10 g104671.t1 - 0.00015 20.4 0 0.00016 20.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:349737-350003 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~349737-350003 DUF977 PF06163.6 g101589.t1 - 0.021 14.5 0.4 0.031 13.9 0.3 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:370913-371740 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~370913-371740 Retrotrans_gag PF03732.12 g85656.t1 - 0.0052 16.8 1 0.037 14.1 0.5 1.9 1 1 1 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:284540-284890 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~284540-284890 OmdA PF13376.1 g123966.t1 - 0.096 12.3 0 1.3 8.7 0 2 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1009216-1009419 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1009216-1009419 zf-CCHC PF00098.18 g71214.t1 - 0.00057 19.6 0.4 0.00057 19.6 0.3 2.1 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:253735-254184 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~253735-254184 DUF3682 PF12446.3 g105559.t1 - 7.5 6.8 13.6 1.8 8.8 1.1 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3682) | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:1-2535 Augustus predicted protein sequence Tobacco scaffold2357_contigs=7~1-2535 SARG PF15385.1 g36042.t1 - 0.053 12.8 2 0.056 12.8 1.4 1 1 0 0 1 1 1 0 Specifically androgen-regulated gene protein | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:166425-166700 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~166425-166700 PhrC_PhrF PF11131.3 g107420.t1 - 0.85 9.2 3.2 0.38 10.3 0.4 1.8 2 0 0 2 2 2 0 Rap-phr extracellular signalling | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1362188-1362517 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1362188-1362517 DUF4207 PF13904.1 g53603.t1 - 0.012 15 17 0.013 14.8 11.8 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4207) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:191349-191741 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~191349-191741 RasGEF_N PF00618.15 g104344.t1 - 0.069 13.2 1.5 5 7.2 0.8 2.7 1 1 1 2 2 2 0 RasGEF N-terminal motif | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:585466-587863 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~585466-587863 CRC_subunit PF08624.5 g29228.t1 - 0.034 14 0 0.046 13.6 0 1.2 1 0 0 1 1 1 0 Chromatin remodelling complex Rsc7/Swp82 subunit | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:25687-26360 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~25687-26360 DUF599 PF04654.7 g31347.t1 - 0.0012 18 1.6 0.0017 17.5 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF599 | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:3165-3476 Augustus predicted protein sequence Tobacco scaffold794_contigs=4~3165-3476 Glyco_hydro_59 PF02057.10 g130298.t1 - 0.014 13.4 1.2 1.8 6.4 0.1 2 2 0 0 2 2 2 0 Glycosyl hydrolase family 59 | Ref_seq=scaffold3953_contigs=1, transcript_loc=scaffold3953_contigs=1:579-1322 Augustus predicted protein sequence Tobacco scaffold3953_contigs=1~579-1322 Rad60-SLD PF11976.3 g124208.t1 - 0.06 13 0 0.084 12.5 0 1.2 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1606107-1606391 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1606107-1606391 Carboxyl_trans PF01039.17 g41818.t1 - 0.033 12.5 2 0.03 12.6 1.4 1 1 0 0 1 1 1 0 Carboxyl transferase domain | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:46262-46739 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~46262-46739 A2M PF00207.17 g43121.t1 - 0.11 12 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:550508-550987 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~550508-550987 Fumerase_C PF05683.7 g34526.t1 - 0.12 11.5 0 0.14 11.2 0 1.1 1 0 0 1 1 1 0 Fumarase C-terminus | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:27499-28408 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~27499-28408 SUKH-4 PF14435.1 g41693.t1 - 0.053 13.2 0.6 0.063 12.9 0.4 1.1 1 0 0 1 1 1 0 SUKH-4 immunity protein | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:209039-209314 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~209039-209314 CENP_C_N PF15622.1 g30085.t1 - 0.015 14.5 1.8 0.015 14.5 1.3 1.6 1 1 1 2 2 2 0 Kinetochore assembly subunit CENP-C N-terminal | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:388450-389118 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~388450-389118 53-BP1_Tudor PF09038.5 g81682.t1 - 0.019 14.7 0 0.028 14.2 0 1.2 1 0 0 1 1 1 0 Tumour suppressor p53-binding protein-1 Tudor | Ref_seq=scaffold1734_contigs=1, transcript_loc=scaffold1734_contigs=1:1941-2291 Augustus predicted protein sequence Tobacco scaffold1734_contigs=1~1941-2291 NESP55 PF06390.7 g104640.t1 - 0.21 10.9 3.1 0.23 10.8 2.2 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:250324-250849 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~250324-250849 Ribosomal_S7 PF00177.16 g71195.t1 - 0.0086 15.6 0 0.01 15.4 0 1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:227796-228155 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~227796-228155 DUF1676 PF07898.8 g35441.t1 - 0.02 15.2 0.4 0.039 14.2 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:89302-90234 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~89302-90234 tRNA_bind_2 PF13725.1 g48964.t1 - 0.082 13 0 0.086 12.9 0 1.2 1 0 0 1 1 1 0 Possible tRNA binding domain | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:36747-37088 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~36747-37088 PsbP PF01789.11 g39306.t1 - 0.0037 16.7 0 0.0088 15.5 0 1.6 2 0 0 2 2 2 1 PsbP | Ref_seq=scaffold951_contigs=4, transcript_loc=scaffold951_contigs=4:35816-36931 Augustus predicted protein sequence Tobacco scaffold951_contigs=4~35816-36931 MAGSP PF03082.9 g24922.t1 - 0.13 11.6 0.1 0.16 11.2 0 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:19836-21521 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~19836-21521 BRO1 PF03097.13 g91411.t1 - 0.045 12.4 0 0.051 12.3 0 1 1 0 0 1 1 1 0 BRO1-like domain | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:121397-123286 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~121397-123286 DUF1985 PF09331.6 g44750.t1 - 0.0026 17.5 0 0.0036 17.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:115-1399 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~115-1399 GST_C_2 PF13410.1 g32535.t1 - 0.096 12.5 0 0.12 12.2 0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:316038-316322 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~316038-316322 DUF1702 PF08012.6 g64743.t1 - 0.077 11.5 0.1 0.11 11 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:53255-53707 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~53255-53707 MSP1_C PF07462.6 g7467.t1 - 0.028 12.8 1.6 0.033 12.5 1.1 1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:144463-144968 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~144463-144968 DUF2217 PF10265.4 g111481.t1 - 0.078 11.7 0.7 5.4 5.6 0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2217) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:600530-601783 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~600530-601783 TFIIA PF03153.8 g59866.t1 - 1.2 8.9 15 1.4 8.7 10.4 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:40644-41294 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~40644-41294 MOZART1 PF12554.3 g88780.t1 - 0.045 13.2 0 0.11 12 0 1.6 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:119237-120074 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~119237-120074 M60-like PF13402.1 g64166.t1 - 0.16 10.8 0 0.2 10.5 0 1.1 1 0 0 1 1 1 0 Peptidase M60-like family | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:53489-53896 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~53489-53896 MecA_N PF05223.6 g31562.t1 - 0.1 12.7 0.2 0.14 12.2 0.2 1.1 1 0 0 1 1 1 0 NTF2-like N-terminal transpeptidase domain | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:41735-42148 Augustus predicted protein sequence Tobacco scaffold797_contigs=11~41735-42148 DUF4225 PF13988.1 g32867.t1 - 0.17 11.3 0.2 0.3 10.5 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:38202-40570 Augustus predicted protein sequence Tobacco scaffold823_contigs=8~38202-40570 DUF3456 PF11938.3 g116217.t1 - 2.2 8.2 9.9 0.15 12 0.9 2.1 1 1 1 2 2 2 0 TLR4 regulator and MIR-interacting MSAP | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:186733-187729 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~186733-187729 Metal_resist PF13801.1 g121281.t1 - 9.2 6.2 12.7 1 9.3 5.4 1.8 1 1 0 2 2 2 0 Heavy-metal resistance | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:592569-592904 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~592569-592904 B2-adapt-app_C PF09066.5 g76158.t1 - 0.012 15.4 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Beta2-adaptin appendage, C-terminal sub-domain | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:121148-122070 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~121148-122070 ATHILA PF03078.10 g12006.t1 - 0.00021 20 0 0.00029 19.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:195737-196108 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~195737-196108 Oligomerisation PF02410.10 g111785.t1 - 0.086 12.8 6.1 0.93 9.5 0.1 3.1 1 1 2 3 3 3 0 Oligomerisation domain | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:217763-219404 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~217763-219404 Drf_GBD PF06371.8 g93895.t1 - 0.087 12.1 0.1 0.087 12.1 0.1 1 1 0 0 1 1 1 0 Diaphanous GTPase-binding Domain | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:73655-73906 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~73655-73906 Cut8_N PF14482.1 g118763.t1 - 0.017 15 1.1 0.04 13.9 0.7 1.8 1 1 0 1 1 1 0 Cut8 proteasome-binding domain | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:40930-41217 Augustus predicted protein sequence Tobacco scaffold2706_contigs=4~40930-41217 RNA_POL_M_15KD PF02150.11 g51011.t1 - 0.12 12 1.2 0.19 11.4 0.1 1.8 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:88536-88898 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~88536-88898 IFP_35_N PF07334.8 g55014.t1 - 0.14 12.1 0.1 0.25 11.3 0.1 1.4 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:359789-360613 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~359789-360613 UBN2 PF14223.1 g7824.t1 - 0.0000014 28.1 0.1 0.026 14.2 0.1 2.2 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:22894-23348 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~22894-23348 DNA_pol_B_exo1 PF03104.14 g48959.t1 - 0.067 12 0 0.088 11.6 0 1.1 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:32920-33372 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~32920-33372 CAP_N PF01213.14 g11217.t1 - 1.3 8.1 5.1 1.6 7.9 3.6 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:353143-353487 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~353143-353487 UDG PF03167.14 g75273.t1 - 0.093 12.1 0 0.12 11.8 0 1.1 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:58346-59292 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~58346-59292 FH2 PF02181.18 g100874.t1 - 0.034 13 0 0.045 12.6 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:233777-236517 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~233777-236517 IKKbetaNEMObind PF12179.3 g71915.t1 - 0.12 12.2 0.4 11 5.9 0.1 2.3 2 0 0 2 2 2 0 I-kappa-kinase-beta NEMO binding domain | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:98957-99283 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~98957-99283 TetR_C_2 PF08361.6 g27291.t1 - 0.11 12.3 0.1 0.14 12 0.1 1.2 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region | Ref_seq=scaffold722_contigs=14, transcript_loc=scaffold722_contigs=14:647492-647812 Augustus predicted protein sequence Tobacco scaffold722_contigs=14~647492-647812 Retrotrans_gag PF03732.12 g83219.t1 - 0.1 12.6 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:370820-371161 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~370820-371161 Tropomyosin PF00261.15 g1373.t1 - 0.0038 16.3 1.4 0.0038 16.3 1 1.7 1 1 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold181_contigs=1, transcript_loc=scaffold181_contigs=1:16486-17783 Augustus predicted protein sequence Tobacco scaffold181_contigs=1~16486-17783 DMPK_coil PF08826.5 g80301.t1 - 0.37 10.7 7.5 4.2 7.3 2.7 2.4 2 0 0 2 2 2 0 DMPK coiled coil domain like | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:114864-116042 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~114864-116042 TGF_beta_GS PF08515.7 g2754.t1 - 0.2 11 1.8 0.34 10.2 1.2 1.4 1 0 0 1 1 1 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:1-143 Augustus predicted protein sequence Tobacco scaffold218_contigs=4~1-143 MYT1 PF08474.6 g123905.t1 - 0.017 14.5 1.7 0.087 12.2 0.5 2.1 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:884592-885775 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~884592-885775 MHYT PF03707.11 g111668.t1 - 0.062 13.4 0.4 0.11 12.5 0.3 1.5 1 0 0 1 1 1 0 Bacterial signalling protein N terminal repeat | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:178851-180166 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~178851-180166 Mu-like_Pro PF10123.4 g101923.t1 - 0.078 12.4 3.9 0.093 12.1 2.7 1 1 0 0 1 1 1 0 Mu-like prophage I protein | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:76451-76804 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~76451-76804 RP-C_C PF11800.3 g52403.t1 - 0.077 12.6 0.1 0.09 12.4 0.1 1 1 0 0 1 1 1 0 Replication protein C C-terminal region | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:175267-175551 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~175267-175551 LBR_tudor PF09465.5 g120808.t1 - 0.031 13.9 0.1 0.057 13 0.1 1.4 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:219047-219435 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~219047-219435 DUF2772 PF10970.3 g70845.t1 - 0.041 13.9 0 0.043 13.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2772) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:273680-273901 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~273680-273901 BHD_3 PF10405.4 g41012.t1 - 0.14 11.9 0 0.55 9.9 0 1.9 2 1 0 2 2 2 0 Rad4 beta-hairpin domain 3 | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:402812-403194 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~402812-403194 Transposase_24 PF03004.9 g1107.t1 - 0.0000017 27.9 1.4 0.0000024 27.5 0.9 1.3 1 1 0 1 1 1 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:356609-357743 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~356609-357743 GrpE PF01025.14 g112325.t1 - 0.11 12 0.8 0.13 11.7 0.6 1.1 1 0 0 1 1 1 0 GrpE | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:90842-93786 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~90842-93786 Tropomyosin PF00261.15 g37823.t1 - 0.0048 16 2.3 0.0048 16 1.6 1.3 1 1 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:81968-82866 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~81968-82866 Pico_P1A PF02226.11 g83987.t1 - 0.084 12.6 0.1 0.26 11 0.1 1.9 1 1 0 1 1 1 0 Picornavirus coat protein (VP4) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:267570-268181 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~267570-268181 DUF2509 PF10713.4 g111876.t1 - 0.061 13 0 0.13 12 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2509) | Ref_seq=scaffold2596_contigs=6, transcript_loc=scaffold2596_contigs=6:60415-61475 Augustus predicted protein sequence Tobacco scaffold2596_contigs=6~60415-61475 DHC_N1 PF08385.7 g3210.t1 - 0.04 12.3 0 0.079 11.3 0 1.5 2 0 0 2 2 2 0 Dynein heavy chain, N-terminal region 1 | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:20127-22316 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~20127-22316 MR_MLE PF01188.16 g116697.t1 - 0.044 14.3 0 0.089 13.3 0 1.5 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:135717-136031 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~135717-136031 TMEM107 PF14995.1 g12212.t1 - 0.081 13 0 0.11 12.6 0 1.2 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:343746-345650 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~343746-345650 Lar_restr_allev PF14354.1 g38183.t1 - 0.11 12.7 0.1 0.18 12.1 0 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:71665-75109 Augustus predicted protein sequence Tobacco scaffold931_contigs=12~71665-75109 Periviscerokin PF08259.6 g77482.t1 - 0.43 10.7 2.4 42 4.7 0.1 3 2 0 0 2 2 2 0 Periviscerokinin family | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:159832-160354 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~159832-160354 Flu_M1 PF00598.14 g29577.t1 - 0.12 11.7 0 0.22 10.8 0 1.5 1 0 0 1 1 1 0 Influenza Matrix protein (M1) | Ref_seq=scaffold762_contigs=4, transcript_loc=scaffold762_contigs=4:16447-16892 Augustus predicted protein sequence Tobacco scaffold762_contigs=4~16447-16892 ACC_epsilon PF13822.1 g33217.t1 - 0.17 12.2 3.1 0.24 11.7 2.2 1.4 1 1 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit | Ref_seq=scaffold828_contigs=2, transcript_loc=scaffold828_contigs=2:10910-11321 Augustus predicted protein sequence Tobacco scaffold828_contigs=2~10910-11321 IL11 PF07400.6 g116298.t1 - 0.049 13.1 0.3 0.059 12.9 0.1 1.3 1 1 0 1 1 1 0 Interleukin 11 | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:42079-42723 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~42079-42723 Vault PF01505.13 g78462.t1 - 0.1 12.6 0.6 12 6 0 2.2 2 0 0 2 2 2 0 Major Vault Protein repeat | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:99135-99888 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~99135-99888 DUF1371 PF07115.6 g97273.t1 - 0.098 12.8 0.1 0.12 12.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1371) | Ref_seq=scaffold2131_contigs=1, transcript_loc=scaffold2131_contigs=1:94734-95206 Augustus predicted protein sequence Tobacco scaffold2131_contigs=1~94734-95206 Matrilin_ccoil PF10393.4 g17839.t1 - 0.014 14.7 0 0.024 14 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold536_contigs=1, transcript_loc=scaffold536_contigs=1:650-1053 Augustus predicted protein sequence Tobacco scaffold536_contigs=1~650-1053 zf-RVT PF13966.1 g59625.t1 - 0.0047 17.2 11.8 0.022 15 1.6 2.3 1 1 1 2 2 2 2 zinc-binding in reverse transcriptase | Ref_seq=scaffold1296_contigs=2, transcript_loc=scaffold1296_contigs=2:6148-7252 Augustus predicted protein sequence Tobacco scaffold1296_contigs=2~6148-7252 PulG PF11773.3 g77002.t1 - 0.047 13.4 0 1 9.1 0 2.1 2 0 0 2 2 2 0 Type II secretory pathway pseudopilin | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:54736-55185 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~54736-55185 T_Ag_DNA_bind PF02217.11 g76743.t1 - 0.19 12.1 0.9 0.28 11.6 0.6 1.2 1 0 0 1 1 1 0 Origin of replication binding protein | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:119745-120092 Augustus predicted protein sequence Tobacco scaffold1619_contigs=7~119745-120092 DUF1347 PF07079.6 g87022.t1 - 0.037 12.2 0 0.042 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:588475-588909 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~588475-588909 Prok-RING_2 PF14445.1 g83719.t1 - 0.1 12.5 0.2 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:108984-109271 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~108984-109271 zf-CCHC PF00098.18 g98859.t1 - 0.68 9.9 5.1 0.29 11.1 1 2.1 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:310909-311290 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~310909-311290 DUF1331 PF07048.6 g6705.t1 - 0.098 12.1 1.2 0.2 11.1 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1331) | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:3012-3447 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~3012-3447 IFT43 PF15305.1 g23904.t1 - 0.064 13.2 1.8 0.12 12.4 1.3 1.6 1 1 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold655_contigs=15, transcript_loc=scaffold655_contigs=15:16273-16669 Augustus predicted protein sequence Tobacco scaffold655_contigs=15~16273-16669 F-box PF00646.28 g57351.t1 - 0.077 12.6 1.6 0.72 9.5 0.1 2.7 3 0 0 3 3 3 0 F-box domain | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:99158-100049 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~99158-100049 IFP_35_N PF07334.8 g55023.t1 - 0.032 14.2 0.2 0.032 14.2 0.1 1.9 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:372481-373549 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~372481-373549 ArabFuran-catal PF09206.6 g92401.t1 - 0.11 11.3 0 0.12 11.2 0 1 1 0 0 1 1 1 0 Alpha-L-arabinofuranosidase B, catalytic | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:512556-513736 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~512556-513736 PBP1_TM PF14812.1 g16727.t1 - 7.4 6.9 6.8 4.8 7.5 3.8 1.5 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:222033-222470 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~222033-222470 NDUF_B4 PF07225.7 g69216.t1 - 0.02 14.6 0.2 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:692392-693288 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~692392-693288 TIP41 PF04176.8 g18410.t1 - 0.041 13.1 0.5 0.047 12.9 0.3 1.2 1 0 0 1 1 1 0 TIP41-like family | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:41394-42071 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~41394-42071 DUF1719 PF08224.6 g46093.t1 - 0.011 14.8 0.2 0.012 14.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:59514-59714 Augustus predicted protein sequence Tobacco scaffold1055_contigs=9~59514-59714 Toxin_56 PF15534.1 g117706.t1 - 0.05 14 3.1 0.06 13.8 1.9 1.4 1 1 0 1 1 1 0 Putative toxin 56 | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:58896-59916 Augustus predicted protein sequence Tobacco scaffold2693_contigs=8~58896-59916 DBD_Tnp_Mut PF03108.10 g115691.t1 - 0.000013 24.6 0.1 0.000026 23.7 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:56292-56645 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~56292-56645 IBV_3A PF03617.8 g123242.t1 - 0.082 12.6 0.3 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:165667-165957 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~165667-165957 Vicilin_N PF04702.7 g78772.t1 - 0.18 11.3 0.6 0.21 11.1 0.4 1.1 1 0 0 1 1 1 0 Vicilin N terminal region | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:123839-124138 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~123839-124138 DUF1589 PF07628.6 g91261.t1 - 0.1 12.5 0.2 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1589) | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:162116-162436 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~162116-162436 CFC PF09443.5 g77460.t1 - 0.082 12.5 1.1 0.26 10.9 0.8 1.9 2 0 0 2 2 2 0 Cripto_Frl-1_Cryptic (CFC) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:124152-124530 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~124152-124530 DUF1537 PF07005.6 g55994.t1 - 0.061 12.9 0 0.081 12.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF1537 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:318853-319497 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~318853-319497 Trypan_PARP PF05887.6 g22764.t1 - 1.3 8.8 24.7 3.3 7.5 3.5 2.3 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:282894-284150 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~282894-284150 VGCC_beta4Aa_N PF12052.3 g25395.t1 - 0.024 14.5 0.4 0.032 14 0.3 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:197213-197632 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~197213-197632 SDP_N PF12278.3 g31287.t1 - 0.069 12.7 1.5 0.13 11.9 1.1 1.4 1 0 0 1 1 1 0 Sex determination protein N terminal | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:24418-29589 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~24418-29589 WCOR413 PF05562.6 g111178.t1 - 0.00081 18.9 0 0.00095 18.7 0 1.1 1 0 0 1 1 1 1 Cold acclimation protein WCOR413 | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:33002-34388 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~33002-34388 STb_secrete PF09075.5 g114092.t1 - 1.2 8.9 4.4 15 5.5 0.4 2.4 2 0 0 2 2 2 0 Heat-stable enterotoxin B, secretory | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:241707-243183 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~241707-243183 PAN_4 PF14295.1 g121838.t1 - 0.12 12.1 0.9 0.18 11.4 0.6 1.3 1 0 0 1 1 1 0 PAN domain | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:519385-520655 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~519385-520655 VGCC_beta4Aa_N PF12052.3 g98994.t1 - 0.0092 15.8 0.2 0.011 15.5 0.1 1.3 1 1 0 1 1 1 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:166028-166300 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~166028-166300 DUF4227 PF14004.1 g126421.t1 - 5.3 6.9 6 31 4.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) | Ref_seq=scaffold2794_contigs=1, transcript_loc=scaffold2794_contigs=1:69217-71596 Augustus predicted protein sequence Tobacco scaffold2794_contigs=1~69217-71596 Flu_PB1 PF00602.12 g56809.t1 - 0.033 11.9 0 0.037 11.7 0 1 1 0 0 1 1 1 0 Influenza RNA-dependent RNA polymerase subunit PB1 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:937555-937884 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~937555-937884 YdjO PF14169.1 g93739.t1 - 0.00071 18.9 0.1 0.0019 17.6 0 1.7 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:488972-490141 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~488972-490141 Spc24 PF08286.6 g74655.t1 - 0.063 12.9 0.3 0.084 12.5 0.2 1.3 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:17663-19981 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~17663-19981 Glyco_hydro_17 PF00332.13 g26524.t1 - 0.11 11.5 0 0.12 11.3 0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 17 | Ref_seq=scaffold716_contigs=3, transcript_loc=scaffold716_contigs=3:25222-25455 Augustus predicted protein sequence Tobacco scaffold716_contigs=3~25222-25455 Calpain_inhib PF00748.14 g42438.t1 - 5.5 7.3 8.1 0.49 10.7 2.1 1.7 2 0 0 2 2 2 0 Calpain inhibitor | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:45662-46132 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~45662-46132 MEF2_binding PF09047.5 g120442.t1 - 0.0023 17.5 0.1 0.0048 16.5 0.1 1.5 1 0 0 1 1 1 1 MEF2 binding | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:238003-238311 Augustus predicted protein sequence Tobacco scaffold2724_contigs=11~238003-238311 S1 PF00575.18 g90911.t1 - 0.0078 16.2 0.1 0.01 15.8 0.1 1.3 1 0 0 1 1 1 1 S1 RNA binding domain | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:123065-123292 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~123065-123292 NPV_P10 PF05531.7 g68471.t1 - 0.076 13.2 0.7 0.12 12.5 0.5 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:185894-187024 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~185894-187024 Sorting_nexin PF03700.8 g71887.t1 - 0.076 13.1 0.5 0.1 12.7 0.4 1.2 1 0 0 1 1 1 0 Sorting nexin, N-terminal domain | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:24828-25169 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~24828-25169 TPR_MLP1_2 PF07926.7 g34245.t1 - 0.0067 16.1 5.1 0.011 15.4 3.5 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:92833-93657 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~92833-93657 ATHILA PF03078.10 g85126.t1 - 0.000000034 32.5 0 0.000000036 32.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:282644-282955 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~282644-282955 DBD_Tnp_Mut PF03108.10 g22972.t1 - 0.00000046 29.3 0.4 0.00000059 28.9 0.3 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:71637-71945 Augustus predicted protein sequence Tobacco scaffold631_contigs=3~71637-71945 DUF1408 PF07193.6 g97032.t1 - 0.12 11.9 0.1 0.3 10.6 0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1408) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:360439-360783 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~360439-360783 Dsh_C PF12316.3 g67811.t1 - 0.017 15.2 6.8 0.02 14.9 4.7 1.1 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:374737-375338 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~374737-375338 RVT_3 PF13456.1 g58481.t1 - 0.0059 16.3 0.5 4.8 7 0 2.5 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:124847-125374 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~124847-125374 zf-CCHC_4 PF14392.1 g8413.t1 - 0.0018 17.8 1 0.0042 16.7 0.7 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:41836-42560 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~41836-42560 FAR1 PF03101.10 g129274.t1 - 0.00054 20.4 0.1 0.00067 20.1 0.1 1.1 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold2934_contigs=1, transcript_loc=scaffold2934_contigs=1:19159-19368 Augustus predicted protein sequence Tobacco scaffold2934_contigs=1~19159-19368 NUT_C PF12882.2 g78559.t1 - 0.0042 16.7 0.2 0.52 9.8 0 2.2 2 0 0 2 2 2 2 NUT protein C terminal | Ref_seq=scaffold1658_contigs=5, transcript_loc=scaffold1658_contigs=5:5805-11771 Augustus predicted protein sequence Tobacco scaffold1658_contigs=5~5805-11771 Chromo PF00385.19 g69318.t1 - 0.000000026 33.3 0.2 0.000000031 33.1 0.2 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:110094-110618 Augustus predicted protein sequence Tobacco scaffold1485_contigs=2~110094-110618 DUF3521 PF12035.3 g79918.t1 - 0.018 14.9 0 0.77 9.6 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3521) | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:206793-207062 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~206793-207062 DUF148 PF02520.12 g9463.t1 - 0.00067 19.4 3.4 0.0013 18.5 2.4 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF148 | Ref_seq=scaffold366_contigs=3, transcript_loc=scaffold366_contigs=3:79372-79845 Augustus predicted protein sequence Tobacco scaffold366_contigs=3~79372-79845 Imm2 PF14426.1 g3640.t1 - 0.16 11.9 0.5 0.57 10.2 0 1.9 2 0 0 2 2 2 0 Immunity protein Imm2 | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:171756-171962 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~171756-171962 Med25_SD1 PF11235.3 g58802.t1 - 0.17 12.1 5.7 0.27 11.5 3.7 1.6 1 1 0 1 1 1 0 Mediator complex subunit 25 synapsin 1 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:14818-15326 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~14818-15326 DUF3710 PF12502.3 g123865.t1 - 1.1 8.4 4.5 3 7.1 2.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3710) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:776004-776519 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~776004-776519 GTPase_Cys_C PF12631.2 g108853.t1 - 0.091 13.1 0.2 0.18 12.2 0.1 1.7 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:361719-362105 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~361719-362105 BAGE PF08180.6 g60729.t1 - 0.006 16.3 1.8 2.8 7.7 0.1 2.4 2 0 0 2 2 2 2 B melanoma antigen family | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:48746-50748 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~48746-50748 TFIIA PF03153.8 g125970.t1 - 0.062 13.1 5.8 0.076 12.9 4 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:103523-104143 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~103523-104143 Herpes_BLRF2 PF05812.7 g63674.t1 - 0.1 12.4 0.1 0.13 12 0 1.2 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:31243-31536 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~31243-31536 Vsr PF03852.10 g11389.t1 - 0.04 13.5 0 0.066 12.8 0 1.4 1 0 0 1 1 1 0 DNA mismatch endonuclease Vsr | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:161162-161524 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~161162-161524 bZIP_2 PF07716.10 g31405.t1 - 0.00025 20.8 4.5 0.00025 20.8 3.1 2.6 3 0 0 3 3 3 1 Basic region leucine zipper | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:24176-24490 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~24176-24490 CENP-H PF05837.7 g75183.t1 - 0.17 12.1 2.4 0.19 11.8 1.7 1.2 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:116664-116915 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~116664-116915 HALZ PF02183.13 g126064.t1 - 0.0066 16.1 0.2 0.0066 16.1 0.1 2.5 2 1 0 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:76277-76618 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~76277-76618 Rsc14 PF08586.5 g43149.t1 - 0.13 12.7 1.5 0.23 11.9 1.1 1.3 1 0 0 1 1 1 0 RSC complex, Rsc14/Ldb7 subunit | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:1730-3609 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~1730-3609 Sec2p PF06428.6 g70596.t1 - 0.0051 16.6 0 0.0085 15.9 0 1.3 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:574758-575583 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~574758-575583 PRCC PF10253.4 g86242.t1 - 0.019 15.7 1.1 0.031 14.9 0.3 1.6 1 1 1 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:302597-302887 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~302597-302887 Nucleoplasmin PF03066.10 g24346.t1 - 0.13 11.7 17.1 0.15 11.5 11.8 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:13048-13641 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~13048-13641 Retrotrans_gag PF03732.12 g95206.t1 - 0.00013 21.9 0.1 0.00014 21.8 0 1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:329608-329823 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~329608-329823 Anticodon_1 PF08264.8 g42959.t1 - 0.0084 15.8 0.8 0.012 15.3 0.5 1.1 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:26828-27589 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~26828-27589 ATHILA PF03078.10 g49927.t1 - 0.0000023 26.4 0 0.0000023 26.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:385042-385428 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~385042-385428 YL1 PF05764.8 g2632.t1 - 0.026 14.1 2.6 0.03 13.9 1.8 1.1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:70072-70754 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~70072-70754 DUF3678 PF12435.3 g14111.t1 - 0.26 10.8 8.6 0.17 11.4 3.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3678) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:75255-75897 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~75255-75897 DUF3606 PF12244.3 g55748.t1 - 0.12 11.9 0.5 0.15 11.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:14534-14810 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~14534-14810 Transposase_28 PF04195.7 g123184.t1 - 0.0021 17.3 0.1 0.061 12.6 0 2.2 2 0 0 2 2 2 2 Putative gypsy type transposon | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:34657-35266 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~34657-35266 DBD_Tnp_Mut PF03108.10 g26463.t1 - 6.5E-009 35.2 0.6 8.6E-009 34.8 0.4 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:124039-124359 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~124039-124359 zf-CCHC PF00098.18 g72939.t1 - 0.000061 22.7 0.7 0.0001 22 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:62504-63578 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~62504-63578 DUF3219 PF11514.3 g86624.t1 - 0.0019 18 0.1 0.14 12 0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3219) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:43025-44204 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~43025-44204 Vps5 PF09325.5 g13470.t1 - 0.0055 15.9 0.5 0.006 15.8 0.4 1 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:106579-106926 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~106579-106926 DUF3359 PF11839.3 g79131.t1 - 0.077 13.3 0.7 0.13 12.5 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) | Ref_seq=scaffold1688_contigs=3, transcript_loc=scaffold1688_contigs=3:24547-24997 Augustus predicted protein sequence Tobacco scaffold1688_contigs=3~24547-24997 zf-CCHC PF00098.18 g58861.t1 - 0.0014 18.4 2.3 0.003 17.3 1.6 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:96613-97674 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~96613-97674 DUF2919 PF11143.3 g88729.t1 - 0.00079 19.2 0.2 0.81 9.5 0 2 1 1 1 2 2 2 2 Protein of unknown function (DUF2919) | Ref_seq=scaffold1934_contigs=9, transcript_loc=scaffold1934_contigs=9:18362-18857 Augustus predicted protein sequence Tobacco scaffold1934_contigs=9~18362-18857 DUF3709 PF12493.3 g13433.t1 - 0.32 10.7 0.2 0.32 10.7 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3709) | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:6028-6240 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~6028-6240 Filament PF00038.16 g103811.t1 - 0.048 13.1 6.6 0.064 12.7 4.6 1.2 1 0 0 1 1 1 0 Intermediate filament protein | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:108456-109741 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~108456-109741 DUF4381 PF14316.1 g13692.t1 - 0.055 13.5 1 0.084 12.9 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:344223-344819 Augustus predicted protein sequence Tobacco scaffold451_contigs=13~344223-344819 Toxin_28 PF08115.6 g112236.t1 - 0.1 12.2 0 0.22 11.2 0 1.5 2 0 0 2 2 2 0 SFI toxin family | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:47523-48146 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~47523-48146 ChW PF07538.6 g40309.t1 - 0.073 12.6 1.2 0.35 10.4 0.1 2.3 2 0 0 2 2 2 0 Clostridial hydrophobic W | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:98186-98869 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~98186-98869 AAA_7 PF12775.2 g80877.t1 - 0.16 10.9 0.1 0.2 10.6 0.1 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:222234-222671 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~222234-222671 rpo132 PF12415.3 g84826.t1 - 0.063 12.2 0 0.12 11.2 0 1.4 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:23290-25185 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~23290-25185 HflK_N PF12221.3 g67126.t1 - 0.15 11.8 0.4 0.29 10.9 0.3 1.4 1 0 0 1 1 1 0 Bacterial membrane protein N terminal | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:566493-568151 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~566493-568151 DUF1724 PF08350.5 g112139.t1 - 0.0099 15.3 0 11 5.6 0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:59240-61864 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~59240-61864 DUF1415 PF07209.7 g46561.t1 - 0.032 13.9 0 0.034 13.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1415) | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:113566-113811 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~113566-113811 DUF329 PF03884.9 g9438.t1 - 0.12 11.9 0.4 0.22 11.1 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold365_contigs=1, transcript_loc=scaffold365_contigs=1:18036-18371 Augustus predicted protein sequence Tobacco scaffold365_contigs=1~18036-18371 YjgP_YjgQ PF03739.9 g109866.t1 - 0.055 12.2 0.3 0.063 12 0.2 1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:363142-363879 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~363142-363879 GBV-C_env PF12786.2 g84534.t1 - 0.11 10.9 0.1 0.11 10.8 0.1 1 1 0 0 1 1 1 0 GB virus C genotype envelope | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:127080-127328 Augustus predicted protein sequence Tobacco scaffold1823_contigs=11~127080-127328 Spt4 PF06093.8 g127397.t1 - 0.05 13.4 0 0.061 13.2 0 1.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger | Ref_seq=scaffold2824_contigs=1, transcript_loc=scaffold2824_contigs=1:1181-1390 Augustus predicted protein sequence Tobacco scaffold2824_contigs=1~1181-1390 HicB PF05534.7 g63651.t1 - 0.1 12.1 0.3 0.5 9.9 0 2 2 0 0 2 2 2 0 HicB family | Ref_seq=scaffold1379_contigs=3, transcript_loc=scaffold1379_contigs=3:30323-30583 Augustus predicted protein sequence Tobacco scaffold1379_contigs=3~30323-30583 Npa1 PF11707.3 g13578.t1 - 0.042 12.8 0.1 0.049 12.6 0.1 1.1 1 0 0 1 1 1 0 Ribosome 60S biogenesis N-terminal | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:122105-124405 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~122105-124405 Retrotrans_gag PF03732.12 g34672.t1 - 0.0027 17.7 0.3 0.0046 17 0.2 1.5 1 1 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:60915-61222 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~60915-61222 zinc_ribbon_4 PF13717.1 g39797.t1 - 0.032 13.9 0.1 1.5 8.5 0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:243220-243444 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~243220-243444 Ribosomal_S14 PF00253.16 g8464.t1 - 0.11 11.9 1 0.26 10.6 0.2 2 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:139542-139784 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~139542-139784 ExoD PF06055.7 g91229.t1 - 0.064 12.3 0 0.077 12 0 1.1 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:43719-45341 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~43719-45341 OAD_gamma PF04277.8 g122094.t1 - 0.8 10.1 4.2 4.3 7.7 1 2.6 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:213474-215967 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~213474-215967 DUF2360 PF10152.4 g88012.t1 - 3.5 7.9 6 1.9 8.7 2.8 1.5 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:216519-217637 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~216519-217637 Mlf1IP PF10248.4 g81628.t1 - 0.000072 22.4 0.1 0.29 10.7 0 2.1 1 1 1 2 2 2 2 Myelodysplasia-myeloid leukemia factor 1-interacting protein | Ref_seq=scaffold1731_contigs=1, transcript_loc=scaffold1731_contigs=1:23713-24634 Augustus predicted protein sequence Tobacco scaffold1731_contigs=1~23713-24634 DUF1866 PF08952.6 g104773.t1 - 0.072 12.6 0 0.077 12.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1866) | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:221843-222437 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~221843-222437 SPAM PF02090.10 g20712.t1 - 0.05 13.6 3.2 0.056 13.4 2.2 1.1 1 0 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:107713-108045 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~107713-108045 EHN PF06441.7 g44000.t1 - 0.0016 18.3 0 0.71 9.8 0 2.1 1 1 1 2 2 2 2 Epoxide hydrolase N terminus | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:140277-142233 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~140277-142233 NPCBM_assoc PF10633.4 g17313.t1 - 0.017 15.1 0 0.023 14.7 0 1.2 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:128553-129131 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~128553-129131 Colicin_Ia PF11504.3 g48305.t1 - 0.11 12.3 0 0.34 10.8 0 1.8 1 0 0 1 1 1 0 Colicin Ia | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:263879-266347 Augustus predicted protein sequence Tobacco scaffold1107_contigs=16~263879-266347 Hyd_WA PF06462.7 g128193.t1 - 0.0096 15.5 0.1 6.8 6.4 0 3.1 3 0 0 3 3 3 2 Propeller | Ref_seq=scaffold2854_contigs=1, transcript_loc=scaffold2854_contigs=1:1187-1477 Augustus predicted protein sequence Tobacco scaffold2854_contigs=1~1187-1477 TMEM171 PF15471.1 g12461.t1 - 0.098 11.4 1.1 0.11 11.2 0.8 1 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:131618-132489 Augustus predicted protein sequence Tobacco scaffold427_contigs=11~131618-132489 CDC45 PF02724.9 g109886.t1 - 0.021 12.9 13.4 0.027 12.5 9.3 1.2 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:413336-414457 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~413336-414457 RVT_3 PF13456.1 g65854.t1 - 0.00014 21.5 0.3 0.00026 20.7 0.2 1.5 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:262895-263137 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~262895-263137 Amidase_2 PF01510.20 g77708.t1 - 0.055 13.5 0.2 0.063 13.3 0.1 1 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:181204-181482 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~181204-181482 FH2 PF02181.18 g64173.t1 - 0.0044 15.9 0.2 0.0055 15.6 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:63235-63681 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~63235-63681 HATPase_c_3 PF13589.1 g99376.t1 - 0.12 11.9 0.2 0.33 10.5 0.1 1.7 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:360851-361183 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~360851-361183 Retrotrans_gag PF03732.12 g101260.t1 - 0.024 14.6 0 0.025 14.6 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:116063-116290 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~116063-116290 Nucleotid_trans PF03407.11 g3987.t1 - 0.056 13.2 0 0.056 13.2 0 1 1 0 0 1 1 1 0 Nucleotide-diphospho-sugar transferase | Ref_seq=scaffold248_contigs=2, transcript_loc=scaffold248_contigs=2:12389-13054 Augustus predicted protein sequence Tobacco scaffold248_contigs=2~12389-13054 RVT_3 PF13456.1 g122137.t1 - 0.0043 16.7 0 0.0062 16.3 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:336796-337098 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~336796-337098 zinc_ribbon_6 PF14599.1 g55576.t1 - 0.072 12.8 0.3 0.091 12.5 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon | Ref_seq=scaffold1219_contigs=14, transcript_loc=scaffold1219_contigs=14:26965-27174 Augustus predicted protein sequence Tobacco scaffold1219_contigs=14~26965-27174 ELF PF03317.8 g62881.t1 - 0.038 13.2 0.2 0.039 13.2 0.1 1.1 1 0 0 1 1 1 0 ELF protein | Ref_seq=scaffold1358_contigs=1, transcript_loc=scaffold1358_contigs=1:1593-1946 Augustus predicted protein sequence Tobacco scaffold1358_contigs=1~1593-1946 CTP_transf_3 PF02348.14 g84956.t1 - 0.15 11.6 0 0.16 11.5 0 1 1 0 0 1 1 1 0 Cytidylyltransferase | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:262556-263308 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~262556-263308 DUF3745 PF12560.3 g55818.t1 - 0.12 12 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3745) | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:1-483 Augustus predicted protein sequence Tobacco scaffold1233_contigs=6~1-483 Allatostatin PF05953.7 g97470.t1 - 1.4 9.6 0.1 1.4 9.6 0.1 4.4 5 0 0 5 5 5 0 Allatostatin | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:108184-108767 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~108184-108767 Podoplanin PF05808.6 g60671.t1 - 0.069 12.7 0.1 0.082 12.4 0 1 1 0 0 1 1 1 0 Podoplanin | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:237995-238252 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~237995-238252 Retinal PF15449.1 g97527.t1 - 0.094 10.3 1.3 0.11 10.1 0.9 1 1 0 0 1 1 1 0 Retinal protein | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:53162-53956 Augustus predicted protein sequence Tobacco scaffold2138_contigs=7~53162-53956 YdjO PF14169.1 g23416.t1 - 0.054 12.9 0.1 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:80929-81777 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~80929-81777 Transposase_28 PF04195.7 g13493.t1 - 0.00039 19.7 0.1 0.00059 19.1 0 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:170168-170635 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~170168-170635 DUF4201 PF13870.1 g104519.t1 - 0.031 13.7 7.3 0.11 11.9 4.8 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:398629-399471 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~398629-399471 ORC6 PF05460.8 g82308.t1 - 8 5.4 9.6 9.7 5.1 6.6 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:182838-183479 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~182838-183479 DUF1349 PF07081.6 g123162.t1 - 0.057 12.7 0 0.082 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:105897-107362 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~105897-107362 zf-CCHC PF00098.18 g97250.t1 - 1.1 9.3 5.2 1.7 8.7 3.6 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2131_contigs=1, transcript_loc=scaffold2131_contigs=1:35283-35537 Augustus predicted protein sequence Tobacco scaffold2131_contigs=1~35283-35537 DUF3729 PF12526.3 g62328.t1 - 6.2 8.2 10.6 7.5 7.9 7.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3729) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:434586-434861 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~434586-434861 DUF3008 PF11450.3 g30562.t1 - 0.042 13.9 3 0.067 13.3 2.1 1.4 1 0 0 1 1 1 0 Protein of unknwon function (DUF3008) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1178434-1178643 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1178434-1178643 CAP_N PF01213.14 g57012.t1 - 8.3 5.5 7.4 18 4.4 5.1 1.6 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1245_contigs=4, transcript_loc=scaffold1245_contigs=4:32543-33340 Augustus predicted protein sequence Tobacco scaffold1245_contigs=4~32543-33340 Trypan_PARP PF05887.6 g97834.t1 - 0.071 12.9 8 0.1 12.4 5.5 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:244245-244565 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~244245-244565 WD40_alt PF14077.1 g110999.t1 - 0.025 14.1 0.8 0.043 13.4 0 1.7 2 0 0 2 2 2 0 Alternative WD40 repeat motif | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:2871-5972 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~2871-5972 TMC PF07810.8 g115414.t1 - 0.074 13.4 0.2 0.094 13.1 0.2 1.2 1 0 0 1 1 1 0 TMC domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:302834-303139 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~302834-303139 DUF4449 PF14613.1 g39803.t1 - 0.046 13.6 0 0.057 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4449) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:264793-265053 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~264793-265053 FH2 PF02181.18 g80083.t1 - 0.0029 16.5 0.2 0.0036 16.2 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:73570-73983 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~73570-73983 DUF2694 PF10904.3 g129839.t1 - 0.075 13 0.9 0.095 12.7 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold3100_contigs=1, transcript_loc=scaffold3100_contigs=1:3735-4382 Augustus predicted protein sequence Tobacco scaffold3100_contigs=1~3735-4382 FlxA PF14282.1 g34669.t1 - 0.012 15.6 4.2 0.012 15.6 2.9 1.9 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:52965-53455 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~52965-53455 Vps16_N PF04841.8 g112963.t1 - 0.069 11.6 0.2 0.097 11.1 0.2 1.2 1 0 0 1 1 1 0 Vps16, N-terminal region | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:26535-27171 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~26535-27171 PLDc_N PF13396.1 g87222.t1 - 0.064 12.9 0.1 0.24 11.1 0 1.8 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:65275-66228 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~65275-66228 zf-CCHC_4 PF14392.1 g99053.t1 - 0.0000002 30.5 0.2 0.0000003 29.9 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2168_contigs=4, transcript_loc=scaffold2168_contigs=4:64648-65028 Augustus predicted protein sequence Tobacco scaffold2168_contigs=4~64648-65028 zf-CCHC_6 PF15288.1 g47812.t1 - 0.038 13.6 1.7 0.13 11.9 0.1 2.2 1 1 1 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:194053-194328 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~194053-194328 FLILHELTA PF10306.4 g36553.t1 - 0.0015 18.5 0.8 0.0041 17.1 0.6 1.8 1 1 0 1 1 1 1 Hypothetical protein FLILHELTA | Ref_seq=scaffold892_contigs=7, transcript_loc=scaffold892_contigs=7:2361-3536 Augustus predicted protein sequence Tobacco scaffold892_contigs=7~2361-3536 SSI PF00720.12 g72446.t1 - 0.028 14.3 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Subtilisin inhibitor-like | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:3914-4156 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~3914-4156 UBN2_2 PF14227.1 g127823.t1 - 0.17 11.4 3 6.2 6.3 0.1 2.5 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2838_contigs=1, transcript_loc=scaffold2838_contigs=1:27537-28599 Augustus predicted protein sequence Tobacco scaffold2838_contigs=1~27537-28599 DUF3285 PF11688.3 g23970.t1 - 0.14 11.7 0.3 0.28 10.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:24782-25331 Augustus predicted protein sequence Tobacco scaffold656_contigs=9~24782-25331 AvrPphF-ORF-2 PF09143.5 g92422.t1 - 0.047 13.3 0.2 0.053 13.2 0.1 1 1 0 0 1 1 1 0 AvrPphF-ORF-2 | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:29873-30133 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~29873-30133 Toxin_35 PF10530.4 g56073.t1 - 0.033 14.2 1.6 0.09 12.8 1.1 1.8 1 0 0 1 1 1 0 Toxin with inhibitor cystine knot ICK or Knottin scaffold | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:20395-20643 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~20395-20643 DUF2650 PF10853.3 g25861.t1 - 0.0072 15.7 3.7 0.0072 15.7 2.6 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2650) | Ref_seq=scaffold706_contigs=4, transcript_loc=scaffold706_contigs=4:31615-31947 Augustus predicted protein sequence Tobacco scaffold706_contigs=4~31615-31947 Antimicrobial_4 PF08024.6 g1280.t1 - 0.0056 16.4 0.1 5.2 7 0 2.4 2 0 0 2 2 2 2 Ant antimicrobial peptide | Ref_seq=scaffold158_contigs=1, transcript_loc=scaffold158_contigs=1:5244-6008 Augustus predicted protein sequence Tobacco scaffold158_contigs=1~5244-6008 PsbP PF01789.11 g118450.t1 - 0.13 11.7 0 0.2 11 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:145721-146596 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~145721-146596 DUF936 PF06075.7 g103192.t1 - 0.095 11.6 0.1 0.087 11.7 0.1 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:113963-114319 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~113963-114319 SR-25 PF10500.4 g43143.t1 - 0.0024 17.3 9.5 0.003 17 6.6 1.3 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:591030-593317 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~591030-593317 FBA_1 PF07734.8 g51195.t1 - 0.00000006 32.5 0 0.00000023 30.6 0 1.9 2 1 0 2 2 2 1 F-box associated | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:36376-37040 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~36376-37040 TATR PF03430.8 g87216.t1 - 0.072 11.7 0.1 0.065 11.8 0.1 1 1 0 0 1 1 1 0 Trans-activating transcriptional regulator | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:53967-54544 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~53967-54544 PBP1_TM PF14812.1 g62509.t1 - 3.4 8 8.8 38 4.6 6.1 2.1 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:103279-103674 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~103279-103674 DUF501 PF04417.7 g39095.t1 - 0.1 12.4 0.4 0.13 12 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF501) | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:266868-267164 Augustus predicted protein sequence Tobacco scaffold948_contigs=6~266868-267164 LTP_2 PF14368.1 g26310.t1 - 0.00003 24 5.6 0.000037 23.7 3.9 1.1 1 0 0 1 1 1 1 Probable lipid transfer | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:33477-34013 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~33477-34013 VMA21 PF09446.5 g117634.t1 - 1 9.2 4.3 1.5 8.8 3 1.5 1 1 0 1 1 1 0 VMA21-like domain | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:204360-204857 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~204360-204857 DUF177 PF02620.12 g71786.t1 - 0.61 10.1 6.2 0.3 11.1 2.4 1.7 1 1 1 2 2 2 0 Uncharacterized ACR, COG1399 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:112792-113346 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~112792-113346 RVT_3 PF13456.1 g105870.t1 - 0.00098 18.8 0 0.0013 18.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:743630-743992 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~743630-743992 PEARLI-4 PF05278.7 g110710.t1 - 0.17 11.2 2.1 0.2 10.9 1.5 1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:293759-294237 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~293759-294237 Wzz PF02706.10 g83116.t1 - 0.0037 17 0.5 0.0052 16.6 0.3 1.2 1 0 0 1 1 1 1 Chain length determinant protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:116717-117166 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~116717-117166 Phosphoprotein PF00922.12 g23108.t1 - 0.085 12 0.3 0.089 12 0.2 1.1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:129560-129880 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~129560-129880 DUF3927 PF13064.1 g98013.t1 - 0.034 13.6 0.2 0.085 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3927) | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:119786-120100 Augustus predicted protein sequence Tobacco scaffold2148_contigs=3~119786-120100 DUF3161 PF11362.3 g109362.t1 - 0.13 12.1 0.3 0.31 10.9 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3161) | Ref_seq=scaffold2501_contigs=8, transcript_loc=scaffold2501_contigs=8:180799-182376 Augustus predicted protein sequence Tobacco scaffold2501_contigs=8~180799-182376 ESPR PF13018.1 g6725.t1 - 0.088 12.4 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Extended Signal Peptide of Type V secretion system | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:40615-41824 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~40615-41824 Globin PF00042.17 g103601.t1 - 0.1 12.9 0 0.15 12.4 0 1.2 1 0 0 1 1 1 0 Globin | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:141137-141697 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~141137-141697 YdjO PF14169.1 g104013.t1 - 0.01 15.2 0 0.021 14.2 0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:111975-114774 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~111975-114774 DUF2026 PF09641.5 g45602.t1 - 0.082 12.2 0.1 0.085 12.2 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:206456-206674 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~206456-206674 DUF4609 PF15382.1 g122519.t1 - 0.088 12.5 0.5 0.12 12 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4609) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:162020-162348 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~162020-162348 Dimer_Tnp_hAT PF05699.9 g89986.t1 - 0.48 10 2.1 0.8 9.3 0 1.9 2 0 0 2 2 2 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:181368-182175 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~181368-182175 NAM-associated PF14303.1 g7038.t1 - 0.000077 23 0.2 0.00013 22.3 0.2 1.3 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:80452-80974 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~80452-80974 DUF29 PF01724.11 g16008.t1 - 0.0062 16.3 2.2 0.0074 16.1 1.5 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF29 | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:41409-41840 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~41409-41840 WRC PF08879.5 g81143.t1 - 0.0091 15.6 0.3 0.014 15 0.2 1.2 1 0 0 1 1 1 1 WRC | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:23654-23899 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~23654-23899 NAD_binding_8 PF13450.1 g45498.t1 - 0.074 13 0.1 0.17 11.9 0 1.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:30188-30556 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~30188-30556 LEM PF03020.10 g103715.t1 - 0.15 11.5 0 0.21 11 0 1.2 1 0 0 1 1 1 0 LEM domain | Ref_seq=scaffold2315_contigs=5, transcript_loc=scaffold2315_contigs=5:17887-18123 Augustus predicted protein sequence Tobacco scaffold2315_contigs=5~17887-18123 DUF4172 PF13776.1 g29488.t1 - 0.032 14.3 6 0.046 13.8 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:46454-47095 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~46454-47095 DUF3028 PF11229.3 g124229.t1 - 0.061 11.5 0.1 0.088 11 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3028) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1670978-1673346 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1670978-1673346 Syntaxin_2 PF14523.1 g109083.t1 - 0.021 14.8 0.1 0.026 14.5 0 1.1 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold2483_contigs=12, transcript_loc=scaffold2483_contigs=12:89574-89891 Augustus predicted protein sequence Tobacco scaffold2483_contigs=12~89574-89891 DUF1347 PF07079.6 g33438.t1 - 0.073 11.2 0.1 0.089 10.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:175928-176383 Augustus predicted protein sequence Tobacco scaffold831_contigs=10~175928-176383 FrhB_FdhB_C PF04432.8 g50556.t1 - 0.048 13 0.1 0.1 11.9 0 1.6 1 1 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:326034-326492 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~326034-326492 ATHILA PF03078.10 g9688.t1 - 0.00005 22 0 0.000053 22 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:93073-93327 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~93073-93327 RVT_3 PF13456.1 g32711.t1 - 3.3E-014 52.4 0.1 0.000003 26.8 0 2.4 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:738395-740431 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~738395-740431 CCSMST1 PF15013.1 g71171.t1 - 0.096 12.6 0 0.14 12 0 1.3 1 0 0 1 1 1 0 CCSMST1 family | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:166947-167405 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~166947-167405 Toxin_67 PF15545.1 g117305.t1 - 0.16 11.8 0 0.24 11.2 0 1.3 1 0 0 1 1 1 0 Putative toxin 67 | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:104917-105458 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~104917-105458 XhlA PF10779.4 g94656.t1 - 0.0096 15.8 1.2 0.021 14.7 0.7 1.7 2 0 0 2 2 2 1 Haemolysin XhlA | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:241003-242135 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~241003-242135 FH2 PF02181.18 g43378.t1 - 0.025 13.4 0 0.026 13.3 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:96598-96888 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~96598-96888 Mu-like_Pro PF10123.4 g16229.t1 - 0.07 12.5 0.3 0.073 12.5 0.2 1 1 0 0 1 1 1 0 Mu-like prophage I protein | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:131294-131512 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~131294-131512 RraB PF06877.6 g10486.t1 - 0.17 12.5 1.7 3.1 8.4 0.5 2 2 0 0 2 2 2 0 Regulator of ribonuclease activity B | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:119111-119877 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~119111-119877 Vir_act_alpha_C PF10400.4 g90253.t1 - 0.052 13.9 0.1 0.073 13.4 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:449466-449771 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~449466-449771 Filo_glycop PF01611.11 g111065.t1 - 0.086 11.6 0.3 0.091 11.5 0.2 1 1 0 0 1 1 1 0 Filovirus glycoprotein | Ref_seq=scaffold2577_contigs=3, transcript_loc=scaffold2577_contigs=3:8047-9602 Augustus predicted protein sequence Tobacco scaffold2577_contigs=3~8047-9602 FH2 PF02181.18 g37835.t1 - 0.02 13.8 0.1 0.025 13.4 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:104012-104458 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~104012-104458 DUF2893 PF11459.3 g83204.t1 - 0.12 12.2 0 0.19 11.5 0 1.3 1 0 0 1 1 1 0 Protein of unknwon function (DUF2893) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:337959-341368 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~337959-341368 zf-CCHC_4 PF14392.1 g82829.t1 - 0.15 11.7 0.4 0.26 11 0.3 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:32444-35380 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~32444-35380 GlyL_C PF12524.3 g127989.t1 - 0.69 9.8 0.1 0.69 9.8 0 2.4 3 0 0 3 3 3 0 dsDNA virus glycoprotein L C terminal | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:13432-14174 Augustus predicted protein sequence Tobacco scaffold2845_contigs=1~13432-14174 RecX PF02631.11 g130005.t1 - 0.039 14.1 0.9 18 5.5 0 2.9 3 0 0 3 3 3 0 RecX family | Ref_seq=scaffold3317_contigs=1, transcript_loc=scaffold3317_contigs=1:321-833 Augustus predicted protein sequence Tobacco scaffold3317_contigs=1~321-833 DUF4211 PF13926.1 g9886.t1 - 0.045 13.1 0 0.084 12.2 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:256323-256876 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~256323-256876 EBV-NA3 PF05009.7 g43931.t1 - 0.14 11.4 1.6 0.15 11.3 1.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:367079-367306 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~367079-367306 SOG2 PF10428.4 g111010.t1 - 0.11 11.1 3.6 0.13 10.9 2.5 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:21714-23906 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~21714-23906 Claudin_3 PF06653.6 g62464.t1 - 0.00082 19.1 1.2 0.00087 19 0.8 1 1 0 0 1 1 1 1 Tight junction protein, Claudin-like | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:291612-292357 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~291612-292357 Nnf1 PF03980.9 g74586.t1 - 0.25 11.3 2.7 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 Nnf1 | Ref_seq=scaffold1558_contigs=4, transcript_loc=scaffold1558_contigs=4:38666-39040 Augustus predicted protein sequence Tobacco scaffold1558_contigs=4~38666-39040 SPOB_a PF14689.1 g46717.t1 - 0.00048 19.6 0 1.2 8.7 0 2.3 2 0 0 2 2 2 2 Sensor_kinase_SpoOB-type, alpha-helical domain | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:20114-23444 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~20114-23444 SlyX PF04102.7 g122081.t1 - 0.012 15.9 4.1 0.022 15.1 2.8 1.4 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:184626-184928 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~184626-184928 DUF4620 PF15399.1 g130365.t1 - 0.042 13.9 0 0.052 13.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4620) | Ref_seq=scaffold4189_contigs=1, transcript_loc=scaffold4189_contigs=1:767-1041 Augustus predicted protein sequence Tobacco scaffold4189_contigs=1~767-1041 SURF2 PF05477.6 g118012.t1 - 0.013 14.6 0.5 0.015 14.3 0.3 1 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:41783-42512 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~41783-42512 TFIIB PF00382.14 g28636.t1 - 0.005 16.6 0 0.0096 15.7 0 1.6 1 0 0 1 1 1 1 Transcription factor TFIIB repeat | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:13518-14137 Augustus predicted protein sequence Tobacco scaffold750_contigs=7~13518-14137 PT PF04886.7 g16203.t1 - 0.048 12.9 3.8 0.14 11.4 2.6 1.8 1 0 0 1 1 1 0 PT repeat | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:73918-74346 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~73918-74346 Imm33 PF15580.1 g18186.t1 - 0.0019 17.6 0 1.9 8 0 2.2 2 0 0 2 2 2 2 Immunity protein 33 | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:54217-54870 Augustus predicted protein sequence Tobacco scaffold547_contigs=4~54217-54870 DUF1675 PF07897.6 g78995.t1 - 0.0016 18.3 0.6 0.0018 18.1 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1675) | Ref_seq=scaffold1681_contigs=3, transcript_loc=scaffold1681_contigs=3:4922-6770 Augustus predicted protein sequence Tobacco scaffold1681_contigs=3~4922-6770 DNA_pol_lambd_f PF10391.4 g29154.t1 - 0.11 12 0 0.22 11.1 0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:204408-204608 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~204408-204608 MG1 PF11974.3 g82297.t1 - 0.025 15.1 0.5 0.068 13.7 0.3 1.8 1 1 1 2 2 2 0 Alpha-2-macroglobulin MG1 domain | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:147908-148584 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~147908-148584 YdjO PF14169.1 g4939.t1 - 0.013 14.9 0.1 0.023 14.1 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:178428-178955 Augustus predicted protein sequence Tobacco scaffold266_contigs=2~178428-178955 VPS28 PF03997.7 g78957.t1 - 0.12 12 0 0.2 11.2 0 1.4 1 0 0 1 1 1 0 VPS28 protein | Ref_seq=scaffold1679_contigs=9, transcript_loc=scaffold1679_contigs=9:4989-5916 Augustus predicted protein sequence Tobacco scaffold1679_contigs=9~4989-5916 CitX PF03802.9 g63903.t1 - 0.0025 17.2 0.1 0.0026 17.1 0.1 1.1 1 0 0 1 1 1 1 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:234588-234806 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~234588-234806 Chol_subst-bind PF09129.6 g49326.t1 - 0.12 11.5 0 0.13 11.3 0 1 1 0 0 1 1 1 0 Cholesterol oxidase, substrate-binding | Ref_seq=scaffold1125_contigs=3, transcript_loc=scaffold1125_contigs=3:123860-124350 Augustus predicted protein sequence Tobacco scaffold1125_contigs=3~123860-124350 RVP_2 PF08284.6 g12206.t1 - 0.002 18 0 0.003 17.5 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:325616-327201 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~325616-327201 TACC PF05010.9 g54748.t1 - 0.086 12.5 0.6 0.11 12.2 0.4 1.2 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:230080-230645 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~230080-230645 DUF4606 PF15379.1 g75771.t1 - 0.1 12.6 5.6 0.42 10.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4606) | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:1105-1704 Augustus predicted protein sequence Tobacco scaffold1596_contigs=1~1105-1704 Phage_endo_I PF05367.6 g5148.t1 - 0.015 14.6 0 0.025 13.9 0 1.3 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:28581-29390 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~28581-29390 CENP-F_leu_zip PF10473.4 g4325.t1 - 0.0042 16.9 2.6 0.007 16.2 1.8 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:111682-112947 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~111682-112947 PX PF00787.19 g70300.t1 - 0.044 13.5 0.4 1 9.1 0 2 1 1 1 2 2 2 0 PX domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:255056-255514 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~255056-255514 GUB_WAK_bind PF13947.1 g17954.t1 - 0.013 16 0.8 0.015 15.8 0.5 1.1 1 0 0 1 1 1 0 Wall-associated receptor kinase galacturonan-binding | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:31719-31997 Augustus predicted protein sequence Tobacco scaffold540_contigs=6~31719-31997 ox_reductase_C PF08635.5 g3961.t1 - 0.1 12 0 0.18 11.2 0 1.3 1 0 0 1 1 1 0 Putative oxidoreductase C terminal | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:157197-157733 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~157197-157733 OAD_gamma PF04277.8 g66986.t1 - 0.012 15.9 1.7 0.13 12.6 0.6 2.4 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:298050-299285 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~298050-299285 RVT_3 PF13456.1 g28.t1 - 0.025 14.3 0 0.034 13.9 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:75233-76065 Augustus predicted protein sequence Tobacco scaffold1_contigs=5~75233-76065 Dimer_Tnp_hAT PF05699.9 g70603.t1 - 0.018 14.6 0 0.028 14 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:607006-607627 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~607006-607627 Ribosomal_S13 PF00416.17 g68892.t1 - 0.12 12.8 0.2 0.17 12.3 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S13/S18 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:50986-51618 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~50986-51618 CDC45 PF02724.9 g42960.t1 - 0.018 13.1 16.6 0.019 13 11.5 1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:30983-31512 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~30983-31512 zf-AD PF07776.10 g80461.t1 - 0.1 12.6 0.7 0.51 10.3 0 2.1 2 0 0 2 2 2 0 Zinc-finger associated domain (zf-AD) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:58246-60588 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~58246-60588 Ku_C PF03730.9 g59740.t1 - 1.2 9.6 9.3 0.11 13 2.7 2 2 0 0 2 2 2 0 Ku70/Ku80 C-terminal arm | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:101693-103127 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~101693-103127 CD52 PF15116.1 g91510.t1 - 0.064 13 0.7 0.064 13 0.5 1.9 2 0 0 2 2 2 0 CAMPATH-1 antigen | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:149534-149881 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~149534-149881 QLQ PF08880.6 g130014.t1 - 0.45 9.9 4.2 0.52 9.7 0.1 2.5 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold3323_contigs=1, transcript_loc=scaffold3323_contigs=1:1384-1710 Augustus predicted protein sequence Tobacco scaffold3323_contigs=1~1384-1710 PRELI PF04707.9 g16280.t1 - 0.043 13.3 0.1 0.062 12.8 0.1 1.2 1 0 0 1 1 1 0 PRELI-like family | Ref_seq=scaffold511_contigs=4, transcript_loc=scaffold511_contigs=4:106040-107683 Augustus predicted protein sequence Tobacco scaffold511_contigs=4~106040-107683 Transglut_C PF00927.17 g66546.t1 - 0.08 12.9 0 11 6 0 2.1 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:15770-16129 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~15770-16129 SMN PF06003.7 g123632.t1 - 0.19 10.7 2.9 0.23 10.5 2 1.3 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:176295-176834 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~176295-176834 RVP_2 PF08284.6 g88598.t1 - 0.000029 24 0.1 0.00004 23.5 0.1 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1931_contigs=8, transcript_loc=scaffold1931_contigs=8:9921-10506 Augustus predicted protein sequence Tobacco scaffold1931_contigs=8~9921-10506 Plant_tran PF04827.9 g733.t1 - 0.000013 24.7 0 0.000013 24.7 0 1.2 1 0 0 1 1 1 1 Plant transposon protein | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:24726-25526 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~24726-25526 HALZ PF02183.13 g107806.t1 - 0.016 14.8 4.7 0.043 13.5 0.3 2.5 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:149170-149691 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~149170-149691 gag_pre-integrs PF13976.1 g72811.t1 - 0.0019 17.7 0 0.0039 16.8 0 1.5 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold1521_contigs=7, transcript_loc=scaffold1521_contigs=7:16809-19028 Augustus predicted protein sequence Tobacco scaffold1521_contigs=7~16809-19028 ATHILA PF03078.10 g60895.t1 - 0.00000069 28.2 0.1 0.00017 20.3 0 2.3 2 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:545988-546778 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~545988-546778 DUF1642 PF07852.6 g68009.t1 - 0.11 12.8 0.3 0.14 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1642) | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:136536-137069 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~136536-137069 zf-RVT PF13966.1 g107573.t1 - 0.00011 22.4 0 0.00017 21.8 0 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:9909-10457 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~9909-10457 zf-BED PF02892.10 g41785.t1 - 0.014 15.1 2.4 0.034 13.8 1.7 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:1-688 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~1-688 DMPK_coil PF08826.5 g12253.t1 - 0.71 9.8 4.1 0.59 10 1.1 2.1 3 0 0 3 3 3 0 DMPK coiled coil domain like | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:403430-404229 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~403430-404229 Pox_A6 PF04924.7 g34594.t1 - 0.13 11 0 0.15 10.8 0 1.1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:16605-17024 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~16605-17024 NESP55 PF06390.7 g102691.t1 - 0.11 11.9 6.3 0.2 10.9 4.4 1.6 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:72893-73249 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~72893-73249 DUF1509 PF07420.6 g102391.t1 - 0.015 14.5 1.8 0.016 14.4 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:110783-111659 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~110783-111659 DUF1835 PF08874.5 g96521.t1 - 0.046 13.6 0 0.057 13.3 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1835) | Ref_seq=scaffold2110_contigs=2, transcript_loc=scaffold2110_contigs=2:8417-8743 Augustus predicted protein sequence Tobacco scaffold2110_contigs=2~8417-8743 DUF2039 PF10217.4 g108861.t1 - 0.076 13 2.7 0.11 12.5 1.8 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:394944-395700 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~394944-395700 DUF3337 PF11816.3 g125427.t1 - 0.013 14.9 3.8 0.014 14.8 2.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:89338-89718 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~89338-89718 HOOK PF05622.7 g83456.t1 - 0.002 16 0.9 0.0022 15.9 0.6 1 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:11778-12152 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~11778-12152 DUF4572 PF15139.1 g88526.t1 - 0.044 13.6 0.2 0.047 13.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4572) | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:30503-30709 Augustus predicted protein sequence Tobacco scaffold1928_contigs=20~30503-30709 Unstab_antitox PF09720.5 g24860.t1 - 0.037 13.7 0.1 0.11 12.2 0.1 1.9 1 0 0 1 1 1 0 Putative addiction module component | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:7819-9033 Augustus predicted protein sequence Tobacco scaffold679_contigs=3~7819-9033 Phage_holin PF04688.8 g32885.t1 - 0.28 10.7 5.1 1.9 8 0.1 2.3 2 0 0 2 2 2 0 Phage lysis protein, holin | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:99161-100072 Augustus predicted protein sequence Tobacco scaffold823_contigs=8~99161-100072 Oest_recep PF02159.10 g29525.t1 - 0.31 11.1 1.7 0.48 10.5 1.2 1.3 1 0 0 1 1 1 0 Oestrogen receptor | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:121485-121895 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~121485-121895 DUF4330 PF14221.1 g36436.t1 - 0.11 12.3 0.1 0.12 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:74077-74331 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~74077-74331 TMEM89 PF15098.1 g1841.t1 - 0.13 12.2 0.5 0.17 11.9 0.3 1.2 1 0 0 1 1 1 0 TMEM89 protein family | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:27746-27955 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~27746-27955 Kisspeptin PF15152.1 g12760.t1 - 0.12 13 0 0.16 12.7 0 1.3 1 0 0 1 1 1 0 Kisspeptin | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:427383-427622 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~427383-427622 Med12 PF09497.5 g29933.t1 - 0.13 12.2 0.7 0.7 9.9 0.5 2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:59904-60203 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~59904-60203 SSP160 PF06933.6 g122499.t1 - 2 6.3 12 2.2 6.1 8.3 1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:134766-135068 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~134766-135068 Lipoprotein_3 PF00938.12 g66956.t1 - 0.12 12.1 0.1 0.19 11.5 0.1 1.2 1 0 0 1 1 1 0 Lipoprotein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:208514-208954 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~208514-208954 Telomerase_RBD PF12009.3 g66951.t1 - 0.15 11.9 0 0.16 11.8 0 1 1 0 0 1 1 1 0 Telomerase ribonucleoprotein complex - RNA binding domain | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:206634-206876 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~206634-206876 SPOUT_MTase PF02590.12 g111318.t1 - 0.46 10.1 2.9 0.78 9.4 2 1.3 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:92344-92993 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~92344-92993 Syntaxin PF00804.20 g61736.t1 - 0.11 12.6 0.4 0.15 12.1 0.3 1.2 1 0 0 1 1 1 0 Syntaxin | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:228011-228457 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~228011-228457 MOSC_N PF03476.11 g101251.t1 - 0.11 12.2 0 0.12 12 0 1.2 1 0 0 1 1 1 0 MOSC N-terminal beta barrel domain | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:99605-100055 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~99605-100055 NAM-associated PF14303.1 g29020.t1 - 0.076 13.3 11.2 0.11 12.7 7.7 1.3 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:23919-25930 Augustus predicted protein sequence Tobacco scaffold754_contigs=7~23919-25930 DUF1373 PF07117.6 g18577.t1 - 0.0038 16.9 0.2 0.0041 16.8 0.1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1373) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:257680-257937 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~257680-257937 GRP PF07172.6 g109129.t1 - 0.000002 28.2 147.2 0.000026 24.6 0.3 4.2 1 1 1 2 2 2 1 Glycine rich protein family | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:80453-81722 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~80453-81722 DUF2264 PF10022.4 g115132.t1 - 0.069 11.7 0.3 0.09 11.4 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:73012-73512 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~73012-73512 Cu-oxidase_3 PF07732.10 g112128.t1 - 0.037 13.7 0.8 7.1 6.3 0.1 2.1 1 1 0 2 2 2 0 Multicopper oxidase | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:12060-12538 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~12060-12538 RVT_3 PF13456.1 g37539.t1 - 0.00011 21.8 0 0.00015 21.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold927_contigs=11, transcript_loc=scaffold927_contigs=11:329572-329793 Augustus predicted protein sequence Tobacco scaffold927_contigs=11~329572-329793 DUF3970 PF13113.1 g74459.t1 - 0.1 12.2 0.1 0.14 11.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:325056-325283 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~325056-325283 FA_desaturase PF00487.19 g91506.t1 - 0.0068 15.8 0.1 0.0074 15.7 0 1 1 0 0 1 1 1 1 Fatty acid desaturase | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:141344-142716 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~141344-142716 zf-CCHC PF00098.18 g76117.t1 - 0.012 15.5 2 0.027 14.4 0.2 2.1 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:240228-240635 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~240228-240635 BPS PF08947.5 g118282.t1 - 0.037 13.6 0.1 0.065 12.8 0.1 1.4 1 0 0 1 1 1 0 BPS (Between PH and SH2) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:281524-282658 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~281524-282658 rve PF00665.21 g42498.t1 - 0.0026 17.8 0 0.0033 17.5 0 1.2 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:22673-23510 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~22673-23510 NAM-associated PF14303.1 g104332.t1 - 0.0003 21.1 2.2 0.0004 20.7 1.5 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:548055-548684 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~548055-548684 Tropomyosin PF00261.15 g8416.t1 - 0.0094 15 4.3 0.016 14.2 3 1.3 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:52779-53207 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~52779-53207 Retrotrans_gag PF03732.12 g29138.t1 - 0.046 13.7 0 0.078 13 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:186289-186876 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~186289-186876 RVP_2 PF08284.6 g84490.t1 - 5.2E-010 39.3 0.1 5.7E-010 39.2 0 1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:88578-88829 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~88578-88829 GAS PF13851.1 g125870.t1 - 0.027 13.6 0.3 0.033 13.3 0.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold2782_contigs=1, transcript_loc=scaffold2782_contigs=1:49462-50163 Augustus predicted protein sequence Tobacco scaffold2782_contigs=1~49462-50163 Dicer_dimer PF03368.9 g9225.t1 - 0.026 14.2 0.1 2.9 7.7 0 2.2 2 0 0 2 2 2 0 Dicer dimerisation domain | Ref_seq=scaffold355_contigs=5, transcript_loc=scaffold355_contigs=5:67181-67720 Augustus predicted protein sequence Tobacco scaffold355_contigs=5~67181-67720 PPP4R2 PF09184.6 g123766.t1 - 1 8.8 28.1 1.2 8.6 19.5 1.2 1 0 0 1 1 1 0 PPP4R2 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:518857-519906 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~518857-519906 Psb28 PF03912.9 g53631.t1 - 0.08 12.9 0 0.082 12.8 0 1.1 1 0 0 1 1 1 0 Psb28 protein | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:3441-3671 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~3441-3671 PH_3 PF14593.1 g70266.t1 - 0.043 13.6 0 0.062 13.1 0 1.3 1 0 0 1 1 1 0 PH domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:184223-184519 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~184223-184519 DUF1180 PF06679.7 g63666.t1 - 7.1 6.4 6.7 8.1 6.3 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:8039-8863 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~8039-8863 DoxX_3 PF13781.1 g42637.t1 - 0.061 13.6 0.2 0.071 13.4 0.1 1.2 1 0 0 1 1 1 0 DoxX-like family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:217960-218545 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~217960-218545 RPW8 PF05659.6 g95615.t1 - 0.0036 16.8 0.5 0.0036 16.8 0.4 1.9 2 0 0 2 2 2 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:143899-144479 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~143899-144479 SNAP-25 PF00835.14 g30528.t1 - 0.067 13.9 0.9 0.067 13.9 0.6 1.5 2 0 0 2 2 2 0 SNAP-25 family | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1115300-1115626 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1115300-1115626 Fungal_trans_2 PF11951.3 g25637.t1 - 0.097 11.2 0 0.1 11.1 0 1 1 0 0 1 1 1 0 Fungal specific transcription factor domain | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:159800-160165 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~159800-160165 DUF2238 PF09997.4 g45550.t1 - 0.12 11.7 0 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:128835-129122 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~128835-129122 LAT PF15234.1 g92958.t1 - 0.038 13.4 0.3 0.049 13.1 0.2 1.1 1 0 0 1 1 1 0 Linker for activation of T-cells | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:329391-329885 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~329391-329885 FG-GAP PF01839.18 g7128.t1 - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 FG-GAP repeat | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:101535-101753 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~101535-101753 ABC2_membrane_3 PF12698.2 g80729.t1 - 0.014 14.4 0.3 0.017 14.1 0.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:195271-197111 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~195271-197111 DUF1003 PF06210.6 g20109.t1 - 0.013 15.4 0.3 0.022 14.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:98552-100659 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~98552-100659 Herpes_U5 PF05999.6 g111913.t1 - 0.0011 17.7 0.5 0.61 8.6 0 2 1 1 1 2 2 2 2 Herpesvirus U5-like family | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:18004-19558 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~18004-19558 IFP_35_N PF07334.8 g86197.t1 - 0.075 13 1.2 0.19 11.7 0.8 1.8 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:201838-202533 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~201838-202533 RuvA_N PF01330.16 g77295.t1 - 0.0061 16.3 0.3 4 7.3 0 2.3 2 0 0 2 2 2 2 RuvA N terminal domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:263326-265391 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~263326-265391 Pec_lyase_C PF00544.14 g62339.t1 - 0.001 18.6 0.1 1.4 8.3 0 2.1 2 0 0 2 2 2 2 Pectate lyase | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:468797-469975 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~468797-469975 tRNA_bind PF01588.15 g2678.t1 - 0.045 13.5 0 0.052 13.3 0 1.1 1 0 0 1 1 1 0 Putative tRNA binding domain | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:68651-69596 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~68651-69596 FYVE PF01363.16 g3250.t1 - 0.036 13.9 0.9 0.13 12.1 0.6 1.8 1 1 0 1 1 1 0 FYVE zinc finger | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:121041-121583 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~121041-121583 DUF594 PF04578.8 g37741.t1 - 1.4 8.4 4.7 11 5.5 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF594 | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:303683-304154 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~303683-304154 DUF2360 PF10152.4 g41120.t1 - 0.12 12.6 1.1 0.15 12.3 0.7 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:707386-707775 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~707386-707775 BTG PF07742.7 g96676.t1 - 0.064 12.7 0 0.075 12.5 0 1.1 1 0 0 1 1 1 0 BTG family | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:121233-121505 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~121233-121505 Vps39_2 PF10367.4 g41205.t1 - 0.083 13 1.9 0.095 12.8 1.3 1.1 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:13628-13906 Augustus predicted protein sequence Tobacco scaffold985_contigs=1~13628-13906 DUF2016 PF09436.5 g94590.t1 - 0.094 12.3 0 0.52 9.9 0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2016) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:123945-125531 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~123945-125531 SbmA_BacA PF05992.7 g93288.t1 - 0.1 11.7 0 0.1 11.7 0 1.1 1 0 0 1 1 1 0 SbmA/BacA-like family | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:186296-186822 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~186296-186822 Protamine_P2 PF00841.14 g70344.t1 - 0.49 10.9 4.8 0.12 12.9 0.7 1.9 2 0 0 2 2 2 0 Sperm histone P2 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:325948-326504 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~325948-326504 MGC-24 PF05283.6 g55945.t1 - 0.052 13.3 1.2 0.055 13.2 0.9 1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:197920-198222 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~197920-198222 DUF968 PF06147.6 g81436.t1 - 0.069 13 0.8 0.098 12.5 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF968) | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:245421-246284 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~245421-246284 SAM_1 PF00536.25 g32848.t1 - 0.12 12.5 0.1 7.7 6.7 0 2.3 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) | Ref_seq=scaffold822_contigs=2, transcript_loc=scaffold822_contigs=2:40357-41232 Augustus predicted protein sequence Tobacco scaffold822_contigs=2~40357-41232 T2SN PF01203.14 g67976.t1 - 0.00037 20.1 0.2 0.00048 19.7 0.1 1.2 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein N | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:71137-71670 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~71137-71670 DUF1140 PF06600.6 g114720.t1 - 0.00076 19.5 0 0.71 10 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1140) | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:10604-11128 Augustus predicted protein sequence Tobacco scaffold2654_contigs=6~10604-11128 DUF755 PF05501.6 g18558.t1 - 0.09 12.8 12.1 0.1 12.6 8.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:219894-220094 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~219894-220094 Cloacin_immun PF03513.9 g113464.t1 - 0.014 15.4 1 0.02 14.9 0.7 1.4 1 1 0 1 1 1 0 Cloacin immunity protein | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:77939-78422 Augustus predicted protein sequence Tobacco scaffold2632_contigs=8~77939-78422 Radial_spoke_3 PF06098.6 g59307.t1 - 0.059 12.3 4.9 0.07 12.1 3.4 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:149333-149707 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~149333-149707 NESP55 PF06390.7 g94961.t1 - 0.061 12.7 0.1 0.066 12.5 0 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:97745-98065 Augustus predicted protein sequence Tobacco scaffold2049_contigs=3~97745-98065 DivIC PF04977.10 g20119.t1 - 0.0022 17.4 5.5 1.8 8.1 0 3.2 2 1 1 3 3 3 2 Septum formation initiator | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:123453-123947 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~123453-123947 NB-ARC PF00931.17 g92910.t1 - 0.0000013 27.5 0 0.0000014 27.3 0 1.2 1 0 0 1 1 1 1 NB-ARC domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:176071-177593 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~176071-177593 DUF2688 PF10892.3 g57469.t1 - 0.00051 19.6 0 0.001 18.6 0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2688) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:234015-235025 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~234015-235025 RCC1 PF00415.13 g38875.t1 - 0.0012 19 0 1.6 8.9 0 2.3 2 0 0 2 2 2 2 Regulator of chromosome condensation (RCC1) repeat | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:134048-134481 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~134048-134481 DBD_Tnp_Mut PF03108.10 g102159.t1 - 0.000013 24.6 0.1 0.000025 23.7 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:231097-233150 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~231097-233150 Phage_fiber_C PF06820.7 g43400.t1 - 0.13 12.4 0 0.23 11.6 0 1.4 1 0 0 1 1 1 0 Putative prophage tail fibre C-terminus | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:149023-151070 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~149023-151070 JSRP PF15312.1 g67987.t1 - 0.052 13.5 0.8 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Junctional sarcoplasmic reticulum protein | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:103901-105427 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~103901-105427 Rad21_Rec8 PF04824.11 g65507.t1 - 0.059 12.5 0.1 15 4.8 0 2.7 2 0 0 2 2 2 0 Conserved region of Rad21 / Rec8 like protein | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:63096-64166 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~63096-64166 H_kinase_N PF12282.3 g121389.t1 - 0.054 13 0 0.083 12.4 0 1.2 1 1 0 1 1 1 0 Signal transduction histidine kinase | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1074836-1075069 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1074836-1075069 PD-C2-AF1 PF09310.5 g13087.t1 - 0.11 11.6 0 0.13 11.4 0 1.1 1 0 0 1 1 1 0 POU domain, class 2, associating factor 1 | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:71473-71942 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~71473-71942 zf-CCHC PF00098.18 g115665.t1 - 0.00011 21.9 0.7 0.00016 21.3 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:923437-925031 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~923437-925031 Prot_inhib_II PF02428.10 g28430.t1 - 0.043 13.8 3.4 0.082 12.9 2.4 1.4 1 0 0 1 1 1 0 Potato type II proteinase inhibitor family | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:85036-85371 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~85036-85371 DUF4471 PF14740.1 g25582.t1 - 0.087 12 0.6 0.085 12 0.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:46272-46577 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~46272-46577 Tropomyosin_1 PF12718.2 g73187.t1 - 0.004 17 6.6 0.0059 16.4 4.6 1.3 1 0 0 1 1 1 1 Tropomyosin like | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:16335-17050 Augustus predicted protein sequence Tobacco scaffold1532_contigs=5~16335-17050 Glycos_transf_1 PF00534.15 g41117.t1 - 0.064 12.6 0.4 0.13 11.7 0.3 1.5 1 1 0 1 1 1 0 Glycosyl transferases group 1 | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:705652-705909 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~705652-705909 SRRM_C PF15230.1 g105532.t1 - 0.13 12.3 1.9 0.18 11.8 1.3 1.1 1 0 0 1 1 1 0 Serine/arginine repetitive matrix protein C-terminus | Ref_seq=scaffold2356_contigs=4, transcript_loc=scaffold2356_contigs=4:32974-33261 Augustus predicted protein sequence Tobacco scaffold2356_contigs=4~32974-33261 Cas_Cas5d PF09704.5 g47335.t1 - 0.009 15.6 0 0.012 15.2 0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) | Ref_seq=scaffold1094_contigs=5, transcript_loc=scaffold1094_contigs=5:100989-101318 Augustus predicted protein sequence Tobacco scaffold1094_contigs=5~100989-101318 HTH_43 PF09904.4 g42526.t1 - 0.017 14.8 0.1 50 3.7 0 3.4 3 0 0 3 3 3 0 Winged helix-turn helix | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:58410-60079 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~58410-60079 DUF4219 PF13961.1 g87270.t1 - 0.0021 17.4 0 0.0034 16.7 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:176307-177148 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~176307-177148 Vir_act_alpha_C PF10400.4 g42232.t1 - 0.074 13.4 1.8 0.19 12.1 0.1 2 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:247092-247457 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~247092-247457 MBT PF02820.13 g93992.t1 - 0.15 12 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 mbt repeat | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:350784-354859 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~350784-354859 CENP-F_leu_zip PF10473.4 g35355.t1 - 0.14 11.9 0 0.19 11.5 0 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:13895-14353 Augustus predicted protein sequence Tobacco scaffold871_contigs=9~13895-14353 DUF3886 PF13025.1 g66246.t1 - 0.2 11.6 7.4 0.28 11.1 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:44505-44858 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~44505-44858 Hormone_1 PF00103.15 g107973.t1 - 0.078 12.3 0 0.078 12.3 0 1 1 0 0 1 1 1 0 Somatotropin hormone family | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:6911-7195 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~6911-7195 MtrG PF04210.8 g95208.t1 - 0.2 11.3 1.1 3.1 7.5 0 2.7 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:331758-332102 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~331758-332102 FadA PF09403.5 g122880.t1 - 0.034 14.1 2.2 0.049 13.6 1.5 1.3 1 0 0 1 1 1 0 Adhesion protein FadA | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:21841-22804 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~21841-22804 DUF2594 PF10769.4 g49781.t1 - 0.027 14.5 0.8 0.087 12.9 0.1 2 2 0 0 2 2 2 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:132554-133700 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~132554-133700 Mycoplasma_p37 PF06646.6 g40553.t1 - 0.16 10.9 0 0.21 10.5 0 1.1 1 0 0 1 1 1 0 High affinity transport system protein p37 | Ref_seq=scaffold977_contigs=2, transcript_loc=scaffold977_contigs=2:7681-8919 Augustus predicted protein sequence Tobacco scaffold977_contigs=2~7681-8919 AAA_12 PF13087.1 g68016.t1 - 0.0023 17.3 0.4 0.42 9.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:161678-161959 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~161678-161959 DUF4083 PF13314.1 g60615.t1 - 0.0082 15.9 2.8 0.02 14.7 2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4083) | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:66279-68207 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~66279-68207 CagY_M PF07337.6 g124600.t1 - 0.52 9.8 2.7 0.91 9 0.2 2.5 3 0 0 3 3 3 0 DC-EC Repeat | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:104540-104800 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~104540-104800 FDX-ACB PF03147.9 g35138.t1 - 0.047 13.8 0 0.092 12.9 0 1.4 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:103444-104567 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~103444-104567 Upf2 PF04050.9 g120716.t1 - 0.16 11.7 2 0.21 11.3 1.4 1.2 1 0 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold2728_contigs=7, transcript_loc=scaffold2728_contigs=7:67056-68169 Augustus predicted protein sequence Tobacco scaffold2728_contigs=7~67056-68169 DUF1843 PF08898.5 g104109.t1 - 0.00092 19.2 0 4.5 7.3 0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF1843) | Ref_seq=scaffold2332_contigs=1, transcript_loc=scaffold2332_contigs=1:13504-14557 Augustus predicted protein sequence Tobacco scaffold2332_contigs=1~13504-14557 RVT_3 PF13456.1 g23536.t1 - 0.00000094 28.5 0 0.0000015 27.8 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold650_contigs=1, transcript_loc=scaffold650_contigs=1:35298-37087 Augustus predicted protein sequence Tobacco scaffold650_contigs=1~35298-37087 ATHILA PF03078.10 g7561.t1 - 2.7E-010 39.4 0.1 3.5E-010 39 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:376383-378991 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~376383-378991 ATHILA PF03078.10 g20488.t1 - 0.0078 14.8 0 0.17 10.4 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:357912-358442 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~357912-358442 Allexi_40kDa PF05549.6 g76539.t1 - 0.034 13.4 0.2 0.042 13.1 0.1 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:12848-13267 Augustus predicted protein sequence Tobacco scaffold1615_contigs=2~12848-13267 CCDC144C PF14915.1 g122021.t1 - 0.18 10.7 6 0.2 10.5 4.2 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:14091-14592 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~14091-14592 RNase_T PF00929.19 g20068.t1 - 0.08 13.2 0 0.13 12.5 0 1.3 1 0 0 1 1 1 0 Exonuclease | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:37837-38486 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~37837-38486 DUF2989 PF11207.3 g50051.t1 - 0.0018 17.7 0 0.0021 17.5 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF2989) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:159626-160269 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~159626-160269 DUF2443 PF10398.4 g104944.t1 - 0.0043 16.8 0.6 1.6 8.5 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2443) | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:142986-144299 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~142986-144299 TMEM18 PF14770.1 g11616.t1 - 0.018 14.5 1.3 0.018 14.5 0.9 1.5 2 0 0 2 2 2 0 Transmembrane protein 18 | Ref_seq=scaffold409_contigs=16, transcript_loc=scaffold409_contigs=16:372089-372379 Augustus predicted protein sequence Tobacco scaffold409_contigs=16~372089-372379 Mito_fiss_reg PF05308.6 g23011.t1 - 0.33 10.2 2.4 0.36 10.1 1.6 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold633_contigs=1, transcript_loc=scaffold633_contigs=1:3601-3849 Augustus predicted protein sequence Tobacco scaffold633_contigs=1~3601-3849 UBN2_3 PF14244.1 g106344.t1 - 0.061 12.8 0 0.069 12.7 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:194101-194621 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~194101-194621 RP-C_C PF11800.3 g10352.t1 - 0.1 12.2 0.2 0.12 12 0.1 1 1 0 0 1 1 1 0 Replication protein C C-terminal region | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:156319-156723 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~156319-156723 YojJ PF10372.4 g99357.t1 - 0.12 12.2 0.3 0.34 10.8 0.2 1.8 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:300114-301035 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~300114-301035 Flu_NP PF00506.13 g88407.t1 - 0.014 13.9 0.6 0.015 13.7 0.4 1 1 0 0 1 1 1 0 Influenza virus nucleoprotein | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:190095-190340 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~190095-190340 Transposase_28 PF04195.7 g117279.t1 - 0.1 11.8 0 0.2 10.9 0 1.4 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:47754-48134 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~47754-48134 DUF1843 PF08898.5 g94642.t1 - 0.078 13 0.6 0.13 12.3 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:220862-221494 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~220862-221494 G0-G1_switch_2 PF15103.1 g9900.t1 - 0.044 14 0 0.059 13.5 0 1.3 1 0 0 1 1 1 0 G0/G1 switch protein 2 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:302116-302541 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~302116-302541 PSDC PF12588.3 g41653.t1 - 0.06 12.9 0.1 0.082 12.5 0 1.2 1 0 0 1 1 1 0 Phophatidylserine decarboxylase | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:140890-141324 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~140890-141324 RCSD PF05177.7 g68138.t1 - 7.8 7 14.3 3.9 8 5.7 2.3 1 1 1 2 2 2 0 RCSD region | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:142397-143200 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~142397-143200 Imm39 PF15600.1 g50220.t1 - 0.054 13.3 0 0.096 12.5 0 1.3 1 1 0 1 1 1 0 Immunity protein 39 | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:171111-171473 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~171111-171473 Ribosomal_S27 PF01599.14 g114464.t1 - 0.08 12.7 0 0.13 12 0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27a | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:42642-43004 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~42642-43004 zf-CCHC_3 PF13917.1 g83548.t1 - 0.0049 16.5 0.5 0.0091 15.7 0.3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:70659-70952 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~70659-70952 RuvB_C PF05491.8 g19748.t1 - 0.1 12.2 0 2.6 7.7 0 2.3 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:302180-305750 Augustus predicted protein sequence Tobacco scaffold572_contigs=22~302180-305750 bZIP_1 PF00170.16 g85470.t1 - 0.0096 15.8 7.7 0.073 13 1.3 2.4 1 1 1 2 2 2 2 bZIP transcription factor | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:172539-173030 Augustus predicted protein sequence Tobacco scaffold1834_contigs=13~172539-173030 DUF1510 PF07423.6 g87362.t1 - 2.1 7.6 11.2 2.9 7.1 7.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:14407-14957 Augustus predicted protein sequence Tobacco scaffold1877_contigs=4~14407-14957 GAD-like PF08887.6 g110632.t1 - 0.029 14.4 0 0.04 13.9 0 1.2 1 0 0 1 1 1 0 GAD-like domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:139004-141602 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~139004-141602 TIM-br_sig_trns PF09370.5 g53911.t1 - 0.13 11.2 0 0.17 10.9 0 1.1 1 0 0 1 1 1 0 TIM-barrel signal transduction protein | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:320113-321255 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~320113-321255 DUF4303 PF14136.1 g69873.t1 - 0.12 12 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:375710-376135 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~375710-376135 Halo_GVPC PF05465.8 g23618.t1 - 0.16 11.9 0.7 0.33 10.9 0.2 1.7 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:201985-202847 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~201985-202847 PTCB-BRCT PF12738.2 g38120.t1 - 0.1 12.4 0.4 16 5.4 0 2.7 1 1 0 2 2 2 0 twin BRCT domain | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:240801-241127 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~240801-241127 Gag_p6 PF08705.6 g121571.t1 - 0.014 15.3 1.5 0.024 14.6 1 1.3 1 0 0 1 1 1 0 Gag protein p6 | Ref_seq=scaffold2734_contigs=11, transcript_loc=scaffold2734_contigs=11:94286-94498 Augustus predicted protein sequence Tobacco scaffold2734_contigs=11~94286-94498 DUF4201 PF13870.1 g29542.t1 - 0.061 12.7 7.4 0.65 9.4 1.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:163123-163719 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~163123-163719 Mad3_BUB1_I PF08311.7 g14637.t1 - 0.061 13.1 0 0.1 12.4 0 1.3 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:185529-186176 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~185529-186176 Meth_synt_1 PF08267.7 g16042.t1 - 0.0086 15.3 0.6 0.01 15.1 0.4 1 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:142893-143207 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~142893-143207 Imm40 PF15582.1 g47578.t1 - 0.043 12.5 0.1 0.052 12.2 0.1 1.1 1 0 0 1 1 1 0 Immunity protein 40 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:271415-271753 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~271415-271753 IBD PF10416.4 g104184.t1 - 0.035 13.8 0 1.6 8.5 0 2.1 2 0 0 2 2 2 0 Transcription-initiator DNA-binding domain IBD | Ref_seq=scaffold2335_contigs=12, transcript_loc=scaffold2335_contigs=12:13808-15593 Augustus predicted protein sequence Tobacco scaffold2335_contigs=12~13808-15593 zf-CCHC_5 PF14787.1 g58099.t1 - 0.01 15.3 3.6 0.019 14.4 2.5 1.5 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:353773-354063 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~353773-354063 SinI PF08671.5 g35605.t1 - 0.39 10.1 2.4 3.2 7.2 0 2.3 2 0 0 2 2 2 0 Anti-repressor SinI | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:177140-177676 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~177140-177676 ATHILA PF03078.10 g95793.t1 - 0.002 16.7 0 0.0022 16.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:345421-345930 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~345421-345930 Transposase_28 PF04195.7 g50759.t1 - 0.099 11.9 0 0.13 11.5 0 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:33585-34653 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~33585-34653 TB PF00683.12 g125647.t1 - 0.079 12.5 1.5 8 6.1 0.1 2.2 2 0 0 2 2 2 0 TB domain | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:111946-112803 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~111946-112803 zf-CCHC PF00098.18 g27044.t1 - 0.022 14.6 1.3 0.022 14.6 0.9 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:792037-792255 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~792037-792255 DBD_Tnp_Mut PF03108.10 g2379.t1 - 0.013 15 0 0.025 14.1 0 1.5 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold210_contigs=2, transcript_loc=scaffold210_contigs=2:34928-35506 Augustus predicted protein sequence Tobacco scaffold210_contigs=2~34928-35506 2Fe-2S_Ferredox PF11591.3 g105713.t1 - 0.19 11.4 3.2 0.74 9.5 2.2 2 1 1 0 1 1 1 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold2364_contigs=4, transcript_loc=scaffold2364_contigs=4:68394-69087 Augustus predicted protein sequence Tobacco scaffold2364_contigs=4~68394-69087 Cortex-I_coil PF09304.5 g59352.t1 - 0.11 12.6 0.2 0.18 11.8 0.1 1.5 1 1 1 2 2 2 0 Cortexillin I, coiled coil | Ref_seq=scaffold1290_contigs=9, transcript_loc=scaffold1290_contigs=9:100165-100437 Augustus predicted protein sequence Tobacco scaffold1290_contigs=9~100165-100437 Sigma70_ner PF04546.8 g45726.t1 - 0.0071 15.9 2.9 0.014 15 2 1.5 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:472139-474201 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~472139-474201 TSGP1 PF07771.6 g116805.t1 - 8.3 6.3 7.3 1.9 8.3 0.2 2.2 2 0 0 2 2 2 0 Tick salivary peptide group 1 | Ref_seq=scaffold2676_contigs=4, transcript_loc=scaffold2676_contigs=4:68924-72402 Augustus predicted protein sequence Tobacco scaffold2676_contigs=4~68924-72402 DUF2161 PF09929.4 g22778.t1 - 0.071 13 0.1 0.093 12.6 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:308477-308719 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~308477-308719 RraB PF06877.6 g110522.t1 - 0.087 13.4 1.2 0.11 13.1 0.6 1.3 1 1 0 1 1 1 0 Regulator of ribonuclease activity B | Ref_seq=scaffold2559_contigs=11, transcript_loc=scaffold2559_contigs=11:68637-68951 Augustus predicted protein sequence Tobacco scaffold2559_contigs=11~68637-68951 GCR1_C PF12550.3 g128716.t1 - 0.1 12.4 1.1 2.9 7.8 0.1 2.1 1 1 1 2 2 2 0 Transcriptional activator of glycolytic enzymes | Ref_seq=scaffold2883_contigs=1, transcript_loc=scaffold2883_contigs=1:33798-34121 Augustus predicted protein sequence Tobacco scaffold2883_contigs=1~33798-34121 zinc_ribbon_6 PF14599.1 g55575.t1 - 0.072 12.8 0.3 0.091 12.5 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon | Ref_seq=scaffold1219_contigs=14, transcript_loc=scaffold1219_contigs=14:26475-26684 Augustus predicted protein sequence Tobacco scaffold1219_contigs=14~26475-26684 KaiB PF07689.7 g93608.t1 - 2 7.9 5.1 2.6 7.5 3.5 1.2 1 0 0 1 1 1 0 KaiB domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:208450-208665 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~208450-208665 Big_3_2 PF12245.3 g128239.t1 - 0.084 12.4 0 0.15 11.6 0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:46293-46544 Augustus predicted protein sequence Tobacco scaffold2856_contigs=1~46293-46544 DUF4357 PF14267.1 g84579.t1 - 0.043 13.4 1.1 0.066 12.8 0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4357) | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:261397-262795 Augustus predicted protein sequence Tobacco scaffold1823_contigs=11~261397-262795 DUF2681 PF10883.3 g38893.t1 - 1.6 8.9 4.4 1.9 8.7 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:205628-205831 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~205628-205831 Bactofilin PF04519.8 g32019.t1 - 0.074 13 0.4 0.095 12.7 0.3 1.2 1 0 0 1 1 1 0 Polymer-forming cytoskeletal | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:126941-128272 Augustus predicted protein sequence Tobacco scaffold802_contigs=3~126941-128272 RNA_bind PF08675.6 g41908.t1 - 0.099 12.6 0.2 0.32 11 0 1.7 2 0 0 2 2 2 0 RNA binding domain | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:219874-220233 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~219874-220233 ERM PF00769.14 g101259.t1 - 0.0056 16.2 2.2 0.0079 15.7 1.6 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:115664-116014 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~115664-116014 Herpes_env PF01673.13 g21596.t1 - 0.14 10.7 0.4 0.16 10.4 0.3 1.1 1 0 0 1 1 1 0 Herpesvirus putative major envelope glycoprotein | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:114255-115206 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~114255-115206 DUF1985 PF09331.6 g11752.t1 - 0.000000011 34.9 0.2 0.000000015 34.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:85614-86336 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~85614-86336 Sporozoite_P67 PF05642.6 g130030.t1 - 0.2 9.4 7.2 0.2 9.4 5 1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold3336_contigs=1, transcript_loc=scaffold3336_contigs=1:1748-2414 Augustus predicted protein sequence Tobacco scaffold3336_contigs=1~1748-2414 RnfC_N PF13375.1 g104251.t1 - 0.14 11.8 0 0.56 9.9 0 1.8 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:291265-291525 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~291265-291525 FAM176 PF14851.1 g62156.t1 - 0.15 11.6 1 0.34 10.5 0 1.8 2 0 0 2 2 2 0 FAM176 family | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:82583-83206 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~82583-83206 NUC205 PF08168.6 g126605.t1 - 0.19 11.1 0.6 21 4.5 0 2.4 2 0 0 2 2 2 0 NUC205 domain | Ref_seq=scaffold2800_contigs=1, transcript_loc=scaffold2800_contigs=1:32485-33122 Augustus predicted protein sequence Tobacco scaffold2800_contigs=1~32485-33122 DUF2207 PF09972.4 g24665.t1 - 1.7 7.1 5.9 1.4 7.4 4.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:391606-391989 Augustus predicted protein sequence Tobacco scaffold674_contigs=5~391606-391989 VGCC_beta4Aa_N PF12052.3 g40979.t1 - 0.065 13.1 0.8 0.1 12.4 0.6 1.3 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:320891-321921 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~320891-321921 Seryl_tRNA_N PF02403.17 g58294.t1 - 0.009 16 16.5 0.038 13.9 8.5 2.7 2 1 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:27674-28441 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~27674-28441 Myosin_tail_1 PF01576.14 g95369.t1 - 0.000018 22.7 12.4 0.000018 22.7 8.6 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:314664-315137 Augustus predicted protein sequence Tobacco scaffold2057_contigs=11~314664-315137 zf-CCHC PF00098.18 g114077.t1 - 0.00028 20.6 0.8 0.00049 19.8 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:196820-197488 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~196820-197488 V_ATPase_I PF01496.14 g107191.t1 - 0.0069 14.3 0.3 0.0083 14 0.2 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:865568-866915 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~865568-866915 SLEI_Leptospira PF07620.6 g47098.t1 - 0.066 13 0 0.12 12.1 0 1.5 1 0 0 1 1 1 0 SLEI | Ref_seq=scaffold1087_contigs=6, transcript_loc=scaffold1087_contigs=6:14095-14316 Augustus predicted protein sequence Tobacco scaffold1087_contigs=6~14095-14316 DUF1985 PF09331.6 g31681.t1 - 0.011 15.6 0 0.025 14.3 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:76423-81477 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~76423-81477 UBN2_2 PF14227.1 g110524.t1 - 0.053 13 0 0.19 11.3 0 1.8 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2559_contigs=11, transcript_loc=scaffold2559_contigs=11:75482-76846 Augustus predicted protein sequence Tobacco scaffold2559_contigs=11~75482-76846 P53_TAD PF08563.6 g73682.t1 - 1.9 7.5 11.3 5.2 6.2 0.7 3.3 3 0 0 3 3 3 0 P53 transactivation motif | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:186975-187582 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~186975-187582 DUF4591 PF15261.1 g66741.t1 - 0.12 12.6 0.3 0.2 11.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4591) | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:566916-567892 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~566916-567892 ATHILA PF03078.10 g53229.t1 - 0.00048 18.8 0 0.00049 18.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:40908-41126 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~40908-41126 Nop14 PF04147.7 g56773.t1 - 1.5 6.6 14.2 1.2 6.9 9.8 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:802605-802973 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~802605-802973 ERG2_Sigma1R PF04622.7 g7368.t1 - 0.061 12.5 0 0.13 11.5 0 1.5 2 0 0 2 2 2 0 ERG2 and Sigma1 receptor like protein | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:128630-129121 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~128630-129121 RVT_3 PF13456.1 g47709.t1 - 0.0016 18.1 0.1 0.1 12.4 0 2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:599805-600062 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~599805-600062 DUF694 PF05107.7 g97023.t1 - 0.11 11.7 2 0.15 11.2 1.4 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF694) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:340371-341575 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~340371-341575 GP46 PF07409.7 g35231.t1 - 0.096 12 0 0.13 11.5 0 1.3 1 1 0 1 1 1 0 Phage protein GP46 | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:233363-233845 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~233363-233845 CENP-R PF06729.7 g47517.t1 - 0.0026 17.4 4.1 0.0032 17.1 2.8 1.2 1 0 0 1 1 1 1 Kinetochore component, CENP-R | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:156268-156600 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~156268-156600 Delta_lysin PF05372.6 g130025.t1 - 0.036 13.4 0.1 0.061 12.6 0 1.2 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold3333_contigs=1, transcript_loc=scaffold3333_contigs=1:530-976 Augustus predicted protein sequence Tobacco scaffold3333_contigs=1~530-976 DUF3196 PF11428.3 g20071.t1 - 0.077 12.2 0 0.091 12 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3196) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:42088-42507 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~42088-42507 TcpA PF05946.7 g23129.t1 - 0.0032 17.3 0 0.0036 17.1 0 1.1 1 0 0 1 1 1 1 Toxin-coregulated pilus subunit TcpA | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:213132-213720 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~213132-213720 DUF1347 PF07079.6 g102890.t1 - 0.012 13.8 0.4 0.02 13.1 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:117705-118439 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~117705-118439 Hydrolase_like2 PF13246.1 g3330.t1 - 0.14 12.1 0.2 0.19 11.7 0.1 1.2 1 0 0 1 1 1 0 Putative hydrolase of sodium-potassium ATPase alpha subunit | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:37416-37652 Augustus predicted protein sequence Tobacco scaffold230_contigs=2~37416-37652 Herpes_UL46 PF03387.9 g117781.t1 - 0.0026 16 0 0.003 15.8 0 1.1 1 0 0 1 1 1 1 Herpesvirus UL46 protein | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:84736-85182 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~84736-85182 CCDC144C PF14915.1 g45314.t1 - 0.052 12.4 2.8 0.061 12.2 1.9 1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:176898-177134 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~176898-177134 DUF1725 PF08333.6 g32714.t1 - 0.082 12.2 1 0.16 11.3 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:744860-745649 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~744860-745649 Se-cys_synth_N PF12390.3 g60732.t1 - 0.00066 19.7 0 1 9.4 0 2.2 2 0 0 2 2 2 2 Selenocysteine synthase N terminal | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:53790-54467 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~53790-54467 SnoaL_3 PF13474.1 g1869.t1 - 0.094 12.7 0 0.1 12.6 0 1.1 1 0 0 1 1 1 0 SnoaL-like domain | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:88840-89636 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~88840-89636 zf-CCHC PF00098.18 g17971.t1 - 0.026 14.4 0.2 0.061 13.2 0.1 1.7 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:92659-93577 Augustus predicted protein sequence Tobacco scaffold540_contigs=6~92659-93577 MarR_2 PF12802.2 g64820.t1 - 0.086 12.5 0.1 0.11 12.2 0.1 1.3 1 1 0 1 1 1 0 MarR family | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:64432-65182 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~64432-65182 CENP-F_leu_zip PF10473.4 g26615.t1 - 0.0076 16.1 7 0.016 15 4.2 1.8 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:33713-34161 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~33713-34161 YmdB PF13277.1 g54976.t1 - 0.11 11.5 0 0.12 11.3 0 1 1 0 0 1 1 1 0 YmdB-like protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:282707-282925 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~282707-282925 Img2 PF05046.9 g56607.t1 - 0.078 13.2 0 0.097 12.9 0 1.2 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:454405-454656 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~454405-454656 Propep_M14 PF02244.11 g69989.t1 - 0.027 14.1 0.1 0.9 9.2 0.1 2.4 2 0 0 2 2 2 0 Carboxypeptidase activation peptide | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:44016-44844 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~44016-44844 Med9 PF07544.8 g114122.t1 - 0.017 14.8 2.3 0.87 9.3 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:309461-309811 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~309461-309811 PBP1_TM PF14812.1 g70601.t1 - 0.008 16.4 0.8 0.013 15.7 0.6 1.5 1 0 0 1 1 1 1 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:602109-602673 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~602109-602673 Nop14 PF04147.7 g85031.t1 - 0.013 13.5 9.1 0.015 13.2 6.3 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:59869-62110 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~59869-62110 UBN2 PF14223.1 g95708.t1 - 0.027 14.2 0 0.086 12.6 0 1.9 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:153770-154147 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~153770-154147 Nodulin PF02451.10 g61244.t1 - 0.081 12.3 0.1 0.082 12.3 0 1.1 1 0 0 1 1 1 0 Nodulin | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:4536-4871 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~4536-4871 RSF PF14876.1 g103727.t1 - 0.091 11.5 0.3 4.5 5.9 0 2 1 1 0 2 2 2 0 Respiratory growth transcriptional regulator | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:17323-18009 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~17323-18009 ATHILA PF03078.10 g101641.t1 - 0.097 11.2 0 0.099 11.2 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2216_contigs=4, transcript_loc=scaffold2216_contigs=4:7396-7659 Augustus predicted protein sequence Tobacco scaffold2216_contigs=4~7396-7659 EF_assoc_2 PF08356.7 g66756.t1 - 0.16 11.7 0.1 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 EF hand associated | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:629317-630293 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~629317-630293 Chordopox_A35R PF05989.7 g46387.t1 - 0.056 13 0.1 0.059 12.9 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus A35R protein | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:291671-291973 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~291671-291973 DUF1686 PF07937.6 g4836.t1 - 0.097 12.3 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1686) | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:153234-153563 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~153234-153563 TM2 PF05154.11 g46718.t1 - 0.0088 16.2 0.1 9.6 6.5 0 2.9 2 2 0 2 2 2 2 TM2 domain | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:23587-24084 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~23587-24084 Chromo PF00385.19 g114089.t1 - 0.0000046 26.2 0 0.0000087 25.3 0 1.5 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:217894-218804 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~217894-218804 Kelch_3 PF13415.1 g41736.t1 - 3.6 7.8 8.6 8.7 6.6 0.9 2.2 2 0 0 2 2 2 0 Galactose oxidase, central domain | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:112839-113090 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~112839-113090 UBN2 PF14223.1 g54996.t1 - 0.026 14.2 0 0.028 14.1 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:321661-321879 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~321661-321879 Chromadorea_ALT PF05535.7 g68444.t1 - 0.036 14.1 0 0.049 13.7 0 1.2 1 0 0 1 1 1 0 Chromadorea ALT protein | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:49088-49420 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~49088-49420 MLTD_N PF06474.7 g94199.t1 - 0.02 15.1 1.4 0.71 10.1 0 2.9 3 0 0 3 3 3 0 MltD lipid attachment motif | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:170201-170548 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~170201-170548 IDO PF01231.13 g67513.t1 - 0.046 12.1 0.1 0.075 11.4 0.1 1.3 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:14172-15605 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~14172-15605 DUF4404 PF14357.1 g103204.t1 - 0.4 11.1 3.5 0.98 9.8 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:133320-133667 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~133320-133667 Transgly PF00912.17 g69259.t1 - 0.09 12 0 0.12 11.7 0 1.2 1 0 0 1 1 1 0 Transglycosylase | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:88299-89169 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~88299-89169 NUDIX_4 PF14815.1 g108785.t1 - 0.0077 15.6 0 0.0078 15.6 0 1.1 1 0 0 1 1 1 1 NUDIX domain | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:221108-221425 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~221108-221425 DUF523 PF04463.7 g65836.t1 - 0.12 12 0 0.14 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF523) | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:206239-206857 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~206239-206857 Ank_2 PF12796.2 g78328.t1 - 0.00000067 29.5 0.3 0.0000011 28.8 0.2 1.4 1 0 0 1 1 1 1 Ankyrin repeats (3 copies) | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:447313-448952 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~447313-448952 Lipase_GDSL_3 PF14606.1 g109175.t1 - 0.13 11.9 0 1.7 8.3 0 2 1 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:213297-213611 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~213297-213611 QLQ PF08880.6 g7112.t1 - 0.35 10.3 0.2 0.35 10.3 0.1 2.3 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:82680-82907 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~82680-82907 GP46 PF07409.7 g1258.t1 - 0.0098 15.2 0.5 0.92 8.8 0.1 2.5 1 1 0 2 2 2 2 Phage protein GP46 | Ref_seq=scaffold142_contigs=6, transcript_loc=scaffold142_contigs=6:15694-17434 Augustus predicted protein sequence Tobacco scaffold142_contigs=6~15694-17434 IFT57 PF10498.4 g5169.t1 - 0.00093 18 0.3 0.0011 17.7 0.2 1.3 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:52681-53139 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~52681-53139 PBP1_TM PF14812.1 g2796.t1 - 0.15 12.3 0.6 0.21 11.9 0.4 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:160495-160839 Augustus predicted protein sequence Tobacco scaffold218_contigs=4~160495-160839 Inhibitor_I71 PF12628.2 g59928.t1 - 0.042 13.5 0.4 0.045 13.4 0.3 1.1 1 0 0 1 1 1 0 Falstatin, cysteine peptidase inhibitor | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:194307-194633 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~194307-194633 KASH PF10541.4 g106500.t1 - 0.038 13.8 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Nuclear envelope localisation domain | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:87184-87513 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~87184-87513 Apc5 PF12862.2 g115704.t1 - 0.13 12.1 0 0.16 11.8 0 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:89834-90617 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~89834-90617 SlyX PF04102.7 g49095.t1 - 0.002 18.4 1.5 0.002 18.4 1.1 1.5 2 0 0 2 2 2 1 SlyX | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:213176-213430 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~213176-213430 bZIP_2 PF07716.10 g36154.t1 - 0.026 14.3 1.6 0.026 14.3 1.1 1.7 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:393832-394552 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~393832-394552 Matrilin_ccoil PF10393.4 g109561.t1 - 0.018 14.3 0 0.026 13.8 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold2513_contigs=2, transcript_loc=scaffold2513_contigs=2:1-231 Augustus predicted protein sequence Tobacco scaffold2513_contigs=2~1-231 YicC_N PF03755.8 g102781.t1 - 0.074 12.9 0 0.088 12.7 0 1 1 0 0 1 1 1 0 YicC-like family, N-terminal region | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:15469-17155 Augustus predicted protein sequence Tobacco scaffold2268_contigs=6~15469-17155 ATHILA PF03078.10 g104925.t1 - 0.0086 14.7 0 0.014 14 0 1.3 1 1 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:104691-105309 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~104691-105309 IIGP PF05049.8 g65337.t1 - 0.075 11.8 0.2 0.078 11.7 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:59332-59727 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~59332-59727 DUF3029 PF11230.3 g34243.t1 - 0.066 11.3 0 0.077 11.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:90029-90472 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~90029-90472 WHH PF14414.1 g130502.t1 - 0.094 11.9 1.4 0.16 11.2 1 1.4 1 0 0 1 1 1 0 A nuclease of the HNH/ENDO VII superfamily with conserved WHH | Ref_seq=scaffold4746_contigs=1, transcript_loc=scaffold4746_contigs=1:24-323 Augustus predicted protein sequence Tobacco scaffold4746_contigs=1~24-323 DUF4219 PF13961.1 g44959.t1 - 0.0024 17.2 0.4 0.0048 16.2 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:98152-99333 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~98152-99333 WHEP-TRS PF00458.15 g28923.t1 - 0.12 12 1.4 0.21 11.3 1 1.3 1 0 0 1 1 1 0 WHEP-TRS domain | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:8617-9176 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~8617-9176 zf-TAZ PF02135.11 g118201.t1 - 0.0015 18.5 1.1 0.0057 16.6 0.7 1.7 1 1 0 1 1 1 1 TAZ zinc finger | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:51312-52110 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~51312-52110 DUF1832 PF08870.6 g118278.t1 - 0.12 12 0 0.18 11.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1832) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:272805-273269 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~272805-273269 End3 PF12761.2 g110350.t1 - 0.0031 17.1 0.5 0.0041 16.7 0.3 1.2 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:419670-421217 Augustus predicted protein sequence Tobacco scaffold2538_contigs=14~419670-421217 FAD_binding_9 PF08021.6 g7047.t1 - 0.081 12.8 0 0.088 12.7 0 1.2 1 0 0 1 1 1 0 Siderophore-interacting FAD-binding domain | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:100840-101091 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~100840-101091 Spore_SspJ PF09575.5 g53814.t1 - 0.11 12.7 0.1 0.16 12.2 0.1 1.3 1 0 0 1 1 1 0 Small spore protein J (Spore_SspJ) | Ref_seq=scaffold1192_contigs=4, transcript_loc=scaffold1192_contigs=4:80333-80617 Augustus predicted protein sequence Tobacco scaffold1192_contigs=4~80333-80617 FRG1 PF06229.7 g6066.t1 - 0.71 9.2 4.1 0.99 8.8 2.8 1.2 1 0 0 1 1 1 0 FRG1-like family | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:37766-38590 Augustus predicted protein sequence Tobacco scaffold291_contigs=11~37766-38590 Ehbp PF10622.4 g121058.t1 - 0.059 13.3 0 0.09 12.7 0 1.3 1 0 0 1 1 1 0 Energy-converting hydrogenase B subunit P (EhbP) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:290676-290975 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~290676-290975 FGF-BP1 PF06473.7 g129802.t1 - 0.049 13.2 0.8 0.058 12.9 0.5 1.1 1 0 0 1 1 1 0 FGF binding protein 1 (FGF-BP1) | Ref_seq=scaffold3072_contigs=1, transcript_loc=scaffold3072_contigs=1:1402-1844 Augustus predicted protein sequence Tobacco scaffold3072_contigs=1~1402-1844 PsbP PF01789.11 g11761.t1 - 0.025 14 0 0.036 13.5 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:97426-98154 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~97426-98154 Colicin_C PF12106.3 g17668.t1 - 0.017 14.7 1.1 0.017 14.7 0.7 2.8 3 0 0 3 3 3 0 Colicin C terminal ribonuclease domain | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:53239-53517 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~53239-53517 PRTase_2 PF15609.1 g86412.t1 - 0.03 13.6 0 0.034 13.4 0 1.1 1 0 0 1 1 1 0 Phosphoribosyl transferase | Ref_seq=scaffold1848_contigs=19, transcript_loc=scaffold1848_contigs=19:129723-130034 Augustus predicted protein sequence Tobacco scaffold1848_contigs=19~129723-130034 GcrA PF07750.6 g35705.t1 - 0.043 13.9 0.8 0.053 13.7 0.6 1.2 1 1 0 1 1 1 0 GcrA cell cycle regulator | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:153654-153860 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~153654-153860 Crust_neurohorm PF01147.12 g38285.t1 - 0.1 11.9 0.1 0.32 10.3 0 1.8 1 1 1 2 2 2 0 Crustacean CHH/MIH/GIH neurohormone family | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:206321-206801 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~206321-206801 BCL_N PF04714.8 g120122.t1 - 4.3 7 6.6 0.39 10.3 0.3 2.3 2 1 1 3 3 3 0 BCL7, N-terminal conserver region | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:75515-77325 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~75515-77325 Elf1 PF05129.8 g61304.t1 - 0.0071 16 0.1 0.011 15.3 0 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:137967-139490 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~137967-139490 YdjO PF14169.1 g38268.t1 - 0.12 11.8 0 0.19 11.2 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:119151-119462 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~119151-119462 FARP PF01581.11 g129060.t1 - 0.27 11.6 1.9 0.74 10.3 1.3 1.8 1 0 0 1 1 1 0 FMRFamide related peptide family | Ref_seq=scaffold2913_contigs=1, transcript_loc=scaffold2913_contigs=1:12482-12946 Augustus predicted protein sequence Tobacco scaffold2913_contigs=1~12482-12946 Red1 PF07964.6 g26346.t1 - 0.74 7.9 5.2 0.92 7.5 3.6 1.2 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:146110-147237 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~146110-147237 uDENN PF03456.13 g120349.t1 - 0.13 12.2 2.6 0.55 10.2 0.1 2.1 1 1 1 2 2 2 0 uDENN domain | Ref_seq=scaffold2723_contigs=6, transcript_loc=scaffold2723_contigs=6:8310-8615 Augustus predicted protein sequence Tobacco scaffold2723_contigs=6~8310-8615 TC1 PF15063.1 g50541.t1 - 0.017 14.6 0 0.047 13.2 0 1.7 1 0 0 1 1 1 0 Thyroid cancer protein 1 | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:263735-264838 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~263735-264838 PAS_8 PF13188.1 g35976.t1 - 0.0021 17.8 0 3.2 7.7 0 2.4 2 0 0 2 2 2 2 PAS domain | Ref_seq=scaffold879_contigs=9, transcript_loc=scaffold879_contigs=9:15065-17128 Augustus predicted protein sequence Tobacco scaffold879_contigs=9~15065-17128 MORN_2 PF07661.8 g91754.t1 - 0.062 13.3 0.3 14 6.1 0 2.8 3 0 0 3 3 3 0 MORN repeat variant | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:58381-58623 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~58381-58623 T4_Gp59_C PF08994.5 g115681.t1 - 0.099 12.8 0 0.15 12.2 0 1.2 1 0 0 1 1 1 0 T4 gene Gp59 loader of gp41 DNA helicase C-term | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:36001-36554 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~36001-36554 Pyr_redox PF00070.22 g87750.t1 - 0.073 13.4 0.1 0.24 11.8 0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:109593-110171 Augustus predicted protein sequence Tobacco scaffold1896_contigs=29~109593-110171 TRH PF05438.7 g58937.t1 - 0.01 15.2 0 0.017 14.4 0 1.3 1 0 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:261295-261834 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~261295-261834 V-set PF07686.12 g59985.t1 - 0.14 12 0 0.17 11.8 0 1.1 1 0 0 1 1 1 0 Immunoglobulin V-set domain | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:1829-2130 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~1829-2130 H-kinase_dim PF02895.9 g117731.t1 - 0.027 14.8 0.1 0.066 13.5 0 1.6 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:119336-122052 Augustus predicted protein sequence Tobacco scaffold2693_contigs=8~119336-122052 Tospo_nucleocap PF01533.11 g109026.t1 - 0.049 12.8 0.6 0.063 12.5 0.4 1.2 1 0 0 1 1 1 0 Tospovirus nucleocapsid protein | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:670-4671 Augustus predicted protein sequence Tobacco scaffold2473_contigs=16~670-4671 HGTP_anticodon PF03129.15 g124343.t1 - 0.03 14.2 0.1 0.051 13.5 0.1 1.4 1 0 0 1 1 1 0 Anticodon binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1965378-1965710 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1965378-1965710 FlaC_arch PF05377.6 g20107.t1 - 0.14 12.1 0.2 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:81230-81738 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~81230-81738 DUF2625 PF10946.3 g71848.t1 - 0.13 11.2 0 0.15 11 0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF2625 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:202854-204069 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~202854-204069 Gp_UL130 PF11668.3 g14850.t1 - 0.087 12.3 0 0.1 12.1 0 1.1 1 0 0 1 1 1 0 HCMV glycoprotein pUL130 | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:59675-60013 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~59675-60013 MCH PF02289.11 g127753.t1 - 0.014 14.4 0.3 0.016 14.2 0.2 1.1 1 0 0 1 1 1 0 Cyclohydrolase (MCH) | Ref_seq=scaffold2835_contigs=1, transcript_loc=scaffold2835_contigs=1:41378-43316 Augustus predicted protein sequence Tobacco scaffold2835_contigs=1~41378-43316 DUF2510 PF10708.4 g72470.t1 - 0.033 13.6 0.1 0.051 13 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2510) | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:46581-47640 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~46581-47640 Ery_res_leader1 PF08051.6 g37960.t1 - 0.46 10.2 2.5 12 5.7 0.2 2.6 2 0 0 2 2 2 0 Erythromycin resistance leader peptide | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:350107-354006 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~350107-354006 GTPase_binding PF09027.5 g53826.t1 - 0.076 12.6 0 0.1 12.1 0 1.3 1 0 0 1 1 1 0 GTPase binding | Ref_seq=scaffold1192_contigs=4, transcript_loc=scaffold1192_contigs=4:97220-97489 Augustus predicted protein sequence Tobacco scaffold1192_contigs=4~97220-97489 IFP_35_N PF07334.8 g120198.t1 - 0.0054 16.6 1 0.014 15.3 0.7 1.6 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:239636-240070 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~239636-240070 MHCassoc_trimer PF08831.5 g72928.t1 - 0.13 12 0.8 0.31 10.9 0.5 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:55308-56099 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~55308-56099 DBD_Tnp_Mut PF03108.10 g7458.t1 - 0.000000039 32.7 0.3 0.000000091 31.5 0 1.8 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:134624-135245 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~134624-135245 ODC_AZ PF02100.12 g107799.t1 - 0.0023 17.4 0 0.0039 16.6 0 1.4 1 0 0 1 1 1 1 Ornithine decarboxylase antizyme | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:128953-131000 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~128953-131000 Retrotrans_gag PF03732.12 g2554.t1 - 0.015 15.3 0 0.025 14.6 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:233923-234477 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~233923-234477 A2M PF00207.17 g21360.t1 - 0.048 13.2 0 0.089 12.3 0 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:241848-243458 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~241848-243458 Prenyltransf PF01255.14 g33591.t1 - 0.039 13 0 0.042 12.9 0 1.1 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:126181-127106 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~126181-127106 BphX PF06139.7 g60417.t1 - 0.11 12.1 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 BphX-like | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:84836-85081 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~84836-85081 Ycf1 PF05758.7 g46805.t1 - 0.77 7.4 12.5 0.73 7.4 8.7 1 1 0 0 1 1 1 0 Ycf1 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:175997-176422 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~175997-176422 hNIFK_binding PF12196.3 g124639.t1 - 0.19 11.1 0.8 18 4.8 0 2.4 2 0 0 2 2 2 0 FHA Ki67 binding domain of hNIFK | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:181821-182770 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~181821-182770 SBP_bac_7 PF03480.8 g127865.t1 - 0.0099 15 0 0.01 14.9 0 1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:7449-7712 Augustus predicted protein sequence Tobacco scaffold2840_contigs=1~7449-7712 CENP-F_leu_zip PF10473.4 g95275.t1 - 0.0027 17.5 5.4 0.011 15.6 3.4 1.9 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:490960-491441 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~490960-491441 DUF1515 PF07439.6 g8710.t1 - 0.47 10.2 2.4 1.4 8.7 0.3 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:48071-48394 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~48071-48394 DUF972 PF06156.8 g78011.t1 - 0.0057 16.9 0.5 0.0057 16.9 0.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF972) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:217814-218062 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~217814-218062 GnsAB PF08178.6 g2493.t1 - 0.11 12.2 0.2 0.26 10.9 0 1.8 2 0 0 2 2 2 0 GnsA/GnsB family | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:119640-122345 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~119640-122345 UBN2 PF14223.1 g37088.t1 - 0.03 14 0.6 0.43 10.3 0 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:87855-88310 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~87855-88310 Retrotrans_gag PF03732.12 g65493.t1 - 0.028 14.4 0 0.045 13.8 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:37174-37843 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~37174-37843 Reo_sigmaC PF04582.7 g10070.t1 - 0.097 11.8 0.5 0.097 11.8 0.3 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:42512-42823 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~42512-42823 DNA_PPF PF02916.10 g34633.t1 - 0.076 13 0 0.091 12.8 0 1.2 1 0 0 1 1 1 0 DNA polymerase processivity factor | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:116686-116979 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~116686-116979 Tropomyosin PF00261.15 g67508.t1 - 0.014 14.5 2.3 0.014 14.5 1.6 1.6 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:7337-7693 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~7337-7693 DUF3012 PF11216.3 g3612.t1 - 0.13 11.9 0.3 0.38 10.4 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3012) | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:108407-108631 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~108407-108631 DUF1395 PF07160.7 g62948.t1 - 0.052 13 0.6 2 7.8 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:78168-78965 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~78168-78965 Prog_receptor PF02161.10 g15465.t1 - 0.11 11.3 1.4 0.14 10.9 0.9 1.1 1 0 0 1 1 1 0 Progesterone receptor | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:402668-403108 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~402668-403108 MNSV_P7B PF06692.6 g127751.t1 - 0.002 17.8 0.9 0.002 17.8 0.6 1.9 1 1 1 2 2 2 1 Melon necrotic spot virus P7B protein | Ref_seq=scaffold2835_contigs=1, transcript_loc=scaffold2835_contigs=1:31494-32596 Augustus predicted protein sequence Tobacco scaffold2835_contigs=1~31494-32596 Cupin_2 PF07883.6 g72463.t1 - 0.091 12.2 0 0.19 11.2 0 1.5 1 0 0 1 1 1 0 Cupin domain | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:35495-36768 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~35495-36768 DBC1 PF14443.1 g30451.t1 - 0.0069 15.8 0.2 0.032 13.7 0.1 1.9 1 1 1 2 2 2 1 DBC1 | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:841650-842036 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~841650-842036 HTH_Tnp_Mu_2 PF09039.6 g87662.t1 - 0.017 14.8 0.2 0.018 14.7 0.1 1.1 1 0 0 1 1 1 0 Mu DNA binding, I gamma subdomain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:6186-6395 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~6186-6395 HALZ PF02183.13 g110644.t1 - 0.0067 16.1 4.2 0.64 9.7 0.2 2.4 2 0 0 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:157443-157937 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~157443-157937 FMN_red PF03358.10 g35764.t1 - 0.063 12.7 0.2 0.071 12.6 0.1 1.2 1 0 0 1 1 1 0 NADPH-dependent FMN reductase | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:347308-347589 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~347308-347589 CDC45 PF02724.9 g56477.t1 - 0.014 13.4 13.5 0.02 12.9 9.3 1.3 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:227141-227962 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~227141-227962 zf-CCHC_6 PF15288.1 g89287.t1 - 0.049 13.3 0.2 0.093 12.4 0.2 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:226484-227600 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~226484-227600 DUF3689 PF12463.3 g129705.t1 - 0.061 12.1 0.6 2.9 6.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3689) | Ref_seq=scaffold3029_contigs=1, transcript_loc=scaffold3029_contigs=1:1-717 Augustus predicted protein sequence Tobacco scaffold3029_contigs=1~1-717 KN_motif PF12075.3 g99833.t1 - 0.32 10.8 13.9 11 5.8 0.5 4.5 4 0 0 4 4 4 0 KN motif | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:95402-95934 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~95402-95934 Daxx PF03344.10 g47116.t1 - 0.0011 17.6 4.5 0.0011 17.6 3.1 1.1 1 0 0 1 1 1 1 Daxx Family | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:50282-50794 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~50282-50794 Retrotrans_gag PF03732.12 g99059.t1 - 0.091 12.8 0 0.16 12 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2168_contigs=4, transcript_loc=scaffold2168_contigs=4:72694-73789 Augustus predicted protein sequence Tobacco scaffold2168_contigs=4~72694-73789 CAF-1_p150 PF11600.3 g51079.t1 - 6.9 5.9 25.2 8.2 5.7 17.4 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:63402-63686 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~63402-63686 RVT_3 PF13456.1 g55258.t1 - 0.00000016 30.9 0 0.00000022 30.5 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:275134-275499 Augustus predicted protein sequence Tobacco scaffold1216_contigs=10~275134-275499 Imm37 PF15598.1 g15951.t1 - 0.096 12.5 0.1 0.17 11.7 0 1.3 1 0 0 1 1 1 0 Immunity protein 37 | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:162382-163832 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~162382-163832 Secretin_N_2 PF07655.8 g82814.t1 - 0.09 13.1 0.2 0.1 13 0.1 1.1 1 0 0 1 1 1 0 Secretin N-terminal domain | Ref_seq=scaffold1769_contigs=11, transcript_loc=scaffold1769_contigs=11:37734-38199 Augustus predicted protein sequence Tobacco scaffold1769_contigs=11~37734-38199 EPO_TPO PF00758.13 g42513.t1 - 0.05 13.2 0 0.083 12.5 0 1.4 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:42530-43018 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~42530-43018 Hepatitis_core PF00906.15 g99800.t1 - 0.063 12.9 0.5 0.086 12.4 0.4 1.2 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:28235-28693 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~28235-28693 SH3_7 PF12914.2 g8785.t1 - 0.14 11.9 0.1 0.22 11.3 0 1.2 1 0 0 1 1 1 0 SH3 domain of SH3b2 type | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:177667-182355 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~177667-182355 DivIVA PF05103.8 g77014.t1 - 0.58 10.2 4.1 0.14 12.1 0.4 1.7 2 0 0 2 2 2 0 DivIVA protein | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:15712-16472 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~15712-16472 Reo_sigmaC PF04582.7 g63754.t1 - 0.000053 22.5 0.1 0.000065 22.2 0 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:285528-287337 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~285528-287337 ATHILA PF03078.10 g18424.t1 - 0.00000016 30.3 0 0.000015 23.7 0 2.4 2 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:62961-63880 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~62961-63880 DUF1347 PF07079.6 g11760.t1 - 0.041 12.1 0 0.048 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:96741-97202 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~96741-97202 ACOX PF01756.14 g1417.t1 - 0.1 11.9 0 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Acyl-CoA oxidase | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:87006-87688 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~87006-87688 Ctf8 PF09696.5 g69708.t1 - 0.029 14.1 0 0.034 13.9 0 1.1 1 0 0 1 1 1 0 Ctf8 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:961344-962464 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~961344-962464 CENP-U PF13097.1 g83600.t1 - 0.0024 17.8 0.1 0.0024 17.8 0 1 1 0 0 1 1 1 1 CENP-A nucleosome associated complex (NAC) subunit | Ref_seq=scaffold1797_contigs=4, transcript_loc=scaffold1797_contigs=4:89891-90958 Augustus predicted protein sequence Tobacco scaffold1797_contigs=4~89891-90958 zf-CCHC PF00098.18 g76994.t1 - 0.000033 23.5 1.2 0.000052 22.9 0.8 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:45013-45213 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~45013-45213 DUF3490 PF11995.3 g56780.t1 - 0.11 12 0 0.2 11.2 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3490) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:811223-811874 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~811223-811874 Red1 PF07964.6 g19270.t1 - 0.051 11.7 0.3 0.053 11.6 0.2 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:115368-115610 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~115368-115610 DUF2703 PF10865.3 g127077.t1 - 0.044 13.7 0.3 0.073 12.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) | Ref_seq=scaffold2813_contigs=1, transcript_loc=scaffold2813_contigs=1:13363-13809 Augustus predicted protein sequence Tobacco scaffold2813_contigs=1~13363-13809 HTH_22 PF13309.1 g59678.t1 - 0.1 12.3 0 0.17 11.6 0 1.4 1 0 0 1 1 1 0 HTH domain | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:75378-75734 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~75378-75734 DUF4232 PF14016.1 g105149.t1 - 0.0013 18.4 2.6 0.44 10.2 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF4232) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:409374-410010 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~409374-410010 DUF4608 PF15381.1 g20515.t1 - 0.018 15.1 5.6 0.41 10.8 1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:404177-404485 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~404177-404485 MHCassoc_trimer PF08831.5 g107389.t1 - 0.036 13.9 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1263002-1263361 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1263002-1263361 Minor_capsid_3 PF12691.2 g77659.t1 - 0.026 14.2 0 0.031 13.9 0 1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold1636_contigs=5, transcript_loc=scaffold1636_contigs=5:4249-4577 Augustus predicted protein sequence Tobacco scaffold1636_contigs=5~4249-4577 SRP_SPB PF02978.14 g5860.t1 - 0.08 13.2 0.1 4.3 7.6 0 2.1 1 1 1 2 2 2 0 Signal peptide binding domain | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:101407-101965 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~101407-101965 DUF3086 PF11285.3 g114760.t1 - 0.043 12.6 0.1 0.047 12.5 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:59336-62451 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~59336-62451 Reprolysin_5 PF13688.1 g124135.t1 - 0.1 12.4 0.5 0.11 12.3 0.3 1 1 0 0 1 1 1 0 Metallo-peptidase family M12 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1418016-1418231 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1418016-1418231 CUB_2 PF02408.15 g101382.t1 - 0.33 10.4 2.1 0.53 9.8 1.5 1.3 1 0 0 1 1 1 0 CUB-like domain | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:142143-143636 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~142143-143636 Bunya_NS-S PF01104.12 g110654.t1 - 0.15 11.5 0.5 3.1 7.3 0 2.4 1 1 1 2 2 2 0 Bunyavirus non-structural protein NS-s | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:191963-192349 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~191963-192349 NPFF PF15085.1 g104790.t1 - 0.089 13 0 0.1 12.9 0 1.2 1 0 0 1 1 1 0 Neuropeptide FF | Ref_seq=scaffold2344_contigs=6, transcript_loc=scaffold2344_contigs=6:3175-3435 Augustus predicted protein sequence Tobacco scaffold2344_contigs=6~3175-3435 zf-RVT PF13966.1 g122034.t1 - 0.000000094 32.2 0.1 0.0000023 27.8 0 2.1 2 0 0 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:47212-48076 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~47212-48076 DUF1412 PF07203.6 g48783.t1 - 0.088 12.7 0.2 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1412) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:343729-344049 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~343729-344049 PQ-loop PF04193.9 g49713.t1 - 0.032 13.7 0.6 2.1 7.9 0 2.3 2 0 0 2 2 2 0 PQ loop repeat | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:95277-95740 Augustus predicted protein sequence Tobacco scaffold1132_contigs=4~95277-95740 Borrelia_rep PF03183.8 g93311.t1 - 0.35 10.7 1.6 0.56 10 1.1 1.4 1 0 0 1 1 1 0 Borrelia repeat protein | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:22058-22443 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~22058-22443 DUF1985 PF09331.6 g50465.t1 - 0.000000018 34.2 0 0.00000002 34.1 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:12219-13063 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~12219-13063 DBD_Tnp_Mut PF03108.10 g15919.t1 - 0.000000056 32.2 4.5 0.00000011 31.2 3.1 1.6 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:82918-83397 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~82918-83397 RFX_DNA_binding PF02257.10 g65915.t1 - 0.19 11.9 2.4 2.6 8.2 0.1 2.3 2 0 0 2 2 2 0 RFX DNA-binding domain | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:57862-58461 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~57862-58461 Pollen_allerg_1 PF01357.16 g88296.t1 - 0.077 12.8 0.2 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 Pollen allergen | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:27505-28101 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~27505-28101 DUF3626 PF12294.3 g60251.t1 - 0.099 11.6 0 0.12 11.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3626) | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:34650-34946 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~34650-34946 Trypan_PARP PF05887.6 g107461.t1 - 0.88 9.3 10.5 0.91 9.3 7.3 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:57371-57604 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~57371-57604 DBD_Tnp_Mut PF03108.10 g113481.t1 - 0.015 14.8 0.3 0.025 14.1 0.2 1.4 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:116394-116741 Augustus predicted protein sequence Tobacco scaffold2632_contigs=8~116394-116741 HTH_Tnp_Tc3_2 PF01498.13 g83742.t1 - 0.19 11.7 4.3 8.6 6.4 0 3.3 3 0 0 3 3 3 0 Transposase | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:154106-155714 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~154106-155714 Dishevelled PF02377.10 g59338.t1 - 0.12 12.6 0.1 23 5.2 0 2.3 2 0 0 2 2 2 0 Dishevelled specific domain | Ref_seq=scaffold1289_contigs=4, transcript_loc=scaffold1289_contigs=4:27913-28932 Augustus predicted protein sequence Tobacco scaffold1289_contigs=4~27913-28932 Trehalase PF01204.13 g116319.t1 - 0.16 10.5 1.2 0.17 10.4 0.8 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:79428-79724 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~79428-79724 DUF1719 PF08224.6 g16738.t1 - 0.12 11.4 0.6 0.17 10.9 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:268711-269841 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~268711-269841 RBP_receptor PF14752.1 g92709.t1 - 0.069 11.4 0 0.069 11.4 0 1 1 0 0 1 1 1 0 Retinol binding protein receptor | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:345537-346391 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~345537-346391 Tmemb_cc2 PF10267.4 g40851.t1 - 0.11 11.1 0 0.11 11 0 1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:73461-73787 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~73461-73787 ATHILA PF03078.10 g93922.t1 - 0.000029 22.8 0 0.000053 21.9 0 1.4 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:161586-162781 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~161586-162781 Myb_DNA-bind_2 PF08914.6 g124313.t1 - 0.043 13.6 0.2 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 Rap1 Myb domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1908143-1908451 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1908143-1908451 PhaP_Bmeg PF09602.5 g54003.t1 - 0.059 13.1 0 0.059 13.1 0 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold1195_contigs=2, transcript_loc=scaffold1195_contigs=2:16823-17038 Augustus predicted protein sequence Tobacco scaffold1195_contigs=2~16823-17038 PBP1_TM PF14812.1 g30240.t1 - 0.063 13.5 1.5 0.088 13.1 0.9 1.4 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:105750-106226 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~105750-106226 HTH_25 PF13413.1 g35822.t1 - 0.0088 15.6 0.2 0.015 14.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:525484-525801 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~525484-525801 IncA PF04156.9 g89237.t1 - 0.016 14.8 0.7 0.018 14.6 0.5 1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:134729-134947 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~134729-134947 YqgF PF14639.1 g77484.t1 - 0.0004 19.9 0.2 0.78 9.2 0 2.1 1 1 1 2 2 2 2 Holliday-junction resolvase-like of SPT6 | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:164864-166013 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~164864-166013 Fb_signal PF08341.6 g113875.t1 - 0.022 14.7 0.1 0.04 13.9 0 1.4 1 0 0 1 1 1 0 Fibronectin-binding protein signal sequence | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:625433-625849 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~625433-625849 Pro-MCH PF05824.7 g24684.t1 - 0.083 12.3 0.2 0.65 9.5 0 2.2 2 1 0 2 2 2 0 Pro-melanin-concentrating hormone (Pro-MCH) | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:8141-8878 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~8141-8878 UBN2 PF14223.1 g130193.t1 - 0.000033 23.6 1.2 0.000033 23.6 0.8 2.3 2 1 1 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold3616_contigs=1, transcript_loc=scaffold3616_contigs=1:715-1217 Augustus predicted protein sequence Tobacco scaffold3616_contigs=1~715-1217 PPARgamma_N PF12577.3 g113740.t1 - 0.095 13 0 0.11 12.7 0 1.3 1 0 0 1 1 1 0 PPAR gamma N-terminal region | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:323106-323558 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~323106-323558 DUF1985 PF09331.6 g93054.t1 - 0.000053 23 0 0.000084 22.4 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:610484-611837 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~610484-611837 DUF4283 PF14111.1 g3264.t1 - 0.00015 20.9 0 0.00018 20.6 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:138365-138682 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~138365-138682 DUF116 PF01976.12 g126013.t1 - 0.12 11.7 0.5 0.17 11.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF116 | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:75116-75463 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~75116-75463 Rab5ip PF07019.7 g29534.t1 - 0.37 10.9 3.1 3.7 7.7 0.5 2.1 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:151511-151816 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~151511-151816 MGC-24 PF05283.6 g74964.t1 - 0.16 11.7 3.7 0.2 11.4 2.6 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:186564-186965 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~186564-186965 CNF1 PF05785.7 g101876.t1 - 0.01 14.7 0.2 0.013 14.4 0.1 1.1 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:92633-95152 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~92633-95152 DUF3530 PF12048.3 g24441.t1 - 0.055 12.4 2.2 0.06 12.3 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:202590-203423 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~202590-203423 Stm1_N PF09598.5 g63388.t1 - 0.19 12.4 4.2 0.26 12 2.9 1.4 1 0 0 1 1 1 0 Stm1 | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:126673-126915 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~126673-126915 FBD PF08387.5 g111490.t1 - 0.000012 24.6 0.1 0.000019 23.9 0 1.3 1 0 0 1 1 1 1 FBD | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:651304-652386 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~651304-652386 YdjO PF14169.1 g106999.t1 - 0.00031 20.1 0.1 0.005 16.2 0.1 2.3 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:320681-325212 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~320681-325212 LEM PF03020.10 g92276.t1 - 0.12 11.8 0 0.21 11 0 1.4 1 0 0 1 1 1 0 LEM domain | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:193411-195404 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~193411-195404 ENOD40 PF08247.6 g19962.t1 - 0.093 12.5 0.1 0.28 11 0.1 1.8 1 0 0 1 1 1 0 ENOD40 protein | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:125911-126342 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~125911-126342 MgtE_N PF03448.12 g123977.t1 - 0.042 14.1 0.2 0.063 13.5 0.1 1.4 1 1 0 1 1 1 0 MgtE intracellular N domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1026635-1027312 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1026635-1027312 zf-CCHC PF00098.18 g22199.t1 - 0.00000013 31.1 2.4 0.00000013 31.1 1.7 2.4 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:195627-195854 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~195627-195854 TilS PF09179.6 g55034.t1 - 0.0027 17.6 0.2 0.0042 17 0.1 1.3 1 0 0 1 1 1 1 TilS substrate binding domain | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:420586-420999 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~420586-420999 CCDC-167 PF15188.1 g19697.t1 - 0.013 15.4 0.6 0.018 14.9 0.4 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold571_contigs=4, transcript_loc=scaffold571_contigs=4:236873-237190 Augustus predicted protein sequence Tobacco scaffold571_contigs=4~236873-237190 Sigma70_ner PF04546.8 g67554.t1 - 0.055 13 0.1 0.11 12.1 0 1.5 1 1 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:90516-91968 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~90516-91968 tRNA-synt_1 PF00133.17 g47410.t1 - 0.032 12.2 0 0.032 12.2 0 1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) | Ref_seq=scaffold1098_contigs=4, transcript_loc=scaffold1098_contigs=4:4841-6426 Augustus predicted protein sequence Tobacco scaffold1098_contigs=4~4841-6426 DUF4091 PF13320.1 g8553.t1 - 0.034 14 0.1 0.055 13.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4091) | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:185625-186666 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~185625-186666 CobW_C PF07683.9 g61405.t1 - 0.067 12.9 0 0.16 11.7 0 1.6 2 0 0 2 2 2 0 Cobalamin synthesis protein cobW C-terminal domain | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:6359-8893 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~6359-8893 Tropomyosin_1 PF12718.2 g44993.t1 - 0.015 15.1 4.6 0.027 14.3 3.2 1.3 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:173332-174321 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~173332-174321 DBD_Tnp_Mut PF03108.10 g34194.t1 - 0.000000013 34.3 0 0.000000016 33.9 0 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold846_contigs=10, transcript_loc=scaffold846_contigs=10:212884-213952 Augustus predicted protein sequence Tobacco scaffold846_contigs=10~212884-213952 Tropomyosin PF00261.15 g10451.t1 - 0.0016 17.6 1.5 0.002 17.2 1.1 1.2 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:13461-14983 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~13461-14983 DUF1106 PF06523.6 g22853.t1 - 0.02 14.7 0 0.026 14.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1106) | Ref_seq=scaffold626_contigs=2, transcript_loc=scaffold626_contigs=2:31337-31597 Augustus predicted protein sequence Tobacco scaffold626_contigs=2~31337-31597 AphA_like PF14557.1 g87055.t1 - 0.19 11.2 2.6 0.21 11.1 0.2 2 2 0 0 2 2 2 0 Putative AphA-like transcriptional regulator | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:28332-30290 Augustus predicted protein sequence Tobacco scaffold1866_contigs=5~28332-30290 MRF_C2 PF13888.1 g61902.t1 - 0.044 13.5 0.6 0.064 13 0.4 1.3 1 1 0 1 1 1 0 Myelin gene regulatory factor C-terminal domain 2 | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:23632-24514 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~23632-24514 Papilloma_E5 PF03025.9 g128408.t1 - 0.13 12.2 1.3 0.27 11.1 0.9 1.6 1 0 0 1 1 1 0 Papillomavirus E5 | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:6606-6959 Augustus predicted protein sequence Tobacco scaffold2867_contigs=1~6606-6959 RVT_3 PF13456.1 g111436.t1 - 0.000000059 32.3 0 0.00000013 31.3 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:434568-435918 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~434568-435918 PROCN PF08083.6 g85796.t1 - 0.042 12.3 0.1 0.042 12.3 0 1 1 0 0 1 1 1 0 PROCN (NUC071) domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:599995-600373 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~599995-600373 DUF329 PF03884.9 g118228.t1 - 0.089 12.3 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:152659-153324 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~152659-153324 Lebercilin PF15619.1 g127385.t1 - 0.01 15.2 1.7 0.014 14.8 1.2 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:44843-45595 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~44843-45595 DUF4111 PF13427.1 g95934.t1 - 0.0031 17.3 0.3 0.034 13.9 0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4111) | Ref_seq=scaffold2080_contigs=18, transcript_loc=scaffold2080_contigs=18:37222-38406 Augustus predicted protein sequence Tobacco scaffold2080_contigs=18~37222-38406 B12-binding PF02310.14 g44072.t1 - 0.0034 17.2 0 0.11 12.3 0 2 1 1 1 2 2 2 2 B12 binding domain | Ref_seq=scaffold1033_contigs=1, transcript_loc=scaffold1033_contigs=1:29482-30086 Augustus predicted protein sequence Tobacco scaffold1033_contigs=1~29482-30086 DUF3156 PF11354.3 g78847.t1 - 0.023 14 0.2 0.032 13.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3156) | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:90386-91587 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~90386-91587 Apq12 PF12716.2 g119889.t1 - 0.11 12.1 0 0.2 11.3 0 1.3 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:439972-441750 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~439972-441750 HALZ PF02183.13 g55617.t1 - 0.025 14.2 1.6 0.046 13.4 0.8 1.7 1 1 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:72968-73366 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~72968-73366 Interferon PF00143.14 g64044.t1 - 0.13 12.1 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Interferon alpha/beta domain | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:228254-228589 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~228254-228589 DUF3363 PF11843.3 g477.t1 - 0.078 11.6 1.7 0.11 11.1 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:15363-17577 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~15363-17577 Orthoreo_P10 PF07204.6 g118359.t1 - 0.099 12.3 0 0.12 12 0 1.2 1 0 0 1 1 1 0 Orthoreovirus membrane fusion protein p10 | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:530498-530803 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~530498-530803 Radial_spoke_3 PF06098.6 g68136.t1 - 0.011 14.7 3.4 0.013 14.5 2.3 1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:141048-141338 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~141048-141338 COG2 PF06148.6 g102405.t1 - 0.022 14.6 0.2 0.027 14.3 0.1 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:146919-147251 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~146919-147251 DUF4219 PF13961.1 g67706.t1 - 0.000012 24.5 0.3 0.000019 23.9 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:81376-81615 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~81376-81615 F_actin_bind PF08919.5 g43960.t1 - 0.13 11.9 0.4 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 F-actin binding | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:42021-42266 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~42021-42266 NAM-associated PF14303.1 g65408.t1 - 0.067 13.5 1.5 0.08 13.2 1 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:243470-243736 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~243470-243736 DC_STAMP PF07782.8 g37999.t1 - 0.07 12.7 0.2 0.087 12.4 0.1 1.2 1 0 0 1 1 1 0 DC-STAMP-like protein | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:415035-415664 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~415035-415664 Y1_Tnp PF01797.11 g41708.t1 - 0.088 12.6 0 0.23 11.3 0 1.7 1 1 0 1 1 1 0 Transposase IS200 like | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:1813-2316 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~1813-2316 NOA36 PF06524.7 g42921.t1 - 0.0088 15.3 11.6 0.013 14.7 8.1 1.2 1 0 0 1 1 1 1 NOA36 protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:874212-874868 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~874212-874868 RinB PF06116.7 g52101.t1 - 1.6 8.4 3.6 2.5 7.7 2.5 1.3 1 0 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:395962-396405 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~395962-396405 Mmp37 PF09139.6 g11066.t1 - 0.037 13 0.1 0.043 12.8 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial matrix Mmp37 | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:76437-76838 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~76437-76838 EIAV_Rev PF11129.3 g33500.t1 - 0.18 11.7 2.7 5.9 6.8 0.2 3 1 1 2 3 3 3 0 Rev protein of equine infectious anaemia virus | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:364542-365250 Augustus predicted protein sequence Tobacco scaffold831_contigs=10~364542-365250 SLR1-BP PF07333.7 g121984.t1 - 0.01 16 8.9 0.01 16 5.9 1.3 1 1 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2740_contigs=4, transcript_loc=scaffold2740_contigs=4:42514-42735 Augustus predicted protein sequence Tobacco scaffold2740_contigs=4~42514-42735 HSP9_HSP12 PF04119.7 g28158.t1 - 0.1 12.7 0.4 1.1 9.4 0 2 1 1 1 2 2 2 0 Heat shock protein 9/12 | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:5130-5375 Augustus predicted protein sequence Tobacco scaffold740_contigs=1~5130-5375 CSTF_C PF14304.1 g106644.t1 - 0.034 13.4 0.9 0.055 12.7 0.6 1.3 1 0 0 1 1 1 0 Transcription termination and cleavage factor C-terminal | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:256968-257210 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~256968-257210 DUF3352 PF11832.3 g1636.t1 - 0.042 12.1 0.1 0.046 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3352) | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:7762-8298 Augustus predicted protein sequence Tobacco scaffold191_contigs=2~7762-8298 WxL PF13731.1 g122040.t1 - 0.094 12.5 0 0.13 12 0 1.2 1 0 0 1 1 1 0 WxL domain surface cell wall-binding | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:61712-62979 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~61712-62979 GATase_4 PF13230.1 g35523.t1 - 0.1 11.2 1.2 0.13 10.9 0.8 1.1 1 0 0 1 1 1 0 Glutamine amidotransferases class-II | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:278070-278970 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~278070-278970 DUF2305 PF10230.4 g88412.t1 - 0.093 12.1 0 0.1 12 0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2305) | Ref_seq=scaffold1927_contigs=30, transcript_loc=scaffold1927_contigs=30:4715-5092 Augustus predicted protein sequence Tobacco scaffold1927_contigs=30~4715-5092 PsbP PF01789.11 g46102.t1 - 0.068 12.6 0 0.099 12 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:80245-80850 Augustus predicted protein sequence Tobacco scaffold1055_contigs=9~80245-80850 CENP-F_leu_zip PF10473.4 g83179.t1 - 1.2 8.9 12.9 0.22 11.3 1.7 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:257090-257782 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~257090-257782 ABC2_membrane_3 PF12698.2 g88667.t1 - 2.2 7.2 6.7 29 3.5 4.6 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:117556-119026 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~117556-119026 UBN2 PF14223.1 g20166.t1 - 0.068 12.9 0 0.089 12.5 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:220654-220902 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~220654-220902 DUF29 PF01724.11 g22712.t1 - 0.059 13.2 0.1 0.065 13 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF29 | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:180381-180882 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~180381-180882 NAM-associated PF14303.1 g101016.t1 - 0.000059 23.4 3.8 0.000073 23.1 2.7 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:79693-80142 Augustus predicted protein sequence Tobacco scaffold2207_contigs=13~79693-80142 Aminotran_4 PF01063.14 g61865.t1 - 0.051 13 0 0.12 11.8 0 1.5 1 1 0 1 1 1 0 Aminotransferase class IV | Ref_seq=scaffold1343_contigs=14, transcript_loc=scaffold1343_contigs=14:408472-410554 Augustus predicted protein sequence Tobacco scaffold1343_contigs=14~408472-410554 Vps5 PF09325.5 g129767.t1 - 0.014 14.6 1.3 0.017 14.3 0.8 1.3 1 1 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold3054_contigs=1, transcript_loc=scaffold3054_contigs=1:2917-3291 Augustus predicted protein sequence Tobacco scaffold3054_contigs=1~2917-3291 Microcin PF03526.8 g107180.t1 - 0.14 11.8 1.9 1.3 8.6 0.6 2.7 2 1 0 2 2 2 0 Colicin E1 (microcin) immunity protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:845997-846856 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~845997-846856 ASL_C2 PF14698.1 g63422.t1 - 0.045 13.8 0 0.065 13.3 0 1.3 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:244625-244888 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~244625-244888 Nop14 PF04147.7 g55684.t1 - 0.11 10.4 20.4 0.12 10.2 14.1 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:230740-233882 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~230740-233882 PRCC PF10253.4 g16231.t1 - 0.012 16.3 0.1 0.014 16.1 0.1 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:131846-133972 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~131846-133972 DUF3070 PF11270.3 g91.t1 - 0.64 9.8 6 0.86 9.4 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:69554-69961 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~69554-69961 Dev_Cell_Death PF10539.4 g55484.t1 - 0.12 11.9 0 0.17 11.4 0 1.3 1 0 0 1 1 1 0 Development and cell death domain | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:251398-251897 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~251398-251897 UPF0104 PF03706.8 g120504.t1 - 0.0018 17.5 3.1 0.0023 17.2 2.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:72836-73462 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~72836-73462 UBN2_3 PF14244.1 g92637.t1 - 0.1 12.1 0 0.12 11.8 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:195614-196847 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~195614-196847 HTH_psq PF05225.11 g114960.t1 - 0.092 12.3 0 0.17 11.4 0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:46855-47154 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~46855-47154 zf-met PF12874.2 g36396.t1 - 0.016 15.4 1.6 0.065 13.4 0.4 2.4 2 0 0 2 2 2 0 Zinc-finger of C2H2 type | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:53166-53554 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~53166-53554 DUF4219 PF13961.1 g107378.t1 - 0.02 14.2 0 0.027 13.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1253414-1253647 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1253414-1253647 zf-BED PF02892.10 g63183.t1 - 0.023 14.4 0 0.055 13.2 0 1.6 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:57138-57707 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~57138-57707 DUF3534 PF12053.3 g64517.t1 - 0.058 13.2 0.2 0.066 13 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:316769-317062 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~316769-317062 CENP-H PF05837.7 g58800.t1 - 0.018 15.2 2.1 0.024 14.7 1.5 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:13478-13873 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~13478-13873 Pox_A28 PF04584.9 g113377.t1 - 0.087 12.6 0.1 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A28 family | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:103074-103928 Augustus predicted protein sequence Tobacco scaffold2628_contigs=7~103074-103928 MgtE_N PF03448.12 g87052.t1 - 0.056 13.7 0.5 0.099 12.9 0.3 1.4 1 0 0 1 1 1 0 MgtE intracellular N domain | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:26325-26591 Augustus predicted protein sequence Tobacco scaffold1866_contigs=5~26325-26591 CCDC155 PF14662.1 g96935.t1 - 0.013 15 3.3 0.017 14.6 2.3 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:135241-136030 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~135241-136030 LELP1 PF15042.1 g10061.t1 - 0.49 10.5 7.1 0.46 10.7 4.1 1.6 1 1 0 1 1 1 0 Late cornified envelope-like proline-rich protein 1 | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:33944-34734 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~33944-34734 DUF2157 PF09925.4 g32259.t1 - 0.15 11.6 0 0.31 10.6 0 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:33126-35334 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~33126-35334 HSBP1 PF06825.7 g85117.t1 - 0.16 11.5 0.9 0.22 11.1 0.6 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:273502-274432 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~273502-274432 Kelch_1 PF01344.20 g23944.t1 - 0.12 11.9 1.9 1.4 8.4 0.5 2.6 2 1 1 3 3 3 0 Kelch motif | Ref_seq=scaffold655_contigs=15, transcript_loc=scaffold655_contigs=15:270475-271700 Augustus predicted protein sequence Tobacco scaffold655_contigs=15~270475-271700 TAFH PF07531.9 g128018.t1 - 0.02 14.5 0 0.029 13.9 0 1.4 1 0 0 1 1 1 0 NHR1 homology to TAF | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:29482-30994 Augustus predicted protein sequence Tobacco scaffold2846_contigs=1~29482-30994 Prominin PF05478.6 g110729.t1 - 0.056 10.9 0.1 0.067 10.7 0.1 1.1 1 0 0 1 1 1 0 Prominin | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:330579-330967 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~330579-330967 Baculo_PP31 PF05311.6 g14768.t1 - 0.015 14.5 3.7 0.015 14.5 2.6 1 1 0 0 1 1 1 0 Baculovirus 33KDa late protein (PP31) | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:145822-146223 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~145822-146223 DUF572 PF04502.8 g56962.t1 - 3.5 6.7 22.1 4.3 6.4 15.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1243_contigs=3, transcript_loc=scaffold1243_contigs=3:18976-19272 Augustus predicted protein sequence Tobacco scaffold1243_contigs=3~18976-19272 YdjO PF14169.1 g26225.t1 - 0.09 12.2 0.3 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:92768-93028 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~92768-93028 zf-BED PF02892.10 g43867.t1 - 0.0047 16.6 1.2 0.0093 15.7 0.8 1.5 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:192050-196745 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~192050-196745 NPCBM_assoc PF10633.4 g60860.t1 - 0.038 14 0 0.055 13.5 0 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:399108-399425 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~399108-399425 Antirestrict PF03230.8 g114052.t1 - 0.056 13.4 0 0.068 13.1 0 1.2 1 0 0 1 1 1 0 Antirestriction protein | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:155882-156187 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~155882-156187 RNase_H2-Ydr279 PF09468.5 g93168.t1 - 0.044 12.9 2.3 0.046 12.9 1.6 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2009_contigs=4, transcript_loc=scaffold2009_contigs=4:14863-15431 Augustus predicted protein sequence Tobacco scaffold2009_contigs=4~14863-15431 FH2 PF02181.18 g82091.t1 - 0.0015 17.4 0.3 0.0018 17.2 0.2 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:649278-649706 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~649278-649706 LRS4 PF10422.4 g118103.t1 - 0.063 12.6 0.7 0.067 12.5 0.5 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:241564-241851 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~241564-241851 FH2 PF02181.18 g116467.t1 - 0.017 14 0.2 0.023 13.6 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:124372-126464 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~124372-126464 Involucrin_N PF10583.4 g6782.t1 - 0.16 12.2 0.6 0.3 11.4 0.4 1.4 1 0 0 1 1 1 0 Involucrin of squamous epithelia N-terminus | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:184100-184887 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~184100-184887 DUF4523 PF15023.1 g59513.t1 - 0.034 13.6 0 0.042 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:237797-238258 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~237797-238258 HCV_NS5a_1a PF08300.8 g82493.t1 - 0.075 12.9 0 0.12 12.2 0 1.3 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a zinc finger domain | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:94582-94965 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~94582-94965 SDA1 PF05285.7 g103775.t1 - 0.0074 15.6 14.3 0.011 15 9.9 1.4 1 0 0 1 1 1 1 SDA1 | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:27580-28593 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~27580-28593 PBP_sp32 PF07222.7 g119808.t1 - 0.34 10 3.6 0.56 9.3 2.5 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:238689-239930 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~238689-239930 IP_trans PF02121.13 g3284.t1 - 0.072 12.2 0.9 0.083 12 0.6 1.1 1 0 0 1 1 1 0 Phosphatidylinositol transfer protein | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:181428-181643 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~181428-181643 BLVR PF06375.6 g59544.t1 - 0.29 10.9 2.2 0.38 10.5 1.5 1.2 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:20331-22316 Augustus predicted protein sequence Tobacco scaffold1293_contigs=3~20331-22316 Phage_int_SAM_4 PF13495.1 g47443.t1 - 0.15 12.4 0.1 0.21 11.9 0 1.2 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:8468-10523 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~8468-10523 UPF0193 PF05250.6 g10944.t1 - 0.022 14.3 0.1 0.025 14.1 0.1 1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0193) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:282152-282761 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~282152-282761 LexA_DNA_bind PF01726.11 g114513.t1 - 0.15 11.6 0.8 0.92 9.1 0.2 2.1 2 0 0 2 2 2 0 LexA DNA binding domain | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:269369-269701 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~269369-269701 PH_8 PF15409.1 g20122.t1 - 0.095 12.7 0 0.17 11.9 0 1.3 1 0 0 1 1 1 0 Pleckstrin homology domain | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:138565-139634 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~138565-139634 Ribosomal_L31 PF01197.13 g59371.t1 - 0.11 12.4 1.9 0.31 11 0.2 2.2 2 1 0 2 2 2 0 Ribosomal protein L31 | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:6376-6693 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~6376-6693 DUF1153 PF06627.6 g36374.t1 - 0.15 11.9 0.3 0.27 11.1 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1153) | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:24424-25335 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~24424-25335 T2SG PF08334.6 g19120.t1 - 0.0062 16.2 0 0.0078 15.9 0 1.2 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein G | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:349103-349468 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~349103-349468 LIN37 PF15306.1 g97822.t1 - 0.25 11.3 3.2 0.24 11.3 2.2 1.1 1 0 0 1 1 1 0 LIN37 | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:233486-233857 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~233486-233857 ATHILA PF03078.10 g38741.t1 - 0.01 14.4 0 0.011 14.3 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:58416-58949 Augustus predicted protein sequence Tobacco scaffold943_contigs=4~58416-58949 FlxA PF14282.1 g85058.t1 - 0.055 13.4 0.2 0.073 13 0.2 1.1 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:119235-119576 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~119235-119576 DUF1455 PF07306.6 g76103.t1 - 0.27 11.3 1.4 0.45 10.5 1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1455) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:226154-226750 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~226154-226750 XhlA PF10779.4 g114277.t1 - 0.026 14.4 0.1 0.037 13.9 0 1.2 1 0 0 1 1 1 0 Haemolysin XhlA | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:1144-1470 Augustus predicted protein sequence Tobacco scaffold2644_contigs=21~1144-1470 T_Ag_DNA_bind PF02217.11 g85019.t1 - 0.036 14.4 0.2 0.051 13.9 0.1 1.4 1 1 0 1 1 1 0 Origin of replication binding protein | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:37561-37854 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~37561-37854 ETS_PEA3_N PF04621.8 g14822.t1 - 0.088 12 0.3 0.11 11.6 0.2 1.2 1 0 0 1 1 1 0 PEA3 subfamily ETS-domain transcription factor N terminal domain | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:285540-286148 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~285540-286148 ATHILA PF03078.10 g128061.t1 - 0.024 13.2 0 0.11 11 0 2 1 1 1 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:17502-18440 Augustus predicted protein sequence Tobacco scaffold2848_contigs=1~17502-18440 zf-CCHC PF00098.18 g68424.t1 - 0.00012 21.7 1 0.0002 21.1 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:79346-80008 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~79346-80008 PGC7_Stella PF15549.1 g53375.t1 - 1.1 9.1 7 1.4 8.9 4.8 1.2 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:190669-190950 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~190669-190950 DUF1551 PF07585.6 g106508.t1 - 0.045 12.6 0 0.049 12.4 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1551) | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:95986-96204 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~95986-96204 DUF4286 PF14114.1 g51429.t1 - 0.044 14 0.2 0.12 12.6 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:9019-9483 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~9019-9483 ATHILA PF03078.10 g4992.t1 - 0.0012 17.5 0 0.0013 17.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:54144-55001 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~54144-55001 Toxin_7 PF05980.7 g18789.t1 - 0.022 14.7 0.4 0.23 11.5 0.1 2.3 2 0 0 2 2 2 0 Toxin 7 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:767462-769551 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~767462-769551 Nodulin_late PF07127.6 g87118.t1 - 0.00000016 31.3 6.9 0.00066 19.7 0.6 2.2 2 0 0 2 2 2 2 Late nodulin protein | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:100237-100750 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~100237-100750 RVT_thumb PF06817.9 g85382.t1 - 0.016 14.7 0 0.021 14.3 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase thumb domain | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:338331-338537 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~338331-338537 T2SM_b PF10741.4 g105533.t1 - 0.079 12.5 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b | Ref_seq=scaffold2356_contigs=4, transcript_loc=scaffold2356_contigs=4:33798-37237 Augustus predicted protein sequence Tobacco scaffold2356_contigs=4~33798-37237 Ribosomal_L23eN PF03939.8 g13447.t1 - 0.089 12.8 0.8 0.13 12.2 0.5 1.4 1 0 0 1 1 1 0 Ribosomal protein L23, N-terminal domain | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:49067-49351 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~49067-49351 Pox_LP_H2 PF03356.10 g3444.t1 - 0.12 12 0 0.15 11.7 0 1.1 1 0 0 1 1 1 0 Viral late protein H2 | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:63792-64157 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~63792-64157 DUF3441 PF11923.3 g38508.t1 - 0.01 15.4 0.2 1.4 8.5 0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3441) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:111525-111932 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~111525-111932 RHH_1 PF01402.16 g82012.t1 - 0.015 15.1 0.3 0.029 14.2 0.2 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:480459-481460 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~480459-481460 DUF1985 PF09331.6 g126559.t1 - 0.000058 22.9 0.1 0.031 14 0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold2798_contigs=1, transcript_loc=scaffold2798_contigs=1:66249-66858 Augustus predicted protein sequence Tobacco scaffold2798_contigs=1~66249-66858 DUF480 PF04337.7 g33302.t1 - 0.072 12.9 0.1 0.097 12.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF480 | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:4017-4813 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~4017-4813 NAM-associated PF14303.1 g32038.t1 - 0.00092 19.5 7.3 0.0011 19.2 5.1 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold803_contigs=6, transcript_loc=scaffold803_contigs=6:1801-2325 Augustus predicted protein sequence Tobacco scaffold803_contigs=6~1801-2325 Tropomyosin PF00261.15 g20649.t1 - 0.0041 16.2 1 0.0052 15.9 0.7 1.2 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:621789-622210 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~621789-622210 DUF4191 PF13829.1 g88.t1 - 0.04 13 0 0.045 12.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:66012-66651 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~66012-66651 DUF1556 PF07590.6 g118778.t1 - 0.014 15.5 3.2 0.018 15.2 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1556) | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:69173-69902 Augustus predicted protein sequence Tobacco scaffold2706_contigs=4~69173-69902 Autoind_bind PF03472.10 g41447.t1 - 0.11 11.8 0 0.11 11.7 0 1.2 1 0 0 1 1 1 0 Autoinducer binding domain | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:342571-343327 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~342571-343327 FlxA PF14282.1 g48808.t1 - 0.026 14.4 3.4 0.037 13.9 2.4 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:412560-413012 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~412560-413012 Spore_coat_CotO PF14153.1 g50563.t1 - 0.0000032 26.7 11.8 0.0000034 26.6 8.2 1.2 1 0 0 1 1 1 1 Spore coat protein CotO | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:341703-342323 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~341703-342323 DUF740 PF05340.7 g65490.t1 - 0.06 11.7 1.6 0.061 11.6 1.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF740) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:35642-35854 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~35642-35854 Keratin_B2 PF01500.12 g56761.t1 - 0.032 14 0.5 0.038 13.7 0.3 1.1 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:785396-785671 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~785396-785671 RVT_3 PF13456.1 g62538.t1 - 4.1E-011 42.5 0 5.1E-011 42.2 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:178342-178656 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~178342-178656 Dimer_Tnp_hAT PF05699.9 g67239.t1 - 0.0002 20.8 0.1 0.00045 19.7 0 1.6 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:869178-871301 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~869178-871301 Occludin_ELL PF07303.8 g70259.t1 - 0.048 14.3 1.3 0.048 14.3 0.9 1.6 2 0 0 2 2 2 0 Occludin homology domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:158465-158893 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~158465-158893 PMG PF05287.7 g39952.t1 - 0.078 12.7 0.1 0.097 12.4 0 1.2 1 0 0 1 1 1 0 PMG protein | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:50624-50863 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~50624-50863 FAP PF07174.6 g79405.t1 - 6.1 6 16.5 6.4 5.9 11.4 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) | Ref_seq=scaffold1691_contigs=8, transcript_loc=scaffold1691_contigs=8:101128-101436 Augustus predicted protein sequence Tobacco scaffold1691_contigs=8~101128-101436 Transposase_28 PF04195.7 g65001.t1 - 0.055 12.7 0.1 0.064 12.5 0 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:187803-188434 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~187803-188434 BHD_3 PF10405.4 g108708.t1 - 0.059 13 0 0.12 12 0 1.5 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 3 | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:44352-44838 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~44352-44838 DUF2866 PF11065.3 g21113.t1 - 0.1 12.5 1.6 0.44 10.5 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2866) | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:494768-496555 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~494768-496555 CENP-K PF11802.3 g125955.t1 - 0.079 12.1 0.5 0.092 11.9 0.4 1.1 1 0 0 1 1 1 0 Centromere-associated protein K | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:64953-66102 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~64953-66102 UBN2 PF14223.1 g21436.t1 - 0.0011 18.7 0.4 0.012 15.4 0.1 2.1 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:460516-460977 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~460516-460977 Herpes_capsid PF06112.6 g99480.t1 - 0.23 11.4 1.9 0.51 10.3 1.3 1.6 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:640366-645285 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~640366-645285 Vitelline_membr PF10542.4 g72382.t1 - 0.1 12.2 1 0.22 11.1 0.7 1.5 1 0 0 1 1 1 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:953504-954216 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~953504-954216 Mit_proteolip PF08039.6 g129893.t1 - 0.04 13.8 0.8 9.1 6.3 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial proteolipid | Ref_seq=scaffold3165_contigs=1, transcript_loc=scaffold3165_contigs=1:1-1979 Augustus predicted protein sequence Tobacco scaffold3165_contigs=1~1-1979 DUF782 PF05614.6 g113450.t1 - 0.11 12.7 0 0.18 11.9 0 1.4 1 0 0 1 1 1 0 Circovirus protein of unknown function (DUF782) | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:35414-35942 Augustus predicted protein sequence Tobacco scaffold2632_contigs=8~35414-35942 Vmethyltransf_C PF08456.5 g120316.t1 - 0.029 13.7 0 0.043 13.2 0 1.3 1 0 0 1 1 1 0 Viral methyltransferase C-terminal | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:199885-201181 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~199885-201181 TrkA_C PF02080.16 g77918.t1 - 0.0032 17 0 0.0043 16.6 0 1.3 1 0 0 1 1 1 1 TrkA-C domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:39737-40092 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~39737-40092 NtA PF03146.10 g77435.t1 - 0.0012 18.4 0.1 1.4 8.5 0 2.1 2 0 0 2 2 2 2 Agrin NtA domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:65543-66100 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~65543-66100 DUF725 PF05267.7 g120624.t1 - 0.086 12.7 0.7 0.091 12.6 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF725) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:343413-343640 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~343413-343640 DUF4144 PF13642.1 g70429.t1 - 0.013 15.8 0.3 0.016 15.4 0.2 1.1 1 0 0 1 1 1 0 protein structure with unknown function | Ref_seq=scaffold1495_contigs=2, transcript_loc=scaffold1495_contigs=2:10506-10793 Augustus predicted protein sequence Tobacco scaffold1495_contigs=2~10506-10793 DUF2543 PF10820.3 g59208.t1 - 0.077 13 0 0.088 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) | Ref_seq=scaffold1284_contigs=5, transcript_loc=scaffold1284_contigs=5:175717-175959 Augustus predicted protein sequence Tobacco scaffold1284_contigs=5~175717-175959 DUF1826 PF08856.6 g64908.t1 - 0.064 12.9 0 0.09 12.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1826) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:403262-403555 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~403262-403555 Amidase_2 PF01510.20 g75209.t1 - 0.095 12.7 0 0.11 12.5 0 1.1 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:196400-197154 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~196400-197154 DUF3975 PF13126.1 g23243.t1 - 0.013 15.6 0 0.017 15.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3975) | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:70066-70406 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~70066-70406 ATHILA PF03078.10 g22270.t1 - 0.0000052 25.3 0 0.0000052 25.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:3263-3505 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~3263-3505 PRCC PF10253.4 g2023.t1 - 0.05 14.2 0.2 0.059 14 0.1 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold199_contigs=2, transcript_loc=scaffold199_contigs=2:73007-73231 Augustus predicted protein sequence Tobacco scaffold199_contigs=2~73007-73231 DUF4475 PF14753.1 g31712.t1 - 0.057 12.9 0.1 0.066 12.7 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4475) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:147196-147411 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~147196-147411 DUF1502 PF07397.6 g77487.t1 - 0.067 12.8 1.5 0.11 12.1 1 1.3 1 0 0 1 1 1 0 Repeat of unknown function (DUF1502) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:187264-188001 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~187264-188001 Acetate_kinase PF00871.12 g85074.t1 - 0.063 11.8 0 0.063 11.8 0 1 1 0 0 1 1 1 0 Acetokinase family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:159773-160119 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~159773-160119 AvrB_AvrC PF05394.6 g21770.t1 - 0.042 12.8 0 0.045 12.7 0 1 1 0 0 1 1 1 0 Avirulence protein | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:152733-153020 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~152733-153020 HrpA_pilin PF09589.5 g42333.t1 - 0.07 13.5 2.8 0.086 13.2 1.9 1.3 1 0 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:69573-69968 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~69573-69968 zf-CCHC PF00098.18 g14816.t1 - 0.00023 20.9 0.8 0.00038 20.2 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:278720-280035 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~278720-280035 RNA_pol_Rpb4 PF03874.11 g55690.t1 - 0.068 13.1 0.2 0.1 12.6 0.2 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb4 | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:244446-247194 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~244446-247194 ATHILA PF03078.10 g70019.t1 - 0.0017 17 0 0.0018 16.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:92218-92583 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~92218-92583 AftA_N PF12250.3 g23085.t1 - 0.082 11.6 0.1 0.095 11.3 0.1 1.1 1 0 0 1 1 1 0 Arabinofuranosyltransferase N terminal | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:63859-64482 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~63859-64482 RNA_pol_Rpc4 PF05132.9 g19931.t1 - 1.7 8.6 4.1 1.7 8.6 2.8 1 1 0 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:66808-67011 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~66808-67011 PRANC PF09372.5 g95965.t1 - 0.00027 20.8 0.1 0.84 9.6 0 3.1 3 0 0 3 3 3 1 PRANC domain | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:30945-32853 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~30945-32853 Retrotrans_gag PF03732.12 g94409.t1 - 0.026 14.5 0 0.14 12.2 0 2 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:894491-895824 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~894491-895824 LRR_7 PF13504.1 g95634.t1 - 0.15 12.3 0.2 5 7.7 0 2.6 2 1 0 2 2 2 0 Leucine rich repeat | Ref_seq=scaffold2064_contigs=3, transcript_loc=scaffold2064_contigs=3:10412-10648 Augustus predicted protein sequence Tobacco scaffold2064_contigs=3~10412-10648 ADIP PF11559.3 g38425.t1 - 0.081 12.8 2.6 0.15 12 1.8 1.4 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:274921-275256 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~274921-275256 Plasmid_parti PF01672.11 g74056.t1 - 0.19 12.1 5.9 16 5.9 1.3 2.9 1 1 1 2 2 2 0 Putative plasmid partition protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:462043-462375 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~462043-462375 Gloverin PF10793.4 g32400.t1 - 0.054 13.1 0 0.057 13 0 1.2 1 0 0 1 1 1 0 Gloverin-like protein | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:75729-76599 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~75729-76599 DUF562 PF04763.7 g127919.t1 - 0.0003 20 0 0.69 9.1 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF562) | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:61501-62084 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~61501-62084 DUF4145 PF13643.1 g116464.t1 - 0.07 12.9 0 0.14 11.9 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:115394-116077 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~115394-116077 DUF1627 PF07789.7 g110758.t1 - 0.11 12 0 0.11 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1627) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:402652-402852 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~402652-402852 ETF_alpha PF00766.14 g77447.t1 - 0.05 13.2 0 0.077 12.6 0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein FAD-binding domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:104847-109177 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~104847-109177 DUF1830 PF08865.6 g130017.t1 - 0.00014 21.4 0 19 4.9 0 4.1 4 0 0 4 4 4 3 Domain of unknown function (DUF1830) | Ref_seq=scaffold3328_contigs=1, transcript_loc=scaffold3328_contigs=1:1-2033 Augustus predicted protein sequence Tobacco scaffold3328_contigs=1~1-2033 Form_Nir_trans PF01226.12 g117424.t1 - 0.086 11.7 0.1 0.1 11.4 0.1 1.1 1 0 0 1 1 1 0 Formate/nitrite transporter | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:135953-137051 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~135953-137051 gag_pre-integrs PF13976.1 g80502.t1 - 0.0088 15.6 0.1 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:158050-158325 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~158050-158325 DNA_primase_S PF01896.14 g88100.t1 - 0.098 12.4 0 0.11 12.3 0 1.1 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase small subunit | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:137694-138136 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~137694-138136 DUF2093 PF09866.4 g9696.t1 - 0.062 12.4 0.3 0.68 9.1 0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2093) | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:108726-108932 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~108726-108932 DUF2360 PF10152.4 g10261.t1 - 0.097 12.9 2.8 0.14 12.4 1.9 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold385_contigs=8, transcript_loc=scaffold385_contigs=8:88136-89874 Augustus predicted protein sequence Tobacco scaffold385_contigs=8~88136-89874 NAM-associated PF14303.1 g120379.t1 - 0.00017 21.9 8.4 0.00019 21.8 5.8 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2723_contigs=6, transcript_loc=scaffold2723_contigs=6:165953-166345 Augustus predicted protein sequence Tobacco scaffold2723_contigs=6~165953-166345 DUF936 PF06075.7 g19238.t1 - 0.036 13 0.1 0.036 13 0.1 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:49200-49637 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~49200-49637 Lipase_2 PF01674.13 g17013.t1 - 0.16 11.2 0.1 0.23 10.7 0.1 1.2 1 0 0 1 1 1 0 Lipase (class 2) | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:252727-253663 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~252727-253663 Bradykinin PF06753.7 g45783.t1 - 0.083 12.3 1.2 0.15 11.6 0.9 1.4 1 0 0 1 1 1 0 Bradykinin | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:62147-62431 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~62147-62431 FH2 PF02181.18 g8734.t1 - 0.019 13.8 0 0.022 13.6 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:83988-84407 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~83988-84407 ATHILA PF03078.10 g59828.t1 - 0.00013 20.7 0 0.00015 20.5 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:268162-268443 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~268162-268443 DUF2730 PF10805.3 g41927.t1 - 0.052 13.2 0.7 8.5 6.1 0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:260264-260786 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~260264-260786 NESP55 PF06390.7 g2485.t1 - 0.29 10.4 3.1 0.39 10 2.2 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:109174-110881 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~109174-110881 Sar8_2 PF03058.9 g25635.t1 - 0.0019 18.5 0 0.0024 18.1 0 1.1 1 0 0 1 1 1 1 Sar8.2 family | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:153552-154811 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~153552-154811 CUT PF02376.10 g73660.t1 - 0.09 12.5 0 0.1 12.4 0 1.2 1 0 0 1 1 1 0 CUT domain | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:126418-126618 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~126418-126618 RPAP1_N PF08621.5 g38544.t1 - 0.067 12.7 0 0.2 11.2 0 1.8 1 0 0 1 1 1 0 RPAP1-like, N-terminal | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:22727-23793 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~22727-23793 Chromo PF00385.19 g59130.t1 - 0.0021 17.7 0.1 0.0032 17.1 0 1.3 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:53805-54675 Augustus predicted protein sequence Tobacco scaffold1281_contigs=3~53805-54675 ATHILA PF03078.10 g60184.t1 - 0.00000039 29 0 0.00000043 28.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:168355-168621 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~168355-168621 Fic_N PF13784.1 g124393.t1 - 0.12 12.2 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 Fic/DOC family N-terminal | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2124586-2124885 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2124586-2124885 DUF4164 PF13747.1 g50222.t1 - 0.018 15.1 4.5 0.051 13.6 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:173696-174224 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~173696-174224 Reticulon PF02453.12 g122376.t1 - 0.00012 21.6 0.3 0.23 11 0.3 2.2 2 0 0 2 2 2 2 Reticulon | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:20053-22183 Augustus predicted protein sequence Tobacco scaffold2745_contigs=7~20053-22183 mRNA_triPase PF02940.10 g70431.t1 - 0.034 13.8 0.5 0.044 13.5 0.4 1.2 1 0 0 1 1 1 0 mRNA capping enzyme, beta chain | Ref_seq=scaffold1495_contigs=2, transcript_loc=scaffold1495_contigs=2:12550-13107 Augustus predicted protein sequence Tobacco scaffold1495_contigs=2~12550-13107 DNAP_B_exo_N PF08452.5 g59427.t1 - 0.11 11.7 9.1 3 7.1 0 3.2 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:100884-102490 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~100884-102490 Filament PF00038.16 g38583.t1 - 0.0057 16.1 3.8 0.0069 15.8 2.6 1 1 0 0 1 1 1 1 Intermediate filament protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:130154-130393 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~130154-130393 ChaB PF06150.7 g71257.t1 - 0.017 14.9 0 0.027 14.2 0 1.3 1 0 0 1 1 1 0 ChaB | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:360117-360371 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~360117-360371 PetN PF03742.9 g63188.t1 - 4 7 7.1 6.6 6.3 0.1 2.8 3 0 0 3 3 3 0 PetN | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:63655-64214 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~63655-64214 Chon_Sulph_att PF06566.6 g32606.t1 - 0.073 12.6 0.5 0.092 12.3 0.3 1 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:471087-471296 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~471087-471296 PAE PF03283.8 g15758.t1 - 0.19 10.3 0 0.39 9.2 0 1.4 2 0 0 2 2 2 0 Pectinacetylesterase | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:254170-255127 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~254170-255127 Siah-Interact_N PF09032.6 g8363.t1 - 0.12 12.4 0.1 0.25 11.4 0 1.6 2 0 0 2 2 2 0 Siah interacting protein, N terminal | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:319016-319529 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~319016-319529 TcpE PF12648.2 g49318.t1 - 1.3 9.2 9.1 1.2 9.3 4.1 2.2 1 1 1 2 2 2 0 TcpE family | Ref_seq=scaffold1125_contigs=3, transcript_loc=scaffold1125_contigs=3:106962-107411 Augustus predicted protein sequence Tobacco scaffold1125_contigs=3~106962-107411 DUF4219 PF13961.1 g124051.t1 - 0.0097 15.3 0.2 0.017 14.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1252864-1253247 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1252864-1253247 Mpp10 PF04006.7 g12679.t1 - 0.12 10.6 13.9 0.12 10.6 9.6 1.1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:254907-255278 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~254907-255278 DUF3633 PF12315.3 g38931.t1 - 0.047 12.9 7.1 0.056 12.7 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3633) | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:296645-298000 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~296645-298000 SspP PF08179.7 g49879.t1 - 0.11 12.7 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 Small acid-soluble spore protein P family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:301174-301440 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~301174-301440 DUF3707 PF12499.3 g89597.t1 - 0.1 12.9 0 0.95 9.7 0 1.9 1 1 1 2 2 2 0 Pherophorin | Ref_seq=scaffold1950_contigs=8, transcript_loc=scaffold1950_contigs=8:170178-170871 Augustus predicted protein sequence Tobacco scaffold1950_contigs=8~170178-170871 FAR1 PF03101.10 g91346.t1 - 0.095 13.2 0.1 0.13 12.7 0.1 1.2 1 0 0 1 1 1 0 FAR1 DNA-binding domain | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:490608-491088 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~490608-491088 HpaB PF03241.8 g23404.t1 - 0.095 11.5 0.1 1.3 7.8 0 2 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase C terminal | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:53779-54232 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~53779-54232 FMN_red PF03358.10 g2047.t1 - 0.021 14.3 0 0.023 14.2 0 1.1 1 0 0 1 1 1 0 NADPH-dependent FMN reductase | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:64963-65211 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~64963-65211 DUF2457 PF10446.4 g111774.t1 - 0.031 13 21.3 0.038 12.7 14.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:176074-177171 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~176074-177171 BATS PF06968.8 g83595.t1 - 0.14 11.9 0.1 0.17 11.7 0 1.2 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain | Ref_seq=scaffold1797_contigs=4, transcript_loc=scaffold1797_contigs=4:64650-65472 Augustus predicted protein sequence Tobacco scaffold1797_contigs=4~64650-65472 Siah-Interact_N PF09032.6 g103853.t1 - 0.078 13 0.3 0.078 13 0.2 2.6 4 0 0 4 4 4 0 Siah interacting protein, N terminal | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:222219-223770 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~222219-223770 zf-primase PF09329.6 g2148.t1 - 0.12 11.9 0 0.17 11.5 0 1.2 1 0 0 1 1 1 0 Primase zinc finger | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:78437-78652 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~78437-78652 Ribosomal_S28e PF01200.13 g93286.t1 - 0.57 9.9 2.4 1.5 8.6 0.1 2.5 3 1 0 3 3 3 0 Ribosomal protein S28e | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:182158-182607 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~182158-182607 Peptidase_S8 PF00082.17 g84883.t1 - 0.0057 15.8 0 0.0067 15.6 0 1.1 1 0 0 1 1 1 1 Subtilase family | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:9582-10004 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~9582-10004 DUF1518 PF07469.7 g14130.t1 - 0.025 14.7 0.4 0.041 14 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1518) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:130309-131245 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~130309-131245 CENP-I PF07778.6 g4626.t1 - 0.12 10.5 0.2 0.15 10.2 0.1 1.1 1 0 0 1 1 1 0 Mis6 | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:52926-54751 Augustus predicted protein sequence Tobacco scaffold259_contigs=7~52926-54751 DUF1387 PF07139.6 g7875.t1 - 0.034 13.7 0.3 0.046 13.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) | Ref_seq=scaffold324_contigs=5, transcript_loc=scaffold324_contigs=5:15652-16170 Augustus predicted protein sequence Tobacco scaffold324_contigs=5~15652-16170 Cut8_C PF08559.5 g103707.t1 - 0.11 12.3 0.1 20 4.9 0 2.4 2 1 0 2 2 2 0 Cut8 six-helix bundle | Ref_seq=scaffold2313_contigs=8, transcript_loc=scaffold2313_contigs=8:1544-4815 Augustus predicted protein sequence Tobacco scaffold2313_contigs=8~1544-4815 Tropomyosin PF00261.15 g20602.t1 - 0.01 14.9 3.2 0.017 14.1 2.2 1.3 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:529845-533093 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~529845-533093 PROL5-SMR PF15621.1 g8565.t1 - 0.4 11.1 3.1 0.49 10.8 2.2 1.2 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:214617-214982 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~214617-214982 Ribosomal_L15e PF00827.12 g65594.t1 - 0.026 14 1 0.045 13.2 0.7 1.4 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:48508-49654 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~48508-49654 FXR1P_C PF12235.3 g111041.t1 - 1.5 8.8 7.9 1.7 8.7 5.5 1.1 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:128332-128535 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~128332-128535 DUF3656 PF12392.3 g29223.t1 - 0.032 14.3 0 0.038 14 0 1.1 1 0 0 1 1 1 0 Collagenase | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:20826-22111 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~20826-22111 Apolipoprotein PF01442.13 g42741.t1 - 0.00051 19.5 2.5 0.00074 19 1.7 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:483524-484361 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~483524-484361 SR-25 PF10500.4 g39855.t1 - 0.032 13.7 7 0.038 13.4 4.9 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:389556-389957 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~389556-389957 PMSI1 PF15322.1 g91485.t1 - 0.093 11.8 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Protein missing in infertile sperm 1, putative | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:82065-83447 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~82065-83447 DUF525 PF04379.9 g86327.t1 - 0.033 14.1 0 0.042 13.8 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF525) | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:58270-58629 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~58270-58629 Peptidase_C34 PF05413.6 g65141.t1 - 0.067 13.2 0 0.083 12.9 0 1.2 1 0 0 1 1 1 0 Putative closterovirus papain-like endopeptidase | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:146122-146358 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~146122-146358 DUF2069 PF09842.4 g65487.t1 - 0.38 10.7 6.7 0.9 9.5 1.2 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2069) | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:20734-21833 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~20734-21833 IBV_3A PF03617.8 g96735.t1 - 0.076 12.7 0.7 0.17 11.6 0.5 1.6 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:257318-257881 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~257318-257881 MannoseP_isomer PF01050.13 g109040.t1 - 0.13 11.9 0 0.15 11.6 0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:28879-29121 Augustus predicted protein sequence Tobacco scaffold2473_contigs=16~28879-29121 DUF2384 PF09722.5 g109757.t1 - 0.05 13.4 0.3 0.075 12.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:45441-45806 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~45441-45806 ARHGEF5_35 PF15441.1 g80255.t1 - 0.11 11.2 0.3 0.13 10.9 0.2 1 1 0 0 1 1 1 0 Rho guanine nucleotide exchange factor 5/35 | Ref_seq=scaffold1714_contigs=1, transcript_loc=scaffold1714_contigs=1:13604-13927 Augustus predicted protein sequence Tobacco scaffold1714_contigs=1~13604-13927 DUF1319 PF07028.6 g7948.t1 - 0.033 14.3 0.4 0.034 14.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:189352-189946 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~189352-189946 CFC PF09443.5 g84879.t1 - 0.044 13.4 0.3 3.7 7.2 0 2.2 2 0 0 2 2 2 0 Cripto_Frl-1_Cryptic (CFC) | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:111461-111730 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~111461-111730 FKBP_N PF01346.13 g119947.t1 - 0.017 15.1 4 0.023 14.7 2.8 1.2 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:98909-99304 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~98909-99304 FCP1_C PF09309.5 g19260.t1 - 0.051 12.8 0 0.067 12.4 0 1.2 1 0 0 1 1 1 0 FCP1, C-terminal | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:96987-97775 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~96987-97775 But2 PF09792.4 g40446.t1 - 0.027 14.2 0.2 0.035 13.8 0.2 1.2 1 0 0 1 1 1 0 Ubiquitin 3 binding protein But2 C-terminal domain | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:220938-221240 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~220938-221240 GON PF08685.6 g47364.t1 - 0.015 15.1 2.6 0.015 15.1 1.8 1.1 1 0 0 1 1 1 0 GON domain | Ref_seq=scaffold1096_contigs=1, transcript_loc=scaffold1096_contigs=1:7107-7397 Augustus predicted protein sequence Tobacco scaffold1096_contigs=1~7107-7397 zf-C2H2_6 PF13912.1 g33913.t1 - 0.00043 20 0.7 0.00065 19.5 0.5 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:1202225-1202554 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~1202225-1202554 DBINO PF13892.1 g33059.t1 - 0.0059 16.6 5.3 0.0067 16.4 3.7 1.1 1 0 0 1 1 1 1 DNA-binding domain | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:264272-265550 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~264272-265550 CPSF_A PF03178.10 g53331.t1 - 0.028 13.5 0 0.031 13.3 0 1 1 0 0 1 1 1 0 CPSF A subunit region | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:99553-100390 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~99553-100390 zf-Sec23_Sec24 PF04810.10 g116124.t1 - 0.031 13.8 0 0.079 12.5 0 1.7 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:705531-705863 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~705531-705863 TilS PF09179.6 g8689.t1 - 0.23 11.4 2.2 0.35 10.9 0.3 1.9 2 0 0 2 2 2 0 TilS substrate binding domain | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:35408-35719 Augustus predicted protein sequence Tobacco scaffold343_contigs=1~35408-35719 FAP PF07174.6 g103503.t1 - 0.022 14 1.8 0.023 14 1.3 1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:835023-835229 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~835023-835229 SHOCT PF09851.4 g102892.t1 - 0.085 12.3 4.6 0.27 10.7 3.2 1.9 1 0 0 1 1 1 0 Short C-terminal domain | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:120351-121098 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~120351-121098 DUF4626 PF15422.1 g77206.t1 - 0.12 12.2 0.2 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4626) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:111966-114690 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~111966-114690 ParB PF08775.5 g119825.t1 - 0.016 15.4 3.8 0.024 14.9 2.5 1.4 1 1 0 1 1 1 0 ParB family | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:283739-284402 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~283739-284402 DUF1510 PF07423.6 g42287.t1 - 0.027 13.8 3.9 0.044 13.1 2.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:372218-376177 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~372218-376177 Herpes_DNAp_acc PF04929.7 g45450.t1 - 3.3 6.5 5.1 3.6 6.4 3.5 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:459238-459465 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~459238-459465 Plant_zn_clust PF10533.4 g80602.t1 - 0.018 14.6 0.6 0.03 13.9 0.4 1.5 1 0 0 1 1 1 0 Plant zinc cluster domain | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:140419-141762 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~140419-141762 FXR1P_C PF12235.3 g108674.t1 - 0.001 19.2 4 0.0013 18.8 2.8 1.2 1 0 0 1 1 1 1 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2448_contigs=3, transcript_loc=scaffold2448_contigs=3:840-1190 Augustus predicted protein sequence Tobacco scaffold2448_contigs=3~840-1190 Remorin_C PF03763.8 g104268.t1 - 1.1 8.8 27.5 1.3 8.5 19.1 1.2 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:355033-355302 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~355033-355302 zf-BED PF02892.10 g84353.t1 - 0.0028 17.3 2.4 0.0063 16.2 1.7 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1819_contigs=5, transcript_loc=scaffold1819_contigs=5:118852-119829 Augustus predicted protein sequence Tobacco scaffold1819_contigs=5~118852-119829 AalphaY_MDB PF04611.7 g69189.t1 - 0.12 12.2 0.8 0.24 11.2 0.1 1.6 1 1 1 2 2 2 0 Mating type protein A alpha Y mating type dependent binding region | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:645182-645607 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~645182-645607 DUF2476 PF10630.4 g24592.t1 - 1.2 8.9 7.3 1.5 8.5 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2476) | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:50800-54086 Augustus predicted protein sequence Tobacco scaffold674_contigs=5~50800-54086 PilX PF13681.1 g83357.t1 - 0.14 12.6 0.3 0.15 12.5 0.2 1.1 1 0 0 1 1 1 0 Type IV pilus assembly protein PilX C-term | Ref_seq=scaffold1790_contigs=2, transcript_loc=scaffold1790_contigs=2:17665-18026 Augustus predicted protein sequence Tobacco scaffold1790_contigs=2~17665-18026 DUF3548 PF12068.3 g34478.t1 - 0.046 13 0.2 0.06 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3548) | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:117616-119688 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~117616-119688 Gemini_AL2 PF01440.11 g62981.t1 - 0.012 15.6 0 0.02 14.9 0 1.2 1 0 0 1 1 1 0 Geminivirus AL2 protein | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:148824-149287 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~148824-149287 Peptidase_M15 PF01427.12 g41449.t1 - 0.0032 17.1 0 0.0034 17 0 1.1 1 0 0 1 1 1 1 D-ala-D-ala dipeptidase | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:346213-346539 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~346213-346539 PBP_sp32 PF07222.7 g108091.t1 - 0.43 9.7 4.2 0.64 9.1 2.9 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:247961-248743 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~247961-248743 Retrotrans_gag PF03732.12 g120560.t1 - 0.0022 18 0.1 0.0033 17.4 0.1 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:221910-224012 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~221910-224012 zf-CCHC PF00098.18 g21624.t1 - 0.00007 22.5 0.7 0.00011 21.9 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:168487-169164 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~168487-169164 DUF2092 PF09865.4 g91247.t1 - 0.081 11.9 0.1 0.16 11 0.1 1.5 1 1 0 1 1 1 0 Predicted periplasmic protein (DUF2092) | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:84112-84622 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~84112-84622 Abhydrolase_9_N PF15420.1 g100708.t1 - 0.0077 16 2.5 0.0097 15.6 1.7 1.2 1 0 0 1 1 1 1 Alpha/beta-hydrolase family N-terminus | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:277241-278708 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~277241-278708 Bin3 PF06859.7 g56437.t1 - 0.11 12.5 0 0.13 12.2 0 1.1 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:132530-132943 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~132530-132943 CASP_C PF08172.7 g113540.t1 - 0.14 11.1 0.1 0.16 10.9 0 1.1 1 0 0 1 1 1 0 CASP C terminal | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:30298-30567 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~30298-30567 5-nucleotidase PF06189.7 g20839.t1 - 0.039 12.7 0 0.043 12.6 0 1.1 1 0 0 1 1 1 0 5'-nucleotidase | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:346511-346816 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~346511-346816 DUF605 PF04652.11 g60009.t1 - 0.12 11.7 1 0.14 11.5 0.7 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:54292-54981 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~54292-54981 Mg_chelatase_2 PF13335.1 g89113.t1 - 0.073 13.4 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:81475-83652 Augustus predicted protein sequence Tobacco scaffold1939_contigs=7~81475-83652 Secretin_N_2 PF07655.8 g50190.t1 - 0.55 10.6 15.1 0.67 10.3 10.5 1.1 1 0 0 1 1 1 0 Secretin N-terminal domain | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:98888-99202 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~98888-99202 HR1 PF02185.11 g50784.t1 - 0.092 12.5 5.2 0.2 11.4 0.9 2.3 1 1 1 2 2 2 0 Hr1 repeat | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:129617-130220 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~129617-130220 DUF4219 PF13961.1 g84459.t1 - 0.00029 20.1 0.6 0.00047 19.4 0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:30422-30739 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~30422-30739 APG6 PF04111.7 g56454.t1 - 0.0023 17 1.2 0.0024 16.9 0.8 1 1 0 0 1 1 1 1 Autophagy protein Apg6 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:164227-164655 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~164227-164655 DBD_Tnp_Mut PF03108.10 g4919.t1 - 0.000062 22.4 0.7 0.000062 22.4 0.5 1.6 2 1 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold266_contigs=2, transcript_loc=scaffold266_contigs=2:87816-88052 Augustus predicted protein sequence Tobacco scaffold266_contigs=2~87816-88052 DUF608 PF04685.8 g66230.t1 - 0.092 11.4 0.1 0.097 11.3 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF608 | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:15530-16822 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~15530-16822 UCR_Fe-S_N PF10399.4 g105123.t1 - 0.13 11.4 0.1 0.2 10.8 0 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:356591-356851 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~356591-356851 DUF765 PF05570.6 g28840.t1 - 0.016 15.1 0.7 4 7.4 0.6 2.7 2 1 0 2 2 2 0 Circovirus protein of unknown function (DUF765) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:415682-418223 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~415682-418223 ATHILA PF03078.10 g50207.t1 - 0.015 13.9 0 0.017 13.7 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:143732-145678 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~143732-145678 PadR PF03551.9 g78897.t1 - 0.13 12 0.1 5.6 6.7 0 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:2635-2928 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~2635-2928 MSSP PF03940.8 g6374.t1 - 3.3 7.1 7.9 0.63 9.4 0.8 2.1 2 0 0 2 2 2 0 Male specific sperm protein | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:4991-5263 Augustus predicted protein sequence Tobacco scaffold296_contigs=6~4991-5263 DUF1211 PF06736.6 g122444.t1 - 0.11 12.6 0.2 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1211) | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:24889-25326 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~24889-25326 NESP55 PF06390.7 g74167.t1 - 0.046 13.1 5.7 0.066 12.5 3.9 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:652408-652821 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~652408-652821 Chromo PF00385.19 g71499.t1 - 7.7E-009 35 0.4 7.7E-009 35 0.3 1.8 1 1 1 2 2 2 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:143575-143823 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~143575-143823 DUF3954 PF13128.1 g7146.t1 - 0.018 14.4 0 0.03 13.7 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3954) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:157261-157751 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~157261-157751 Entericidin PF08085.6 g20977.t1 - 0.016 14.9 0.3 0.032 13.9 0.2 1.5 1 0 0 1 1 1 0 Entericidin EcnA/B family | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:167319-168593 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~167319-168593 UBN2_2 PF14227.1 g84910.t1 - 0.083 12.4 0 0.1 12.1 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:98628-98897 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~98628-98897 SH3_4 PF06347.8 g110158.t1 - 0.11 12 0.1 17 5 0 2.3 2 0 0 2 2 2 0 Bacterial SH3 domain | Ref_seq=scaffold2527_contigs=1, transcript_loc=scaffold2527_contigs=1:28236-28762 Augustus predicted protein sequence Tobacco scaffold2527_contigs=1~28236-28762 Bap31 PF05529.7 g89380.t1 - 0.089 12.2 4.3 0.12 11.7 3 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:17012-18277 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~17012-18277 DUF719 PF05334.8 g115308.t1 - 0.0028 17.7 0 0.0031 17.5 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF719) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:58434-58984 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~58434-58984 vWF_A PF12450.3 g92436.t1 - 0.067 12.9 0.1 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 von Willebrand factor | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:48484-48696 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~48484-48696 CobT PF06213.7 g3193.t1 - 0.015 14.4 8 0.017 14.3 5.5 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold227_contigs=2, transcript_loc=scaffold227_contigs=2:200303-201216 Augustus predicted protein sequence Tobacco scaffold227_contigs=2~200303-201216 RNA_pol_3_Rpc31 PF11705.3 g94517.t1 - 0.95 9.3 7.4 0.96 9.3 5.1 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:69812-70039 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~69812-70039 SAM_PNT PF02198.11 g77120.t1 - 0.0077 15.9 0 0.012 15.3 0 1.2 1 0 0 1 1 1 1 Sterile alpha motif (SAM)/Pointed domain | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:57054-58199 Augustus predicted protein sequence Tobacco scaffold1626_contigs=2~57054-58199 MtrF PF09472.5 g111723.t1 - 0.098 11.9 0.1 0.15 11.3 0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:57679-58116 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~57679-58116 PKI PF02827.11 g47160.t1 - 5.4 7.1 8.2 0.36 10.9 0.6 2.2 2 0 0 2 2 2 0 cAMP-dependent protein kinase inhibitor | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:139604-140119 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~139604-140119 GATase PF00117.23 g115654.t1 - 0.11 11.9 0.1 0.12 11.8 0.1 1.1 1 0 0 1 1 1 0 Glutamine amidotransferase class-I | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:891219-891575 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~891219-891575 TFIIE_alpha PF02002.12 g88571.t1 - 0.013 15 0.8 4.4 6.8 0 2.2 1 1 0 2 2 2 0 TFIIE alpha subunit | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:58319-59972 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~58319-59972 Melittin PF01372.12 g124808.t1 - 5 6.5 9.8 7.2 6 0.1 3.6 4 0 0 4 4 4 0 Melittin | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:195121-195420 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~195121-195420 SlyX PF04102.7 g101326.t1 - 0.094 13.1 1.1 0.7 10.3 0.3 2.1 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:39526-40121 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~39526-40121 PI-PLC-X PF00388.14 g31953.t1 - 0.06 12.7 0 0.07 12.5 0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:42962-43674 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~42962-43674 WT1 PF02165.10 g98363.t1 - 0.022 13.8 0.1 0.025 13.6 0 1 1 0 0 1 1 1 0 Wilm's tumour protein | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:11931-12212 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~11931-12212 Apolipoprotein PF01442.13 g86290.t1 - 0.00076 19 1.2 0.00089 18.8 0.8 1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:54140-54424 Augustus predicted protein sequence Tobacco scaffold1843_contigs=11~54140-54424 FlxA PF14282.1 g76309.t1 - 0.015 15.2 0.1 0.015 15.2 0.1 1.6 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:148740-151049 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~148740-151049 GRP PF07172.6 g34072.t1 - 0.0028 18.1 0.1 0.0028 18 0.1 1.1 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold842_contigs=5, transcript_loc=scaffold842_contigs=5:7221-8494 Augustus predicted protein sequence Tobacco scaffold842_contigs=5~7221-8494 AvrRpt-cleavage PF05627.6 g3127.t1 - 0.021 13.8 0 0.032 13.2 0 1.3 1 0 0 1 1 1 0 Cleavage site for pathogenic type III effector avirulence factor Avr | Ref_seq=scaffold226_contigs=4, transcript_loc=scaffold226_contigs=4:48736-49537 Augustus predicted protein sequence Tobacco scaffold226_contigs=4~48736-49537 CCDC-167 PF15188.1 g47897.t1 - 0.071 13 0.3 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold1102_contigs=2, transcript_loc=scaffold1102_contigs=2:2183-7622 Augustus predicted protein sequence Tobacco scaffold1102_contigs=2~2183-7622 ATHILA PF03078.10 g115845.t1 - 0.00000012 30.7 0 0.0000039 25.7 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:89812-90198 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~89812-90198 PMD PF10536.4 g39861.t1 - 0.000068 22 0.5 0.00016 20.7 0.1 1.7 1 1 1 2 2 2 1 Plant mobile domain | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:409926-411833 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~409926-411833 DBD_Tnp_Mut PF03108.10 g38940.t1 - 0.0000019 27.3 0 0.0000031 26.6 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold946_contigs=4, transcript_loc=scaffold946_contigs=4:3043-3951 Augustus predicted protein sequence Tobacco scaffold946_contigs=4~3043-3951 Toxin_22 PF08092.6 g115110.t1 - 0.094 12.5 0.4 0.17 11.7 0.3 1.4 1 0 0 1 1 1 0 Magi peptide toxin family | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:17829-19636 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~17829-19636 Herpes_LMP1 PF05297.6 g62917.t1 - 6.3 5.6 5.7 9.9 4.9 3.8 1.7 1 1 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:27097-27477 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~27097-27477 DUF724 PF05266.9 g30662.t1 - 0.0014 18.2 12.5 0.0015 18.2 8.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF724) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:114581-115072 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~114581-115072 KIF1B PF12423.3 g36375.t1 - 0.8 9.7 3.1 28 4.8 1.1 2.5 2 1 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:26551-26841 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~26551-26841 RapA_C PF12137.3 g62318.t1 - 0.033 13 0.9 0.054 12.3 0.1 1.6 1 1 0 1 1 1 0 RNA polymerase recycling family C-terminal | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:424072-424509 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~424072-424509 Apc4 PF12896.2 g125708.t1 - 0.061 12.6 0.4 5.6 6.2 0 2.1 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:104041-105104 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~104041-105104 Ipi1_N PF12333.3 g24199.t1 - 0.026 14.4 0 0.046 13.6 0 1.5 1 0 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:147648-148259 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~147648-148259 FHA PF00498.21 g19949.t1 - 0.039 14 0 0.047 13.8 0 1.2 1 0 0 1 1 1 0 FHA domain | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:111340-111579 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~111340-111579 RinB PF06116.7 g102464.t1 - 3.3 7.3 5.8 2.1 8 3.1 1.4 1 1 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold2251_contigs=17, transcript_loc=scaffold2251_contigs=17:51467-51700 Augustus predicted protein sequence Tobacco scaffold2251_contigs=17~51467-51700 RVT_3 PF13456.1 g12485.t1 - 0.00056 19.6 0 0.0011 18.7 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:248591-251416 Augustus predicted protein sequence Tobacco scaffold427_contigs=11~248591-251416 DUF3432 PF11914.3 g62600.t1 - 0.038 14 4.1 0.083 12.9 2.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3432) | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:38857-39350 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~38857-39350 DUF605 PF04652.11 g58878.t1 - 3.3 7 12.1 3.5 6.9 8.4 1.2 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:121580-122386 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~121580-122386 DUF443 PF04276.7 g106675.t1 - 0.031 13.6 4.3 0.033 13.6 2.9 1 1 0 0 1 1 1 0 Protein of unknown function (DUF443) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:345441-345822 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~345441-345822 ASF1_hist_chap PF04729.8 g18391.t1 - 0.065 12.8 0 0.1 12.2 0 1.3 1 0 0 1 1 1 0 ASF1 like histone chaperone | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:3620-5935 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~3620-5935 DUF3903 PF13043.1 g64865.t1 - 2.6 7.6 4.2 3.3 7.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3903) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:255567-255968 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~255567-255968 Exostosin PF03016.10 g30570.t1 - 0.054 12.5 0 0.055 12.4 0 1.1 1 0 0 1 1 1 0 Exostosin family | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1188341-1188577 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1188341-1188577 Viral_Beta_CD PF04530.7 g3588.t1 - 2.7 8.1 5.8 4.6 7.4 4 1.4 1 1 0 1 1 1 0 Viral Beta C/D like family | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:50041-51436 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~50041-51436 Transposase_22 PF02994.9 g90330.t1 - 0.01 14.4 0.2 0.012 14.1 0.1 1.1 1 0 0 1 1 1 1 L1 transposable element | Ref_seq=scaffold1961_contigs=3, transcript_loc=scaffold1961_contigs=3:12740-13225 Augustus predicted protein sequence Tobacco scaffold1961_contigs=3~12740-13225 zf-BED PF02892.10 g67922.t1 - 0.0059 16.3 0.1 0.016 14.9 0.1 1.7 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1461_contigs=5, transcript_loc=scaffold1461_contigs=5:43728-44402 Augustus predicted protein sequence Tobacco scaffold1461_contigs=5~43728-44402 Chitin_bind_1 PF00187.14 g61458.t1 - 2.2 8.3 8.9 3 7.8 0.3 2.4 2 0 0 2 2 2 0 Chitin recognition protein | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:177506-179348 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~177506-179348 Ricin_B_lectin PF00652.17 g93630.t1 - 0.12 12.4 0.3 0.18 11.8 0.1 1.4 1 1 0 1 1 1 0 Ricin-type beta-trefoil lectin domain | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:248918-249384 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~248918-249384 KN_motif PF12075.3 g53747.t1 - 0.076 12.8 0 17 5.3 0 2.3 2 0 0 2 2 2 0 KN motif | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:12555-13145 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~12555-13145 RRM_DME PF15628.1 g123338.t1 - 0.072 12.7 0 0.083 12.5 0 1.1 1 0 0 1 1 1 0 RRM in Demeter | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:188144-188679 Augustus predicted protein sequence Tobacco scaffold2756_contigs=5~188144-188679 DUF1081 PF06448.6 g97167.t1 - 0.039 13.8 0 0.045 13.6 0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1081) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:179974-180234 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~179974-180234 DUF4172 PF13776.1 g5113.t1 - 0.078 13 0 10 6.2 0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:24622-25710 Augustus predicted protein sequence Tobacco scaffold271_contigs=10~24622-25710 DUF4459 PF14673.1 g12509.t1 - 0.069 12.8 0 0.082 12.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4459) | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:35136-35630 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~35136-35630 HSP20 PF00011.16 g28634.t1 - 0.0013 18.5 0 0.0015 18.3 0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:1790-3133 Augustus predicted protein sequence Tobacco scaffold750_contigs=7~1790-3133 OAD_gamma PF04277.8 g28101.t1 - 0.31 11.4 1.4 0.73 10.2 0.5 1.9 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:14178-15416 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~14178-15416 RNase_H2-Ydr279 PF09468.5 g28160.t1 - 0.0028 16.9 11.9 0.0028 16.9 8.3 2.5 2 0 0 2 2 2 1 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:6667-8985 Augustus predicted protein sequence Tobacco scaffold740_contigs=1~6667-8985 LMSTEN PF07988.7 g106273.t1 - 0.042 13.1 0.1 0.082 12.2 0.1 1.4 1 0 0 1 1 1 0 LMSTEN motif | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:58977-59240 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~58977-59240 NPCBM_assoc PF10633.4 g83660.t1 - 0.044 13.8 0.1 0.065 13.2 0 1.2 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:102905-103234 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~102905-103234 PDDEXK_1 PF12705.2 g111149.t1 - 0.011 15.1 1.1 0.014 14.8 0.7 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:143618-144105 Augustus predicted protein sequence Tobacco scaffold2580_contigs=9~143618-144105 DUF1540 PF07561.6 g106565.t1 - 0.24 11.4 1.2 0.25 11.3 0 1.8 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1540) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:85633-86307 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~85633-86307 H-K_ATPase_N PF09040.6 g12230.t1 - 0.056 13.5 0.5 0.075 13.1 0.4 1.3 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:368696-368920 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~368696-368920 NTS PF15447.1 g64841.t1 - 0.071 13.5 0.2 16 5.9 0 2.2 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:128328-129006 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~128328-129006 E1-N PF14463.1 g61307.t1 - 0.14 11.7 0.6 0.16 11.5 0.4 1.1 1 0 0 1 1 1 0 E1 N-terminal domain | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:155313-155773 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~155313-155773 DUF3717 PF12512.3 g11882.t1 - 0.088 12.4 0 0.15 11.6 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3717) | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:150572-152168 Augustus predicted protein sequence Tobacco scaffold416_contigs=9~150572-152168 Hemolysin_N PF12563.3 g111476.t1 - 0.015 14.7 1.1 0.039 13.3 0.1 1.9 1 1 0 2 2 2 0 Hemolytic toxin N terminal | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:594714-595490 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~594714-595490 DUF1344 PF07076.6 g54938.t1 - 0.37 10.3 3.4 5.4 6.6 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1344) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:180932-182361 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~180932-182361 zf-RING-like PF08746.6 g8454.t1 - 0.0018 18.2 0.2 0.004 17.1 0.2 1.6 1 0 0 1 1 1 1 RING-like domain | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:117877-118373 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~117877-118373 DUF4219 PF13961.1 g89434.t1 - 0.00059 19.1 0.1 0.00084 18.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:151215-151433 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~151215-151433 Baculo_11_kDa PF06143.6 g21121.t1 - 0.043 13.1 1.6 0.071 12.4 1.1 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:509530-511166 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~509530-511166 IP_trans PF02121.13 g88676.t1 - 0.033 13.3 0.5 0.049 12.7 0.3 1.3 1 0 0 1 1 1 0 Phosphatidylinositol transfer protein | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:143714-144172 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~143714-144172 Big_3_3 PF13750.1 g104274.t1 - 0.052 12.9 0.1 0.061 12.7 0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:360693-361055 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~360693-361055 DUF2135 PF09906.4 g27508.t1 - 0.076 12.9 0 16 5.5 0 2.5 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2135) | Ref_seq=scaffold727_contigs=8, transcript_loc=scaffold727_contigs=8:158429-159090 Augustus predicted protein sequence Tobacco scaffold727_contigs=8~158429-159090 zf-CCHC PF00098.18 g47626.t1 - 0.0017 18.1 0.2 0.0031 17.3 0.1 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:366611-367435 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~366611-367435 ATG16 PF08614.6 g1903.t1 - 0.000011 25.3 4.4 0.000017 24.7 3.1 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) | Ref_seq=scaffold196_contigs=2, transcript_loc=scaffold196_contigs=2:33338-36254 Augustus predicted protein sequence Tobacco scaffold196_contigs=2~33338-36254 Inhibitor_I71 PF12628.2 g4833.t1 - 0.17 11.4 0.4 12 5.5 0 2.1 1 1 1 2 2 2 0 Falstatin, cysteine peptidase inhibitor | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:139649-141351 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~139649-141351 RAP1 PF07218.6 g65886.t1 - 0.038 12.1 0.5 0.039 12 0.4 1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:377814-380291 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~377814-380291 zf-CCHC PF00098.18 g36027.t1 - 0.0019 18 0.4 0.0028 17.4 0.3 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:127636-128408 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~127636-128408 zf-CCHC PF00098.18 g15931.t1 - 0.000088 22.2 1 0.00023 20.9 0.7 1.8 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:98602-99354 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~98602-99354 DUF1985 PF09331.6 g68260.t1 - 0.00004 23.4 0 0.000061 22.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:45391-46668 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~45391-46668 Herpes_US12 PF05363.7 g77289.t1 - 0.0091 16.4 0.1 0.015 15.8 0.1 1.4 1 0 0 1 1 1 1 Herpesvirus US12 family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:247033-247437 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~247033-247437 DUF2862 PF11061.3 g66215.t1 - 0.077 12.7 0 0.092 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) | Ref_seq=scaffold1437_contigs=6, transcript_loc=scaffold1437_contigs=6:225477-226371 Augustus predicted protein sequence Tobacco scaffold1437_contigs=6~225477-226371 DBD_Tnp_Mut PF03108.10 g70648.t1 - 0.0000003 29.9 0.1 0.00000046 29.3 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:735228-736800 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~735228-736800 LMBR1 PF04791.11 g110224.t1 - 0.71 8.3 2.8 0.78 8.2 2 1 1 0 0 1 1 1 0 LMBR1-like membrane protein | Ref_seq=scaffold2532_contigs=1, transcript_loc=scaffold2532_contigs=1:1045-1341 Augustus predicted protein sequence Tobacco scaffold2532_contigs=1~1045-1341 Neurokinin_B PF03823.9 g21841.t1 - 2.1 8.1 5.8 17 5.2 0.3 2.5 2 0 0 2 2 2 0 Neurokinin B | Ref_seq=scaffold601_contigs=9, transcript_loc=scaffold601_contigs=9:36572-39132 Augustus predicted protein sequence Tobacco scaffold601_contigs=9~36572-39132 CENP-B_dimeris PF09026.5 g37003.t1 - 0.025 14.7 1.7 0.025 14.7 1.2 1.7 2 0 0 2 2 2 0 Centromere protein B dimerisation domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:93430-95408 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~93430-95408 TraA PF05513.6 g41360.t1 - 0.073 13.2 0 0.086 13 0 1.1 1 0 0 1 1 1 0 TraA | Ref_seq=scaffold988_contigs=4, transcript_loc=scaffold988_contigs=4:54266-55090 Augustus predicted protein sequence Tobacco scaffold988_contigs=4~54266-55090 CAP_N PF01213.14 g12134.t1 - 0.13 11.5 0.2 0.13 11.5 0.1 1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:33638-35217 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~33638-35217 PriCT_2 PF08707.6 g67723.t1 - 0.098 12.5 0.3 2.1 8.2 0.2 2.4 1 1 0 1 1 1 0 Primase C terminal 2 (PriCT-2) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:118972-120317 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~118972-120317 UBN2_3 PF14244.1 g120055.t1 - 0.00000053 29.3 0.2 0.00000061 29.1 0.2 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:349715-349963 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~349715-349963 DUF1495 PF07381.6 g93461.t1 - 0.069 12.8 0 12 5.6 0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) | Ref_seq=scaffold2019_contigs=3, transcript_loc=scaffold2019_contigs=3:2475-3077 Augustus predicted protein sequence Tobacco scaffold2019_contigs=3~2475-3077 DUF1981 PF09324.5 g95603.t1 - 0.0077 15.7 0 0.0077 15.7 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1981) | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:127535-127795 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~127535-127795 UBN2 PF14223.1 g31492.t1 - 0.051 13.3 0 0.078 12.7 0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:196216-198043 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~196216-198043 Ecm33 PF12454.3 g89384.t1 - 0.062 13.1 0.1 0.085 12.7 0 1.2 1 0 0 1 1 1 0 GPI-anchored cell wall organization protein | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:26659-26969 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~26659-26969 Vac_Fusion PF02346.11 g44118.t1 - 0.043 13.2 0 0.15 11.5 0 1.8 2 0 0 2 2 2 0 Chordopoxvirus fusion protein | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:41828-42175 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~41828-42175 YdjO PF14169.1 g61278.t1 - 0.068 12.6 0.2 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:81436-82181 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~81436-82181 UpxZ PF06603.6 g80059.t1 - 0.019 14.9 0 0.043 13.8 0 1.5 2 0 0 2 2 2 0 UpxZ family of transcription anti-terminator antagonists | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:7110-9245 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~7110-9245 G6B PF15096.1 g44397.t1 - 0.0015 18 0.4 0.0017 17.9 0.3 1 1 0 0 1 1 1 1 G6B family | Ref_seq=scaffold1036_contigs=2, transcript_loc=scaffold1036_contigs=2:2280-2498 Augustus predicted protein sequence Tobacco scaffold1036_contigs=2~2280-2498 CCDC144C PF14915.1 g117877.t1 - 0.0017 17.3 7.7 0.0019 17.2 5.3 1 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:160454-160759 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~160454-160759 U79_P34 PF03064.11 g97024.t1 - 0.00092 18.7 5.4 0.0012 18.4 3.7 1.1 1 0 0 1 1 1 1 HSV U79 / HCMV P34 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:341893-342297 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~341893-342297 DUF1918 PF08940.6 g42461.t1 - 0.13 11.6 0 0.65 9.3 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1918) | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:96243-98594 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~96243-98594 Peptidase_C39 PF03412.10 g55800.t1 - 0.0025 17.6 0.4 0.0031 17.3 0.2 1.1 1 0 0 1 1 1 1 Peptidase C39 family | Ref_seq=scaffold1227_contigs=6, transcript_loc=scaffold1227_contigs=6:16952-17248 Augustus predicted protein sequence Tobacco scaffold1227_contigs=6~16952-17248 YlaC PF10777.4 g81575.t1 - 0.049 13.2 0.2 0.051 13.1 0.1 1.1 1 0 0 1 1 1 0 Inner membrane protein YlaC | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:249503-249721 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~249503-249721 DUF1335 PF07056.6 g41141.t1 - 0.067 12.9 0 0.083 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1335) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:743377-743634 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~743377-743634 DUF1957 PF09210.6 g5372.t1 - 0.07 13.1 0 0.085 12.9 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:116570-116776 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~116570-116776 zf-C4_ClpX PF06689.8 g57928.t1 - 0.11 12 0.2 0.56 9.7 0.1 2 2 0 0 2 2 2 0 ClpX C4-type zinc finger | Ref_seq=scaffold1262_contigs=1, transcript_loc=scaffold1262_contigs=1:22527-24111 Augustus predicted protein sequence Tobacco scaffold1262_contigs=1~22527-24111 Herpes_LMP2 PF07415.6 g84381.t1 - 3.2 6.2 5.8 9.1 4.7 4.2 1.5 1 1 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:70604-71111 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~70604-71111 HELP PF03451.9 g101919.t1 - 0.028 13.9 0 0.064 12.7 0 1.5 2 0 0 2 2 2 0 HELP motif | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:69380-69742 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~69380-69742 zf-CCHC PF00098.18 g29799.t1 - 7 6.7 6.4 1.1 9.3 1.6 1.8 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:135586-135978 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~135586-135978 Retrotrans_gag PF03732.12 g124403.t1 - 0.048 13.7 0.1 0.31 11.1 0 2.2 2 1 1 3 3 3 0 Retrotransposon gag protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2147700-2148224 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2147700-2148224 zf-CCHC PF00098.18 g39299.t1 - 0.081 12.8 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold951_contigs=4, transcript_loc=scaffold951_contigs=4:29320-29814 Augustus predicted protein sequence Tobacco scaffold951_contigs=4~29320-29814 Sec61_beta PF03911.11 g57634.t1 - 0.031 14 0 0.059 13.1 0 1.5 1 1 0 1 1 1 0 Sec61beta family | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:74882-75533 Augustus predicted protein sequence Tobacco scaffold1253_contigs=5~74882-75533 PBP_sp32 PF07222.7 g24809.t1 - 0.066 12.3 3.6 0.1 11.7 2.5 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:49938-50507 Augustus predicted protein sequence Tobacco scaffold677_contigs=5~49938-50507 MUG113 PF13455.1 g93305.t1 - 0.019 15.4 0.6 0.03 14.7 0.4 1.4 1 0 0 1 1 1 0 Meiotically up-regulated gene 113 | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:265307-265933 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~265307-265933 AXH PF08517.7 g24292.t1 - 0.031 14.4 0.1 0.059 13.5 0.1 1.5 1 1 0 1 1 1 0 Ataxin-1 and HBP1 module (AXH) | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:64619-64909 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~64619-64909 Whi5 PF08528.6 g3850.t1 - 0.13 11.9 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Whi5 like | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:126900-127379 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~126900-127379 DUF3624 PF12292.3 g1213.t1 - 0.079 13.3 0.1 0.15 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) | Ref_seq=scaffold128_contigs=2, transcript_loc=scaffold128_contigs=2:37096-38636 Augustus predicted protein sequence Tobacco scaffold128_contigs=2~37096-38636 Neisseria_TspB PF05616.8 g41997.t1 - 0.22 9.8 3.8 0.31 9.3 2.6 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:3290-6084 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~3290-6084 Spc7_C2 PF15577.1 g106722.t1 - 0.12 12 0.1 0.26 10.9 0 1.5 2 0 0 2 2 2 0 Spc7_C2 | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:441996-442408 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~441996-442408 GRP PF07172.6 g33413.t1 - 0.03 14.7 43.5 0.03 14.7 30.2 8.1 1 1 5 6 6 6 0 Glycine rich protein family | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:91481-92679 Augustus predicted protein sequence Tobacco scaffold831_contigs=10~91481-92679 zf-RVT PF13966.1 g48799.t1 - 0.011 16 0.3 0.022 15 0.1 1.7 1 1 1 2 2 2 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:390429-390728 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~390429-390728 DUF463 PF04317.7 g125649.t1 - 0.049 12.2 0.1 0.061 11.8 0.1 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:114823-117063 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~114823-117063 ATHILA PF03078.10 g49754.t1 - 0.11 11 0.3 0.11 10.9 0.2 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:85546-85911 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~85546-85911 zf-CCHC PF00098.18 g127155.t1 - 0.048 13.6 6.1 0.079 12.9 4.3 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:5977-6186 Augustus predicted protein sequence Tobacco scaffold2815_contigs=1~5977-6186 Phage_G PF02306.10 g39229.t1 - 0.082 12.5 0 0.13 11.8 0 1.3 1 0 0 1 1 1 0 Major spike protein (G protein) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:180852-181583 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~180852-181583 KIF1B PF12423.3 g20080.t1 - 0.18 11.8 1.4 1 9.4 0.1 2.1 2 0 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:52203-52454 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~52203-52454 PRC PF05239.11 g64105.t1 - 0.13 12 0.2 0.76 9.6 0.1 2 1 1 2 3 3 3 0 PRC-barrel domain | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:357226-357801 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~357226-357801 PCIF1_WW PF12237.3 g113521.t1 - 0.059 12.6 1.6 6.4 6 0.1 2.9 1 1 2 3 3 3 0 Phosphorylated CTD interacting factor 1 WW domain | Ref_seq=scaffold2634_contigs=4, transcript_loc=scaffold2634_contigs=4:24885-25148 Augustus predicted protein sequence Tobacco scaffold2634_contigs=4~24885-25148 CCDC155 PF14662.1 g8319.t1 - 0.0017 18 0.4 0.0017 17.9 0.3 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:168295-168534 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~168295-168534 RVT_3 PF13456.1 g55337.t1 - 0.0017 18 0 0.002 17.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:158746-159018 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~158746-159018 Dimer_Tnp_hAT PF05699.9 g41918.t1 - 0.0014 18.2 0 0.0029 17.1 0 1.5 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:231572-232354 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~231572-232354 Cwf_Cwc_15 PF04889.7 g45445.t1 - 0.014 15 8.7 0.02 14.5 6 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:446908-449217 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~446908-449217 LZ_Tnp_IS66 PF13007.2 g51134.t1 - 4.8 7.9 8.3 6.2 7.5 5.1 1.7 1 1 1 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:15102-15448 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~15102-15448 GP41 PF00517.12 g102487.t1 - 0.015 14.8 0.6 0.016 14.7 0.4 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:14099-14404 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~14099-14404 hNIFK_binding PF12196.3 g114794.t1 - 0.13 11.6 1.3 0.23 10.8 0.9 1.4 1 0 0 1 1 1 0 FHA Ki67 binding domain of hNIFK | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:125403-125723 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~125403-125723 DUF3674 PF12426.3 g22159.t1 - 1 8.8 3.1 1.1 8.7 0.2 2.2 1 1 1 2 2 2 0 RNA dependent RNA polymerase | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:54809-55273 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~54809-55273 MttA_Hcf106 PF02416.11 g29057.t1 - 0.13 11.3 0 0.2 10.7 0 1.2 1 0 0 1 1 1 0 mttA/Hcf106 family | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:1600-1860 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~1600-1860 Glypican PF01153.14 g101211.t1 - 0.15 10.6 0 0.16 10.5 0 1.1 1 0 0 1 1 1 0 Glypican | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:28627-29550 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~28627-29550 PriCT_2 PF08707.6 g129317.t1 - 0.13 12.1 0 0.2 11.5 0 1.4 1 0 0 1 1 1 0 Primase C terminal 2 (PriCT-2) | Ref_seq=scaffold2938_contigs=1, transcript_loc=scaffold2938_contigs=1:17202-17495 Augustus predicted protein sequence Tobacco scaffold2938_contigs=1~17202-17495 IBV_3B PF03622.8 g130219.t1 - 0.00000004 33.1 0 0.013 15.4 0 2.3 2 0 0 2 2 2 2 IBV 3B protein | Ref_seq=scaffold3678_contigs=1, transcript_loc=scaffold3678_contigs=1:1-1633 Augustus predicted protein sequence Tobacco scaffold3678_contigs=1~1-1633 DUF2694 PF10904.3 g124819.t1 - 0.12 12.4 0 0.92 9.5 0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:211249-211599 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~211249-211599 zf-CCHC PF00098.18 g102122.t1 - 0.025 14.5 0.1 0.036 14 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:138037-138240 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~138037-138240 Sugarporin_N PF11471.3 g26756.t1 - 0.0057 16.2 0.3 0.0079 15.8 0.2 1.2 1 0 0 1 1 1 1 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:270222-270690 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~270222-270690 Prefoldin_3 PF13758.1 g22640.t1 - 0.19 11.5 0.6 2.4 7.9 0.1 2.4 2 0 0 2 2 2 0 Prefoldin subunit | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:58570-60247 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~58570-60247 zf-C4 PF00105.13 g86803.t1 - 0.00011 22.3 2.2 0.00018 21.6 1.5 1.3 1 1 0 1 1 1 1 Zinc finger, C4 type (two domains) | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:83947-84165 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~83947-84165 TAF1_subA PF14929.1 g54077.t1 - 0.15 10.4 0 0.17 10.3 0 1 1 0 0 1 1 1 0 TAF RNA Polymerase I subunit A | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:231553-231872 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~231553-231872 GRA6 PF05084.8 g28891.t1 - 4 6.8 6.5 0.24 10.9 0.8 1.6 2 0 0 2 2 2 0 Granule antigen protein (GRA6) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:563378-564398 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~563378-564398 DUF572 PF04502.8 g25407.t1 - 0.052 12.7 4.6 0.062 12.5 3.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:233228-236102 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~233228-236102 CENP-W PF15510.1 g33003.t1 - 0.041 13.8 0.9 0.074 13 0.6 1.4 1 0 0 1 1 1 0 Centromere kinetochore component W | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:157229-157720 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~157229-157720 DUF1639 PF07797.9 g92434.t1 - 0.13 11.6 0 0.59 9.5 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1639) | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:46652-48014 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~46652-48014 MORN PF02493.15 g98389.t1 - 0.00000012 31 7.9 0.25 11.1 0.1 4.2 4 0 0 4 4 4 3 MORN repeat | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:50475-52196 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~50475-52196 TrmB PF01978.14 g25985.t1 - 0.053 13.2 0.1 0.064 12.9 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:235366-235599 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~235366-235599 Peptidase_A3 PF02160.10 g38388.t1 - 0.029 13.9 0 0.041 13.4 0 1.2 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:137165-137470 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~137165-137470 CedA PF10729.4 g19619.t1 - 0.01 15.3 0 0.018 14.5 0 1.4 1 0 0 1 1 1 0 Cell division activator CedA | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:141279-141701 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~141279-141701 HTH_29 PF13551.1 g115286.t1 - 0.065 13.3 0 13 5.9 0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:397839-398168 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~397839-398168 Fzo_mitofusin PF04799.8 g109870.t1 - 1.9 7.8 3.4 15 4.9 0.9 2.5 2 1 1 3 3 3 0 fzo-like conserved region | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:380734-385561 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~380734-385561 Cut8_C PF08559.5 g38333.t1 - 0.13 12.1 0 0.18 11.6 0 1.3 1 1 0 1 1 1 0 Cut8 six-helix bundle | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:411772-412734 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~411772-412734 DsbC_N PF10411.4 g116215.t1 - 0.000003 26.3 0.2 0.081 12.1 0 2.2 2 0 0 2 2 2 2 Disulfide bond isomerase protein N-terminus | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:183232-184190 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~183232-184190 RR_TM4-6 PF06459.7 g89509.t1 - 0.069 13 0.2 0.088 12.6 0.1 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:172533-173180 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~172533-173180 AAA_23 PF13476.1 g39235.t1 - 0.00047 20.5 3.2 0.00064 20.1 2.2 1.2 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:186750-188525 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~186750-188525 zf-AD PF07776.10 g14932.t1 - 0.094 12.7 0.1 0.095 12.7 0 1.2 1 0 0 1 1 1 0 Zinc-finger associated domain (zf-AD) | Ref_seq=scaffold485_contigs=10, transcript_loc=scaffold485_contigs=10:15234-15890 Augustus predicted protein sequence Tobacco scaffold485_contigs=10~15234-15890 BRICHOS PF04089.9 g119367.t1 - 0.13 12.1 0.3 0.29 11 0.2 1.5 1 0 0 1 1 1 0 BRICHOS domain | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:602967-603836 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~602967-603836 IF2_assoc PF08364.6 g56128.t1 - 0.063 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:116920-117189 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~116920-117189 Spc7_C2 PF15577.1 g10849.t1 - 0.067 12.8 0.3 0.15 11.7 0 1.6 2 0 0 2 2 2 0 Spc7_C2 | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:11448-11855 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~11448-11855 Complex1_49kDa PF00346.14 g25759.t1 - 0.05 12.5 0 0.06 12.3 0 1 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:25284-26864 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~25284-26864 PMD PF10536.4 g111608.t1 - 0.00021 20.4 0 0.00025 20.1 0 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:32087-33638 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~32087-33638 DUF1056 PF06341.6 g70236.t1 - 2.6 8.1 4.8 8.5 6.4 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1056) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:114822-115130 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~114822-115130 zf-BED PF02892.10 g120870.t1 - 0.000000096 31.6 1.9 0.006 16.3 0.1 2.4 2 0 0 2 2 2 2 BED zinc finger | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:416933-417799 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~416933-417799 Prolamin_like PF05617.6 g78407.t1 - 0.0023 18 4.1 0.0049 16.9 2.8 1.8 1 1 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:844848-845174 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~844848-845174 TPR_MLP1_2 PF07926.7 g31613.t1 - 0.032 13.9 4.1 0.041 13.6 2.8 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:305736-306269 Augustus predicted protein sequence Tobacco scaffold797_contigs=11~305736-306269 HXXSHH PF07586.6 g126247.t1 - 0.0027 16.6 0.5 0.0036 16.2 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1552) | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:35905-37337 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~35905-37337 LpxC PF03331.8 g17699.t1 - 0.016 14.1 0.1 0.017 14.1 0.1 1 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:113058-113282 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~113058-113282 gag_pre-integrs PF13976.1 g76978.t1 - 0.032 13.8 3.2 0.43 10.2 2.2 2.2 1 1 0 1 1 1 0 GAG-pre-integrase domain | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:15085-15447 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~15085-15447 PC4 PF02229.11 g71630.t1 - 0.0079 15.4 0 0.012 14.7 0 1.3 1 0 0 1 1 1 1 Transcriptional Coactivator p15 (PC4) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:192165-192743 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~192165-192743 Meth_synt_2 PF01717.13 g38619.t1 - 0.13 11.1 0 0.16 10.9 0 1.1 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:207654-208937 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~207654-208937 GcrA PF07750.6 g44496.t1 - 0.039 14.1 1.5 0.42 10.7 1 2 1 1 0 1 1 1 0 GcrA cell cycle regulator | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:248793-249080 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~248793-249080 DUF3960 PF13142.1 g66259.t1 - 0.098 12.4 0 0.13 12 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:64785-65476 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~64785-65476 DUF3039 PF11238.3 g86262.t1 - 0.68 9.4 3.4 8.3 5.9 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3039) | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:3917-5256 Augustus predicted protein sequence Tobacco scaffold1843_contigs=11~3917-5256 Molybdop_Fe4S4 PF04879.11 g37369.t1 - 0.051 13.3 0.3 0.083 12.7 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:101202-101527 Augustus predicted protein sequence Tobacco scaffold924_contigs=4~101202-101527 UPF0547 PF10571.4 g21092.t1 - 0.038 13.7 0.3 0.25 11 0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:447425-448743 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~447425-448743 Adenyl_cycl_N PF12633.2 g14504.t1 - 0.11 11.9 0 0.14 11.6 0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:38223-38638 Augustus predicted protein sequence Tobacco scaffold476_contigs=10~38223-38638 Retrotrans_gag PF03732.12 g21222.t1 - 0.014 15.4 2.4 0.034 14.1 1.2 1.8 1 1 1 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:12338-12948 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~12338-12948 CBM_25 PF03423.8 g129664.t1 - 0.0076 16.3 0.1 0.0094 16 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate binding domain (family 25) | Ref_seq=scaffold3012_contigs=1, transcript_loc=scaffold3012_contigs=1:2817-3113 Augustus predicted protein sequence Tobacco scaffold3012_contigs=1~2817-3113 CENP-B_dimeris PF09026.5 g123470.t1 - 0.028 14.6 1.3 0.061 13.5 0.9 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:34866-39601 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~34866-39601 Rib_recp_KP_reg PF05104.7 g10567.t1 - 0.89 10 2.9 1.3 9.5 1.9 1.3 1 1 0 1 1 1 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:302021-302341 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~302021-302341 HALZ PF02183.13 g29112.t1 - 0.000045 23 6.5 0.0018 17.9 0 2.8 3 0 0 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:141276-142022 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~141276-142022 GAS PF13851.1 g74795.t1 - 0.0037 16.4 0.3 0.0045 16.2 0.2 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:93205-93552 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~93205-93552 HH_signal PF01085.13 g85930.t1 - 0.072 12.6 0.1 0.081 12.4 0.1 1.1 1 0 0 1 1 1 0 Hedgehog amino-terminal signalling domain | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:161558-161926 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~161558-161926 TrbE PF11100.3 g67220.t1 - 0.042 13.6 0.1 0.052 13.4 0.1 1.3 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:808865-810066 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~808865-810066 Phage_X PF05155.10 g59114.t1 - 0.061 13.2 0 0.38 10.7 0 1.9 2 0 0 2 2 2 0 Phage X family | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:9262-9669 Augustus predicted protein sequence Tobacco scaffold1281_contigs=3~9262-9669 DUF2462 PF09495.5 g97785.t1 - 0.0089 16.7 0.1 5.4 7.8 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2462) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:159190-159808 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~159190-159808 IP_trans PF02121.13 g69146.t1 - 0.065 12.4 0.7 0.077 12.1 0.5 1.1 1 0 0 1 1 1 0 Phosphatidylinositol transfer protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:551038-551382 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~551038-551382 UPF0240 PF06784.6 g107651.t1 - 0.06 13 0.8 0.096 12.3 0.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:149454-150683 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~149454-150683 DUF3300 PF11737.3 g30524.t1 - 0.068 12.4 0 0.078 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3300) | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1106489-1106716 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1106489-1106716 TGT_C1 PF14809.1 g129791.t1 - 0.14 11.9 0.1 0.34 10.7 0.1 1.6 1 0 0 1 1 1 0 C1 domain of tRNA-guanine transglycosylase dimerisation | Ref_seq=scaffold3064_contigs=1, transcript_loc=scaffold3064_contigs=1:3101-3563 Augustus predicted protein sequence Tobacco scaffold3064_contigs=1~3101-3563 COX16 PF14138.1 g111398.t1 - 1.4 9.1 3.3 38 4.5 0.6 2.5 2 1 1 3 3 3 0 Cytochrome c oxidase assembly protein COX16 | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:349516-353795 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~349516-353795 NAM-associated PF14303.1 g13137.t1 - 0.00011 22.5 3.4 0.00012 22.3 2.3 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:250250-250510 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~250250-250510 DUF3222 PF11519.3 g45029.t1 - 0.35 10.8 2.7 7.9 6.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3222) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:253712-254014 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~253712-254014 DBD_Tnp_Mut PF03108.10 g83671.t1 - 6.6E-009 35.2 0.1 0.000000011 34.5 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:133595-134131 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~133595-134131 TPR_MLP1_2 PF07926.7 g106725.t1 - 0.064 12.9 1 0.084 12.6 0.7 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:444608-444985 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~444608-444985 CbiN PF02553.10 g48323.t1 - 0.013 15.5 0 0.024 14.6 0 1.5 1 0 0 1 1 1 0 Cobalt transport protein component CbiN | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:378227-378978 Augustus predicted protein sequence Tobacco scaffold1107_contigs=16~378227-378978 HrpA_pilin PF09589.5 g93586.t1 - 0.07 13.5 1 0.087 13.2 0.7 1.3 1 0 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:187237-187674 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~187237-187674 CAF-1_p150 PF11600.3 g12543.t1 - 0.000058 22.5 26.2 0.000071 22.2 18.1 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:147934-148554 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~147934-148554 CSF-1 PF05337.6 g98310.t1 - 0.014 14.8 0.1 0.018 14.4 0.1 1.2 1 0 0 1 1 1 0 Macrophage colony stimulating factor-1 (CSF-1) | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:31252-31902 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~31252-31902 HALZ PF02183.13 g12724.t1 - 0.0079 15.8 4.8 0.011 15.4 0.8 2.7 2 1 0 3 3 3 1 Homeobox associated leucine zipper | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:348932-349360 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~348932-349360 VQ PF05678.9 g105777.t1 - 0.0000092 24.5 1.4 0.000018 23.6 0 2.3 2 0 0 2 2 2 1 VQ motif | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:256596-257366 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~256596-257366 Rap_GAP PF02145.10 g58183.t1 - 0.032 13.6 0 0.037 13.4 0 1 1 0 0 1 1 1 0 Rap/ran-GAP | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:183827-184033 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~183827-184033 SH3BGR PF04908.10 g30077.t1 - 0.54 10.2 3 3.6 7.5 0.4 2.2 1 1 1 2 2 2 0 SH3-binding, glutamic acid-rich protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:373480-373896 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~373480-373896 Phage_int_SAM_3 PF14659.1 g109835.t1 - 0.023 14.9 0 0.059 13.6 0 1.6 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:292780-293007 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~292780-293007 Gag_spuma PF03276.9 g120325.t1 - 1.7 6.8 11.5 1.7 6.8 8 1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:218928-220153 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~218928-220153 Xpo1 PF08389.7 g18584.t1 - 0.0021 17.9 0.5 0.0047 16.8 0.1 1.7 2 0 0 2 2 2 1 Exportin 1-like protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:271532-272166 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~271532-272166 TP2 PF01254.13 g28586.t1 - 0.057 13.7 4.2 0.074 13.3 2.9 1.1 1 0 0 1 1 1 0 Nuclear transition protein 2 | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:268318-268608 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~268318-268608 BTV_NS2 PF04514.7 g91446.t1 - 0.049 12.5 0.2 0.049 12.5 0.1 1.4 2 0 0 2 2 2 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:10750-12406 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~10750-12406 DUF1510 PF07423.6 g5380.t1 - 5.5 6.3 14.2 6.5 6 9.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:144102-144446 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~144102-144446 DUF4468 PF14730.1 g64362.t1 - 0.0054 16.4 0 4 7.1 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4468) with TBP-like fold | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:100295-101398 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~100295-101398 DUF4608 PF15381.1 g113280.t1 - 1.8 8.7 8.3 8.1 6.6 1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:278765-280136 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~278765-280136 ATHILA PF03078.10 g20378.t1 - 0.00000024 29.7 1 0.00000027 29.5 0.7 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:173299-173778 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~173299-173778 DIT1_PvcA PF05141.7 g49787.t1 - 0.062 12.5 0.3 0.072 12.3 0.2 1.1 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:139747-140220 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~139747-140220 zf-MIZ PF02891.15 g88235.t1 - 0.089 12.3 0.1 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:6663-7564 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~6663-7564 QLQ PF08880.6 g86067.t1 - 0.31 10.4 0.2 0.31 10.4 0.1 2.6 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:116513-116725 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~116513-116725 IFP_35_N PF07334.8 g68905.t1 - 0.019 14.9 0.4 0.04 13.8 0.3 1.5 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:88616-88933 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~88616-88933 CotJA PF11007.3 g55875.t1 - 0.025 14.1 0 12 5.6 0 2.8 3 0 0 3 3 3 0 Spore coat associated protein JA (CotJA) | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:14763-16441 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~14763-16441 FXR1P_C PF12235.3 g78734.t1 - 0.018 15.1 4.6 0.023 14.8 3.2 1.2 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:57705-58593 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~57705-58593 HCR PF07111.7 g87354.t1 - 0.15 10 0.1 0.2 9.6 0.1 1.1 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:429765-430442 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~429765-430442 TnpW PF14202.1 g112353.t1 - 0.032 13.8 0.2 3.8 7.1 0.1 2.2 2 0 0 2 2 2 0 Transposon-encoded protein TnpW | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:164774-165620 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~164774-165620 DUF3406 PF11886.3 g81722.t1 - 0.026 13.3 0 0.028 13.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3406) | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:43012-45440 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~43012-45440 DUF4607 PF15380.1 g109501.t1 - 0.038 13.4 0.3 2.1 7.6 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4607) | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:117572-118788 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~117572-118788 RVT_3 PF13456.1 g116432.t1 - 0.02 14.6 0 0.025 14.3 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:7716-8139 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~7716-8139 PAF-AH_p_II PF03403.8 g34847.t1 - 0.14 10.4 0 0.29 9.3 0 1.5 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:53539-55578 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~53539-55578 DUF1269 PF06897.7 g37168.t1 - 0.033 14.2 0.3 0.04 13.9 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) | Ref_seq=scaffold911_contigs=13, transcript_loc=scaffold911_contigs=13:3075-3311 Augustus predicted protein sequence Tobacco scaffold911_contigs=13~3075-3311 Amidase_5 PF05382.8 g77492.t1 - 0.027 14 0 0.032 13.8 0 1.2 1 0 0 1 1 1 0 Bacteriophage peptidoglycan hydrolase | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:202429-202782 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~202429-202782 RVT_3 PF13456.1 g125337.t1 - 0.000064 22.6 0 0.000083 22.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:51379-51660 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~51379-51660 Rod_cone_degen PF15201.1 g29025.t1 - 0.085 12.7 2.3 0.15 11.9 0.2 2.2 1 1 2 3 3 3 0 Progressive rod-cone degeneration | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:66223-66714 Augustus predicted protein sequence Tobacco scaffold754_contigs=7~66223-66714 TPR_MLP1_2 PF07926.7 g67796.t1 - 0.33 10.7 11.3 0.65 9.7 1 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:347074-347787 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~347074-347787 SR-25 PF10500.4 g28342.t1 - 0.011 15.2 4.6 0.012 15.1 3.2 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:115521-117939 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~115521-117939 PEP-utilisers_N PF05524.8 g45976.t1 - 0.034 13.9 0 0.068 12.9 0 1.5 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:196166-197316 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~196166-197316 GCD14_N PF14801.1 g29102.t1 - 0.082 12.4 0.1 0.15 11.6 0.1 1.5 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:111282-112647 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~111282-112647 Macoilin PF09726.4 g766.t1 - 2.8 6.1 5.6 4.2 5.5 3.9 1.2 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:102067-102961 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~102067-102961 LEAP-2 PF07359.6 g21669.t1 - 0.2 11.3 1.4 0.26 10.9 1 1.3 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:433-723 Augustus predicted protein sequence Tobacco scaffold598_contigs=2~433-723 zf-CCHC PF00098.18 g28300.t1 - 0.0012 18.6 0.3 0.0017 18.1 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:12767-13150 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~12767-13150 Cwf_Cwc_15 PF04889.7 g57370.t1 - 0.042 13.5 0.1 0.049 13.3 0.1 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:42750-44051 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~42750-44051 DUF4283 PF14111.1 g54998.t1 - 0.0000012 27.6 0 0.0000019 27 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:327332-327759 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~327332-327759 Tautomerase PF01361.16 g81544.t1 - 0.039 13.5 0.3 0.46 10.1 0 2.4 2 0 0 2 2 2 0 Tautomerase enzyme | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:207768-210395 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~207768-210395 PIG-X PF08320.7 g118544.t1 - 0.16 11.2 0 0.21 10.8 0 1.2 1 0 0 1 1 1 0 PIG-X / PBN1 | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:157316-157995 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~157316-157995 DUF681 PF05080.7 g26406.t1 - 0.017 15.5 0.4 0.024 15 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF681) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:287939-288659 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~287939-288659 DUF1028 PF06267.7 g3575.t1 - 0.022 14.1 0 0.026 13.9 0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF1028) | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:45692-46419 Augustus predicted protein sequence Tobacco scaffold236_contigs=3~45692-46419 Seryl_tRNA_N PF02403.17 g81385.t1 - 0.015 15.3 1.2 0.024 14.6 0.8 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:138122-139006 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~138122-139006 Cep57_MT_bd PF06657.8 g66925.t1 - 0.026 14.4 1.9 0.067 13.1 1.3 1.7 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:139365-139861 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~139365-139861 HSP20 PF00011.16 g81344.t1 - 0.02 14.7 0.1 0.032 14 0 1.3 1 0 0 1 1 1 0 Hsp20/alpha crystallin family | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:60992-63541 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~60992-63541 Calcipressin PF04847.7 g117481.t1 - 0.07 12.7 0.3 0.49 9.9 0.2 2 2 0 0 2 2 2 0 Calcipressin | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:56183-56446 Augustus predicted protein sequence Tobacco scaffold2686_contigs=11~56183-56446 Keratin_assoc PF09775.4 g106971.t1 - 0.4 10.2 2.4 0.37 10.3 0.1 1.9 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:154711-155124 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~154711-155124 Spore_YtfJ PF09579.5 g51008.t1 - 6.6 6.6 6.4 0.94 9.3 0.3 2 1 1 0 2 2 2 0 Sporulation protein YtfJ (Spore_YtfJ) | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:86058-86454 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~86058-86454 DUF1149 PF06619.6 g18535.t1 - 0.029 14.3 0.4 0.24 11.3 0.1 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1149) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:178225-178551 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~178225-178551 DDE_Tnp_1_7 PF13843.1 g47224.t1 - 0.069 12.1 0.1 0.08 11.9 0.1 1 1 0 0 1 1 1 0 Transposase IS4 | Ref_seq=scaffold1090_contigs=11, transcript_loc=scaffold1090_contigs=11:14581-14958 Augustus predicted protein sequence Tobacco scaffold1090_contigs=11~14581-14958 DUF2880 PF11082.3 g129599.t1 - 0.013 15.4 0.1 5.1 7 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2880) | Ref_seq=scaffold2996_contigs=1, transcript_loc=scaffold2996_contigs=1:1973-3019 Augustus predicted protein sequence Tobacco scaffold2996_contigs=1~1973-3019 RVT_3 PF13456.1 g60992.t1 - 0.044 13.5 0 0.12 12.2 0 1.7 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1326_contigs=8, transcript_loc=scaffold1326_contigs=8:8139-8638 Augustus predicted protein sequence Tobacco scaffold1326_contigs=8~8139-8638 LEA_6 PF10714.4 g96718.t1 - 0.51 10.1 2.9 0.61 9.9 2 1.1 1 0 0 1 1 1 0 Late embryogenesis abundant protein 18 | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:224769-225624 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~224769-225624 zf-CCHC PF00098.18 g42308.t1 - 0.0001 22 0.5 0.0001 22 0.4 1.8 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:9897-10262 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~9897-10262 DUF1985 PF09331.6 g99433.t1 - 1.1E-009 38.2 0 1.5E-009 37.8 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:526899-527803 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~526899-527803 H_lectin PF09458.5 g95999.t1 - 0.018 14.6 0.1 0.03 13.9 0.1 1.3 1 0 0 1 1 1 0 H-type lectin domain | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:104521-105557 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~104521-105557 KH_5 PF13184.1 g70249.t1 - 0.1 12.3 1.4 0.54 10 0.3 2 1 1 1 2 2 2 0 NusA-like KH domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:135268-135549 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~135268-135549 Ral PF11058.3 g16311.t1 - 0.12 11.7 0.2 0.18 11.2 0.2 1.3 1 0 0 1 1 1 0 Antirestriction protein Ral | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:34974-35491 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~34974-35491 YaaC PF14175.1 g511.t1 - 0.033 13.1 0.3 0.039 12.9 0.2 1.1 1 0 0 1 1 1 0 YaaC-like Protein | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:50135-50920 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~50135-50920 DUF4635 PF15466.1 g31645.t1 - 0.051 12.8 0.4 0.095 11.9 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:12195-13098 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~12195-13098 DUF4170 PF13773.1 g21312.t1 - 0.01 15.7 0 0.017 14.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:79627-80001 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~79627-80001 Meth_synt_2 PF01717.13 g56183.t1 - 0.012 14.6 0.1 0.014 14.3 0 1 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:198990-199220 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~198990-199220 XhlA PF10779.4 g86832.t1 - 0.0038 17 1.4 0.0056 16.5 0.9 1.2 1 0 0 1 1 1 1 Haemolysin XhlA | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:24048-24923 Augustus predicted protein sequence Tobacco scaffold1863_contigs=15~24048-24923 NIP_1 PF08995.5 g124593.t1 - 0.038 14.1 0.3 0.045 13.9 0.2 1.1 1 0 0 1 1 1 0 Necrosis inducing protein-1 | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:95895-96119 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~95895-96119 DUF4341 PF14241.1 g118558.t1 - 0.72 9.5 3.9 4.6 7 0.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4341) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:180580-180816 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~180580-180816 APC_basic PF05956.6 g110708.t1 - 0.045 12.8 0.3 0.051 12.7 0.2 1.1 1 0 0 1 1 1 0 APC basic domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:290401-291726 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~290401-291726 Bclx_interact PF08945.5 g94992.t1 - 0.12 11.9 0.4 0.19 11.3 0.3 1.3 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:56442-56828 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~56442-56828 ATHILA PF03078.10 g32268.t1 - 1.2E-010 40.6 0.2 0.009 14.6 0 3.1 1 1 2 3 3 3 3 ATHILA ORF-1 family | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:51889-52581 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~51889-52581 DAZAP2 PF11029.3 g31925.t1 - 0.066 13.6 0 0.088 13.2 0 1.1 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:220350-222193 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~220350-222193 MHCassoc_trimer PF08831.5 g92817.t1 - 0.14 11.9 1.7 0.24 11.2 1.2 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:302695-303063 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~302695-303063 zf-CCHC PF00098.18 g96132.t1 - 0.098 12.6 0.1 0.2 11.6 0 1.6 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2096_contigs=7, transcript_loc=scaffold2096_contigs=7:89430-90147 Augustus predicted protein sequence Tobacco scaffold2096_contigs=7~89430-90147 Phage_endo_I PF05367.6 g126182.t1 - 0.086 12.2 0 0.12 11.7 0 1.3 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:23843-24238 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~23843-24238 Remorin_C PF03763.8 g89261.t1 - 0.019 14.4 5.2 0.029 13.8 3.6 1.2 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:169245-169673 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~169245-169673 HOOK PF05622.7 g115140.t1 - 0.0075 14.1 0.4 0.01 13.6 0.3 1.2 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:81520-81795 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~81520-81795 NTR2 PF15458.1 g101826.t1 - 0.022 14 0.2 0.035 13.3 0.1 1.4 1 1 0 1 1 1 0 Nineteen complex-related protein 2 | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:37355-38262 Augustus predicted protein sequence Tobacco scaffold2223_contigs=8~37355-38262 ACR_tran PF00873.14 g86639.t1 - 0.054 10.9 0.1 0.063 10.6 0.1 1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:87687-88181 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~87687-88181 PRCC PF10253.4 g113315.t1 - 0.06 14 1.2 0.12 13 0.9 1.6 1 1 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:77976-78314 Augustus predicted protein sequence Tobacco scaffold2625_contigs=4~77976-78314 Ribosomal_60s PF00428.14 g94499.t1 - 0.092 13.1 4.4 0.13 12.7 3 1.3 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:17720-18115 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~17720-18115 YtxC PF08812.6 g93777.t1 - 0.077 12.4 0.4 0.4 10.1 0 1.9 2 0 0 2 2 2 0 YtxC-like family | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:19081-20597 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~19081-20597 DRY_EERY PF09750.4 g88692.t1 - 0.031 14.3 5.6 0.035 14.2 3.9 1.1 1 0 0 1 1 1 0 Alternative splicing regulator | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:171211-171483 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~171211-171483 SIR2_2 PF13289.1 g36129.t1 - 0.08 12.8 0 0.12 12.2 0 1.3 1 1 0 1 1 1 0 SIR2-like domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:325165-325916 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~325165-325916 EBV-NA3 PF05009.7 g85854.t1 - 0.11 11.7 1.2 0.12 11.6 0.8 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1838_contigs=6, transcript_loc=scaffold1838_contigs=6:169901-170128 Augustus predicted protein sequence Tobacco scaffold1838_contigs=6~169901-170128 zf-UBP PF02148.14 g32247.t1 - 0.33 11.1 2.8 0.32 11.1 1.9 1.3 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:4849-5143 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~4849-5143 FAD_binding_2 PF00890.19 g111126.t1 - 0.094 11.5 0 0.1 11.4 0 1.1 1 0 0 1 1 1 0 FAD binding domain | Ref_seq=scaffold2580_contigs=9, transcript_loc=scaffold2580_contigs=9:30967-31682 Augustus predicted protein sequence Tobacco scaffold2580_contigs=9~30967-31682 UBN2_3 PF14244.1 g51414.t1 - 0.00005 22.9 0.1 0.00005 22.9 0.1 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1154_contigs=1, transcript_loc=scaffold1154_contigs=1:9345-9934 Augustus predicted protein sequence Tobacco scaffold1154_contigs=1~9345-9934 zf-CCHC PF00098.18 g42079.t1 - 0.0091 15.8 0.3 0.015 15.2 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1002_contigs=4, transcript_loc=scaffold1002_contigs=4:52624-52986 Augustus predicted protein sequence Tobacco scaffold1002_contigs=4~52624-52986 DoxA PF07680.6 g45663.t1 - 0.042 13.4 0 0.044 13.3 0 1.1 1 0 0 1 1 1 0 TQO small subunit DoxA | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:317680-317994 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~317680-317994 ATHILA PF03078.10 g478.t1 - 0.00014 20.5 0.1 0.27 9.7 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:17882-18487 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~17882-18487 HTH_13 PF11972.3 g15225.t1 - 0.097 12.5 0 0.25 11.2 0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain | Ref_seq=scaffold494_contigs=9, transcript_loc=scaffold494_contigs=9:244065-244885 Augustus predicted protein sequence Tobacco scaffold494_contigs=9~244065-244885 DUF4596 PF15363.1 g119918.t1 - 0.32 10.9 3.8 0.58 10.1 2.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:514641-514970 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~514641-514970 DUF1299 PF06975.6 g126297.t1 - 0.0093 15.8 1.9 0.029 14.2 1.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1299) | Ref_seq=scaffold2791_contigs=1, transcript_loc=scaffold2791_contigs=1:45622-46224 Augustus predicted protein sequence Tobacco scaffold2791_contigs=1~45622-46224 CEP170_C PF15308.1 g66542.t1 - 0.11 10.7 1.4 0.12 10.6 1 1 1 0 0 1 1 1 0 CEP170 C-terminus | Ref_seq=scaffold1441_contigs=1, transcript_loc=scaffold1441_contigs=1:55515-55769 Augustus predicted protein sequence Tobacco scaffold1441_contigs=1~55515-55769 DUF2381 PF09544.5 g21505.t1 - 0.067 12.2 0 0.083 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:15528-16355 Augustus predicted protein sequence Tobacco scaffold595_contigs=2~15528-16355 Paired_CXXCH_1 PF09699.5 g86756.t1 - 0.03 13.8 0.2 0.08 12.4 0.1 1.7 1 0 0 1 1 1 0 Doubled CXXCH motif (Paired_CXXCH_1) | Ref_seq=scaffold1861_contigs=7, transcript_loc=scaffold1861_contigs=7:69776-72024 Augustus predicted protein sequence Tobacco scaffold1861_contigs=7~69776-72024 EB PF01683.13 g49971.t1 - 0.063 13.3 2.6 0.12 12.4 1.8 1.4 1 0 0 1 1 1 0 EB module | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:467127-467483 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~467127-467483 ATHILA PF03078.10 g20705.t1 - 0.0011 17.5 0 0.01 14.4 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:98646-99101 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~98646-99101 DUF4658 PF15555.1 g1659.t1 - 0.052 13.4 0.2 0.08 12.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4658) | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:66592-69177 Augustus predicted protein sequence Tobacco scaffold191_contigs=2~66592-69177 DUF3693 PF12472.3 g10214.t1 - 0.032 13.8 0 0.045 13.3 0 1.2 1 0 0 1 1 1 0 Phage related protein | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:438156-438488 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~438156-438488 Biotin_lipoyl_2 PF13533.1 g114705.t1 - 0.034 13.7 0 3.1 7.5 0 2.3 2 0 0 2 2 2 0 Biotin-lipoyl like | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:235398-235925 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~235398-235925 Spidroin_MaSp PF11260.3 g18689.t1 - 0.089 12.8 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Major ampullate spidroin 1 and 2 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:456690-457528 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~456690-457528 RVT_3 PF13456.1 g120112.t1 - 0.00011 21.9 0.3 0.00016 21.3 0.2 1.3 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:62441-62760 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~62441-62760 Yeast-kill-tox PF09207.6 g23078.t1 - 0.1 13 0.5 0.2 12 0.3 1.5 1 0 0 1 1 1 0 Yeast killer toxin | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:46883-47323 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~46883-47323 Desmo_N PF06771.6 g98400.t1 - 0.019 14.8 0 0.027 14.4 0 1.2 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:68966-70733 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~68966-70733 Ketoacyl-synt_C PF02801.17 g85059.t1 - 0.1 12.4 0 0.12 12.1 0 1.1 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:119648-120439 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~119648-120439 DUF1347 PF07079.6 g102854.t1 - 0.035 12.3 0.1 0.04 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:44818-45216 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~44818-45216 DUF2851 PF11013.3 g6274.t1 - 0.0031 16.2 0.1 0.0049 15.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2851) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:384375-385237 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~384375-385237 Toxin_29 PF08116.6 g119000.t1 - 0.3 10.8 2.7 1.4 8.7 0.2 2.1 2 0 0 2 2 2 0 PhTx neurotoxin family | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:747809-748048 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~747809-748048 DUF4355 PF14265.1 g80586.t1 - 0.016 15.1 5.9 0.017 15 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:92627-92921 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~92627-92921 DUF1985 PF09331.6 g67235.t1 - 0.00000066 29.2 0 0.0000011 28.5 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:854984-856415 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~854984-856415 Stathmin PF00836.14 g36043.t1 - 0.82 9.3 9 0.23 11.1 4 1.8 1 1 0 1 1 1 0 Stathmin family | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:166770-167604 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~166770-167604 DUF633 PF04816.7 g30744.t1 - 0.076 12.3 0 0.095 12 0 1 1 0 0 1 1 1 0 Family of unknown function (DUF633) | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:25390-25905 Augustus predicted protein sequence Tobacco scaffold779_contigs=3~25390-25905 Hyccin PF09790.4 g51224.t1 - 0.06 12.1 7.5 2.5 6.8 0.6 2.9 1 1 2 3 3 3 0 Hyccin | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:136552-136863 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~136552-136863 TBPIP PF07106.8 g29568.t1 - 0.07 12.6 5.4 0.079 12.5 3.7 1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) | Ref_seq=scaffold761_contigs=1, transcript_loc=scaffold761_contigs=1:23016-23444 Augustus predicted protein sequence Tobacco scaffold761_contigs=1~23016-23444 Albumin_I PF08027.6 g129604.t1 - 0.0078 15.9 0.2 0.033 13.9 0 1.9 2 0 0 2 2 2 1 Albumin I | Ref_seq=scaffold2998_contigs=1, transcript_loc=scaffold2998_contigs=1:2227-2820 Augustus predicted protein sequence Tobacco scaffold2998_contigs=1~2227-2820 Tryp_alpha_amyl PF00234.17 g128805.t1 - 0.000000089 32.2 9.5 0.00000013 31.6 6.4 1.4 1 1 0 1 1 1 1 Protease inhibitor/seed storage/LTP family | Ref_seq=scaffold2890_contigs=1, transcript_loc=scaffold2890_contigs=1:33702-34055 Augustus predicted protein sequence Tobacco scaffold2890_contigs=1~33702-34055 MIP-T3 PF10243.4 g80689.t1 - 0.05 12 2 0.06 11.8 1.4 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:95214-96463 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~95214-96463 NAD_binding_6 PF08030.7 g10570.t1 - 0.17 11.7 0.3 0.53 10.1 0.3 1.7 1 1 1 2 2 2 0 Ferric reductase NAD binding domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:304055-304663 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~304055-304663 LrgB PF04172.11 g54230.t1 - 0.11 11.6 0.2 0.19 10.8 0 1.4 2 0 0 2 2 2 0 LrgB-like family | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:47856-48769 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~47856-48769 eIF3g PF12353.3 g8318.t1 - 0.011 15.5 0.3 0.025 14.5 0.2 1.6 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:167942-168265 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~167942-168265 Trypan_PARP PF05887.6 g44433.t1 - 3.4 7.4 10.2 4 7.2 7.1 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:58306-58614 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~58306-58614 BLOC1_2 PF10046.4 g43619.t1 - 0.04 14 0.3 0.095 12.8 0.1 1.4 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:165985-166266 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~165985-166266 DUF899 PF05988.7 g69955.t1 - 0.0038 16.7 0 0.0044 16.4 0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:653489-654385 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~653489-654385 DUF845 PF05820.6 g125359.t1 - 0.091 12.5 0.7 6.8 6.4 0 3.1 1 1 1 2 2 2 0 Baculovirus protein of unknown function (DUF845) | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:92390-92926 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~92390-92926 Transposase_28 PF04195.7 g41512.t1 - 0.00097 18.4 0.1 0.0017 17.6 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:154764-157103 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~154764-157103 PLDc PF00614.17 g113518.t1 - 0.051 13.4 0.1 0.073 12.9 0 1.2 1 0 0 1 1 1 0 Phospholipase D Active site motif | Ref_seq=scaffold2634_contigs=4, transcript_loc=scaffold2634_contigs=4:8533-8751 Augustus predicted protein sequence Tobacco scaffold2634_contigs=4~8533-8751 LRR_1 PF00560.28 g87493.t1 - 0.098 12.7 0.2 47 4.5 0 3.2 3 0 0 3 3 3 0 Leucine Rich Repeat | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:237500-239092 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~237500-239092 DUF1647 PF07801.6 g65846.t1 - 0.15 11.5 1.1 0.93 8.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1647) | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:247223-249278 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~247223-249278 DctM PF06808.7 g23575.t1 - 0.17 10.4 0.7 0.17 10.3 0.5 1 1 0 0 1 1 1 0 DctM-like transporters | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:108480-108719 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~108480-108719 RVT_2 PF07727.9 g112100.t1 - 0.002 17.1 0.1 0.0024 16.8 0.1 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:160643-161669 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~160643-161669 DUF2162 PF09930.4 g70218.t1 - 1.2 8.2 3.2 1.5 7.9 2.2 1.1 1 0 0 1 1 1 0 Predicted transporter (DUF2162) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:86392-86661 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~86392-86661 Piwi PF02171.12 g6507.t1 - 0.098 11.6 0 0.1 11.5 0 1.1 1 0 0 1 1 1 0 Piwi domain | Ref_seq=scaffold298_contigs=3, transcript_loc=scaffold298_contigs=3:44544-44795 Augustus predicted protein sequence Tobacco scaffold298_contigs=3~44544-44795 Myosin_tail_1 PF01576.14 g55379.t1 - 0.096 10.3 1.5 0.12 10.1 1.1 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:245675-247301 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~245675-247301 DUF3322 PF11795.3 g82745.t1 - 0.06 12.9 0.6 0.067 12.8 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:15670-16023 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~15670-16023 Phage_B PF02304.10 g42779.t1 - 1.7 8.9 4.7 22 5.3 0 2.9 2 1 1 3 3 3 0 Scaffold protein B | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:556352-556876 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~556352-556876 Toxin_49 PF15529.1 g118507.t1 - 0.043 13.7 0.6 0.097 12.6 0.4 1.6 1 1 0 1 1 1 0 Putative toxin 49 | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:69368-69691 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~69368-69691 ATHILA PF03078.10 g81086.t1 - 0.0046 15.5 0 0.0055 15.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:203756-204283 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~203756-204283 DUF4318 PF14201.1 g97551.t1 - 0.13 12 0 0.19 11.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4318) | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:144305-144541 Augustus predicted protein sequence Tobacco scaffold2138_contigs=7~144305-144541 bZIP_1 PF00170.16 g113189.t1 - 0.42 10.5 6.4 1.2 9.1 1.9 2.6 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2623_contigs=9, transcript_loc=scaffold2623_contigs=9:94306-95094 Augustus predicted protein sequence Tobacco scaffold2623_contigs=9~94306-95094 DUF2743 PF10899.3 g30614.t1 - 0.054 12.8 0.2 0.055 12.8 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:26096-26455 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~26096-26455 APG6 PF04111.7 g40862.t1 - 0.033 13.2 1.1 0.051 12.6 0.8 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:22651-24258 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~22651-24258 TPD52 PF04201.10 g30576.t1 - 0.11 12.2 4.8 0.13 11.9 0.8 2.3 2 1 0 2 2 2 0 Tumour protein D52 family | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1195817-1196359 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1195817-1196359 zf-CCHC PF00098.18 g27979.t1 - 0.000077 22.4 5.2 0.00012 21.8 3.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:692602-692892 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~692602-692892 TOBE PF03459.12 g50652.t1 - 0.12 12.5 0.1 0.32 11.1 0.1 1.8 1 1 0 1 1 1 0 TOBE domain | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:157755-157979 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~157755-157979 Remorin_C PF03763.8 g31080.t1 - 0.14 11.6 0.1 0.19 11.2 0.1 1.1 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold785_contigs=8, transcript_loc=scaffold785_contigs=8:62599-62907 Augustus predicted protein sequence Tobacco scaffold785_contigs=8~62599-62907 End_N_terminal PF12218.3 g65986.t1 - 0.063 12.7 0 0.14 11.6 0 1.5 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:79712-80907 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~79712-80907 DUF3725 PF12523.3 g24693.t1 - 0.15 12.1 0.2 23 5.1 0.1 3 2 1 0 2 2 2 0 Protein of unknown function (DUF3725) | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:31828-32431 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~31828-32431 DUF3087 PF11286.3 g21589.t1 - 0.01 15 0.1 0.013 14.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:85105-85542 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~85105-85542 Dimer_Tnp_hAT PF05699.9 g67125.t1 - 0.14 11.7 0.1 0.23 11 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:565000-565418 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~565000-565418 RXT2_N PF08595.6 g70765.t1 - 0.056 13.2 2.8 0.095 12.4 1.9 1.4 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:121211-124290 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~121211-124290 Endotoxin_N PF03945.9 g71333.t1 - 0.083 12.2 0 0.092 12.1 0 1.1 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:542079-542465 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~542079-542465 Prp31_C PF09785.4 g51174.t1 - 0.037 14.4 0.3 0.049 14 0.2 1.1 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:107600-108094 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~107600-108094 Rib_hydrolayse PF02267.12 g10520.t1 - 0.0052 16.1 2.5 0.031 13.6 1.7 1.9 1 1 0 1 1 1 1 ADP-ribosyl cyclase | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:181406-181981 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~181406-181981 SH3_6 PF12913.2 g44408.t1 - 0.0087 15.2 1.7 7.4 5.8 0 3.2 1 1 2 3 3 3 3 SH3 domain of the SH3b1 type | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:36-1996 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~36-1996 DUF3886 PF13025.1 g114560.t1 - 0.23 11.4 7.9 0.32 10.9 5.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:29447-29836 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~29447-29836 Peptidase_S39 PF02122.10 g101533.t1 - 0.086 12.1 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 Peptidase S39 | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:240166-242815 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~240166-242815 DUF4213 PF13938.1 g113697.t1 - 0.12 12.5 0 0.15 12.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4213) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:218208-218492 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~218208-218492 CENP-F_leu_zip PF10473.4 g8629.t1 - 0.00078 19.3 3.5 0.00097 19 2.4 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold341_contigs=14, transcript_loc=scaffold341_contigs=14:3686-3976 Augustus predicted protein sequence Tobacco scaffold341_contigs=14~3686-3976 PAT1 PF09770.4 g62229.t1 - 1.5 6.9 15 1.7 6.7 10.4 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:237960-238622 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~237960-238622 BLVR PF06375.6 g24396.t1 - 0.015 15.1 1.2 0.017 14.9 0.8 1.1 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:105963-108258 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~105963-108258 Herpes_DNAp_acc PF04929.7 g97439.t1 - 0.68 8.8 3.2 0.65 8.8 2.2 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:85986-86357 Augustus predicted protein sequence Tobacco scaffold2136_contigs=4~85986-86357 ATHILA PF03078.10 g31795.t1 - 0.0000011 27.5 0.1 0.0000012 27.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:51121-51402 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~51121-51402 Gly-rich_Ago1 PF12764.2 g73277.t1 - 0.9 10.2 3 0.67 10.6 0.8 1.7 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1536_contigs=31, transcript_loc=scaffold1536_contigs=31:22210-22710 Augustus predicted protein sequence Tobacco scaffold1536_contigs=31~22210-22710 DUF2219 PF09982.4 g109923.t1 - 0.021 13.6 0 0.11 11.3 0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold2518_contigs=8, transcript_loc=scaffold2518_contigs=8:3864-5311 Augustus predicted protein sequence Tobacco scaffold2518_contigs=8~3864-5311 Mito_fiss_reg PF05308.6 g30521.t1 - 0.19 11 3.7 0.27 10.5 2.6 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1102550-1104122 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1102550-1104122 Denso_VP4 PF02336.10 g129205.t1 - 0.092 11.7 0.1 0.12 11.3 0 1.1 1 0 0 1 1 1 0 Capsid protein VP4 | Ref_seq=scaffold2925_contigs=1, transcript_loc=scaffold2925_contigs=1:21118-22197 Augustus predicted protein sequence Tobacco scaffold2925_contigs=1~21118-22197 DUF974 PF06159.8 g44601.t1 - 0.083 12.3 0.2 0.096 12.1 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF974) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:494633-494974 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~494633-494974 DUF3136 PF11334.3 g64380.t1 - 0.045 13.1 0.9 0.076 12.4 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:150172-151411 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~150172-151411 UNC119_bdg PF15435.1 g23999.t1 - 2.1 7.6 5.9 4.6 6.5 0.6 2.1 2 0 0 2 2 2 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold657_contigs=4, transcript_loc=scaffold657_contigs=4:26893-27159 Augustus predicted protein sequence Tobacco scaffold657_contigs=4~26893-27159 FecR PF04773.8 g13190.t1 - 0.11 12.7 0 0.11 12.7 0 1.1 1 0 0 1 1 1 0 FecR protein | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:15540-15782 Augustus predicted protein sequence Tobacco scaffold443_contigs=11~15540-15782 UBN2 PF14223.1 g61678.t1 - 0.038 13.7 0.1 0.23 11.2 0 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:28430-31944 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~28430-31944 Viral_DNA_bp PF00747.12 g51.t1 - 0.084 10 0.1 0.098 9.8 0.1 1 1 0 0 1 1 1 0 ssDNA binding protein | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:4355-4687 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~4355-4687 PAGK PF15284.1 g74704.t1 - 0.13 12 0.2 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Phage-encoded virulence factor | Ref_seq=scaffold1563_contigs=5, transcript_loc=scaffold1563_contigs=5:56985-57498 Augustus predicted protein sequence Tobacco scaffold1563_contigs=5~56985-57498 NAM-associated PF14303.1 g113354.t1 - 0.0008 19.7 1.9 0.0008 19.7 1.3 1.8 2 0 0 2 2 2 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2628_contigs=7, transcript_loc=scaffold2628_contigs=7:13652-14743 Augustus predicted protein sequence Tobacco scaffold2628_contigs=7~13652-14743 ATP-synt_E PF05680.7 g45202.t1 - 0.026 14.4 5.2 0.029 14.3 3.6 1.2 1 0 0 1 1 1 0 ATP synthase E chain | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:70643-71477 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~70643-71477 UPF0561 PF10573.4 g58362.t1 - 8.9 6.1 6.7 2.3 8.1 0.4 2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:259630-260046 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~259630-260046 DUF4413 PF14372.1 g128026.t1 - 1.5E-009 37.7 0.1 4.8E-009 36.1 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:49519-50806 Augustus predicted protein sequence Tobacco scaffold2846_contigs=1~49519-50806 PAT1 PF09770.4 g48157.t1 - 6.4 4.8 8.2 6.8 4.7 5.7 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:378513-379085 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~378513-379085 Herpes_alk_exo PF01771.12 g62977.t1 - 0.1 11 0 0.13 10.7 0 1.1 1 0 0 1 1 1 0 Herpesvirus alkaline exonuclease | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:144236-146561 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~144236-146561 ATHILA PF03078.10 g51084.t1 - 0.013 14.1 0 0.013 14 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:71232-71679 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~71232-71679 Orn_DAP_Arg_deC PF00278.17 g9670.t1 - 0.15 11.8 0 0.24 11 0 1.5 1 1 0 1 1 1 0 Pyridoxal-dependent decarboxylase, C-terminal sheet domain | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:37689-39476 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~37689-39476 Vps51 PF08700.6 g109878.t1 - 0.023 14.4 0.8 0.034 13.9 0.5 1.2 1 0 0 1 1 1 0 Vps51/Vps67 | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:402877-403364 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~402877-403364 Sipho_Gp157 PF05565.6 g53421.t1 - 0.0016 18 0.3 0.0019 17.8 0.2 1.1 1 0 0 1 1 1 1 Siphovirus Gp157 | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:283325-283624 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~283325-283624 CAP_N PF01213.14 g45511.t1 - 0.056 12.7 1 0.064 12.5 0.7 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:75086-75520 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~75086-75520 Retrotrans_gag PF03732.12 g107796.t1 - 0.0034 17.4 0.2 0.0067 16.4 0.1 1.5 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:126501-126851 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~126501-126851 CAP_N PF01213.14 g121041.t1 - 0.044 13 0.3 0.081 12.2 0.2 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:273256-273951 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~273256-273951 DARPP-32 PF05395.7 g24327.t1 - 0.096 12.8 4.3 0.11 12.6 3 1.1 1 0 0 1 1 1 0 Protein phosphatase inhibitor 1/DARPP-32 | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:79207-79891 Augustus predicted protein sequence Tobacco scaffold670_contigs=7~79207-79891 A_amylase_inhib PF01356.14 g53415.t1 - 0.67 9.7 4.3 1.3 8.8 1.4 2.1 2 0 0 2 2 2 0 Alpha amylase inhibitor | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:272878-273709 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~272878-273709 GRP PF07172.6 g29701.t1 - 3.9 8 41.6 3400 -1.5 28.8 2.4 1 1 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:154608-155039 Augustus predicted protein sequence Tobacco scaffold765_contigs=9~154608-155039 Transferase PF02458.10 g17803.t1 - 0.096 11.1 0 0.11 10.8 0 1.1 1 0 0 1 1 1 0 Transferase family | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:243908-244228 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~243908-244228 zf-AN1 PF01428.11 g23391.t1 - 1.1 9.1 3.4 19 5.2 2.3 2.3 1 1 0 1 1 1 0 AN1-like Zinc finger | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:32247-32543 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~32247-32543 ARL6IP6 PF15062.1 g97835.t1 - 7.2 6.5 6.2 5.6 6.9 0.3 2.9 2 1 1 3 3 3 0 Haemopoietic lineage transmembrane helix | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:244600-247548 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~244600-247548 DUF334 PF03904.8 g40924.t1 - 0.053 12.8 0.2 0.056 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF334) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:192298-192537 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~192298-192537 PMD PF10536.4 g8866.t1 - 0.0037 16.3 0.1 0.0047 15.9 0.1 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:433267-434983 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~433267-434983 Rsm1 PF08600.5 g127636.t1 - 0.17 11.7 1.2 0.21 11.4 0.8 1.2 1 0 0 1 1 1 0 Rsm1-like | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:20318-20658 Augustus predicted protein sequence Tobacco scaffold2832_contigs=1~20318-20658 MNNL PF07657.8 g110937.t1 - 0.12 12.3 0.2 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 N terminus of Notch ligand | Ref_seq=scaffold2569_contigs=14, transcript_loc=scaffold2569_contigs=14:198851-199475 Augustus predicted protein sequence Tobacco scaffold2569_contigs=14~198851-199475 Tet_JBP PF12851.2 g94631.t1 - 0.055 12.7 0 0.069 12.4 0 1.3 1 0 0 1 1 1 0 Oxygenase domain of the 2OGFeDO superfamily | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:196646-200869 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~196646-200869 VID27 PF08553.5 g82434.t1 - 0.82 7.8 11.1 0.85 7.7 7.7 1 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:510201-510437 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~510201-510437 DUF1168 PF06658.7 g124190.t1 - 0.0072 15.8 17.7 0.0072 15.8 12.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1168) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1512477-1513351 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1512477-1513351 ATHILA PF03078.10 g82144.t1 - 0.1 11.1 0 0.12 10.8 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:821592-822026 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~821592-822026 SlyX PF04102.7 g53695.t1 - 0.014 15.7 4 0.028 14.7 2.8 1.6 1 1 0 1 1 1 0 SlyX | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:119266-119601 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~119266-119601 ZU5 PF00791.15 g70277.t1 - 0.1 12.2 0 0.2 11.3 0 1.6 1 0 0 1 1 1 0 ZU5 domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:203459-205424 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~203459-205424 DUF1199 PF06712.6 g62249.t1 - 0.042 13.6 0.2 0.06 13.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:287477-287737 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~287477-287737 JCAD PF15351.1 g82143.t1 - 0.15 9.6 0.5 0.17 9.4 0.4 1 1 0 0 1 1 1 0 Junctional protein associated with coronary artery disease | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:821171-821413 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~821171-821413 bZIP_1 PF00170.16 g89169.t1 - 7.3 6.6 10.5 2.2 8.2 0.8 2.9 2 1 1 3 3 3 0 bZIP transcription factor | Ref_seq=scaffold1941_contigs=2, transcript_loc=scaffold1941_contigs=2:13868-14794 Augustus predicted protein sequence Tobacco scaffold1941_contigs=2~13868-14794 FlxA PF14282.1 g29822.t1 - 0.13 12.2 1.4 0.19 11.6 1 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:188147-188557 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~188147-188557 Nro1 PF12753.2 g68876.t1 - 0.012 14.5 0.5 0.015 14.2 0.3 1.1 1 0 0 1 1 1 0 Nuclear pore complex subunit Nro1 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:14933-16181 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~14933-16181 Peptidase_S46 PF10459.4 g24783.t1 - 0.34 9.2 14.4 0.46 8.8 10 1.2 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:8538-9236 Augustus predicted protein sequence Tobacco scaffold677_contigs=5~8538-9236 UBN2 PF14223.1 g8317.t1 - 0.017 14.8 0 0.034 13.9 0 1.5 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:167334-167777 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~167334-167777 DUF2119 PF09892.4 g6308.t1 - 0.037 13.2 0 0.08 12.2 0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:466285-467673 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~466285-467673 FrhB_FdhB_N PF04422.8 g55165.t1 - 0.12 12.2 0 0.22 11.4 0 1.3 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:51497-51871 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~51497-51871 Biliv-reduc_cat PF09166.5 g102263.t1 - 0.087 12.8 0 0.17 11.9 0 1.4 1 0 0 1 1 1 0 Biliverdin reductase, catalytic | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:125899-130783 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~125899-130783 PEGSRP PF07623.6 g5528.t1 - 0.1 11.8 0.2 0.24 10.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:215254-215754 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~215254-215754 Intron_maturas2 PF01348.16 g79073.t1 - 0.13 12.2 2.6 0.13 12.2 1.1 1.5 1 1 1 2 2 2 0 Type II intron maturase | Ref_seq=scaffold1685_contigs=26, transcript_loc=scaffold1685_contigs=26:388548-388887 Augustus predicted protein sequence Tobacco scaffold1685_contigs=26~388548-388887 Nop53 PF07767.6 g123650.t1 - 0.23 10.4 14.8 0.24 10.3 10.3 1 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:201968-202234 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~201968-202234 FliD_C PF07195.7 g7625.t1 - 0.024 13.9 0.6 0.027 13.7 0.4 1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:499545-499760 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~499545-499760 AAA_33 PF13671.1 g121854.t1 - 0.064 13.1 0 0.085 12.7 0 1.2 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:570047-570901 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~570047-570901 TSC22 PF01166.13 g115431.t1 - 0.02 14.8 3.6 0.052 13.5 1.1 2.4 3 0 0 3 3 3 0 TSC-22/dip/bun family | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:349567-350600 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~349567-350600 UPF0547 PF10571.4 g72133.t1 - 0.073 12.7 1.8 0.25 11 1.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:340214-341321 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~340214-341321 Atg14 PF10186.4 g109815.t1 - 0.0025 16.8 2.5 0.0025 16.8 1.7 1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:229742-230068 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~229742-230068 ELMO_CED12 PF04727.8 g120839.t1 - 0.019 14.5 0 0.024 14.2 0 1.2 1 0 0 1 1 1 0 ELMO/CED-12 family | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:313394-314267 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~313394-314267 ERM PF00769.14 g36352.t1 - 0.0053 16.3 0.3 0.0065 16 0.2 1.2 1 1 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold884_contigs=5, transcript_loc=scaffold884_contigs=5:100398-102565 Augustus predicted protein sequence Tobacco scaffold884_contigs=5~100398-102565 zf-Tim10_DDP PF02953.10 g64354.t1 - 0.035 13.3 0.3 0.066 12.5 0.2 1.4 1 0 0 1 1 1 0 Tim10/DDP family zinc finger | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:78974-81155 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~78974-81155 DUF2457 PF10446.4 g96357.t1 - 0.23 10.1 10.9 0.25 10 7.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:5180-5579 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~5180-5579 DUF1689 PF07954.6 g116261.t1 - 0.11 12.2 0.2 5 6.9 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1689) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:301498-302051 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~301498-302051 TRH PF05438.7 g30209.t1 - 0.066 12.6 0.2 0.082 12.2 0.1 1.2 1 0 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:37262-37798 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~37262-37798 DegS PF05384.6 g111224.t1 - 0.0026 17 0.3 0.0029 16.8 0.2 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:9204-9501 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~9204-9501 RVT_3 PF13456.1 g103070.t1 - 0.00014 21.5 0 0.00022 20.9 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:112382-112814 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~112382-112814 DUF868 PF05910.7 g16200.t1 - 0.069 12.5 0 0.069 12.5 0 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF868) | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:71671-71901 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~71671-71901 DUF3471 PF11954.3 g45815.t1 - 0.1 12.4 0 0.15 11.9 0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3471) | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:137041-137466 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~137041-137466 Peroxin-13_N PF04088.8 g43803.t1 - 0.0063 16.4 1.6 0.0063 16.4 1.1 2 1 1 1 2 2 2 1 Peroxin 13, N-terminal region | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:31871-32185 Augustus predicted protein sequence Tobacco scaffold1029_contigs=5~31871-32185 DUF2656 PF10847.3 g17130.t1 - 0.0025 17.7 0 0.004 17 0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2656) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:21657-22895 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~21657-22895 DUF2570 PF10828.3 g66038.t1 - 0.053 13.1 0.7 0.084 12.4 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:205845-206228 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~205845-206228 AUX_IAA PF02309.11 g115796.t1 - 0.0048 16.6 0.3 0.0058 16.4 0.2 1.1 1 0 0 1 1 1 1 AUX/IAA family | Ref_seq=scaffold2664_contigs=8, transcript_loc=scaffold2664_contigs=8:52689-53298 Augustus predicted protein sequence Tobacco scaffold2664_contigs=8~52689-53298 zf-FCS PF06467.9 g122374.t1 - 0.1 12.2 0 0.2 11.3 0 1.5 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:17271-17615 Augustus predicted protein sequence Tobacco scaffold2745_contigs=7~17271-17615 QCR10 PF09796.4 g129442.t1 - 0.23 11.1 1.2 2 8.1 0.3 2 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) | Ref_seq=scaffold2955_contigs=1, transcript_loc=scaffold2955_contigs=1:12463-12693 Augustus predicted protein sequence Tobacco scaffold2955_contigs=1~12463-12693 zf-BED PF02892.10 g33973.t1 - 0.0077 15.9 3.1 0.017 14.9 2.2 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold836_contigs=5, transcript_loc=scaffold836_contigs=5:103506-104020 Augustus predicted protein sequence Tobacco scaffold836_contigs=5~103506-104020 IBR PF01485.16 g121904.t1 - 0.041 13.7 0.1 0.053 13.3 0.1 1.2 1 0 0 1 1 1 0 IBR domain | Ref_seq=scaffold2738_contigs=2, transcript_loc=scaffold2738_contigs=2:11043-11366 Augustus predicted protein sequence Tobacco scaffold2738_contigs=2~11043-11366 NQRA PF05896.6 g35759.t1 - 0.1 11.7 0.8 0.12 11.5 0.6 1.1 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:318867-319202 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~318867-319202 BBS1 PF14779.1 g59278.t1 - 0.12 11.3 0 0.19 10.6 0 1.3 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 1 | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:99884-100459 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~99884-100459 Phage_Coat_A PF05357.8 g122288.t1 - 0.00081 18.9 0.6 0.0018 17.8 0.2 1.7 1 1 0 1 1 1 1 Phage Coat Protein A | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:72403-72822 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~72403-72822 NST1 PF13945.1 g81477.t1 - 0.054 13.5 0.1 0.062 13.3 0 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:68009-68341 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~68009-68341 DGC PF08859.6 g20920.t1 - 0.014 15.2 0 0.015 15.1 0 1.1 1 0 0 1 1 1 0 DGC domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:65753-65977 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~65753-65977 G10 PF01125.12 g5175.t1 - 0.012 15.1 0.2 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 G10 protein | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:74532-75631 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~74532-75631 2Fe-2S_Ferredox PF11591.3 g82586.t1 - 0.0091 15.6 2.5 3.3 7.4 0.1 2.7 2 0 0 2 2 2 2 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold1755_contigs=7, transcript_loc=scaffold1755_contigs=7:20050-20684 Augustus predicted protein sequence Tobacco scaffold1755_contigs=7~20050-20684 DUF4395 PF14340.1 g70978.t1 - 0.1 12.6 0 0.12 12.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:214501-215962 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~214501-215962 DUF2730 PF10805.3 g56366.t1 - 0.044 13.5 0.1 0.059 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:12240-13410 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~12240-13410 ATG16 PF08614.6 g39937.t1 - 0.016 15 4.2 0.022 14.6 2.9 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:12030-12756 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~12030-12756 N6_N4_Mtase PF01555.13 g127589.t1 - 0.085 12.3 0.1 0.088 12.2 0.1 1.1 1 0 0 1 1 1 0 DNA methylase | Ref_seq=scaffold2830_contigs=1, transcript_loc=scaffold2830_contigs=1:35062-35421 Augustus predicted protein sequence Tobacco scaffold2830_contigs=1~35062-35421 Peptidase_C48 PF02902.14 g59913.t1 - 0.00044 19.9 0.1 0.00044 19.9 0.1 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:150309-150994 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~150309-150994 FokI_N PF02981.10 g7135.t1 - 0.066 12.8 0.1 2.5 7.6 0 2.6 1 1 2 3 3 3 0 Restriction endonuclease FokI, recognition domain | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:116717-116968 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~116717-116968 FlgN PF05130.7 g117130.t1 - 0.0064 16.7 0 0.0073 16.5 0 1.1 1 0 0 1 1 1 1 FlgN protein | Ref_seq=scaffold2681_contigs=4, transcript_loc=scaffold2681_contigs=4:12734-12970 Augustus predicted protein sequence Tobacco scaffold2681_contigs=4~12734-12970 IRK_N PF08466.5 g58074.t1 - 0.18 11.7 0.4 6.5 6.7 0 2.1 2 0 0 2 2 2 0 Inward rectifier potassium channel N-terminal | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:309134-309914 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~309134-309914 Lectin_legB PF00139.14 g68035.t1 - 0.0093 15.3 0.1 0.015 14.7 0.1 1.2 1 0 0 1 1 1 1 Legume lectin domain | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:215903-217928 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~215903-217928 RVT_3 PF13456.1 g104810.t1 - 0.0012 18.6 0 0.0018 18 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:1404-1718 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~1404-1718 Methyltransf_20 PF12147.3 g20810.t1 - 0.075 11.8 0 0.096 11.5 0 1.2 1 0 0 1 1 1 0 Putative methyltransferase | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:292205-293061 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~292205-293061 ATHILA PF03078.10 g60622.t1 - 0.000077 21.4 0.1 0.00015 20.4 0.1 1.4 1 1 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:84080-84406 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~84080-84406 DUF972 PF06156.8 g42837.t1 - 0.087 13.1 0.4 0.14 12.4 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:661384-662377 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~661384-662377 Fzo_mitofusin PF04799.8 g57550.t1 - 0.017 14.5 3.3 0.027 13.8 2.3 1.4 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:137997-138518 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~137997-138518 Vir_act_alpha_C PF10400.4 g99035.t1 - 0.046 14.1 0.1 0.053 13.8 0.1 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold2168_contigs=4, transcript_loc=scaffold2168_contigs=4:16692-16904 Augustus predicted protein sequence Tobacco scaffold2168_contigs=4~16692-16904 Transposase_28 PF04195.7 g85297.t1 - 0.012 14.8 0.4 0.017 14.4 0.3 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:157519-158891 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~157519-158891 FH2 PF02181.18 g69268.t1 - 0.14 11 0 0.18 10.6 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:105547-107480 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~105547-107480 BAH PF01426.13 g17249.t1 - 0.031 14 0 0.045 13.5 0 1.3 1 1 0 1 1 1 0 BAH domain | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:262331-262965 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~262331-262965 Bap31 PF05529.7 g30104.t1 - 1.2 8.5 3.9 2.1 7.7 2.7 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:424419-425606 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~424419-425606 HALZ PF02183.13 g46556.t1 - 0.04 13.6 8.4 0.33 10.6 1.3 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:108597-109094 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~108597-109094 PDDEXK_4 PF14281.1 g13742.t1 - 0.039 13.7 0.4 0.055 13.3 0.3 1.3 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:11597-12079 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~11597-12079 DUF4527 PF15030.1 g10339.t1 - 0.024 13.9 0 0.036 13.3 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4527) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:129697-130035 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~129697-130035 UBN2 PF14223.1 g88019.t1 - 0.0015 18.2 0.2 0.0021 17.8 0.1 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:225877-227257 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~225877-227257 DUF4283 PF14111.1 g100920.t1 - 0.00043 19.4 0 0.001 18.1 0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:344216-345286 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~344216-345286 AnfO_nitrog PF09582.5 g43643.t1 - 0.018 14.1 0 0.022 13.8 0 1 1 0 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:245369-246160 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~245369-246160 eIF3g PF12353.3 g81073.t1 - 0.18 11.6 2.1 0.27 11.1 1.5 1.3 1 1 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:170019-170467 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~170019-170467 Docking PF08990.6 g42128.t1 - 0.06 12.6 1.3 0.097 11.9 0.9 1.4 1 0 0 1 1 1 0 Erythronolide synthase docking | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:83265-83510 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~83265-83510 Clusterin PF01093.12 g100680.t1 - 0.066 12 0.8 0.072 11.8 0.6 1 1 0 0 1 1 1 0 Clusterin | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:235676-235985 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~235676-235985 Cupredoxin_1 PF13473.1 g91547.t1 - 0.032 14.1 0.4 0.064 13.1 0.2 1.6 1 1 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:219887-222533 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~219887-222533 DUF826 PF05696.6 g60827.t1 - 0.11 12.6 0.3 0.15 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF826) | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:249965-250174 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~249965-250174 Phage_integrase PF00589.17 g130081.t1 - 0.12 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:3381-3725 Augustus predicted protein sequence Tobacco scaffold3413_contigs=1~3381-3725 Gloverin PF10793.4 g18418.t1 - 0.12 12 0.1 0.22 11.1 0 1.4 1 1 0 1 1 1 0 Gloverin-like protein | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:52146-53016 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~52146-53016 ANATO PF01821.13 g125760.t1 - 0.089 12.9 0.3 0.17 12 0.2 1.4 1 0 0 1 1 1 0 Anaphylotoxin-like domain | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:84406-84930 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~84406-84930 DASH_Dad1 PF08649.5 g112086.t1 - 0.03 13.9 0 10 5.9 0 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad1 | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:118296-120183 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~118296-120183 DUF1214 PF06742.6 g22884.t1 - 0.11 12.9 0.1 0.14 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1214) | Ref_seq=scaffold627_contigs=2, transcript_loc=scaffold627_contigs=2:119318-120527 Augustus predicted protein sequence Tobacco scaffold627_contigs=2~119318-120527 gag-asp_proteas PF13975.1 g4440.t1 - 0.000054 22.9 0 0.00014 21.6 0 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:229914-230279 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~229914-230279 DDE_Tnp_Tn3 PF01526.12 g13450.t1 - 0.02 13.5 0.1 0.023 13.3 0 1 1 0 0 1 1 1 0 Tn3 transposase DDE domain | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:52379-54249 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~52379-54249 RNA_pol_3_Rpc31 PF11705.3 g23271.t1 - 0.57 10 11.4 0.65 9.8 7.9 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:119636-120353 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~119636-120353 RR_TM4-6 PF06459.7 g32739.t1 - 7.1 6.4 10.1 9.4 6 7 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:794295-794774 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~794295-794774 DUF1451 PF07295.6 g70069.t1 - 0.15 11.7 2.6 0.18 11.5 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:189372-189587 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~189372-189587 IQ PF00612.22 g101086.t1 - 0.42 10.3 2 0.62 9.8 0.5 1.9 2 0 0 2 2 2 0 IQ calmodulin-binding motif | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:46419-46673 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~46419-46673 DUF4219 PF13961.1 g76726.t1 - 0.0054 16.1 2.5 0.0056 16 0.3 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:100725-100961 Augustus predicted protein sequence Tobacco scaffold1619_contigs=7~100725-100961 RimM PF01782.13 g94402.t1 - 0.027 14.3 0.5 0.033 14 0.4 1.1 1 0 0 1 1 1 0 RimM N-terminal domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:854048-854278 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~854048-854278 Nop14 PF04147.7 g94663.t1 - 0.0027 15.7 13.5 0.003 15.5 9.3 1.2 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:255184-255876 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~255184-255876 DUF3219 PF11514.3 g106497.t1 - 0.0056 16.5 0 0.018 14.9 0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3219) | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:80524-81378 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~80524-81378 Nop14 PF04147.7 g11193.t1 - 0.091 10.6 19.3 0.15 9.9 13.4 1.3 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:312650-313807 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~312650-313807 MNNL PF07657.8 g126662.t1 - 0.69 9.8 4.1 0.28 11.1 0.5 2 2 1 1 3 3 3 0 N terminus of Notch ligand | Ref_seq=scaffold2802_contigs=1, transcript_loc=scaffold2802_contigs=1:16985-19241 Augustus predicted protein sequence Tobacco scaffold2802_contigs=1~16985-19241 DUF2993 PF11209.3 g28530.t1 - 0.0071 16.2 0.1 0.009 15.9 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2993) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:142200-142615 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~142200-142615 DUF1801 PF08818.6 g490.t1 - 0.13 12.4 0 0.14 12.3 0 1 1 0 0 1 1 1 0 Domain of unknown function (DU1801) | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:29210-29434 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~29210-29434 DUF4509 PF14970.1 g2767.t1 - 0.078 12.6 0.4 0.098 12.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4509) | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:41963-43386 Augustus predicted protein sequence Tobacco scaffold218_contigs=4~41963-43386 Laminin_I PF06008.9 g41967.t1 - 0.0063 15.8 0.1 0.007 15.7 0.1 1.1 1 0 0 1 1 1 1 Laminin Domain I | Ref_seq=scaffold996_contigs=3, transcript_loc=scaffold996_contigs=3:80-325 Augustus predicted protein sequence Tobacco scaffold996_contigs=3~80-325 RVT_3 PF13456.1 g15475.t1 - 0.036 13.8 0.5 0.21 11.3 0.2 1.9 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:436294-436536 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~436294-436536 ET PF01684.11 g105639.t1 - 0.086 12.8 0 0.11 12.5 0 1.2 1 0 0 1 1 1 0 ET module | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:115892-116092 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~115892-116092 zf-RVT PF13966.1 g45901.t1 - 0.0009 19.5 0.1 0.00097 19.4 0.1 1.2 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1051_contigs=2, transcript_loc=scaffold1051_contigs=2:137606-137899 Augustus predicted protein sequence Tobacco scaffold1051_contigs=2~137606-137899 HemY_N PF07219.8 g100525.t1 - 0.013 15 0.2 0.015 14.8 0.2 1.1 1 0 0 1 1 1 0 HemY protein N-terminus | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:97312-97866 Augustus predicted protein sequence Tobacco scaffold2197_contigs=7~97312-97866 DUF1985 PF09331.6 g84425.t1 - 0.0036 17.1 0 0.0036 17 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:296057-296296 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~296057-296296 Trypan_PARP PF05887.6 g17078.t1 - 0.032 14 0.3 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:411116-411490 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~411116-411490 TFIID_20kDa PF03847.8 g15932.t1 - 0.075 13.3 1 5.4 7.3 0.3 2.1 2 0 0 2 2 2 0 Transcription initiation factor TFIID subunit A | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:99732-100052 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~99732-100052 DUF3095 PF11294.3 g54304.t1 - 0.043 12.8 0.1 0.058 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:180943-181155 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~180943-181155 DUF982 PF06169.7 g81764.t1 - 0.0095 15.6 0.6 0.03 14 0.2 2 1 1 2 3 3 3 1 Protein of unknown function (DUF982) | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:46549-46836 Augustus predicted protein sequence Tobacco scaffold1736_contigs=8~46549-46836 IBV_3A PF03617.8 g9887.t1 - 0.011 15.4 0.8 0.019 14.6 0.6 1.4 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:256970-257929 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~256970-257929 CBP4 PF07960.6 g128804.t1 - 8 6 8.7 4.1 7 0.2 2.1 2 0 0 2 2 2 0 CBP4 | Ref_seq=scaffold2890_contigs=1, transcript_loc=scaffold2890_contigs=1:28137-29920 Augustus predicted protein sequence Tobacco scaffold2890_contigs=1~28137-29920 DUF3778 PF12620.3 g14581.t1 - 0.15 11.6 0.3 0.23 11 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:30025-30779 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~30025-30779 HTH_5 PF01022.15 g113533.t1 - 0.00094 18.8 0.2 0.0017 17.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:4623-5021 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~4623-5021 Toxin_39 PF15500.1 g86093.t1 - 0.06 13.4 0.1 0.07 13.2 0 1.2 1 0 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:165310-165567 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~165310-165567 DASH_Dad1 PF08649.5 g68632.t1 - 0.15 11.7 0 1.1 9 0 2 2 0 0 2 2 2 0 DASH complex subunit Dad1 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:662564-664129 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~662564-664129 SNN_linker PF09050.5 g79935.t1 - 0.021 14.3 0.6 1 8.9 0 2.3 2 0 0 2 2 2 0 Stannin unstructured linker | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:283212-284837 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~283212-284837 UPF0560 PF10577.4 g122650.t1 - 0.27 9.4 2.5 0.31 9.2 1.7 1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:48636-49697 Augustus predicted protein sequence Tobacco scaffold2747_contigs=3~48636-49697 Polyoma_agno PF01736.11 g89181.t1 - 0.021 14.4 2.4 3.9 7.1 0.1 2.4 2 0 0 2 2 2 0 Polyomavirus agnoprotein | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:30467-31668 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~30467-31668 SF3b1 PF08920.5 g110991.t1 - 0.01 15.8 0 0.037 14 0 1.8 2 0 0 2 2 2 0 Splicing factor 3B subunit 1 | Ref_seq=scaffold2572_contigs=14, transcript_loc=scaffold2572_contigs=14:9593-10621 Augustus predicted protein sequence Tobacco scaffold2572_contigs=14~9593-10621 DUF1682 PF07946.9 g8212.t1 - 0.047 12.5 11.7 0.058 12.2 8.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:9882-11645 Augustus predicted protein sequence Tobacco scaffold332_contigs=3~9882-11645 BSP_II PF05432.6 g84642.t1 - 0.013 14.7 10.2 0.018 14.3 7.1 1.3 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1825_contigs=2, transcript_loc=scaffold1825_contigs=2:46574-47754 Augustus predicted protein sequence Tobacco scaffold1825_contigs=2~46574-47754 Cwf_Cwc_15 PF04889.7 g59808.t1 - 0.0066 16.1 0.5 0.0066 16.1 0.4 1.1 1 0 0 1 1 1 1 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:242859-243542 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~242859-243542 PADR1 PF08063.7 g20758.t1 - 0.22 10.9 2.2 3.2 7.2 0 2.5 2 1 1 3 3 3 0 PADR1 (NUC008) domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:198001-198381 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~198001-198381 DUF3116 PF11313.3 g83346.t1 - 0.0007 19.1 0.7 1.1 8.8 0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3116) | Ref_seq=scaffold1789_contigs=1, transcript_loc=scaffold1789_contigs=1:2673-3313 Augustus predicted protein sequence Tobacco scaffold1789_contigs=1~2673-3313 RIX1 PF08167.7 g84180.t1 - 0.053 13.2 0.1 0.074 12.7 0.1 1.2 1 0 0 1 1 1 0 rRNA processing/ribosome biogenesis | Ref_seq=scaffold1814_contigs=1, transcript_loc=scaffold1814_contigs=1:1749-2123 Augustus predicted protein sequence Tobacco scaffold1814_contigs=1~1749-2123 Helicase_IV_N PF12462.3 g81017.t1 - 0.027 14.1 0.1 0.036 13.7 0.1 1.2 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:48761-49225 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~48761-49225 HTH_AsnC-type PF13404.1 g35818.t1 - 0.086 12.3 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:504589-505380 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~504589-505380 DUF3235 PF11574.3 g68954.t1 - 0.34 11.1 1.8 0.35 11.1 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3235) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:195772-196077 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~195772-196077 zf-CCHC_4 PF14392.1 g25837.t1 - 0.0082 15.7 0.1 0.014 15 0.1 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold705_contigs=2, transcript_loc=scaffold705_contigs=2:9911-11661 Augustus predicted protein sequence Tobacco scaffold705_contigs=2~9911-11661 Mannitol_dh_C PF08125.8 g43878.t1 - 0.11 11.7 0.1 0.14 11.2 0.1 1.1 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:223297-223644 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~223297-223644 RasGEF PF00617.14 g61391.t1 - 0.044 13.5 0.3 0.12 12 0 1.7 2 0 0 2 2 2 0 RasGEF domain | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:129630-130793 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~129630-130793 Filament PF00038.16 g38322.t1 - 0.0057 16.1 2.2 0.0057 16.1 1.5 1.6 2 0 0 2 2 2 1 Intermediate filament protein | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:359347-361001 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~359347-361001 WT1 PF02165.10 g102104.t1 - 0.11 11.5 0.1 0.13 11.3 0 1 1 0 0 1 1 1 0 Wilm's tumour protein | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:90169-90411 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~90169-90411 MCR_C PF04609.7 g60083.t1 - 0.034 12.9 0.2 0.043 12.6 0.1 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein C | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:277424-277798 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~277424-277798 DUF1985 PF09331.6 g117339.t1 - 0.000014 24.8 0 0.074 12.8 0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:249764-251328 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~249764-251328 YL1 PF05764.8 g66463.t1 - 0.65 9.5 3.5 0.69 9.4 2.4 1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:136481-137126 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~136481-137126 Coronavirus_5 PF05528.6 g34060.t1 - 0.052 13.3 0.1 0.16 11.8 0 1.8 2 0 0 2 2 2 0 Coronavirus gene 5 protein | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:180175-185727 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~180175-185727 Herpes_UL14 PF03580.9 g125646.t1 - 0.11 12.2 0.6 0.15 11.8 0.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL14-like protein | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:110157-110540 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~110157-110540 DUF4268 PF14088.1 g96588.t1 - 0.015 14.9 0.2 4.6 6.8 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4268) | Ref_seq=scaffold2114_contigs=7, transcript_loc=scaffold2114_contigs=7:4406-5286 Augustus predicted protein sequence Tobacco scaffold2114_contigs=7~4406-5286 DUF4207 PF13904.1 g99392.t1 - 0.024 14 22.1 0.029 13.7 15.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4207) | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:412601-413149 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~412601-413149 DUF1900 PF08954.6 g23061.t1 - 0.1 12 0.6 0.78 9.2 0 2.4 3 1 1 4 4 4 0 Domain of unknown function (DUF1900) | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:4986-5884 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~4986-5884 BNIP3 PF06553.7 g41998.t1 - 0.091 12.1 0.3 0.12 11.7 0.2 1.3 1 1 0 1 1 1 0 BNIP3 | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:6119-6734 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~6119-6734 SPOUT_MTase_2 PF14419.1 g110203.t1 - 0.028 13.6 0.1 0.04 13.1 0.1 1.1 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:67413-68496 Augustus predicted protein sequence Tobacco scaffold2530_contigs=9~67413-68496 HTH_8 PF02954.14 g103728.t1 - 0.0016 17.9 0 0.81 9.2 0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:18122-18334 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~18122-18334 CALCOCO1 PF07888.6 g20841.t1 - 0.0017 16.7 1.3 0.0028 16 0.6 1.5 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:348282-348521 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~348282-348521 DUF2564 PF10819.3 g39376.t1 - 0.42 10.7 2.5 0.27 11.3 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:32036-32302 Augustus predicted protein sequence Tobacco scaffold954_contigs=1~32036-32302 Calci_bind_CcbP PF11535.3 g72433.t1 - 0.11 12.8 0.3 0.15 12.2 0.2 1.2 1 0 0 1 1 1 0 Calcium binding | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1094169-1095477 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1094169-1095477 ATHILA PF03078.10 g59777.t1 - 0.00000026 29.6 0 0.0000081 24.6 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:179222-179839 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~179222-179839 DUF3737 PF12541.3 g100797.t1 - 0.0073 15.3 0.3 0.0073 15.3 0.2 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3737) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:23138-23458 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~23138-23458 PAT1 PF09770.4 g85941.t1 - 3.2 5.8 9.9 3.7 5.6 6.8 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:189705-190367 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~189705-190367 PT-VENN PF04829.8 g28396.t1 - 0.4 10.2 6.6 1.1 8.8 0.9 2.1 1 1 0 2 2 2 0 Pre-toxin domain with VENN motif | Ref_seq=scaffold745_contigs=9, transcript_loc=scaffold745_contigs=9:13756-14297 Augustus predicted protein sequence Tobacco scaffold745_contigs=9~13756-14297 Transposase_28 PF04195.7 g93927.t1 - 0.067 12.4 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:174346-176480 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~174346-176480 Zip PF02535.17 g117617.t1 - 0.014 14.4 6.1 0.018 14 4.2 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:165978-166337 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~165978-166337 Tropomyosin_1 PF12718.2 g36004.t1 - 0.021 14.6 3.5 0.02 14.7 1.9 1.4 1 1 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:63531-63908 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~63531-63908 UPF0449 PF15136.1 g50660.t1 - 0.034 14.3 0 0.035 14.2 0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:193747-193968 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~193747-193968 CCDC155 PF14662.1 g82634.t1 - 0.011 15.3 3.2 0.75 9.3 0.1 2.2 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold1759_contigs=3, transcript_loc=scaffold1759_contigs=3:55349-55705 Augustus predicted protein sequence Tobacco scaffold1759_contigs=3~55349-55705 Pol_alpha_B_N PF08418.5 g22000.t1 - 0.31 10.5 3.9 0.33 10.4 2.7 1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:71776-72114 Augustus predicted protein sequence Tobacco scaffold607_contigs=8~71776-72114 RVP_2 PF08284.6 g104894.t1 - 9.8E-021 74.1 3.2 1.6E-011 44.2 0.3 2.1 1 1 1 2 2 2 2 Retroviral aspartyl protease | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:47787-48571 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~47787-48571 HALZ PF02183.13 g95709.t1 - 0.0033 17 0.5 0.0033 17 0.3 2.9 2 1 1 3 3 3 1 Homeobox associated leucine zipper | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:154370-154822 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~154370-154822 DUF2407 PF10302.4 g54239.t1 - 0.12 12.5 0.1 0.13 12.4 0.1 1.1 1 0 0 1 1 1 0 DUF2407 ubiquitin-like domain | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:71375-73655 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~71375-73655 DUF3136 PF11334.3 g97561.t1 - 0.05 13 0.1 0.093 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:168250-169164 Augustus predicted protein sequence Tobacco scaffold2138_contigs=7~168250-169164 DegS PF05384.6 g47630.t1 - 0.045 12.9 0.1 0.062 12.5 0.1 1.2 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:380959-381399 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~380959-381399 RXT2_N PF08595.6 g28470.t1 - 0.082 12.7 0.3 0.082 12.7 0.2 1.4 2 0 0 2 2 2 0 RXT2-like, N-terminal | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:174704-175030 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~174704-175030 DUF814 PF05670.8 g98274.t1 - 0.053 13.4 0 0.07 13 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF814) | Ref_seq=scaffold2157_contigs=5, transcript_loc=scaffold2157_contigs=5:20845-22109 Augustus predicted protein sequence Tobacco scaffold2157_contigs=5~20845-22109 Prp19_bind PF06991.6 g34075.t1 - 0.13 11.5 0.2 0.14 11.4 0.2 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold842_contigs=5, transcript_loc=scaffold842_contigs=5:22077-22349 Augustus predicted protein sequence Tobacco scaffold842_contigs=5~22077-22349 EF1G PF00647.14 g59058.t1 - 0.0068 16 0 0.0086 15.7 0 1.2 1 0 0 1 1 1 1 Elongation factor 1 gamma, conserved domain | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:138086-138492 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~138086-138492 SplA PF11132.3 g83952.t1 - 0.055 13.2 0 0.065 12.9 0 1.2 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:160353-160598 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~160353-160598 DUF3481 PF11980.3 g92508.t1 - 0.03 14.1 0 0.04 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3481) | Ref_seq=scaffold1989_contigs=5, transcript_loc=scaffold1989_contigs=5:166770-167141 Augustus predicted protein sequence Tobacco scaffold1989_contigs=5~166770-167141 SR-25 PF10500.4 g14105.t1 - 0.31 10.4 7.6 0.4 10.1 5.2 1.3 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:49986-50222 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~49986-50222 EpoR_lig-bind PF09067.5 g115270.t1 - 0.097 12.6 0 0.1 12.6 0 1.1 1 0 0 1 1 1 0 Erythropoietin receptor, ligand binding | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:360665-360880 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~360665-360880 Troponin-I_N PF11636.3 g89523.t1 - 0.0022 17.6 7.5 6.3 6.5 0.1 3.9 3 0 0 3 3 3 3 Troponin I residues 1-32 | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:197357-199373 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~197357-199373 Drf_FH1 PF06346.7 g77357.t1 - 0.044 13.2 1.2 0.053 13 0.8 1.1 1 0 0 1 1 1 0 Formin Homology Region 1 | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:365334-365558 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~365334-365558 IU_nuc_hydro PF01156.14 g119909.t1 - 0.076 12.2 0.1 0.1 11.7 0 1 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:499778-502578 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~499778-502578 Molybdop_Fe4S4 PF04879.11 g30437.t1 - 0.022 14.5 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:795514-796551 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~795514-796551 CCDC-167 PF15188.1 g25983.t1 - 0.039 13.8 3 2.2 8.2 0.3 2.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:232572-233710 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~232572-233710 dsrm PF00035.20 g11755.t1 - 0.22 12.1 5.2 10 6.7 2.9 2.1 2 0 0 2 2 2 0 Double-stranded RNA binding motif | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:92169-92517 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~92169-92517 DUF2694 PF10904.3 g119604.t1 - 0.038 14 0 0.063 13.2 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:27706-28281 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~27706-28281 P2X_receptor PF00864.14 g69462.t1 - 0.15 10.7 0 0.19 10.3 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:78455-79289 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~78455-79289 PLRV_ORF5 PF01690.12 g74933.t1 - 0.077 12.1 4.8 0.22 10.6 0 2 2 0 0 2 2 2 0 Potato leaf roll virus readthrough protein | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:132557-132766 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~132557-132766 PNRC PF15365.1 g128594.t1 - 0.11 12.5 0.2 0.29 11.1 0.2 1.7 1 0 0 1 1 1 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold2877_contigs=1, transcript_loc=scaffold2877_contigs=1:1-761 Augustus predicted protein sequence Tobacco scaffold2877_contigs=1~1-761 IMS_C PF11799.3 g39267.t1 - 0.11 12.4 0.1 0.12 12.3 0 1 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:262378-262828 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~262378-262828 DUF977 PF06163.6 g19929.t1 - 0.022 14.5 0.1 0.027 14.2 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:65884-66324 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~65884-66324 CCT_2 PF09425.5 g100176.t1 - 0.000000034 32.8 2.8 0.000000081 31.6 1.9 1.7 1 0 0 1 1 1 1 Divergent CCT motif | Ref_seq=scaffold2186_contigs=16, transcript_loc=scaffold2186_contigs=16:98288-100196 Augustus predicted protein sequence Tobacco scaffold2186_contigs=16~98288-100196 Nucleoplasmin PF03066.10 g21785.t1 - 0.0089 15.5 1.3 0.0089 15.5 0.9 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:168863-169213 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~168863-169213 Ery_res_leader2 PF08057.6 g102536.t1 - 1 9.6 3.3 0.83 9.8 0.9 1.9 2 0 0 2 2 2 0 Erythromycin resistance leader peptide | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:26420-26782 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~26420-26782 DUF2215 PF10225.4 g43571.t1 - 0.57 9.5 2.4 0.58 9.5 1.7 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:52422-52667 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~52422-52667 Thiol-ester_cl PF10569.4 g1076.t1 - 0.0087 15.2 0.1 0.0087 15.2 0.1 1.7 2 0 0 2 2 2 1 Alpha-macro-globulin thiol-ester bond-forming region | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:248470-248694 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~248470-248694 DUF3918 PF13056.1 g53623.t1 - 0.25 10.7 0.2 0.25 10.7 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3918) | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:210940-211239 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~210940-211239 Retrotrans_gag PF03732.12 g92330.t1 - 0.12 12.4 0 0.35 10.9 0 1.7 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:288650-290021 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~288650-290021 DUF3453 PF11935.3 g9774.t1 - 0.016 14.5 0 0.022 14.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3453) | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:183701-184204 Augustus predicted protein sequence Tobacco scaffold379_contigs=8~183701-184204 DUF2065 PF09838.4 g25621.t1 - 0.43 10.3 0.1 0.43 10.3 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:120602-122184 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~120602-122184 Uds1 PF15456.1 g60918.t1 - 0.24 11.4 2 0.32 10.9 1.4 1.2 1 0 0 1 1 1 0 Up-regulated During Septation | Ref_seq=scaffold1324_contigs=9, transcript_loc=scaffold1324_contigs=9:19696-20208 Augustus predicted protein sequence Tobacco scaffold1324_contigs=9~19696-20208 UBN2 PF14223.1 g19984.t1 - 0.017 14.8 0 0.032 13.9 0 1.5 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:223000-223775 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~223000-223775 YL1 PF05764.8 g35847.t1 - 0.1 12.2 9.8 0.11 12 6.8 1.1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:619541-619926 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~619541-619926 DUF1091 PF06477.8 g51745.t1 - 0.11 12.9 0 0.16 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:126557-126949 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~126557-126949 SP_C-Propep PF08999.5 g29413.t1 - 0.0063 15.9 8.8 0.0065 15.9 6.1 1.1 1 0 0 1 1 1 1 Surfactant protein C, N terminal propeptide | Ref_seq=scaffold758_contigs=7, transcript_loc=scaffold758_contigs=7:245846-246410 Augustus predicted protein sequence Tobacco scaffold758_contigs=7~245846-246410 YecM PF06185.7 g109800.t1 - 0.0081 15.3 0 0.0091 15.2 0 1.1 1 0 0 1 1 1 1 YecM protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:179337-179576 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~179337-179576 FAA_hydrolase PF01557.13 g87293.t1 - 0.065 12.6 0 0.068 12.6 0 1.1 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:237015-238664 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~237015-238664 K-box PF01486.12 g32850.t1 - 0.095 12.5 0.9 0.15 11.8 0.1 1.7 2 0 0 2 2 2 0 K-box region | Ref_seq=scaffold822_contigs=2, transcript_loc=scaffold822_contigs=2:42308-42907 Augustus predicted protein sequence Tobacco scaffold822_contigs=2~42308-42907 PADR1 PF08063.7 g14008.t1 - 0.15 11.4 3.7 39 3.7 0.1 3.3 3 0 0 3 3 3 0 PADR1 (NUC008) domain | Ref_seq=scaffold459_contigs=2, transcript_loc=scaffold459_contigs=2:1999-4875 Augustus predicted protein sequence Tobacco scaffold459_contigs=2~1999-4875 MHCassoc_trimer PF08831.5 g19273.t1 - 0.43 10.4 2.1 0.65 9.8 1.2 1.6 1 1 1 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold562_contigs=3, transcript_loc=scaffold562_contigs=3:117071-117361 Augustus predicted protein sequence Tobacco scaffold562_contigs=3~117071-117361 RE_ScaI PF09569.5 g68543.t1 - 0.04 13.4 0 0.04 13.4 0 1 1 0 0 1 1 1 0 ScaI restriction endonuclease | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:400445-400741 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~400445-400741 DUF3511 PF12023.3 g6778.t1 - 0.068 12.5 0.4 0.2 11 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3511) | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:169859-170104 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~169859-170104 Phage_F PF02305.12 g49606.t1 - 0.018 13.6 0 0.019 13.5 0 1 1 0 0 1 1 1 0 Capsid protein (F protein) | Ref_seq=scaffold1130_contigs=3, transcript_loc=scaffold1130_contigs=3:25388-25789 Augustus predicted protein sequence Tobacco scaffold1130_contigs=3~25388-25789 HPIH PF13323.1 g100635.t1 - 0.015 14.9 0.3 0.016 14.8 0.2 1.1 1 0 0 1 1 1 0 N-terminal domain with HPIH motif | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:145924-146995 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~145924-146995 DUF936 PF06075.7 g85484.t1 - 0.084 11.7 0.7 0.096 11.5 0.5 1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF936) | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:212466-213523 Augustus predicted protein sequence Tobacco scaffold1834_contigs=13~212466-213523 DUF1178 PF06676.6 g39914.t1 - 0.035 14.2 0.2 0.052 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) | Ref_seq=scaffold963_contigs=16, transcript_loc=scaffold963_contigs=16:9677-10193 Augustus predicted protein sequence Tobacco scaffold963_contigs=16~9677-10193 DUF2790 PF10976.3 g112366.t1 - 0.077 12.7 0 15 5.4 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2790) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:214168-217546 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~214168-217546 APG12 PF04110.8 g17692.t1 - 0.016 15.4 0 0.031 14.4 0 1.5 1 0 0 1 1 1 0 Ubiquitin-like autophagy protein Apg12 | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:89644-91867 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~89644-91867 Ashwin PF15323.1 g20917.t1 - 0.048 13.6 1.4 0.056 13.4 0.9 1.1 1 0 0 1 1 1 0 Developmental protein | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:60756-61252 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~60756-61252 Sigma70_ner PF04546.8 g14741.t1 - 0.016 14.8 0.2 0.022 14.3 0.1 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:101310-102108 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~101310-102108 DUF3774 PF12609.3 g97648.t1 - 0.000000066 33.2 0.2 0.000000078 33 0.1 1.2 1 0 0 1 1 1 1 Wound-induced protein | Ref_seq=scaffold2143_contigs=4, transcript_loc=scaffold2143_contigs=4:879-1100 Augustus predicted protein sequence Tobacco scaffold2143_contigs=4~879-1100 DUF4219 PF13961.1 g123610.t1 - 0.0048 16.2 0.1 0.0081 15.5 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:112173-112448 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~112173-112448 AAA_27 PF13514.1 g75487.t1 - 0.000063 20.8 1.9 0.000077 20.6 1.3 1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:67324-68027 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~67324-68027 RALF PF05498.6 g8036.t1 - 0.000024 25 0.2 0.000039 24.3 0.1 1.4 1 0 0 1 1 1 1 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold327_contigs=7, transcript_loc=scaffold327_contigs=7:267419-267652 Augustus predicted protein sequence Tobacco scaffold327_contigs=7~267419-267652 NifT PF06988.6 g20592.t1 - 0.067 12.6 0 0.12 11.8 0 1.5 1 1 0 1 1 1 0 NifT/FixU protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:518786-519055 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~518786-519055 Tropomyosin PF00261.15 g60236.t1 - 0.015 14.4 3.6 0.02 13.9 2.5 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:11882-13302 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~11882-13302 Fun_ATP-synt_8 PF05933.8 g111788.t1 - 0.034 14.1 1 0.05 13.6 0.7 1.3 1 0 0 1 1 1 0 Fungal ATP synthase protein 8 (A6L) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:226586-226846 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~226586-226846 IncA PF04156.9 g101873.t1 - 0.051 13.1 0.4 0.054 13 0.3 1.1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:89317-89577 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~89317-89577 tRNA-Thr_ED PF08915.6 g98361.t1 - 0.14 12 0.3 0.21 11.5 0.2 1.3 1 0 0 1 1 1 0 Archaea-specific editing domain of threonyl-tRNA synthetase | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:6591-8584 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~6591-8584 Defensin_2 PF01097.13 g106258.t1 - 0.15 11.8 0.8 1.5 8.5 0.1 2.1 2 0 0 2 2 2 0 Arthropod defensin | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:17396-17626 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~17396-17626 zf-C4_ClpX PF06689.8 g112015.t1 - 0.0042 16.5 0.8 0.0071 15.8 0.5 1.4 1 0 0 1 1 1 1 ClpX C4-type zinc finger | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:71846-72328 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~71846-72328 NAM-associated PF14303.1 g27864.t1 - 0.00018 21.8 0.6 0.00025 21.4 0.4 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:434403-436357 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~434403-436357 Lamp PF01299.12 g1137.t1 - 0.057 12.5 1.5 0.06 12.4 1 1 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:446979-447562 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~446979-447562 GRP PF07172.6 g72740.t1 - 0.43 11 5.8 0.065 13.7 1.5 1.5 2 0 0 2 2 2 0 Glycine rich protein family | Ref_seq=scaffold1520_contigs=13, transcript_loc=scaffold1520_contigs=13:189941-190339 Augustus predicted protein sequence Tobacco scaffold1520_contigs=13~189941-190339 Phage_integrase PF00589.17 g130078.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:218-562 Augustus predicted protein sequence Tobacco scaffold3413_contigs=1~218-562 SidE PF12252.3 g16748.t1 - 0.012 12.9 0.7 0.013 12.8 0.5 1 1 0 0 1 1 1 0 Dot/Icm substrate protein | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:285982-286353 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~285982-286353 LEA_6 PF10714.4 g47524.t1 - 0.036 13.8 0.6 0.054 13.3 0.4 1.3 1 0 0 1 1 1 0 Late embryogenesis abundant protein 18 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:164174-165709 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~164174-165709 bZIP_2 PF07716.10 g110390.t1 - 0.065 13 0.9 0.12 12.2 0.6 1.4 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:50500-50757 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~50500-50757 Replic_Relax PF13814.1 g119034.t1 - 0.089 12.6 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:817537-817976 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~817537-817976 zf-CCHC PF00098.18 g29543.t1 - 0.000025 23.9 0.7 0.000037 23.4 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:163735-164046 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~163735-164046 SLR1-BP PF07333.7 g121985.t1 - 0.0097 16.1 7.7 0.02 15.1 5.4 1.5 1 1 0 1 1 1 1 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2740_contigs=4, transcript_loc=scaffold2740_contigs=4:45777-46007 Augustus predicted protein sequence Tobacco scaffold2740_contigs=4~45777-46007 PADR1 PF08063.7 g122548.t1 - 0.39 10.1 3 16 5 0.5 2.8 2 1 1 3 3 3 0 PADR1 (NUC008) domain | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:225582-225992 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~225582-225992 DUF3895 PF13034.1 g120517.t1 - 0.12 11.9 0 0.17 11.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:129788-130075 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~129788-130075 GtrA PF04138.9 g56450.t1 - 0.49 10.3 13.8 0.66 9.9 8.7 1.8 2 0 0 2 2 2 0 GtrA-like protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:157717-161116 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~157717-161116 PseudoU_synth_1 PF01416.15 g73705.t1 - 0.019 15.3 0 0.026 14.9 0 1.2 1 0 0 1 1 1 0 tRNA pseudouridine synthase | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:234380-234953 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~234380-234953 Chlam_vir PF05475.6 g3829.t1 - 0.12 11.4 0 0.16 11 0 1.2 1 0 0 1 1 1 0 Chlamydia virulence protein PGP3-D | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:94040-94660 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~94040-94660 RVT_3 PF13456.1 g118417.t1 - 0.000081 22.3 0 0.00012 21.7 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:24726-26036 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~24726-26036 DUF1643 PF07799.7 g27144.t1 - 0.064 12.9 2.4 4.9 6.8 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1643) | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:323274-323870 Augustus predicted protein sequence Tobacco scaffold721_contigs=12~323274-323870 Gp-FAR-1 PF05823.7 g127992.t1 - 0.11 12.4 0 0.14 12.1 0 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) | Ref_seq=scaffold2845_contigs=1, transcript_loc=scaffold2845_contigs=1:18103-18393 Augustus predicted protein sequence Tobacco scaffold2845_contigs=1~18103-18393 Med8 PF10232.4 g70262.t1 - 0.031 13.7 3 1.4 8.3 0.4 2.1 2 0 0 2 2 2 0 Mediator of RNA polymerase II transcription complex subunit 8 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:180421-182224 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~180421-182224 Glyco_transf_7N PF13733.1 g4619.t1 - 0.047 13 0.1 10 5.4 0 2.3 2 0 0 2 2 2 0 N-terminal region of glycosyl transferase group 7 | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:28803-31150 Augustus predicted protein sequence Tobacco scaffold259_contigs=7~28803-31150 HrpA_pilin PF09589.5 g64257.t1 - 0.48 10.8 3.5 0.31 11.4 1.3 1.5 2 0 0 2 2 2 0 HrpA pilus formation protein | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:296597-297433 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~296597-297433 PepSY_TM_3 PF13706.1 g13043.t1 - 0.016 14.6 1.9 0.033 13.5 1.3 1.5 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:218966-219457 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~218966-219457 Ribosomal_S28e PF01200.13 g96296.t1 - 0.07 12.8 0.5 0.16 11.7 0.3 1.6 1 1 0 1 1 1 0 Ribosomal protein S28e | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:43505-43753 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~43505-43753 DUF3486 PF11985.3 g77686.t1 - 0.0013 18.8 0.3 0.0032 17.5 0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3486) | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:69887-70510 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~69887-70510 Gemini_mov PF01708.11 g26179.t1 - 0.0059 16.1 0 0.0081 15.6 0 1.2 1 0 0 1 1 1 1 Geminivirus putative movement protein | Ref_seq=scaffold711_contigs=2, transcript_loc=scaffold711_contigs=2:65920-66225 Augustus predicted protein sequence Tobacco scaffold711_contigs=2~65920-66225 Perilipin PF03036.11 g76358.t1 - 0.024 13.4 0.7 0.03 13.1 0.5 1.1 1 0 0 1 1 1 0 Perilipin family | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:31299-31984 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~31299-31984 DUF4611 PF15387.1 g9153.t1 - 0.14 12.3 3.7 0.54 10.4 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:20847-21256 Augustus predicted protein sequence Tobacco scaffold353_contigs=4~20847-21256 zf-CCHC PF00098.18 g99866.t1 - 0.0025 17.6 1.4 0.0048 16.7 0.9 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:236998-237664 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~236998-237664 zf-HIT PF04438.11 g102589.t1 - 0.038 13.6 2 6.4 6.5 0.1 2.5 2 0 0 2 2 2 0 HIT zinc finger | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:164231-165620 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~164231-165620 KIF1B PF12423.3 g44200.t1 - 0.45 10.5 2.6 2.4 8.2 0.6 2.3 2 0 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:209200-209529 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~209200-209529 Nol1_Nop2_Fmu_2 PF13636.1 g59112.t1 - 0.11 12.6 0 0.11 12.6 0 1.2 1 0 0 1 1 1 0 pre-rRNA processing and ribosome biogenesis | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:5621-6331 Augustus predicted protein sequence Tobacco scaffold1281_contigs=3~5621-6331 Omega-toxin PF06357.6 g96798.t1 - 0.048 13.2 0.6 0.087 12.4 0.4 1.4 1 0 0 1 1 1 0 Omega-atracotoxin | Ref_seq=scaffold2121_contigs=3, transcript_loc=scaffold2121_contigs=3:3253-4036 Augustus predicted protein sequence Tobacco scaffold2121_contigs=3~3253-4036 Orthopox_35kD PF02250.10 g45817.t1 - 0.1 11.8 0.1 0.14 11.4 0 1.1 1 0 0 1 1 1 0 35kD major secreted virus protein | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:138320-139884 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~138320-139884 Dimer_Tnp_hAT PF05699.9 g50317.t1 - 0.00013 21.4 0 0.00033 20.2 0 1.6 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:29512-35398 Augustus predicted protein sequence Tobacco scaffold1137_contigs=5~29512-35398 Acetyltransf_6 PF13480.1 g116043.t1 - 0.044 13.7 1.3 0.052 13.4 0.9 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:531038-531406 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~531038-531406 His_kinase PF06580.8 g103693.t1 - 0.053 13.4 0.1 0.061 13.2 0 1.1 1 0 0 1 1 1 0 Histidine kinase | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:72033-72242 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~72033-72242 Syntaxin_2 PF14523.1 g88653.t1 - 0.084 12.9 0.4 0.18 11.8 0.3 1.6 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:92053-94467 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~92053-94467 YdfZ PF14001.1 g2924.t1 - 0.057 13.6 0 0.67 10.2 0 2.5 2 1 1 3 3 3 0 YdfZ protein | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:67531-69950 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~67531-69950 DUF1151 PF06625.6 g18602.t1 - 0.13 12 0.1 0.15 11.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1151) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:295055-295291 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~295055-295291 DUF3451 PF11933.3 g43959.t1 - 0.1 12.3 0.1 0.1 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3451) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:41705-41917 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~41705-41917 RVT_3 PF13456.1 g25916.t1 - 0.00025 20.7 0 0.00047 19.8 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:71823-73771 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~71823-73771 DUF3584 PF12128.3 g92771.t1 - 0.00036 18 6.1 0.00041 17.8 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:164058-165026 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~164058-165026 AF1Q PF15017.1 g53399.t1 - 0.059 13.2 1.8 0.1 12.4 1.3 1.4 1 0 0 1 1 1 0 Drug resistance and apoptosis regulator | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:237821-238156 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~237821-238156 YecM PF06185.7 g54205.t1 - 0.024 13.8 0 0.027 13.6 0 1.1 1 0 0 1 1 1 0 YecM protein | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:12643-12882 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~12643-12882 DUF4413 PF14372.1 g68902.t1 - 0.12 12.3 0.1 0.7 9.9 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4413) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:81809-82298 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~81809-82298 Bacillus_PapR PF05968.6 g10430.t1 - 0.58 10.2 2.2 26 4.9 0.2 2.5 2 1 0 2 2 2 0 Bacillus PapR protein | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:340386-340838 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~340386-340838 RE_SacI PF09566.5 g89598.t1 - 0.17 10.7 0.3 0.31 9.9 0.1 1.5 2 0 0 2 2 2 0 SacI restriction endonuclease | Ref_seq=scaffold1950_contigs=8, transcript_loc=scaffold1950_contigs=8:171044-171821 Augustus predicted protein sequence Tobacco scaffold1950_contigs=8~171044-171821 GDH_N PF12466.3 g8090.t1 - 0.022 14.7 0.6 0.34 10.9 0 2.8 3 0 0 3 3 3 0 Glutamate dehydrogenase N terminal | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:17909-18459 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~17909-18459 RTTN_N PF14726.1 g46757.t1 - 0.0042 17.6 0.7 0.0065 17 0.5 1.4 1 0 0 1 1 1 1 Rotatin, an armadillo repeat protein, centriole functioning | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:82755-83264 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~82755-83264 CHDCT2 PF08074.6 g68397.t1 - 0.025 14.3 0 0.028 14.1 0 1.1 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:31768-32055 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~31768-32055 QH-AmDH_gamma PF08992.6 g76600.t1 - 0.024 14.3 0.1 8.5 6.2 0 3.7 2 1 2 4 4 4 0 Quinohemoprotein amine dehydrogenase, gamma subunit | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:242825-243409 Augustus predicted protein sequence Tobacco scaffold1616_contigs=7~242825-243409 PapJ PF14855.1 g100359.t1 - 0.0053 16.2 5.9 0.23 10.9 0.7 2.1 1 1 1 2 2 2 2 Pilus-assembly fibrillin subunit, chaperone | Ref_seq=scaffold2188_contigs=14, transcript_loc=scaffold2188_contigs=14:144001-144727 Augustus predicted protein sequence Tobacco scaffold2188_contigs=14~144001-144727 zf-CCHC_4 PF14392.1 g56720.t1 - 0.016 14.9 0.2 0.028 14 0.2 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:721592-721885 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~721592-721885 TFIIH_BTF_p62_N PF08567.6 g54956.t1 - 0.032 13.8 0.1 3.5 7.3 0 2.2 2 0 0 2 2 2 0 TFIIH p62 subunit, N-terminal domain | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:228570-229334 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~228570-229334 Sar8_2 PF03058.9 g31201.t1 - 0.056 13.7 1.2 0.074 13.3 0.8 1.2 1 0 0 1 1 1 0 Sar8.2 family | Ref_seq=scaffold790_contigs=1, transcript_loc=scaffold790_contigs=1:1932-2274 Augustus predicted protein sequence Tobacco scaffold790_contigs=1~1932-2274 HTH_25 PF13413.1 g68837.t1 - 0.025 14.1 0.1 0.044 13.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1482_contigs=3, transcript_loc=scaffold1482_contigs=3:7519-7851 Augustus predicted protein sequence Tobacco scaffold1482_contigs=3~7519-7851 PBP_sp32 PF07222.7 g55710.t1 - 0.14 11.3 3.1 0.3 10.2 2.2 1.6 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:285970-287045 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~285970-287045 TPR_7 PF13176.1 g12266.t1 - 0.12 12.2 0.1 0.24 11.2 0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:423529-425607 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~423529-425607 DUF1985 PF09331.6 g11269.t1 - 0.000000002 37.4 0.2 0.0018 18 0 2.7 2 1 1 3 3 3 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:77055-81660 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~77055-81660 DUF3060 PF11259.3 g27974.t1 - 0.047 13.3 0 8.5 6 0 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3060) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:681057-683148 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~681057-683148 Hep_core_N PF08290.6 g106655.t1 - 2 7.8 7.4 4.3 6.8 5.1 1.6 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:287165-287434 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~287165-287434 DUF3436 PF11918.3 g111800.t1 - 0.00042 20.4 0.1 0.97 9.7 0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF3436) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:238627-239629 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~238627-239629 ATHILA PF03078.10 g24924.t1 - 0.000049 22.1 0 0.000055 21.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:23398-23874 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~23398-23874 Peptidase_C25 PF01364.13 g22476.t1 - 0.047 12.6 0.4 0.048 12.6 0.3 1.1 1 0 0 1 1 1 0 Peptidase family C25 | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:27135-27563 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~27135-27563 RVT_3 PF13456.1 g16745.t1 - 0.032 13.9 0 0.039 13.7 0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:281641-281913 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~281641-281913 YlbE PF14003.1 g125540.t1 - 0.16 12 0.2 2.3 8.3 0.1 2 2 0 0 2 2 2 0 YlbE-like protein | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:18074-18280 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~18074-18280 LRV PF01816.12 g41420.t1 - 2.3 8.6 5.7 3.4 8 0.2 3 3 0 0 3 3 3 0 Leucine rich repeat variant | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:254177-254539 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~254177-254539 CCDC155 PF14662.1 g73964.t1 - 0.036 13.6 0.3 0.049 13.2 0.2 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:289189-290933 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~289189-290933 Trypan_PARP PF05887.6 g85303.t1 - 6.2 6.6 19.8 7.7 6.3 13.7 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:164887-165183 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~164887-165183 CENP-F_leu_zip PF10473.4 g97569.t1 - 0.00019 21.2 1.7 0.00029 20.6 1.2 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2139_contigs=8, transcript_loc=scaffold2139_contigs=8:6761-8720 Augustus predicted protein sequence Tobacco scaffold2139_contigs=8~6761-8720 CDK2AP PF09806.4 g66800.t1 - 0.059 13.6 0.9 0.066 13.4 0.6 1 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:772757-773161 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~772757-773161 MAGP PF05507.6 g82185.t1 - 0.21 11.3 0.8 0.25 11.1 0.5 1.1 1 0 0 1 1 1 0 Microfibril-associated glycoprotein (MAGP) | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:38936-39564 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~38936-39564 PsbP PF01789.11 g51346.t1 - 0.01 15.3 0 0.013 14.9 0 1.1 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:86229-89358 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~86229-89358 ECH_C PF13766.1 g12016.t1 - 0.00034 20.7 0.3 0.00041 20.4 0.2 1.1 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:203246-203551 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~203246-203551 DUF655 PF04919.7 g76157.t1 - 0.068 12.8 0.1 0.076 12.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF655) | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:119897-121054 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~119897-121054 adh_short PF00106.20 g56846.t1 - 0.16 11.8 0 0.35 10.7 0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:1103593-1105318 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~1103593-1105318 QH-AmDH_gamma PF08992.6 g7697.t1 - 0.017 14.8 0.6 1.9 8.2 0 2.2 1 1 1 2 2 2 0 Quinohemoprotein amine dehydrogenase, gamma subunit | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:16831-17432 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~16831-17432 MUG2_C PF08593.5 g129149.t1 - 0.35 11.1 2.6 25 5.1 0 2.3 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold2919_contigs=1, transcript_loc=scaffold2919_contigs=1:15791-16099 Augustus predicted protein sequence Tobacco scaffold2919_contigs=1~15791-16099 DUF2686 PF10887.3 g69406.t1 - 0.13 10.9 0 0.16 10.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2686) | Ref_seq=scaffold1488_contigs=1, transcript_loc=scaffold1488_contigs=1:6894-7397 Augustus predicted protein sequence Tobacco scaffold1488_contigs=1~6894-7397 ATHILA PF03078.10 g41453.t1 - 0.00029 19.5 0 0.00047 18.8 0 1.4 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:350865-351218 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~350865-351218 DUF4596 PF15363.1 g30141.t1 - 1.3 9 7.6 0.8 9.6 0.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4596) | Ref_seq=scaffold769_contigs=2, transcript_loc=scaffold769_contigs=2:31722-31946 Augustus predicted protein sequence Tobacco scaffold769_contigs=2~31722-31946 Whi5 PF08528.6 g41088.t1 - 0.13 11.9 0.3 0.3 10.7 0 1.7 2 0 0 2 2 2 0 Whi5 like | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:652278-652607 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~652278-652607 DUF4131 PF13567.1 g44630.t1 - 0.68 9.3 2.7 0.81 9 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:37953-38690 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~37953-38690 DBD_Tnp_Mut PF03108.10 g24001.t1 - 0.000089 21.9 0 0.00018 20.9 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold657_contigs=4, transcript_loc=scaffold657_contigs=4:32608-36803 Augustus predicted protein sequence Tobacco scaffold657_contigs=4~32608-36803 GerPC PF10737.4 g103880.t1 - 0.0045 16.7 1.1 0.0052 16.5 0.8 1.1 1 0 0 1 1 1 1 Spore germination protein GerPC | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:289989-290688 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~289989-290688 DUF678 PF05077.7 g29017.t1 - 0.009 15.9 0.2 0.018 15 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF678) | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:17321-18966 Augustus predicted protein sequence Tobacco scaffold754_contigs=7~17321-18966 Retrotrans_gag PF03732.12 g96437.t1 - 0.007 16.4 2.4 0.077 13 0.2 2.9 2 1 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold2106_contigs=11, transcript_loc=scaffold2106_contigs=11:36878-38791 Augustus predicted protein sequence Tobacco scaffold2106_contigs=11~36878-38791 PHB_acc_N PF07879.6 g129394.t1 - 0.028 14.1 0.1 0.045 13.4 0 1.2 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain | Ref_seq=scaffold2947_contigs=1, transcript_loc=scaffold2947_contigs=1:7340-7689 Augustus predicted protein sequence Tobacco scaffold2947_contigs=1~7340-7689 Pneumo_att_G PF05539.6 g53328.t1 - 5.1 6.3 12 6.3 6 8.3 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:95284-96126 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~95284-96126 Hamartin PF04388.7 g96356.t1 - 0.029 13 0.4 0.026 13.2 0.3 1.1 1 0 0 1 1 1 0 Hamartin protein | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:1720-4540 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~1720-4540 Daxx PF03344.10 g18177.t1 - 0.0048 15.4 8.9 0.0062 15.1 6.2 1.1 1 0 0 1 1 1 1 Daxx Family | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:33069-33695 Augustus predicted protein sequence Tobacco scaffold547_contigs=4~33069-33695 CENP-B_dimeris PF09026.5 g109273.t1 - 0.12 12.5 1.6 0.21 11.8 1.1 1.3 1 1 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold2492_contigs=9, transcript_loc=scaffold2492_contigs=9:23225-25608 Augustus predicted protein sequence Tobacco scaffold2492_contigs=9~23225-25608 DUF2583 PF10762.4 g53730.t1 - 0.068 13.3 0.5 0.13 12.4 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:195183-195464 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~195183-195464 BDV_P10 PF06515.6 g106295.t1 - 0.041 13.7 0.1 0.053 13.3 0 1.1 1 0 0 1 1 1 0 Borna disease virus P10 protein | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:114097-114541 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~114097-114541 DUF4396 PF14342.1 g100118.t1 - 0.24 11.5 3 0.33 11 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:88497-88805 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~88497-88805 bZIP_2 PF07716.10 g4033.t1 - 0.04 13.7 2 0.11 12.3 1.4 1.7 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:28759-29172 Augustus predicted protein sequence Tobacco scaffold249_contigs=5~28759-29172 CD99L2 PF12301.3 g28100.t1 - 0.14 11.8 1.2 0.15 11.7 0.9 1.1 1 0 0 1 1 1 0 CD99 antigen like protein 2 | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:5095-5340 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~5095-5340 Phage_T4_gp19 PF06841.7 g12387.t1 - 0.047 13.3 0.5 0.06 12.9 0.3 1.2 1 0 0 1 1 1 0 T4-like virus tail tube protein gp19 | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:148643-149077 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~148643-149077 DAP10 PF07213.6 g107303.t1 - 0.02 14.6 0.1 9.5 6 0 2.5 2 0 0 2 2 2 0 DAP10 membrane protein | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1117308-1118359 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1117308-1118359 IFP_35_N PF07334.8 g7835.t1 - 0.047 13.6 0.7 0.11 12.4 0.5 1.6 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:52286-53169 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~52286-53169 V_ATPase_I PF01496.14 g92257.t1 - 0.0016 16.4 2.9 0.0021 16 2 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:151586-154923 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~151586-154923 SPT6_acidic PF14632.1 g31907.t1 - 0.042 13.9 3.8 0.048 13.8 2.6 1.1 1 0 0 1 1 1 0 Acidic N-terminal SPT6 | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:172336-173144 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~172336-173144 CDC45 PF02724.9 g81111.t1 - 0.006 14.6 11.5 0.0063 14.6 8 1.1 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1724_contigs=2, transcript_loc=scaffold1724_contigs=2:20849-21389 Augustus predicted protein sequence Tobacco scaffold1724_contigs=2~20849-21389 bZIP_1 PF00170.16 g61078.t1 - 2.4 8.1 6.7 15 5.6 1.6 2.7 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:1867-2757 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~1867-2757 TMEM247 PF15444.1 g44521.t1 - 0.12 12.2 1.2 0.14 11.9 0.8 1.2 1 0 0 1 1 1 0 Transmembrane protein 247 | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:319066-319626 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~319066-319626 PEX-1N PF09262.6 g311.t1 - 0.074 13.1 0.1 0.095 12.7 0.1 1.2 1 0 0 1 1 1 0 Peroxisome biogenesis factor 1, N-terminal | Ref_seq=scaffold11_contigs=1, transcript_loc=scaffold11_contigs=1:6268-6471 Augustus predicted protein sequence Tobacco scaffold11_contigs=1~6268-6471 PMD PF10536.4 g49355.t1 - 0.000011 24.6 0.1 0.000067 22 0 2 1 1 1 2 2 2 1 Plant mobile domain | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:124845-127793 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~124845-127793 ATHILA PF03078.10 g67408.t1 - 0.0056 15.3 0.1 0.049 12.2 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:227059-227888 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~227059-227888 GLTSCR1 PF15249.1 g4429.t1 - 0.12 12.4 1.2 0.14 12.2 0.8 1.2 1 0 0 1 1 1 0 Glioma tumor suppressor candidate region | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:204523-204768 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~204523-204768 Caps_synth PF05704.7 g15365.t1 - 0.032 13.3 0.1 0.04 13 0.1 1.1 1 0 0 1 1 1 0 Capsular polysaccharide synthesis protein | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:129206-129718 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~129206-129718 ECM11 PF15463.1 g70142.t1 - 0.08 13.2 2.6 0.083 13.1 1.8 1 1 0 0 1 1 1 0 Extracellular mutant protein 11 | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:317969-318286 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~317969-318286 zf-HYPF PF07503.7 g127389.t1 - 1.1 8.7 4.4 6.7 6.2 3 2.2 1 1 0 1 1 1 0 HypF finger | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:49576-50072 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~49576-50072 DASH_Dad2 PF08654.5 g104664.t1 - 0.012 15.5 0.1 0.014 15.3 0.1 1.1 1 0 0 1 1 1 0 DASH complex subunit Dad2 | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:340503-340748 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~340503-340748 Matrilin_ccoil PF10393.4 g130332.t1 - 0.023 14 0 0.043 13.1 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold4068_contigs=1, transcript_loc=scaffold4068_contigs=1:1-1180 Augustus predicted protein sequence Tobacco scaffold4068_contigs=1~1-1180 DUF4642 PF15484.1 g34872.t1 - 0.067 13.1 0.8 0.082 12.8 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4642) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:7591-8025 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~7591-8025 Xylo_C PF12529.3 g20994.t1 - 0.12 11.7 0.2 0.15 11.3 0.2 1.1 1 0 0 1 1 1 0 Xylosyltransferase C terminal | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:212591-215267 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~212591-215267 Phage-tail_3 PF13550.1 g74621.t1 - 0.67 9.7 3.1 3.5 7.3 0.8 2.1 1 1 1 2 2 2 0 Putative phage tail protein | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:12007-12609 Augustus predicted protein sequence Tobacco scaffold1561_contigs=2~12007-12609 Strep_his_triad PF04270.8 g12399.t1 - 0.13 11.9 5.5 0.17 11.6 3.8 1.3 1 1 0 1 1 1 0 Streptococcal histidine triad protein | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:180668-180874 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~180668-180874 UBN2 PF14223.1 g41701.t1 - 0.058 13.1 0 0.15 11.8 0 1.7 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:227741-228034 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~227741-228034 A_thal_3526 PF09713.5 g37737.t1 - 0.098 12.8 0 0.15 12.2 0 1.4 1 0 0 1 1 1 0 Plant protein 1589 of unknown function (A_thal_3526) | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:293171-295918 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~293171-295918 Btz PF09405.5 g45317.t1 - 0.038 14 0.3 0.046 13.7 0.2 1.2 1 0 0 1 1 1 0 CASC3/Barentsz eIF4AIII binding | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:188189-189235 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~188189-189235 ATP-synt_E PF05680.7 g67697.t1 - 3 7.8 9.7 4.7 7.2 6.7 1.4 1 0 0 1 1 1 0 ATP synthase E chain | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:48910-49239 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~48910-49239 Vac_Fusion PF02346.11 g60756.t1 - 0.1 12 0.2 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus fusion protein | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:110269-110481 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~110269-110481 gag-asp_proteas PF13975.1 g59077.t1 - 0.059 13.1 0 1.8 8.4 0 2.1 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:189770-190072 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~189770-190072 Omega-toxin PF06357.6 g75577.t1 - 0.0025 17.3 0.2 0.005 16.3 0.2 1.5 1 0 0 1 1 1 1 Omega-atracotoxin | Ref_seq=scaffold1574_contigs=3, transcript_loc=scaffold1574_contigs=3:8078-8344 Augustus predicted protein sequence Tobacco scaffold1574_contigs=3~8078-8344 DUF1727 PF08353.5 g98380.t1 - 0.035 13.7 0 0.037 13.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1727) | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:40599-41622 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~40599-41622 DUF497 PF04365.8 g130415.t1 - 0.12 12.3 0 0.13 12.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF497) | Ref_seq=scaffold4390_contigs=1, transcript_loc=scaffold4390_contigs=1:571-866 Augustus predicted protein sequence Tobacco scaffold4390_contigs=1~571-866 MCD PF05292.6 g66070.t1 - 0.036 12.7 0 0.06 12 0 1.3 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:264505-265832 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~264505-265832 NAM-associated PF14303.1 g60444.t1 - 0.0032 17.8 1.2 0.0033 17.7 0.8 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:68497-69482 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~68497-69482 Secretin_N_2 PF07655.8 g5718.t1 - 0.16 12.3 6.5 0.25 11.7 4.5 1.3 1 0 0 1 1 1 0 Secretin N-terminal domain | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:303274-305544 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~303274-305544 DUF4219 PF13961.1 g28241.t1 - 0.00015 21 0.1 0.00024 20.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:27814-28355 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~27814-28355 ATG16 PF08614.6 g83733.t1 - 0.027 14.2 0.1 0.03 14.1 0.1 1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:126226-126480 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~126226-126480 PBP_sp32 PF07222.7 g50513.t1 - 0.02 14 1.4 0.026 13.7 1 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:168545-169621 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~168545-169621 zf-CCHC PF00098.18 g3540.t1 - 0.00006 22.7 1 0.000091 22.2 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:120730-121107 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~120730-121107 Avl9 PF09794.4 g29193.t1 - 0.01 14.3 0.2 0.022 13.2 0 1.6 1 1 1 2 2 2 0 Transport protein Avl9 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:260555-262824 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~260555-262824 DUF2890 PF11081.3 g78896.t1 - 0.036 14.1 9.7 0.034 14.1 6.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:1189-2095 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~1189-2095 zf-CCHC PF00098.18 g55618.t1 - 0.00054 19.7 0.8 0.00089 19 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:73542-73919 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~73542-73919 HTH_16 PF12645.2 g89840.t1 - 0.25 11.2 1 0.34 10.8 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:198803-200752 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~198803-200752 YbaB_DNA_bd PF02575.11 g1360.t1 - 0.02 14.7 0.5 0.024 14.5 0.4 1.1 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:48810-49037 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~48810-49037 DUF2492 PF10678.4 g93854.t1 - 0.11 12.5 0 0.11 12.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2492) | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:70335-70559 Augustus predicted protein sequence Tobacco scaffold2033_contigs=2~70335-70559 Tropomyosin PF00261.15 g124223.t1 - 0.014 14.5 0.1 0.016 14.3 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1650649-1651433 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1650649-1651433 DUF2543 PF10820.3 g115196.t1 - 0.068 13.1 0.2 0.14 12.1 0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2543) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:192418-193446 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~192418-193446 PEGSRP PF07623.6 g130368.t1 - 0.14 11.4 1.2 11 5.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1584) | Ref_seq=scaffold4200_contigs=1, transcript_loc=scaffold4200_contigs=1:273-883 Augustus predicted protein sequence Tobacco scaffold4200_contigs=1~273-883 HALZ PF02183.13 g67820.t1 - 0.037 13.7 0.2 0.068 12.8 0.1 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:389793-390086 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~389793-390086 AAA_22 PF13401.1 g46551.t1 - 0.13 12.3 0 0.34 11 0 1.6 2 0 0 2 2 2 0 AAA domain | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:93256-93977 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~93256-93977 DUF1347 PF07079.6 g40007.t1 - 0.074 11.2 0.1 0.088 10.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:180623-181180 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~180623-181180 DUF2786 PF10979.3 g35639.t1 - 0.12 12.1 4.2 0.21 11.3 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2786) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:262369-262623 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~262369-262623 DUF1347 PF07079.6 g97433.t1 - 0.012 13.8 0.1 0.015 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:82641-83093 Augustus predicted protein sequence Tobacco scaffold2136_contigs=4~82641-83093 NMDAR2_C PF10565.4 g27859.t1 - 0.057 12.1 0.9 0.06 12 0.6 1 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:429840-430103 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~429840-430103 DUF4286 PF14114.1 g92570.t1 - 0.15 12.3 1.2 0.38 11 0.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:19491-20143 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~19491-20143 DUF3845 PF12956.2 g17814.t1 - 0.11 11.9 0.5 0.18 11.1 0.3 1.4 1 1 0 1 1 1 0 Domain of Unknown Function with PDB structure | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:279946-280332 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~279946-280332 Tegument_dsDNA PF12818.2 g89483.t1 - 0.033 13 0.5 0.2 10.4 0 1.9 2 0 0 2 2 2 0 dsDNA viral tegument protein | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:26122-26715 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~26122-26715 Doppel PF11466.3 g111084.t1 - 0.045 13.3 1.5 0.084 12.4 1.1 1.6 1 1 0 1 1 1 0 Prion-like protein Doppel | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:39738-39989 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~39738-39989 Dehydrin PF00257.14 g44046.t1 - 0.1 12.9 6.2 0.035 14.4 2.1 1.8 1 1 1 2 2 2 0 Dehydrin | Ref_seq=scaffold1032_contigs=3, transcript_loc=scaffold1032_contigs=3:52078-54266 Augustus predicted protein sequence Tobacco scaffold1032_contigs=3~52078-54266 ATHILA PF03078.10 g124575.t1 - 0.012 14.2 0 0.012 14.2 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:59417-59710 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~59417-59710 DNA_ligase_OB_2 PF14743.1 g51790.t1 - 0.0012 18.4 0 0.84 9.3 0 2.2 1 1 1 2 2 2 2 DNA ligase OB-like domain | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:253059-253400 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~253059-253400 DUF2862 PF11061.3 g46724.t1 - 0.0035 16.9 0.4 3.2 7.5 0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2862) | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:29208-30829 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~29208-30829 Tropomyosin PF00261.15 g72.t1 - 0.0000017 27.3 3.1 0.0000017 27.3 2.1 1.8 2 0 0 2 2 2 1 Tropomyosin | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:36924-37804 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~36924-37804 FUSC PF04632.7 g36390.t1 - 0.034 12.5 0.8 0.036 12.4 0.6 1 1 0 0 1 1 1 0 Fusaric acid resistance protein family | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:44951-47538 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~44951-47538 PetM PF08041.6 g32446.t1 - 7.4 6.1 10.7 8.6 5.9 3.2 2.2 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:160809-161105 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~160809-161105 Fer2_BFD PF04324.10 g94260.t1 - 0.00042 20.2 0.1 0.00057 19.8 0 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:405252-405854 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~405252-405854 Serglycin PF04360.7 g2112.t1 - 0.13 12 0.1 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:17539-17832 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~17539-17832 zf-CCHC PF00098.18 g17077.t1 - 0.000011 25 1 0.000016 24.5 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:408743-409150 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~408743-409150 DUF4290 PF14123.1 g73059.t1 - 0.046 12.9 0 0.065 12.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:159695-160066 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~159695-160066 TCRP1 PF14944.1 g95631.t1 - 0.029 14.3 0.1 0.61 9.9 0 1.9 1 1 1 2 2 2 0 Tongue Cancer Chemotherapy Resistant Protein 1 | Ref_seq=scaffold2064_contigs=3, transcript_loc=scaffold2064_contigs=3:4662-5664 Augustus predicted protein sequence Tobacco scaffold2064_contigs=3~4662-5664 Retrotrans_gag PF03732.12 g122498.t1 - 0.00071 19.6 0.2 0.00071 19.6 0.1 1.6 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:133519-134380 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~133519-134380 DUF4116 PF13475.1 g26332.t1 - 0.023 14.1 0 0.035 13.5 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:101392-101940 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~101392-101940 Myosin_HC-like PF07058.6 g2905.t1 - 1 8.3 10.6 1.2 8.1 7.4 1.1 1 0 0 1 1 1 0 Myosin II heavy chain-like | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:23158-26261 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~23158-26261 Aldolase_2 PF10120.4 g90965.t1 - 0.003 16.9 0.3 0.0033 16.8 0.2 1 1 0 0 1 1 1 1 Putative aldolase | Ref_seq=scaffold1965_contigs=7, transcript_loc=scaffold1965_contigs=7:85028-85342 Augustus predicted protein sequence Tobacco scaffold1965_contigs=7~85028-85342 NCA2 PF08637.5 g14871.t1 - 0.021 13.7 0.2 0.025 13.4 0.1 1.1 1 0 0 1 1 1 0 ATP synthase regulation protein NCA2 | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:134086-134487 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~134086-134487 MRP-L46 PF11788.3 g109549.t1 - 0.052 14.1 0.5 0.057 14 0.3 1.1 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 | Ref_seq=scaffold2511_contigs=22, transcript_loc=scaffold2511_contigs=22:170996-171310 Augustus predicted protein sequence Tobacco scaffold2511_contigs=22~170996-171310 RVT_2 PF07727.9 g1006.t1 - 0.0004 19.4 0.2 0.00051 19 0.1 1.2 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:51360-52398 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~51360-52398 DUF285 PF03382.9 g58667.t1 - 0.011 15.3 0.3 0.012 15.1 0.2 1.2 1 0 0 1 1 1 0 Mycoplasma protein of unknown function, DUF285 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:426090-426383 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~426090-426383 DUF913 PF06025.7 g10879.t1 - 0.1 11.2 0.3 0.13 11 0.2 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:99924-101276 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~99924-101276 CENP-F_leu_zip PF10473.4 g121055.t1 - 0.007 16.2 0.5 0.0097 15.7 0.4 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:287563-287886 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~287563-287886 Retrotrans_gag PF03732.12 g13812.t1 - 0.018 15.1 0 0.031 14.3 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:135622-135942 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~135622-135942 APG6 PF04111.7 g119910.t1 - 0.068 12.2 4.4 0.11 11.4 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:502694-503492 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~502694-503492 LEAP-2 PF07359.6 g37943.t1 - 0.015 14.9 0.8 0.022 14.4 0.6 1.2 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:312278-315919 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~312278-315919 DUF3830 PF12903.2 g74836.t1 - 0.038 13.3 0 0.082 12.2 0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3830) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:176353-176782 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~176353-176782 SOUL PF04832.7 g68300.t1 - 0.024 14.1 0 0.028 13.9 0 1.1 1 0 0 1 1 1 0 SOUL heme-binding protein | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:175468-176561 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~175468-176561 bZIP_1 PF00170.16 g94016.t1 - 0.019 14.9 0.7 0.039 13.8 0.5 1.5 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:418409-418741 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~418409-418741 Prolamin_like PF05617.6 g129409.t1 - 0.0031 17.5 4.7 0.0041 17.2 3.2 1.3 1 0 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold2950_contigs=1, transcript_loc=scaffold2950_contigs=1:14991-15272 Augustus predicted protein sequence Tobacco scaffold2950_contigs=1~14991-15272 DUF1656 PF07869.7 g44487.t1 - 0.026 14.3 0 1.7 8.4 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:218582-220332 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~218582-220332 Ribosomal_L50 PF10501.4 g74250.t1 - 0.06 13.3 0.1 0.072 13 0.1 1.1 1 0 0 1 1 1 0 Ribosomal subunit 39S | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:68608-68832 Augustus predicted protein sequence Tobacco scaffold1551_contigs=3~68608-68832 Orexin PF02072.10 g50070.t1 - 0.25 11.1 5.9 12 5.6 4.1 2.2 1 1 0 1 1 1 0 Prepro-orexin | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:211379-211720 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~211379-211720 Gln-synt_N PF03951.14 g50380.t1 - 0.14 11.7 0.3 4.9 6.7 0 2.8 2 2 1 3 3 3 0 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold1138_contigs=6, transcript_loc=scaffold1138_contigs=6:187759-188373 Augustus predicted protein sequence Tobacco scaffold1138_contigs=6~187759-188373 DUF3945 PF13101.1 g86578.t1 - 0.0085 15.3 0.7 3.2 7 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3945) | Ref_seq=scaffold1851_contigs=29, transcript_loc=scaffold1851_contigs=29:102568-103366 Augustus predicted protein sequence Tobacco scaffold1851_contigs=29~102568-103366 DUF1860 PF08949.5 g56104.t1 - 0.086 12.4 0 0.11 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1860) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:70766-71203 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~70766-71203 zf-CCHC_5 PF14787.1 g106674.t1 - 0.23 11 4.2 0.51 9.8 2.9 1.6 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:343337-344187 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~343337-344187 Complex1_LYR_2 PF13233.1 g41282.t1 - 0.098 13.1 1.6 0.12 12.8 1.1 1.2 1 0 0 1 1 1 0 Complex1_LYR-like | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:29788-30180 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~29788-30180 UPF0731 PF14982.1 g1626.t1 - 0.049 13.5 0.8 0.052 13.4 0.6 1.3 1 1 0 1 1 1 0 UPF0731 family | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:41884-42108 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~41884-42108 TOH_N PF12549.3 g106269.t1 - 0.12 12 1.9 0.22 11.1 0.1 2.2 2 0 0 2 2 2 0 Tyrosine hydroxylase N terminal | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:38083-38454 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~38083-38454 ATHILA PF03078.10 g114763.t1 - 0.00000044 28.8 0.1 0.0000005 28.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:63389-63724 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~63389-63724 dCMP_cyt_deam_2 PF08211.6 g5038.t1 - 0.062 13.3 0.1 0.085 12.8 0.1 1.4 1 1 0 1 1 1 0 Cytidine and deoxycytidylate deaminase zinc-binding region | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:191157-191690 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~191157-191690 Hexapep PF00132.19 g42863.t1 - 0.15 11.5 0.6 0.62 9.6 0.2 2.1 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:738754-740239 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~738754-740239 PhnI PF05861.7 g33130.t1 - 0.11 10.9 0.1 0.12 10.9 0.1 1 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:488227-489080 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~488227-489080 Pex14_N PF04695.8 g59582.t1 - 0.045 13.8 2 0.066 13.2 0.2 1.8 1 1 1 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:55665-56143 Augustus predicted protein sequence Tobacco scaffold1294_contigs=7~55665-56143 Pyrid_oxidase_2 PF13883.1 g98010.t1 - 0.000094 22.2 0 0.00011 22 0 1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase | Ref_seq=scaffold2148_contigs=3, transcript_loc=scaffold2148_contigs=3:111141-111371 Augustus predicted protein sequence Tobacco scaffold2148_contigs=3~111141-111371 Phage_RpbA PF10789.4 g17256.t1 - 0.01 15.6 1.3 0.014 15.2 0.9 1.3 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:269736-270119 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~269736-270119 PilO PF04350.8 g90573.t1 - 0.05 13.4 0 0.05 13.4 0 1.1 1 0 0 1 1 1 0 Pilus assembly protein, PilO | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:305423-306031 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~305423-306031 GRP PF07172.6 g3242.t1 - 0.014 15.8 0.4 1.4 9.4 0.1 2.1 2 0 0 2 2 2 0 Glycine rich protein family | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:73362-77026 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~73362-77026 Chromo PF00385.19 g19668.t1 - 0.00000032 29.9 0.7 0.00000057 29.1 0.5 1.4 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold571_contigs=4, transcript_loc=scaffold571_contigs=4:81024-81552 Augustus predicted protein sequence Tobacco scaffold571_contigs=4~81024-81552 MRP-S26 PF14943.1 g71329.t1 - 0.0035 16.9 4.8 0.0035 16.9 3.3 1.1 1 0 0 1 1 1 1 Mitochondrial ribosome subunit S26 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:532589-532879 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~532589-532879 DUF508 PF04370.7 g124558.t1 - 0.089 12.4 0.3 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF508) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:9594-9836 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~9594-9836 APC_CDC26 PF10471.4 g5328.t1 - 0.066 13.9 1.7 6.5 7.5 0.1 2.2 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:37891-38505 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~37891-38505 Shugoshin_N PF07558.6 g67340.t1 - 0.061 13 0 0.28 10.9 0 1.8 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:69331-69600 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~69331-69600 Eclosion PF04736.7 g102241.t1 - 0.056 12.8 0 0.45 9.9 0 2 1 1 1 2 2 2 0 Eclosion hormone | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:91595-91912 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~91595-91912 Nif11 PF07862.6 g78014.t1 - 0.024 14.5 0.2 0.055 13.4 0.1 1.8 1 1 0 1 1 1 0 Nitrogen fixation protein of unknown function | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:225256-225477 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~225256-225477 gag_pre-integrs PF13976.1 g28319.t1 - 4.7 6.9 6.7 0.67 9.6 0.5 2.4 3 1 0 3 3 3 0 GAG-pre-integrase domain | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:52429-52650 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~52429-52650 Matrilin_ccoil PF10393.4 g115671.t1 - 0.031 13.6 0 0.056 12.8 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:944670-945197 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~944670-945197 DUF2997 PF11211.3 g47146.t1 - 0.099 12 0.2 0.22 10.9 0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2997) | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:120784-121462 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~120784-121462 PGC7_Stella PF15549.1 g116510.t1 - 0.15 12 1.3 0.22 11.5 0.9 1.2 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:271942-272742 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~271942-272742 RNA_pol_L PF01193.19 g57982.t1 - 0.054 12.6 0 0.066 12.3 0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:37276-37635 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~37276-37635 Haemolytic PF01809.13 g94512.t1 - 0.079 12.5 0.3 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 Haemolytic domain | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:48728-49705 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~48728-49705 GMP_synt_C PF00958.17 g62177.t1 - 0.049 13.3 0 0.061 13 0 1.1 1 0 0 1 1 1 0 GMP synthase C terminal domain | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:119567-121511 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~119567-121511 Vps5 PF09325.5 g54179.t1 - 0.044 13 1.1 0.052 12.7 0.7 1.1 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:78597-79013 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~78597-79013 Ribosomal_L30 PF00327.15 g118194.t1 - 0.083 12.4 0.1 3.4 7.3 0 2.2 2 0 0 2 2 2 0 Ribosomal protein L30p/L7e | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:35359-35923 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~35359-35923 LZ_Tnp_IS66 PF13007.2 g101508.t1 - 0.089 13.4 1.7 0.12 13 1.2 1.3 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:189360-190153 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~189360-190153 DUF2987 PF11205.3 g104877.t1 - 0.09 12.4 0.2 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2987) | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:246110-246670 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~246110-246670 Allatostatin PF05953.7 g49959.t1 - 3.2 8.5 5.1 36 5.2 0 3.4 4 0 0 4 4 4 0 Allatostatin | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:446284-447354 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~446284-447354 IFP_35_N PF07334.8 g65395.t1 - 0.08 12.9 1.9 0.17 11.8 1 1.7 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:176919-177676 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~176919-177676 YscW PF09619.5 g10441.t1 - 0.093 12.4 0.2 0.61 9.8 0 2.2 1 1 1 2 2 2 0 Type III secretion system lipoprotein chaperone (YscW) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:386458-386700 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~386458-386700 Herpes_LMP1 PF05297.6 g21243.t1 - 0.045 12.6 0.1 0.05 12.5 0 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:64118-64432 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~64118-64432 DUF3034 PF11231.3 g9567.t1 - 0.1 11.9 0 0.12 11.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3034) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:36218-36845 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~36218-36845 DUF1985 PF09331.6 g18007.t1 - 0.00000031 30.2 0 0.00000045 29.7 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:237588-238979 Augustus predicted protein sequence Tobacco scaffold540_contigs=6~237588-238979 Daxx PF03344.10 g56568.t1 - 1 7.8 9.4 1.1 7.6 6.5 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:390392-391596 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~390392-391596 Peptidase_C62 PF12380.3 g1940.t1 - 0.11 11.2 0.1 0.14 10.9 0.1 1.1 1 0 0 1 1 1 0 Gill-associated viral 3C-like peptidase | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:45161-45463 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~45161-45463 stn_TNFRSF12A PF12191.3 g111270.t1 - 0.053 13.5 0 0.065 13.2 0 1.1 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:1955-2215 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~1955-2215 zf-CCHC PF00098.18 g70003.t1 - 0.00012 21.8 1.8 0.00012 21.8 1.3 2 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:68065-69796 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~68065-69796 Myc_N PF01056.13 g9686.t1 - 0.0048 16.1 0.7 0.0048 16.1 0.5 1 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:87152-87412 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~87152-87412 ATHILA PF03078.10 g21539.t1 - 0.0057 15.3 0.3 0.0071 14.9 0.2 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold595_contigs=2, transcript_loc=scaffold595_contigs=2:65629-66956 Augustus predicted protein sequence Tobacco scaffold595_contigs=2~65629-66956 HTH_CodY PF08222.6 g78968.t1 - 0.027 13.8 0.1 6.2 6.2 0 2.3 2 0 0 2 2 2 0 CodY helix-turn-helix domain | Ref_seq=scaffold1679_contigs=9, transcript_loc=scaffold1679_contigs=9:30561-31007 Augustus predicted protein sequence Tobacco scaffold1679_contigs=9~30561-31007 Toxin_22 PF08092.6 g37116.t1 - 0.22 11.3 0.1 0.22 11.3 0.1 2.1 3 0 0 3 3 3 0 Magi peptide toxin family | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:183629-184000 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~183629-184000 HSD3 PF15244.1 g39777.t1 - 0.13 11.4 4.5 0.025 13.8 0.8 1.4 2 0 0 2 2 2 0 Hydroxy-steroid dehydrogenase | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:215594-216580 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~215594-216580 Beta_propel PF09826.4 g66851.t1 - 0.053 11.8 0 0.059 11.7 0 1 1 0 0 1 1 1 0 Beta propeller domain | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:118027-118477 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~118027-118477 Pheromone PF08015.6 g92380.t1 - 0.14 13 0 16 6.4 0 2.3 2 0 0 2 2 2 0 Fungal mating-type pheromone | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:441493-441996 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~441493-441996 FlxA PF14282.1 g32561.t1 - 0.015 15.2 0.6 0.019 14.9 0.4 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:364382-364693 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~364382-364693 DUF1852 PF08908.6 g20251.t1 - 0.14 10.8 0 0.42 9.3 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1852) | Ref_seq=scaffold579_contigs=2, transcript_loc=scaffold579_contigs=2:4883-5741 Augustus predicted protein sequence Tobacco scaffold579_contigs=2~4883-5741 T3SS_LEE_assoc PF13327.1 g77217.t1 - 0.042 13.4 0.1 0.054 13 0.1 1.4 1 1 0 1 1 1 0 Type III secretion system subunit | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:135710-136336 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~135710-136336 MA3 PF02847.12 g78052.t1 - 0.088 12.5 0 0.099 12.3 0 1.1 1 0 0 1 1 1 0 MA3 domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:297157-297414 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~297157-297414 SURF2 PF05477.6 g18517.t1 - 0.29 10.2 6 0.3 10.2 4.1 1.1 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:142847-143092 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~142847-143092 QLQ PF08880.6 g5419.t1 - 0.4 10.1 0.2 0.4 10.1 0.1 2.5 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:227474-227725 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~227474-227725 RE_TdeIII PF09520.5 g125989.t1 - 0.017 14.3 0 0.018 14.3 0 1 1 0 0 1 1 1 0 Type II restriction endonuclease, TdeIII | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:22308-23156 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~22308-23156 DGF-1_4 PF11024.3 g12331.t1 - 0.047 14 1 0.056 13.8 0.7 1.1 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 | Ref_seq=scaffold425_contigs=5, transcript_loc=scaffold425_contigs=5:35890-36102 Augustus predicted protein sequence Tobacco scaffold425_contigs=5~35890-36102 DUF4606 PF15379.1 g126912.t1 - 0.89 9.6 4.8 0.43 10.6 1 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4606) | Ref_seq=scaffold2808_contigs=1, transcript_loc=scaffold2808_contigs=1:50023-50819 Augustus predicted protein sequence Tobacco scaffold2808_contigs=1~50023-50819 zf-BED PF02892.10 g39990.t1 - 0.000006 25.9 6.2 0.031 14 0.1 2.8 2 1 0 2 2 2 2 BED zinc finger | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:148583-149466 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~148583-149466 DUF329 PF03884.9 g86680.t1 - 0.098 12.2 0.1 0.14 11.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:182174-182786 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~182174-182786 FH2 PF02181.18 g46792.t1 - 0.048 12.5 0.1 0.1 11.4 0 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:153066-153842 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~153066-153842 DBD_Tnp_Mut PF03108.10 g88863.t1 - 0.000000035 32.9 0 0.000000058 32.1 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:325857-326686 Augustus predicted protein sequence Tobacco scaffold1936_contigs=10~325857-326686 Ubiquitin_2 PF14560.1 g129993.t1 - 0.005 17 0 4.9 7.4 0 2.3 2 0 0 2 2 2 2 Ubiquitin-like domain | Ref_seq=scaffold3305_contigs=1, transcript_loc=scaffold3305_contigs=1:1797-2367 Augustus predicted protein sequence Tobacco scaffold3305_contigs=1~1797-2367 NAM-associated PF14303.1 g58396.t1 - 0.019 15.3 12.1 0.035 14.4 8.4 1.5 1 1 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:382951-383268 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~382951-383268 MelC1 PF06236.6 g102110.t1 - 0.051 13.5 0.3 0.074 13 0.2 1.4 1 1 0 1 1 1 0 Tyrosinase co-factor MelC1 | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:106808-107844 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~106808-107844 RVT_3 PF13456.1 g6851.t1 - 0.00014 21.6 0 0.00017 21.3 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold305_contigs=7, transcript_loc=scaffold305_contigs=7:79120-79533 Augustus predicted protein sequence Tobacco scaffold305_contigs=7~79120-79533 CBFD_NFYB_HMF PF00808.18 g78272.t1 - 0.07 13.2 0.1 18 5.4 0 2.4 2 1 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:150719-151917 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~150719-151917 FH2 PF02181.18 g36965.t1 - 0.059 12.2 0.3 0.12 11.2 0.1 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:7000-7737 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~7000-7737 DUF1635 PF07795.6 g27744.t1 - 0.15 11.4 0 0.21 10.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:219103-222666 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~219103-222666 TPR_7 PF13176.1 g46009.t1 - 0.033 13.9 0 0.056 13.2 0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:303105-303628 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~303105-303628 FAR1 PF03101.10 g54963.t1 - 0.000013 25.6 0 0.000015 25.4 0 1.1 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:247304-247555 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~247304-247555 COPI_C PF06957.6 g77570.t1 - 2.5 6.5 5.6 2.6 6.4 3.9 1 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus | Ref_seq=scaffold1632_contigs=6, transcript_loc=scaffold1632_contigs=6:43946-44301 Augustus predicted protein sequence Tobacco scaffold1632_contigs=6~43946-44301 COX2 PF00116.15 g760.t1 - 0.099 12.4 0.1 0.13 12.1 0 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:94810-96227 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~94810-96227 ATHILA PF03078.10 g56421.t1 - 0.00027 19.6 0.1 0.00036 19.2 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:107249-108262 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~107249-108262 NIF3 PF01784.13 g12205.t1 - 0.093 12.2 0.1 0.12 11.8 0 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:319047-319985 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~319047-319985 PNRC PF15365.1 g81069.t1 - 0.057 13.4 0.5 0.075 13 0.3 1.4 1 1 0 1 1 1 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:162465-163938 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~162465-163938 VGCC_beta4Aa_N PF12052.3 g102801.t1 - 0.018 14.8 0.1 0.04 13.7 0 1.7 1 1 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:105376-105855 Augustus predicted protein sequence Tobacco scaffold2268_contigs=6~105376-105855 CAP_N PF01213.14 g106470.t1 - 0.013 14.8 0.5 0.015 14.5 0.3 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:29936-30587 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~29936-30587 DUF2209 PF09974.4 g97057.t1 - 0.061 13.4 0 0.072 13.1 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2209) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:410069-410344 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~410069-410344 Mito_fiss_reg PF05308.6 g21102.t1 - 0.0083 15.5 2 0.009 15.4 1.4 1.1 1 0 0 1 1 1 1 Mitochondrial fission regulator | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:467351-467593 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~467351-467593 BLVR PF06375.6 g127501.t1 - 0.0012 18.6 6.8 0.0013 18.6 4.7 1.1 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:61272-61983 Augustus predicted protein sequence Tobacco scaffold2827_contigs=1~61272-61983 PMD PF10536.4 g92053.t1 - 0.00000082 28.3 0 0.000001 28 0 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:53128-53598 Augustus predicted protein sequence Tobacco scaffold1982_contigs=6~53128-53598 CDC45 PF02724.9 g130355.t1 - 0.045 11.7 10.7 0.042 11.8 7.4 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold4152_contigs=1, transcript_loc=scaffold4152_contigs=1:419-838 Augustus predicted protein sequence Tobacco scaffold4152_contigs=1~419-838 zf-CCHC PF00098.18 g109146.t1 - 1.5 8.9 3.7 2.2 8.3 2.6 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:121081-121335 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~121081-121335 DUF1985 PF09331.6 g124567.t1 - 0.026 14.3 0 0.038 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:24592-25708 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~24592-25708 RVT_3 PF13456.1 g13152.t1 - 0.0024 17.5 0.3 0.0032 17.1 0.2 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:275545-275781 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~275545-275781 ISG65-75 PF11727.3 g77975.t1 - 0.0024 16.9 0.1 0.0028 16.7 0.1 1 1 0 0 1 1 1 1 Invariant surface glycoprotein | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:133283-135657 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~133283-135657 zf-CCHC_2 PF13696.1 g34702.t1 - 1.6 8.3 6 3 7.4 4.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:108315-111493 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~108315-111493 DUF1281 PF06924.6 g101142.t1 - 0.064 12.6 0 0.081 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:143232-143552 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~143232-143552 Pol_alpha_B_N PF08418.5 g59073.t1 - 0.024 14.1 1.4 0.024 14.2 0.9 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:187386-187823 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~187386-187823 GRP PF07172.6 g51061.t1 - 0.000000029 34 0 0.000000038 33.6 0 1.2 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:298400-299038 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~298400-299038 IFP_35_N PF07334.8 g116195.t1 - 0.0054 16.6 1.5 0.0097 15.8 0.5 1.9 2 0 0 2 2 2 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:94513-94875 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~94513-94875 Tropomyosin_1 PF12718.2 g116694.t1 - 0.015 15.1 0.2 0.021 14.6 0.2 1.2 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:129303-129626 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~129303-129626 Jnk-SapK_ap_N PF09744.4 g81168.t1 - 0.012 15.6 8.2 0.015 15.3 5.7 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:100402-100713 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~100402-100713 LRV_FeS PF05484.6 g28480.t1 - 0.13 11.8 0.7 0.23 11 0.5 1.4 1 1 0 1 1 1 0 LRV protein FeS4 cluster | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:196643-196882 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~196643-196882 DUF3432 PF11914.3 g82817.t1 - 0.022 14.7 0.7 0.032 14.2 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3432) | Ref_seq=scaffold1769_contigs=11, transcript_loc=scaffold1769_contigs=11:45424-46097 Augustus predicted protein sequence Tobacco scaffold1769_contigs=11~45424-46097 RNase_H2-Ydr279 PF09468.5 g40513.t1 - 0.25 10.5 3.5 0.28 10.3 2.5 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:41595-41861 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~41595-41861 Clusterin PF01093.12 g14774.t1 - 0.00095 18 0.2 0.0011 17.8 0.2 1.1 1 0 0 1 1 1 1 Clusterin | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:170806-171223 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~170806-171223 Nup88 PF10168.4 g110497.t1 - 0.071 10.9 0 0.073 10.9 0 1.1 1 0 0 1 1 1 0 Nuclear pore component | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:92954-93187 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~92954-93187 Mu-transpos_C PF09299.6 g75431.t1 - 0.11 12.3 0 0.38 10.6 0 1.8 2 0 0 2 2 2 0 Mu transposase, C-terminal | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:389772-390350 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~389772-390350 Anophelin PF10731.4 g44432.t1 - 0.19 11.8 0.6 0.97 9.5 0.1 1.9 2 0 0 2 2 2 0 Thrombin inhibitor from mosquito | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:57756-57956 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~57756-57956 DBD_Tnp_Mut PF03108.10 g24497.t1 - 0.000091 21.9 0.1 0.00018 20.9 0.1 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:84837-85166 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~84837-85166 Borrelia_orfD PF02999.9 g111802.t1 - 0.043 13.9 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 Borrelia orf-D family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:240645-241052 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~240645-241052 Pedibin PF08182.6 g59964.t1 - 0.087 12.3 5 0.12 11.8 0.9 2.7 2 2 0 2 2 2 0 Pedibin/Hym-346 family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:305875-306132 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~305875-306132 Retrotrans_gag PF03732.12 g122036.t1 - 0.028 14.4 0 0.039 14 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:52688-52978 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~52688-52978 IL1 PF00340.14 g122442.t1 - 0.056 12.8 0.2 0.072 12.5 0.1 1.3 1 0 0 1 1 1 0 Interleukin-1 / 18 | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:23384-23692 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~23384-23692 DUF4292 PF14125.1 g118441.t1 - 0.032 13.6 0 0.18 11.1 0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4292) | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:110407-111006 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~110407-111006 Poly_export PF02563.11 g58039.t1 - 0.024 14.3 0 0.032 13.9 0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:197357-198342 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~197357-198342 ArabFuran-catal PF09206.6 g121561.t1 - 0.11 11.4 0 0.11 11.3 0 1.1 1 0 0 1 1 1 0 Alpha-L-arabinofuranosidase B, catalytic | Ref_seq=scaffold2734_contigs=11, transcript_loc=scaffold2734_contigs=11:70124-70481 Augustus predicted protein sequence Tobacco scaffold2734_contigs=11~70124-70481 Voltage_CLC PF00654.15 g113311.t1 - 0.028 13.4 0 0.031 13.2 0 1 1 0 0 1 1 1 0 Voltage gated chloride channel | Ref_seq=scaffold2625_contigs=4, transcript_loc=scaffold2625_contigs=4:47339-47593 Augustus predicted protein sequence Tobacco scaffold2625_contigs=4~47339-47593 YhdB PF14148.1 g115854.t1 - 0.066 12.9 0 0.16 11.7 0 1.6 2 0 0 2 2 2 0 YhdB-like protein | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:96191-98865 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~96191-98865 TMEMspv1-c74-12 PF11044.3 g71855.t1 - 0.12 11.9 0.4 0.21 11.1 0.3 1.4 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:218268-218645 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~218268-218645 DUF2285 PF10074.4 g23827.t1 - 0.038 14.3 0 0.052 13.8 0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:150521-151071 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~150521-151071 zf-CCHC PF00098.18 g8614.t1 - 0.00006 22.7 2.2 0.00011 21.9 1.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:385214-385779 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~385214-385779 Arena_glycoprot PF00798.13 g63486.t1 - 0.018 13.4 1.4 0.019 13.4 1 1.1 1 0 0 1 1 1 0 Arenavirus glycoprotein | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:39720-40406 Augustus predicted protein sequence Tobacco scaffold1375_contigs=5~39720-40406 DUF4219 PF13961.1 g127483.t1 - 0.00025 20.3 0.3 0.00045 19.5 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:15177-16180 Augustus predicted protein sequence Tobacco scaffold2827_contigs=1~15177-16180 Hpt PF01627.18 g99579.t1 - 0.02 14.8 0.1 0.064 13.2 0 1.9 1 1 0 2 2 2 0 Hpt domain | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:27365-28345 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~27365-28345 Cactin_mid PF10312.4 g68321.t1 - 0.05 12.8 0 0.078 12.2 0 1.3 1 1 0 1 1 1 0 Conserved mid region of cactin | Ref_seq=scaffold1473_contigs=6, transcript_loc=scaffold1473_contigs=6:1569-1985 Augustus predicted protein sequence Tobacco scaffold1473_contigs=6~1569-1985 Thiol-ester_cl PF10569.4 g1075.t1 - 0.004 16.3 0.1 0.0082 15.3 0.1 1.6 1 0 0 1 1 1 1 Alpha-macro-globulin thiol-ester bond-forming region | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:246695-248347 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~246695-248347 NTNH_C PF08470.5 g47252.t1 - 0.0021 17.7 0 0.0024 17.5 0 1.1 1 0 0 1 1 1 1 Nontoxic nonhaemagglutinin C-terminal | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:20331-20585 Augustus predicted protein sequence Tobacco scaffold1091_contigs=17~20331-20585 ATHILA PF03078.10 g32730.t1 - 0.00033 19.3 0.1 0.00035 19.2 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:779701-780039 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~779701-780039 DUF488 PF04343.8 g111986.t1 - 0.073 13.4 0 0.11 12.9 0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF488 | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:67583-68257 Augustus predicted protein sequence Tobacco scaffold2599_contigs=27~67583-68257 Vitelline_membr PF10542.4 g99925.t1 - 0.034 13.7 0.6 0.087 12.4 0.4 1.7 1 0 0 1 1 1 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:115880-116218 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~115880-116218 SRP-alpha_N PF04086.8 g32804.t1 - 4.4 6.6 7.4 0.25 10.7 0.3 1.9 1 1 1 2 2 2 0 Signal recognition particle, alpha subunit, N-terminal | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:33933-36543 Augustus predicted protein sequence Tobacco scaffold819_contigs=1~33933-36543 Axin_b-cat_bind PF08833.5 g114362.t1 - 0.11 12.2 0.2 0.11 12.2 0.1 1.7 2 0 0 2 2 2 0 Axin beta-catenin binding domain | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:20142-20396 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~20142-20396 DUF677 PF05055.7 g27504.t1 - 0.049 12.3 0.1 0.049 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) | Ref_seq=scaffold727_contigs=8, transcript_loc=scaffold727_contigs=8:130756-131040 Augustus predicted protein sequence Tobacco scaffold727_contigs=8~130756-131040 CbiM PF01891.11 g129518.t1 - 0.029 13.9 0.5 0.036 13.6 0.3 1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:3984-4184 Augustus predicted protein sequence Tobacco scaffold2972_contigs=1~3984-4184 Med3 PF11593.3 g39142.t1 - 0.033 13.4 7.4 0.13 11.4 0.6 2.1 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:471349-471984 Augustus predicted protein sequence Tobacco scaffold948_contigs=6~471349-471984 DUF3850 PF12961.2 g9530.t1 - 0.0065 16.4 0.1 2.5 8.1 0 2.4 2 1 0 2 2 2 2 Domain of Unknown Function with PDB structure (DUF3850) | Ref_seq=scaffold371_contigs=8, transcript_loc=scaffold371_contigs=8:19045-22374 Augustus predicted protein sequence Tobacco scaffold371_contigs=8~19045-22374 Ribosomal_L31e PF01198.14 g9025.t1 - 0.087 12.5 0.2 0.12 12 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L31e | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:96689-97810 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~96689-97810 DUF4286 PF14114.1 g40660.t1 - 0.057 13.7 0.7 0.37 11 0.5 2 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:234391-234846 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~234391-234846 DIX PF00778.12 g76400.t1 - 0.12 12.1 0 0.17 11.6 0 1.3 1 0 0 1 1 1 0 DIX domain | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:146330-146566 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~146330-146566 PsbL PF02419.12 g7391.t1 - 2.5 7.5 4.4 5.4 6.5 3 1.6 1 0 0 1 1 1 0 PsbL protein | Ref_seq=scaffold313_contigs=6, transcript_loc=scaffold313_contigs=6:90774-91745 Augustus predicted protein sequence Tobacco scaffold313_contigs=6~90774-91745 Phosphoprotein PF00922.12 g82744.t1 - 2.2 7.4 4.7 2.6 7.1 3.3 1.1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:15321-15638 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~15321-15638 CENP-B_dimeris PF09026.5 g91414.t1 - 0.76 10 7.3 1.1 9.5 5.1 1.3 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:130436-131604 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~130436-131604 MTBP_C PF14920.1 g13840.t1 - 0.098 12.1 0.2 0.12 11.8 0.2 1.2 1 0 0 1 1 1 0 MDM2-binding | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:178170-178956 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~178170-178956 zf-CCHC PF00098.18 g64226.t1 - 0.0094 15.8 7.4 0.0094 15.8 5.1 2.5 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:175540-175788 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~175540-175788 CENP-B_dimeris PF09026.5 g95174.t1 - 0.014 15.6 11 0.025 14.8 7.6 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:274691-277701 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~274691-277701 Agenet PF05641.7 g11784.t1 - 9.4 6.4 11 29 4.8 0.9 3.5 3 0 0 3 3 3 0 Agenet domain | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:186259-186984 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~186259-186984 PPR PF01535.15 g90773.t1 - 0.021 14.7 0 3.3 7.9 0 2.5 1 1 1 2 2 2 0 PPR repeat | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:1196295-1198118 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~1196295-1198118 DUF4628 PF15429.1 g108940.t1 - 0.14 11.5 2.6 0.15 11.4 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4628) | Ref_seq=scaffold2458_contigs=3, transcript_loc=scaffold2458_contigs=3:24054-24445 Augustus predicted protein sequence Tobacco scaffold2458_contigs=3~24054-24445 DUF1776 PF08643.5 g17131.t1 - 0.092 11.8 0 0.12 11.5 0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:23151-23480 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~23151-23480 Desmo_N PF06771.6 g70349.t1 - 0.015 15.2 0 0.019 14.9 0 1.1 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:330639-330920 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~330639-330920 IGFBP PF00219.13 g102701.t1 - 0.59 10.7 5.6 5.8 7.5 3.9 2.1 1 1 0 1 1 1 0 Insulin-like growth factor binding protein | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:86562-86786 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~86562-86786 HALZ PF02183.13 g21779.t1 - 0.1 12.3 0.9 0.24 11.1 0.6 1.8 1 1 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:162414-162695 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~162414-162695 CaM-KIIN PF15170.1 g64946.t1 - 0.014 15.3 0.3 5.2 7.1 0 2.4 1 1 1 2 2 2 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:41243-41698 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~41243-41698 OapA PF04225.7 g51823.t1 - 0.02 14.7 0 0.024 14.4 0 1.2 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain | Ref_seq=scaffold1167_contigs=2, transcript_loc=scaffold1167_contigs=2:10606-10866 Augustus predicted protein sequence Tobacco scaffold1167_contigs=2~10606-10866 RNA_pol_Rpc4 PF05132.9 g3828.t1 - 0.25 11.3 3.2 0.29 11.1 2.2 1.1 1 0 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:93719-94015 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~93719-94015 UBN2 PF14223.1 g83694.t1 - 0.00000062 29.2 0.1 0.00000079 28.8 0.1 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:31946-32389 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~31946-32389 DUF3040 PF11239.3 g119769.t1 - 8.7 6.4 7.4 4.8 7.2 3.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:119982-120521 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~119982-120521 EpsG PF14897.1 g102088.t1 - 0.034 13 1.6 0.04 12.8 1.1 1.1 1 0 0 1 1 1 0 EpsG family | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:59531-60071 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~59531-60071 DUF4219 PF13961.1 g62461.t1 - 0.00018 20.8 0.5 0.00026 20.3 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:282051-282410 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~282051-282410 RNA_polI_A34 PF08208.6 g68927.t1 - 0.035 13.7 0.4 0.036 13.7 0.3 1 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:153497-153721 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~153497-153721 DUF678 PF05077.7 g78051.t1 - 0.043 13.7 0.1 0.26 11.2 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF678) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:295311-297049 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~295311-297049 DUF1347 PF07079.6 g64149.t1 - 0.013 13.6 0.1 0.016 13.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:18529-18981 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~18529-18981 YesK PF14150.1 g70608.t1 - 0.0062 16.6 0 0.012 15.7 0 1.4 1 0 0 1 1 1 1 YesK-like protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:621436-623584 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~621436-623584 ATHILA PF03078.10 g479.t1 - 0.000000072 31.4 0 0.000000082 31.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:18497-18775 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~18497-18775 DUF3560 PF12083.3 g116242.t1 - 0.00066 19.7 1.7 0.069 13.1 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3560) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:265703-266585 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~265703-266585 ATHILA PF03078.10 g49173.t1 - 0.0019 16.8 0 0.024 13.2 0 1.8 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:193858-194061 Augustus predicted protein sequence Tobacco scaffold1113_contigs=8~193858-194061 CAP_N PF01213.14 g28712.t1 - 4.9 6.3 6.1 5.5 6.1 4.2 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:99569-99775 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~99569-99775 DUF4201 PF13870.1 g120106.t1 - 0.0037 16.7 4.4 0.051 13 3.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:41876-42640 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~41876-42640 DUF2933 PF11666.3 g38573.t1 - 0.087 12.3 0.1 0.34 10.4 0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2933) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:113560-115727 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~113560-115727 CDC48_2 PF02933.12 g7709.t1 - 0.0078 15.8 0.4 2.4 7.8 0 2.9 3 0 0 3 3 3 2 Cell division protein 48 (CDC48), domain 2 | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:45520-46574 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~45520-46574 Peptidase_S46 PF10459.4 g21202.t1 - 0.047 12.1 0.1 0.047 12.1 0 1.7 2 0 0 2 2 2 0 Peptidase S46 | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:258560-259805 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~258560-259805 Inhibitor_I71 PF12628.2 g2425.t1 - 1.1 8.9 0 1.1 8.9 0 2.3 2 1 0 2 2 2 0 Falstatin, cysteine peptidase inhibitor | Ref_seq=scaffold212_contigs=2, transcript_loc=scaffold212_contigs=2:22466-24006 Augustus predicted protein sequence Tobacco scaffold212_contigs=2~22466-24006 Phage_int_SAM_1 PF02899.12 g56161.t1 - 0.035 14.2 0.1 0.068 13.3 0 1.5 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:167024-167778 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~167024-167778 HC2 PF07382.6 g34049.t1 - 0.0087 15.9 3.6 0.015 15.1 2.5 1.3 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:164335-165067 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~164335-165067 NCA2 PF08637.5 g100134.t1 - 0.067 12 0.1 0.076 11.8 0 1.1 1 0 0 1 1 1 0 ATP synthase regulation protein NCA2 | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:142003-142218 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~142003-142218 UreE_N PF02814.10 g27726.t1 - 0.071 12.6 0 0.11 12 0 1.3 1 0 0 1 1 1 0 UreE urease accessory protein, N-terminal domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:189050-189418 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~189050-189418 Serglycin PF04360.7 g12320.t1 - 0.53 9.9 6.2 0.58 9.8 4.3 1.1 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:530385-530510 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~530385-530510 Cwf_Cwc_15 PF04889.7 g70457.t1 - 0.031 13.9 0.5 0.039 13.6 0.4 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:7336-7647 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~7336-7647 zf-RVT PF13966.1 g110360.t1 - 0.000002 28 0.2 0.0000033 27.3 0.2 1.3 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:474165-475254 Augustus predicted protein sequence Tobacco scaffold2538_contigs=14~474165-475254 NAM-associated PF14303.1 g63988.t1 - 0.014 15.7 2.1 0.017 15.4 1.4 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:75442-75708 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~75442-75708 DUF2127 PF09900.4 g87383.t1 - 0.15 12 0.2 0.9 9.5 0.1 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2127) | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:59693-60007 Augustus predicted protein sequence Tobacco scaffold1877_contigs=4~59693-60007 Nup_retrotrp_bd PF10599.4 g94298.t1 - 0.097 13.3 4.3 0.43 11.2 1.6 2.4 2 0 0 2 2 2 0 Retro-transposon transporting motif | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:531767-533470 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~531767-533470 Rep_fac-A_C PF08646.5 g94833.t1 - 0.0014 18.3 1.6 0.0019 17.9 1.1 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain | Ref_seq=scaffold2047_contigs=22, transcript_loc=scaffold2047_contigs=22:163181-164930 Augustus predicted protein sequence Tobacco scaffold2047_contigs=22~163181-164930 DUF4219 PF13961.1 g46096.t1 - 0.0035 16.7 0 0.0059 16 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:72791-73288 Augustus predicted protein sequence Tobacco scaffold1055_contigs=9~72791-73288 BA14K PF07886.6 g124881.t1 - 0.056 13.1 0.1 0.12 12 0.1 1.6 1 0 0 1 1 1 0 BA14K-like protein | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:114409-114864 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~114409-114864 Mito_fiss_reg PF05308.6 g2890.t1 - 0.31 10.3 2.6 0.42 9.9 1.8 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:214903-215256 Augustus predicted protein sequence Tobacco scaffold219_contigs=6~214903-215256 zf-CCHC_3 PF13917.1 g62925.t1 - 0.016 14.9 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:36710-37732 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~36710-37732 Rotamase_2 PF13145.1 g42013.t1 - 0.47 11 6.3 0.068 13.8 1.4 1.8 3 0 0 3 3 3 0 PPIC-type PPIASE domain | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:40417-41244 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~40417-41244 SLR1-BP PF07333.7 g64579.t1 - 8.2 6.7 10.4 18 5.6 7.2 1.7 1 1 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold1388_contigs=6, transcript_loc=scaffold1388_contigs=6:92659-93012 Augustus predicted protein sequence Tobacco scaffold1388_contigs=6~92659-93012 zf-CCHC PF00098.18 g70443.t1 - 0.00082 19.1 0.7 0.0014 18.4 0.5 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1495_contigs=2, transcript_loc=scaffold1495_contigs=2:28260-28937 Augustus predicted protein sequence Tobacco scaffold1495_contigs=2~28260-28937 HCV_core PF01542.13 g105350.t1 - 0.027 14.8 1.9 0.035 14.5 0.3 1.7 1 1 1 2 2 2 0 Hepatitis C virus core protein | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:444596-444820 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~444596-444820 DUF3136 PF11334.3 g95837.t1 - 0.057 12.8 0.7 3 7.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:62150-62560 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~62150-62560 IclR PF01614.13 g26975.t1 - 0.12 12.1 0.3 0.17 11.5 0.2 1.2 1 0 0 1 1 1 0 Bacterial transcriptional regulator | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:625172-626558 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~625172-626558 efThoc1 PF11957.3 g81001.t1 - 0.014 13.8 0.6 0.015 13.7 0.4 1 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:244932-245135 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~244932-245135 ARID PF01388.16 g124573.t1 - 0.041 13.7 0 0.053 13.3 0 1.1 1 0 0 1 1 1 0 ARID/BRIGHT DNA binding domain | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:57582-58286 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~57582-58286 YfiO PF13525.1 g17115.t1 - 0.008 15.6 0 0.011 15.1 0 1.2 1 0 0 1 1 1 1 Outer membrane lipoprotein | Ref_seq=scaffold527_contigs=2, transcript_loc=scaffold527_contigs=2:48368-50118 Augustus predicted protein sequence Tobacco scaffold527_contigs=2~48368-50118 BTV_NS2 PF04514.7 g40492.t1 - 0.17 10.7 8.3 0.31 9.8 5.8 1.3 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:5699-8271 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~5699-8271 HALZ PF02183.13 g10574.t1 - 0.031 13.9 14.2 0.06 13 0.6 3.8 2 1 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:309261-310307 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~309261-310307 SprT-like PF10263.4 g44400.t1 - 0.11 12.1 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 SprT-like family | Ref_seq=scaffold1036_contigs=2, transcript_loc=scaffold1036_contigs=2:8991-9263 Augustus predicted protein sequence Tobacco scaffold1036_contigs=2~8991-9263 BH4 PF02180.12 g73256.t1 - 0.083 12.4 0 0.15 11.5 0 1.4 1 0 0 1 1 1 0 Bcl-2 homology region 4 | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:81857-82150 Augustus predicted protein sequence Tobacco scaffold1535_contigs=9~81857-82150 EIID-AGA PF03613.9 g116297.t1 - 0.079 11.8 0 0.11 11.4 0 1.1 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:40202-40966 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~40202-40966 RLL PF10036.4 g24206.t1 - 0.26 10.6 4.8 0.33 10.3 3.3 1.1 1 0 0 1 1 1 0 Putative carnitine deficiency-associated protein | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:154539-155182 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~154539-155182 Nup54 PF13874.1 g38924.t1 - 0.037 13.6 4.5 0.031 13.9 1.3 2 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:272731-273318 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~272731-273318 DUF776 PF05604.6 g60298.t1 - 0.00042 20.5 0.4 0.00049 20.3 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF776) | Ref_seq=scaffold1305_contigs=4, transcript_loc=scaffold1305_contigs=4:27603-27884 Augustus predicted protein sequence Tobacco scaffold1305_contigs=4~27603-27884 Transposase_28 PF04195.7 g44974.t1 - 0.00076 18.8 0.8 0.0014 17.9 0.6 1.6 1 1 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:145487-146503 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~145487-146503 SLT_L PF14718.1 g128271.t1 - 0.13 12.1 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Soluble lytic murein transglycosylase L domain | Ref_seq=scaffold2859_contigs=1, transcript_loc=scaffold2859_contigs=1:9376-9612 Augustus predicted protein sequence Tobacco scaffold2859_contigs=1~9376-9612 PMD PF10536.4 g88619.t1 - 0.0077 15.2 0 0.008 15.2 0 1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1932_contigs=3, transcript_loc=scaffold1932_contigs=3:19545-20959 Augustus predicted protein sequence Tobacco scaffold1932_contigs=3~19545-20959 R_equi_Vir PF05526.6 g66159.t1 - 0.097 12.2 0 0.13 11.8 0 1.2 1 0 0 1 1 1 0 Rhodococcus equi virulence-associated protein | Ref_seq=scaffold1437_contigs=6, transcript_loc=scaffold1437_contigs=6:51008-53562 Augustus predicted protein sequence Tobacco scaffold1437_contigs=6~51008-53562 NDUF_C2 PF06374.6 g90817.t1 - 0.11 12.5 0 0.11 12.4 0 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:1408121-1408411 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~1408121-1408411 PRCC PF10253.4 g10836.t1 - 0.11 13.1 0.5 0.14 12.8 0.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold394_contigs=2, transcript_loc=scaffold394_contigs=2:6394-6633 Augustus predicted protein sequence Tobacco scaffold394_contigs=2~6394-6633 FliC PF12445.3 g78672.t1 - 0.029 14.4 0.5 0.033 14.3 0.4 1.1 1 0 0 1 1 1 0 Flagellin protein | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:49959-50351 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~49959-50351 Prefoldin_3 PF13758.1 g128342.t1 - 0.0068 16.1 0.3 0.17 11.6 0.2 2.1 1 1 1 2 2 2 1 Prefoldin subunit | Ref_seq=scaffold2863_contigs=1, transcript_loc=scaffold2863_contigs=1:21746-22198 Augustus predicted protein sequence Tobacco scaffold2863_contigs=1~21746-22198 InaF-motif PF15018.1 g72484.t1 - 1.1 8.7 4.2 2.9 7.3 2.9 1.7 1 1 0 1 1 1 0 TRP-interacting helix | Ref_seq=scaffold1507_contigs=2, transcript_loc=scaffold1507_contigs=2:91814-92152 Augustus predicted protein sequence Tobacco scaffold1507_contigs=2~91814-92152 Vip3A_N PF12495.3 g111801.t1 - 0.13 11.9 1.2 0.19 11.4 0.8 1.5 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:239824-240516 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~239824-240516 DUF4232 PF14016.1 g121032.t1 - 0.11 12.1 0.6 0.15 11.7 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4232) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:242352-242870 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~242352-242870 DUF1672 PF07901.6 g116673.t1 - 0.028 13.4 0.2 0.032 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1672) | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:99559-99924 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~99559-99924 Arch_fla_DE PF04659.8 g45363.t1 - 0.067 13 0 0.083 12.7 0 1.1 1 0 0 1 1 1 0 Archaeal flagella protein | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:307903-308732 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~307903-308732 Homoserine_dh PF00742.14 g110452.t1 - 0.07 12.8 0 2.3 7.8 0 2 1 1 1 2 2 2 0 Homoserine dehydrogenase | Ref_seq=scaffold2547_contigs=8, transcript_loc=scaffold2547_contigs=8:36576-37229 Augustus predicted protein sequence Tobacco scaffold2547_contigs=8~36576-37229 Troponin-I_N PF11636.3 g28986.t1 - 0.017 14.7 2.4 0.017 14.7 1.6 2.2 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:155690-156857 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~155690-156857 ER-remodelling PF14755.1 g13186.t1 - 0.13 12.2 3.2 0.18 11.8 2.2 1.2 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold443_contigs=11, transcript_loc=scaffold443_contigs=11:1-203 Augustus predicted protein sequence Tobacco scaffold443_contigs=11~1-203 Dimerisation PF08100.6 g92865.t1 - 0.0081 15.9 0.1 0.012 15.4 0.1 1.2 1 0 0 1 1 1 1 Dimerisation domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:29119-29319 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~29119-29319 DUF217 PF02697.9 g129930.t1 - 0.054 13.7 1.9 0.07 13.3 1.3 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 | Ref_seq=scaffold3215_contigs=1, transcript_loc=scaffold3215_contigs=1:2065-2304 Augustus predicted protein sequence Tobacco scaffold3215_contigs=1~2065-2304 EBV-NA3 PF05009.7 g102836.t1 - 0.71 9 2.9 0.75 9 2 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold2270_contigs=3, transcript_loc=scaffold2270_contigs=3:55032-58691 Augustus predicted protein sequence Tobacco scaffold2270_contigs=3~55032-58691 TruB_C PF09142.6 g44849.t1 - 0.11 12.1 0.8 1.1 8.9 0.1 2.3 2 1 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:316916-317140 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~316916-317140 Seryl_tRNA_N PF02403.17 g128610.t1 - 0.033 14.2 4.3 0.043 13.8 3 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2878_contigs=1, transcript_loc=scaffold2878_contigs=1:2219-2542 Augustus predicted protein sequence Tobacco scaffold2878_contigs=1~2219-2542 2Fe-2S_Ferredox PF11591.3 g121348.t1 - 0.1 12.2 0.5 2.8 7.6 0 2.4 1 1 1 2 2 2 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:901699-901923 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~901699-901923 EAP30 PF04157.11 g67650.t1 - 0.098 11.7 0.3 0.13 11.4 0.2 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family | Ref_seq=scaffold1453_contigs=3, transcript_loc=scaffold1453_contigs=3:32523-33077 Augustus predicted protein sequence Tobacco scaffold1453_contigs=3~32523-33077 ACCA PF03255.9 g57333.t1 - 0.01 15.3 1.5 0.019 14.5 1 1.4 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:70615-71199 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~70615-71199 GH97_C PF14509.1 g23766.t1 - 0.072 13.1 0.3 0.097 12.7 0.2 1.1 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 C-terminal, oligomerisation | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:21053-21970 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~21053-21970 PHY PF00360.15 g60840.t1 - 0.11 11.5 0 0.15 11.1 0 1.2 1 0 0 1 1 1 0 Phytochrome region | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:288187-288639 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~288187-288639 DUF1569 PF07606.6 g77321.t1 - 0.14 12 0 0.23 11.3 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1569) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:307626-307945 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~307626-307945 Med3 PF11593.3 g119725.t1 - 9.6 5.3 9.4 12 4.9 6.5 1.1 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:21947-22826 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~21947-22826 DUF1824 PF08854.5 g38035.t1 - 0.1 12.1 0.1 0.11 12 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1824) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:70094-70790 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~70094-70790 DUF3485 PF11984.3 g29720.t1 - 0.083 11.9 0 0.093 11.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3485) | Ref_seq=scaffold765_contigs=9, transcript_loc=scaffold765_contigs=9:218594-218890 Augustus predicted protein sequence Tobacco scaffold765_contigs=9~218594-218890 EBV-NA3 PF05009.7 g36670.t1 - 0.094 11.9 1.5 0.093 11.9 1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:215857-216093 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~215857-216093 MHCassoc_trimer PF08831.5 g3475.t1 - 0.97 9.3 3.6 0.35 10.7 0.7 1.6 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:131320-132430 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~131320-132430 DmpG_comm PF07836.6 g44122.t1 - 0.089 12.2 0 0.16 11.4 0 1.4 1 0 0 1 1 1 0 DmpG-like communication domain | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:47405-47983 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~47405-47983 BCS1_N PF08740.6 g99422.t1 - 0.037 13.6 0.5 0.33 10.5 0.4 1.9 1 1 1 2 2 2 0 BCS1 N terminal | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:499169-499654 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~499169-499654 BASP1 PF05466.7 g112988.t1 - 0.34 10.6 8.6 0.48 10.2 5.9 1.1 1 0 0 1 1 1 0 Brain acid soluble protein 1 (BASP1 protein) | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:97292-99491 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~97292-99491 Mit_KHE1 PF10173.4 g66996.t1 - 0.05 13.4 0.1 0.34 10.7 0 1.9 1 1 1 2 2 2 0 Mitochondrial K+-H+ exchange-related | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:316332-318952 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~316332-318952 SAB PF04382.8 g76031.t1 - 0.028 14 1.1 0.036 13.7 0.7 1.4 1 1 0 1 1 1 0 SAB domain | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:58451-58654 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~58451-58654 API5 PF05918.6 g123114.t1 - 0.35 9.3 6.7 0.37 9.2 4.7 1 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:18443-19214 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~18443-19214 TMEM240 PF15207.1 g24777.t1 - 0.034 13.7 0.1 0.042 13.4 0.1 1.1 1 0 0 1 1 1 0 TMEM240 family | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:59458-60311 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~59458-60311 TPR_MLP1_2 PF07926.7 g54721.t1 - 0.013 15.2 0.4 0.018 14.8 0.3 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:158703-159397 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~158703-159397 DBD_Tnp_Mut PF03108.10 g62578.t1 - 0.018 14.5 0 0.037 13.6 0 1.6 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1351_contigs=1, transcript_loc=scaffold1351_contigs=1:123540-123965 Augustus predicted protein sequence Tobacco scaffold1351_contigs=1~123540-123965 RMMBL PF07521.7 g6044.t1 - 0.0024 17.6 0.3 3.2 7.6 0 2.5 2 0 0 2 2 2 2 RNA-metabolising metallo-beta-lactamase | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:6969-7860 Augustus predicted protein sequence Tobacco scaffold291_contigs=11~6969-7860 DUF3627 PF12299.3 g33386.t1 - 0.18 11.8 2.2 0.25 11.4 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3627) | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:163038-163433 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~163038-163433 COPR5 PF15340.1 g14832.t1 - 0.042 14.2 0.1 0.063 13.6 0.1 1.3 1 0 0 1 1 1 0 Cooperator of PRMT5 family | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:13053-14499 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~13053-14499 DUF2791 PF10923.3 g42929.t1 - 0.11 11 0 0.13 10.8 0 1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:892850-893143 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~892850-893143 Herpeto_peptide PF14409.1 g58191.t1 - 0.28 10.9 1.4 0.41 10.4 0 2 3 0 0 3 3 3 0 Ribosomally synthesized peptide in Herpetosiphon | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:226576-226881 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~226576-226881 CAF-1_p150 PF11600.3 g102913.t1 - 0.013 14.9 16.6 0.015 14.6 11.5 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:15188-15902 Augustus predicted protein sequence Tobacco scaffold2272_contigs=16~15188-15902 DUF1880 PF08976.6 g15771.t1 - 0.043 13.9 0.1 0.058 13.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:275490-276729 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~275490-276729 HALZ PF02183.13 g80763.t1 - 0.000006 25.8 6.6 0.0033 17.1 0.8 2.2 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:248274-248564 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~248274-248564 Nse4_C PF08743.5 g39997.t1 - 0.098 12.6 0.1 0.11 12.5 0 1.4 1 1 0 1 1 1 0 Nse4 C-terminal | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:164974-165219 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~164974-165219 Imm38 PF15599.1 g50275.t1 - 0.0061 16 0 2.9 7.4 0 2.2 2 0 0 2 2 2 2 Immunity protein 38 | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:269141-270892 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~269141-270892 DUF4423 PF14394.1 g37729.t1 - 0.024 14.1 0.6 0.032 13.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:285244-285711 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~285244-285711 NYD-SP28_assoc PF14775.1 g63703.t1 - 0.26 11 2 0.33 10.6 1.4 1.2 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:116669-117020 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~116669-117020 FH2 PF02181.18 g42819.t1 - 0.13 11 0.1 0.18 10.6 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:637724-638485 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~637724-638485 Glyco_hydro_43 PF04616.9 g38885.t1 - 0.14 11.2 0 0.14 11.2 0 1 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:179126-179335 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~179126-179335 O-FucT PF10250.4 g46331.t1 - 0.0005 19.2 0 0.00081 18.5 0 1.2 1 0 0 1 1 1 1 GDP-fucose protein O-fucosyltransferase | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:109729-110824 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~109729-110824 Spc97_Spc98 PF04130.8 g35300.t1 - 0.09 11 3.5 1.4 7.1 0.4 2 2 0 0 2 2 2 0 Spc97 / Spc98 family | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:266-1629 Augustus predicted protein sequence Tobacco scaffold866_contigs=9~266-1629 PBP_sp32 PF07222.7 g96530.t1 - 0.098 11.8 5.2 0.13 11.4 3.6 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2111_contigs=2, transcript_loc=scaffold2111_contigs=2:5952-6943 Augustus predicted protein sequence Tobacco scaffold2111_contigs=2~5952-6943 GTP_cyclohydro2 PF00925.15 g107510.t1 - 0.069 12.3 0 0.084 12.1 0 1.1 1 0 0 1 1 1 0 GTP cyclohydrolase II | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:177350-177598 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~177350-177598 Antirestrict PF03230.8 g52166.t1 - 0.073 13 0 0.14 12.1 0 1.4 1 0 0 1 1 1 0 Antirestriction protein | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:594662-596179 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~594662-596179 DUF929 PF06053.6 g2099.t1 - 0.033 13.2 0.4 0.043 12.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF929) | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:175351-176007 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~175351-176007 Sdh_cyt PF01127.17 g105454.t1 - 0.015 15.1 2.1 0.41 10.5 0.3 2.1 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:233173-233620 Augustus predicted protein sequence Tobacco scaffold2355_contigs=18~233173-233620 UBN2_2 PF14227.1 g90151.t1 - 0.0016 18 0.1 0.0021 17.6 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:208653-209111 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~208653-209111 Glyco_hydro_101 PF12905.2 g38229.t1 - 0.11 11.1 0 0.11 11.1 0 1 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:4295-4609 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~4295-4609 Troponin-I_N PF11636.3 g49533.t1 - 1.1 8.9 3 0.83 9.3 0.3 2 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:932132-932821 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~932132-932821 NdhM PF10664.4 g59916.t1 - 0.12 12.2 0 0.16 11.9 0 1.2 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:157494-159116 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~157494-159116 Nucleoplasmin PF03066.10 g58588.t1 - 0.046 13.2 8.4 0.046 13.2 5.8 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:240398-243127 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~240398-243127 Dabb PF07876.7 g31256.t1 - 0.018 15.4 0 0.021 15.2 0 1.1 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:223909-224212 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~223909-224212 zf-CDGSH PF09360.5 g64862.t1 - 0.18 11.6 1.1 0.33 10.8 0.8 1.5 1 1 0 1 1 1 0 Iron-binding zinc finger CDGSH type | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:231374-231722 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~231374-231722 zf-C4_ClpX PF06689.8 g82067.t1 - 0.014 14.8 0.1 0.021 14.3 0 1.3 1 0 0 1 1 1 0 ClpX C4-type zinc finger | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:608489-608767 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~608489-608767 YL1 PF05764.8 g126652.t1 - 0.99 8.9 6.5 1.2 8.7 4.5 1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:87341-87706 Augustus predicted protein sequence Tobacco scaffold2801_contigs=1~87341-87706 bcl-2I13 PF12201.3 g71882.t1 - 0.025 14 0.1 0.36 10.2 0 2 1 1 1 2 2 2 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:12027-12903 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~12027-12903 FAM178 PF14816.1 g29444.t1 - 0.047 12.3 0.1 0.12 11 0.1 1.6 1 1 0 1 1 1 0 Family of unknown function, FAM178 | Ref_seq=scaffold759_contigs=22, transcript_loc=scaffold759_contigs=22:78343-79432 Augustus predicted protein sequence Tobacco scaffold759_contigs=22~78343-79432 ATHILA PF03078.10 g58274.t1 - 0.00017 20.3 0 0.00018 20.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:506406-506723 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~506406-506723 DinI PF06183.8 g108346.t1 - 0.082 12.9 0.1 1.9 8.5 0 2.1 2 0 0 2 2 2 0 DinI-like family | Ref_seq=scaffold2436_contigs=4, transcript_loc=scaffold2436_contigs=4:9825-11646 Augustus predicted protein sequence Tobacco scaffold2436_contigs=4~9825-11646 Jiv90 PF14901.1 g23749.t1 - 0.039 13.9 0.3 0.055 13.4 0.2 1.3 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone | Ref_seq=scaffold652_contigs=1, transcript_loc=scaffold652_contigs=1:8383-9590 Augustus predicted protein sequence Tobacco scaffold652_contigs=1~8383-9590 Receptor_IA-2 PF11548.3 g78924.t1 - 0.0098 15.7 0 3 7.8 0 2.1 1 1 1 2 2 2 2 Protein-tyrosine phosphatase receptor IA-2 | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:38641-39365 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~38641-39365 VGCC_beta4Aa_N PF12052.3 g76134.t1 - 0.038 13.8 1.8 0.043 13.6 0.5 1.6 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:25245-25802 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~25245-25802 DUF4140 PF13600.1 g74876.t1 - 0.0038 17.6 1.1 0.006 17 0.7 1.3 1 0 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:267009-267836 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~267009-267836 MULE PF10551.4 g117774.t1 - 0.0069 16.5 0 1.4 9.1 0 2.1 1 1 1 2 2 2 2 MULE transposase domain | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:69836-70130 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~69836-70130 Fer2_2 PF01799.15 g10371.t1 - 0.11 12.3 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 [2Fe-2S] binding domain | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:206939-207250 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~206939-207250 HXXSHH PF07586.6 g125111.t1 - 0.13 11.1 0.6 0.2 10.5 0.2 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:116024-116467 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~116024-116467 Mis14 PF08641.7 g76674.t1 - 0.022 14.8 1 0.024 14.6 0.7 1.1 1 0 0 1 1 1 0 Kinetochore protein Mis14 like | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:55186-55597 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~55186-55597 Spectrin PF00435.16 g122200.t1 - 0.025 14.8 0.8 0.35 11.1 0.1 2.3 2 0 0 2 2 2 0 Spectrin repeat | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:56044-59092 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~56044-59092 RXT2_N PF08595.6 g35520.t1 - 0.0045 16.7 4.3 0.0066 16.2 3 1.2 1 0 0 1 1 1 1 RXT2-like, N-terminal | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:268689-270589 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~268689-270589 QLQ PF08880.6 g17754.t1 - 0.44 10 0.2 0.44 10 0.1 2.4 2 1 1 3 3 3 0 QLQ | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:98839-99099 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~98839-99099 DUF1985 PF09331.6 g92799.t1 - 0.0002 21.1 0 0.00036 20.3 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:251426-252845 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~251426-252845 UBN2_2 PF14227.1 g25770.t1 - 0.0061 16.1 0.2 0.016 14.7 0 1.8 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:43714-44650 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~43714-44650 MCC-bdg_PDZ PF10506.4 g112403.t1 - 0.018 14.8 2.4 0.03 14.1 1.7 1.4 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:87317-87832 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~87317-87832 ER PF01133.12 g9794.t1 - 0.046 13.4 0.1 0.075 12.7 0.1 1.3 1 0 0 1 1 1 0 Enhancer of rudimentary | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:234969-235546 Augustus predicted protein sequence Tobacco scaffold379_contigs=8~234969-235546 PMG PF05287.7 g50918.t1 - 0.004 16.9 4 0.0044 16.8 2.8 1 1 0 0 1 1 1 1 PMG protein | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:46405-46677 Augustus predicted protein sequence Tobacco scaffold1147_contigs=3~46405-46677 Mito_fiss_reg PF05308.6 g39812.t1 - 0.013 14.8 0 0.017 14.4 0 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:278924-283351 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~278924-283351 Protocadherin PF08374.6 g118061.t1 - 0.35 10.4 3.4 1.2 8.7 0 2 1 1 1 2 2 2 0 Protocadherin | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:77576-77979 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~77576-77979 CoA_binding_3 PF13727.1 g26894.t1 - 0.07 12.9 0.3 0.068 12.9 0.2 1.1 1 0 0 1 1 1 0 CoA-binding domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:481395-481613 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~481395-481613 Chon_Sulph_att PF06566.6 g36927.t1 - 0.027 14.1 9.3 0.035 13.7 6.2 1.4 1 1 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:65722-66438 Augustus predicted protein sequence Tobacco scaffold904_contigs=3~65722-66438 ASFV_L11L PF05293.6 g112454.t1 - 0.12 12.5 0.4 0.14 12.2 0.3 1.2 1 0 0 1 1 1 0 African swine fever virus (ASFV) L11L protein | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:69882-70133 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~69882-70133 3A PF00803.13 g97040.t1 - 0.21 10.6 1.3 0.3 10 0.9 1.2 1 0 0 1 1 1 0 3A/RNA2 movement protein family | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:381361-381831 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~381361-381831 Lipase_bact_N PF12262.3 g17563.t1 - 0.0013 18 0 0.0061 15.8 0 1.8 1 1 1 2 2 2 1 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:171206-172003 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~171206-172003 Lactamase_B_4 PF13691.1 g58965.t1 - 0.018 14.5 0 0.032 13.7 0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:297686-298030 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~297686-298030 Copper-fist PF00649.13 g59605.t1 - 0.14 11.3 0.1 0.2 10.8 0 1.3 1 0 0 1 1 1 0 Copper fist DNA binding domain | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:114518-114868 Augustus predicted protein sequence Tobacco scaffold1294_contigs=7~114518-114868 DUF2238 PF09997.4 g65350.t1 - 0.092 12.1 0 0.1 11.9 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:86585-88145 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~86585-88145 Protocadherin PF08374.6 g52995.t1 - 0.18 11.3 1.2 0.19 11.3 0.8 1 1 0 0 1 1 1 0 Protocadherin | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:348856-349802 Augustus predicted protein sequence Tobacco scaffold1183_contigs=24~348856-349802 Muted PF14942.1 g126384.t1 - 0.0025 17.7 1.6 0.0027 17.5 1.1 1 1 0 0 1 1 1 1 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:93597-93842 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~93597-93842 Pox_RNA_Pol_22 PF05273.8 g88273.t1 - 0.52 9.9 2.5 10 5.7 0.1 2.1 2 0 0 2 2 2 0 Poxvirus RNA polymerase 22 kDa subunit | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:94498-97200 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~94498-97200 MHCassoc_trimer PF08831.5 g68137.t1 - 0.12 12.2 0.6 0.25 11.1 0.4 1.6 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:141467-142165 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~141467-142165 rve PF00665.21 g29775.t1 - 0.017 15.2 0 0.024 14.7 0 1.3 1 1 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:83725-83982 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~83725-83982 Retrotrans_gag PF03732.12 g65645.t1 - 0.0011 19 0 0.0015 18.5 0 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold1422_contigs=2, transcript_loc=scaffold1422_contigs=2:1-574 Augustus predicted protein sequence Tobacco scaffold1422_contigs=2~1-574 Proteasome_A_N PF10584.4 g102990.t1 - 0.085 12.1 0 0.13 11.5 0 1.3 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature | Ref_seq=scaffold2278_contigs=9, transcript_loc=scaffold2278_contigs=9:113889-114595 Augustus predicted protein sequence Tobacco scaffold2278_contigs=9~113889-114595 Wx5_PLAF3D7 PF09688.5 g60110.t1 - 0.0019 18.2 1.7 0.002 18 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (Wx5_PLAF3D7) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:34453-34761 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~34453-34761 L51_S25_CI-B8 PF05047.11 g5842.t1 - 0.039 13.7 0 0.064 13 0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:62634-63072 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~62634-63072 DUF3158 PF11358.3 g24201.t1 - 0.013 14.9 0.1 0.016 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3158) | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:148956-149511 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~148956-149511 DUF4142 PF13628.1 g107798.t1 - 0.012 15.6 1.7 0.015 15.3 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:128279-128881 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~128279-128881 DUF2999 PF11212.3 g3440.t1 - 0.037 14 0 0.037 14 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:58014-58226 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~58014-58226 IN_DBD_C PF00552.16 g29343.t1 - 0.052 13 0.2 0.08 12.3 0.1 1.3 1 0 0 1 1 1 0 Integrase DNA binding domain | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:265998-266315 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~265998-266315 DUF1985 PF09331.6 g34902.t1 - 0.0000028 27.1 0 0.0000032 26.9 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:45168-47175 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~45168-47175 DUF4523 PF15023.1 g63994.t1 - 0.045 13.2 0 0.073 12.5 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4523) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:95911-96372 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~95911-96372 UBN2_2 PF14227.1 g122259.t1 - 0.022 14.3 3.3 0.091 12.3 2.3 1.8 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:7802-8395 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~7802-8395 NMU PF02070.10 g109485.t1 - 0.0046 16.4 0 33 4 0 3.6 3 0 0 3 3 3 0 Neuromedin U | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:95980-97477 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~95980-97477 Ca_hom_mod PF14798.1 g111319.t1 - 0.022 13.7 4.5 0.027 13.4 3.1 1.1 1 0 0 1 1 1 0 Calcium homeostasis modulator | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:94988-95368 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~94988-95368 UBN2 PF14223.1 g93159.t1 - 0.012 15.4 0.2 0.018 14.8 0.1 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:89294-89536 Augustus predicted protein sequence Tobacco scaffold2008_contigs=4~89294-89536 Herpes_pp85 PF04637.7 g8388.t1 - 0.019 13.2 0.1 0.021 13.1 0 1 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:390996-391295 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~390996-391295 Mpp10 PF04006.7 g111921.t1 - 0.56 8.5 9.9 0.58 8.4 6.9 1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:65623-66051 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~65623-66051 Nodulin_late PF07127.6 g87120.t1 - 0.028 14.5 18.6 0.031 14.3 1.1 2.2 2 0 0 2 2 2 0 Late nodulin protein | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:104485-104912 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~104485-104912 Glyco_hydro_39 PF01229.12 g76055.t1 - 0.08 11.3 0 0.098 11 0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:78765-79421 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~78765-79421 Rax2 PF12768.2 g39571.t1 - 0.043 13 0.1 0.049 12.8 0.1 1.1 1 0 0 1 1 1 0 Cortical protein marker for cell polarity | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:95892-96152 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~95892-96152 DUF2187 PF09953.4 g2953.t1 - 0.091 12.5 0.8 0.15 11.7 0.5 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:106470-107592 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~106470-107592 K1377 PF15352.1 g123846.t1 - 0.08 10.8 2.2 0.082 10.8 1.6 1 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:721550-721996 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~721550-721996 fn1 PF00039.13 g29564.t1 - 0.06 13.1 0.7 0.11 12.3 0.5 1.5 1 1 0 1 1 1 0 Fibronectin type I domain | Ref_seq=scaffold761_contigs=1, transcript_loc=scaffold761_contigs=1:16138-16374 Augustus predicted protein sequence Tobacco scaffold761_contigs=1~16138-16374 UPF0242 PF06785.6 g97787.t1 - 0.067 11.8 0.2 0.071 11.7 0.1 1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:168844-169137 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~168844-169137 DUF2265 PF10023.4 g9299.t1 - 0.06 12.4 3.8 0.088 11.9 2.6 1.2 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:119867-121712 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~119867-121712 AAA_13 PF13166.1 g78718.t1 - 0.014 13.8 0.2 0.016 13.7 0.2 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:31535-31867 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~31535-31867 Gag_p12 PF01141.13 g117292.t1 - 0.054 13.6 3.9 0.064 13.3 1.2 2.2 1 1 1 2 2 2 0 Gag polyprotein, inner coat protein p12 | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:71811-72209 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~71811-72209 DUF4164 PF13747.1 g71772.t1 - 0.019 15.1 1.7 0.029 14.4 0.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:82656-83310 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~82656-83310 DCR PF14047.1 g7445.t1 - 0.15 12.3 0.3 0.23 11.7 0.2 1.3 1 0 0 1 1 1 0 Dppa2/4 conserved region | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:81068-82197 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~81068-82197 Prok-E2_C PF14459.1 g69824.t1 - 0.042 13.9 0 0.046 13.7 0 1.1 1 0 0 1 1 1 0 Prokaryotic E2 family C | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:257943-259241 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~257943-259241 HALZ PF02183.13 g44461.t1 - 0.00017 21.2 4.4 0.00017 21.2 3 1.7 2 0 0 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:145349-146096 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~145349-146096 BetR PF08667.5 g31626.t1 - 0.12 12.2 0 0.12 12.2 0 1.1 1 0 0 1 1 1 0 BetR domain | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:355857-356078 Augustus predicted protein sequence Tobacco scaffold797_contigs=11~355857-356078 CENP-I PF07778.6 g84379.t1 - 0.08 11.1 0 0.09 10.9 0 1.1 1 0 0 1 1 1 0 Mis6 | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:68084-68641 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~68084-68641 ATHILA PF03078.10 g62222.t1 - 0.024 13.2 0 0.03 12.9 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:231258-231548 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~231258-231548 YjcZ PF13990.1 g72593.t1 - 0.032 13.3 3.5 1.7 7.7 0.1 2.2 2 0 0 2 2 2 0 YjcZ-like protein | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:124523-125350 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~124523-125350 HrpB7 PF09486.5 g37065.t1 - 0.0082 16 0.4 0.0095 15.8 0.3 1.2 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:9876-10211 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~9876-10211 NapE PF06796.6 g2697.t1 - 0.15 11.3 1.1 0.22 10.8 0.8 1.2 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:115484-115873 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~115484-115873 Keratin_B2 PF01500.12 g12529.t1 - 0.1 12.4 0.7 0.12 12 0.5 1.3 1 1 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:94941-95322 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~94941-95322 MHCassoc_trimer PF08831.5 g30213.t1 - 0.081 12.7 0.6 0.15 11.8 0.4 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:48213-48581 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~48213-48581 OGFr_III PF04680.8 g118409.t1 - 0.00082 19.3 2 2.2 8.5 0 3.4 3 0 0 3 3 3 2 Opioid growth factor receptor repeat | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:646136-646369 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~646136-646369 Transposase_28 PF04195.7 g49222.t1 - 0.025 13.9 0.1 0.025 13.9 0.1 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:72155-72463 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~72155-72463 DUF1985 PF09331.6 g3914.t1 - 1.2E-009 38.1 0 1.2E-009 38.1 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:72381-72755 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~72381-72755 Methyltransf_13 PF08421.6 g100793.t1 - 0.096 12.1 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Putative zinc binding domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:14305-14574 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~14305-14574 DUF3847 PF12958.2 g103677.t1 - 3.2 7.5 8.2 0.57 9.9 2.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:27926-28330 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~27926-28330 DAZAP2 PF11029.3 g111881.t1 - 0.013 15.9 0.1 0.015 15.7 0.1 1.2 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:29531-29818 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~29531-29818 fn3 PF00041.16 g59638.t1 - 0.042 13.9 0 0.074 13.1 0 1.4 1 0 0 1 1 1 0 Fibronectin type III domain | Ref_seq=scaffold1296_contigs=2, transcript_loc=scaffold1296_contigs=2:32742-33032 Augustus predicted protein sequence Tobacco scaffold1296_contigs=2~32742-33032 Rod_cone_degen PF15201.1 g110957.t1 - 0.0069 16.2 0.2 0.019 14.8 0.1 1.8 1 0 0 1 1 1 1 Progressive rod-cone degeneration | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:38783-39310 Augustus predicted protein sequence Tobacco scaffold2571_contigs=16~38783-39310 Rieske PF00355.21 g96378.t1 - 0.088 12.3 0 0.16 11.5 0 1.4 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:59839-63100 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~59839-63100 DUF1985 PF09331.6 g62495.t1 - 0.0000021 27.5 0 0.0000026 27.2 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:71433-72100 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~71433-72100 DUF2786 PF10979.3 g88963.t1 - 0.11 12.2 1.7 0.2 11.3 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2786) | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:314494-314787 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~314494-314787 ig PF00047.20 g47285.t1 - 0.049 13.7 0 0.049 13.7 0 1.1 1 0 0 1 1 1 0 Immunoglobulin domain | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:523-744 Augustus predicted protein sequence Tobacco scaffold1092_contigs=11~523-744 Herpes_US12 PF05363.7 g125532.t1 - 0.11 12.9 0 0.23 12 0 1.5 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:1796-2128 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~1796-2128 DUF4283 PF14111.1 g128891.t1 - 0.0011 18 0 0.0015 17.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2898_contigs=1, transcript_loc=scaffold2898_contigs=1:450-1091 Augustus predicted protein sequence Tobacco scaffold2898_contigs=1~450-1091 HPS3_N PF14761.1 g106884.t1 - 0.021 14.2 0 0.024 14 0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3 | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:99729-100073 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~99729-100073 NAM PF02365.10 g11145.t1 - 0.15 12.2 0 3.3 7.9 0 2 2 0 0 2 2 2 0 No apical meristem (NAM) protein | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:223357-225592 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~223357-225592 UBN2_2 PF14227.1 g85138.t1 - 0.007 15.9 0 0.0082 15.6 0 1.3 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:309456-309920 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~309456-309920 Trypan_PARP PF05887.6 g88750.t1 - 0.29 10.9 12.1 0.32 10.8 8.4 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:34963-35172 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~34963-35172 Baculo_Y142 PF04913.7 g40756.t1 - 0.012 13.9 0 0.013 13.8 0 1.1 1 0 0 1 1 1 0 Baculovirus Y142 protein | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:489481-490008 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~489481-490008 zf-CCHC_6 PF15288.1 g40527.t1 - 0.19 11.4 1.8 12 5.6 0.2 2.6 2 1 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:79505-79867 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~79505-79867 MRP-S33 PF08293.6 g3439.t1 - 0.11 12.5 0 0.13 12.2 0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal subunit S27 | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:57638-57895 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~57638-57895 Imm32 PF15579.1 g78117.t1 - 0.16 11.5 0 0.24 10.9 0 1.2 1 0 0 1 1 1 0 Immunity protein 32 | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:443415-444093 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~443415-444093 HSP90 PF00183.13 g31783.t1 - 0.28 9.5 9 0.33 9.2 6.2 1 1 0 0 1 1 1 0 Hsp90 protein | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:28424-28738 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~28424-28738 DUF1075 PF06388.6 g48727.t1 - 0.017 14.7 3.5 0.12 11.9 2.4 2 1 1 0 1 1 1 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:230308-230649 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~230308-230649 DUF4219 PF13961.1 g92977.t1 - 0.000067 22.1 0.2 0.0001 21.5 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:396752-396964 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~396752-396964 EPO_TPO PF00758.13 g47623.t1 - 0.0016 18 0.1 2.3 7.8 0 2.4 2 0 0 2 2 2 2 Erythropoietin/thrombopoietin | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:363902-364793 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~363902-364793 zf-CCHC_3 PF13917.1 g36999.t1 - 0.00082 19 1.3 0.0013 18.4 0.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:87362-87634 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~87362-87634 Sterile PF03015.14 g51972.t1 - 0.11 12.8 0.1 0.22 11.8 0.1 1.5 1 1 0 1 1 1 0 Male sterility protein | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:73646-74071 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~73646-74071 DUF4337 PF14235.1 g28428.t1 - 0.11 12.3 0.2 0.13 12.1 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:72042-72383 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~72042-72383 TFIID-18kDa PF02269.11 g65107.t1 - 1.9 8.3 5.9 3.6 7.4 4.1 1.6 1 1 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:63164-63517 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~63164-63517 Transposase_28 PF04195.7 g97350.t1 - 0.00058 19.1 0.1 0.00092 18.5 0.1 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:103827-104682 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~103827-104682 PsbT PF01405.12 g17188.t1 - 0.12 11.9 0.1 0.26 10.8 0 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre T protein | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:122044-122448 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~122044-122448 DUF3127 PF11325.3 g129238.t1 - 0.066 13.2 0 0.086 12.8 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3127) | Ref_seq=scaffold2928_contigs=1, transcript_loc=scaffold2928_contigs=1:10319-11401 Augustus predicted protein sequence Tobacco scaffold2928_contigs=1~10319-11401 DUF1272 PF06906.6 g29153.t1 - 0.027 14.3 0.8 0.044 13.6 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:201795-202174 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~201795-202174 zf-met2 PF12907.2 g37336.t1 - 0.003 17.4 0.1 0.0054 16.6 0 1.4 1 0 0 1 1 1 1 Zinc-binding | Ref_seq=scaffold922_contigs=1, transcript_loc=scaffold922_contigs=1:21187-21738 Augustus predicted protein sequence Tobacco scaffold922_contigs=1~21187-21738 DUF746 PF05344.6 g661.t1 - 0.041 13.4 0 0.061 12.8 0 1.3 1 1 0 1 1 1 0 Domain of Unknown Function (DUF746) | Ref_seq=scaffold40_contigs=3, transcript_loc=scaffold40_contigs=3:61719-62018 Augustus predicted protein sequence Tobacco scaffold40_contigs=3~61719-62018 DUF960 PF06124.6 g74461.t1 - 0.018 15.2 1.3 0.02 15.1 0.9 1.1 1 0 0 1 1 1 0 Staphylococcal protein of unknown function (DUF960) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:328201-328413 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~328201-328413 MHCassoc_trimer PF08831.5 g125327.t1 - 0.17 11.7 1 0.33 10.8 0.7 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:40145-40633 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~40145-40633 PAP_fibrillin PF04755.7 g88001.t1 - 0.11 12.2 0.1 0.11 12.1 0 1.1 1 0 0 1 1 1 0 PAP_fibrillin | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:182207-182485 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~182207-182485 DUF4129 PF13559.1 g11679.t1 - 0.12 12.3 0.5 0.53 10.2 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:17609-18409 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~17609-18409 Neisseria_TspB PF05616.8 g96041.t1 - 0.26 9.6 5.9 0.25 9.6 4.1 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:77830-78214 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~77830-78214 GAS PF13851.1 g80341.t1 - 0.045 12.9 2.8 0.048 12.8 1.9 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:97956-98195 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~97956-98195 Retrotrans_gag PF03732.12 g40313.t1 - 0.0029 17.6 0.1 0.0039 17.2 0 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:106105-106590 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~106105-106590 Troponin-I_N PF11636.3 g43336.t1 - 0.38 10.5 5.8 1.2 8.8 4 1.9 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold1014_contigs=6, transcript_loc=scaffold1014_contigs=6:23255-24267 Augustus predicted protein sequence Tobacco scaffold1014_contigs=6~23255-24267 Cor1 PF04803.7 g125962.t1 - 0.13 12 0.3 0.16 11.7 0.2 1.1 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:93822-94118 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~93822-94118 Myc_N PF01056.13 g41171.t1 - 0.25 10.4 2.1 0.26 10.4 1.4 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:825382-825699 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~825382-825699 GRP PF07172.6 g79086.t1 - 0.002 18.5 0 0.002 18.5 0 4.2 2 1 1 3 3 3 1 Glycine rich protein family | Ref_seq=scaffold1685_contigs=26, transcript_loc=scaffold1685_contigs=26:448580-449828 Augustus predicted protein sequence Tobacco scaffold1685_contigs=26~448580-449828 SF-assemblin PF06705.6 g70101.t1 - 0.00097 18.3 7 0.0013 17.9 4.9 1.1 1 0 0 1 1 1 1 SF-assemblin/beta giardin | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:247897-248553 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~247897-248553 Angiomotin_C PF12240.3 g45505.t1 - 0.028 13.9 2.1 0.037 13.5 1.5 1.3 1 1 0 1 1 1 0 Angiomotin C terminal | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:57825-58124 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~57825-58124 WEMBL PF05701.6 g20057.t1 - 0.0048 15.4 1 0.0053 15.2 0.7 1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:21554-21967 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~21554-21967 TGF_beta_GS PF08515.7 g112504.t1 - 0.46 9.8 3.7 12 5.3 0.5 2.3 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:1-163 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~1-163 Humanin PF15040.1 g15270.t1 - 0.066 12.4 0.1 0.15 11.3 0.1 1.6 1 0 0 1 1 1 0 Humanin family | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:30169-30514 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~30169-30514 CCDC50_N PF15295.1 g26527.t1 - 0.059 13.2 0.2 0.073 12.9 0.2 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus | Ref_seq=scaffold716_contigs=3, transcript_loc=scaffold716_contigs=3:39131-39457 Augustus predicted protein sequence Tobacco scaffold716_contigs=3~39131-39457 XhlA PF10779.4 g78674.t1 - 0.084 12.7 0 0.12 12.2 0 1.3 1 0 0 1 1 1 0 Haemolysin XhlA | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:59872-60809 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~59872-60809 DUF4390 PF14334.1 g68755.t1 - 0.016 14.4 0 0.02 14 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4390) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:3513-3986 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~3513-3986 53-BP1_Tudor PF09038.5 g130217.t1 - 0.1 12.4 0 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Tumour suppressor p53-binding protein-1 Tudor | Ref_seq=scaffold3677_contigs=1, transcript_loc=scaffold3677_contigs=1:517-867 Augustus predicted protein sequence Tobacco scaffold3677_contigs=1~517-867 DUF1582 PF07621.6 g129116.t1 - 0.056 13.4 0.1 2.5 8.2 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1582) | Ref_seq=scaffold2917_contigs=1, transcript_loc=scaffold2917_contigs=1:8726-8959 Augustus predicted protein sequence Tobacco scaffold2917_contigs=1~8726-8959 DUF258 PF03193.11 g122375.t1 - 0.029 13.5 0 0.037 13.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:18137-18743 Augustus predicted protein sequence Tobacco scaffold2745_contigs=7~18137-18743 DUF3809 PF12723.2 g125183.t1 - 0.0042 16.9 0.3 1.1 9.1 0 2.5 1 1 2 3 3 3 3 Protein of unknown function (DUF3809) | Ref_seq=scaffold2768_contigs=1, transcript_loc=scaffold2768_contigs=1:143637-143939 Augustus predicted protein sequence Tobacco scaffold2768_contigs=1~143637-143939 RVT_3 PF13456.1 g57595.t1 - 0.000000083 31.9 0 0.0000001 31.5 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:240503-241261 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~240503-241261 Pox_Rap94 PF03294.9 g8340.t1 - 0.089 10.7 0.1 0.09 10.7 0 1 1 0 0 1 1 1 0 RNA polymerase-associated transcription specificity factor, Rap94 | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:233528-233794 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~233528-233794 NOA36 PF06524.7 g101238.t1 - 0.81 8.8 6.8 1.3 8.1 4.7 1.2 1 0 0 1 1 1 0 NOA36 protein | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:75028-77435 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~75028-77435 RFXA_RFXANK_bdg PF15289.1 g69482.t1 - 0.087 13 0.2 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 Regulatory factor X-associated C-terminal binding domain | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:140634-140885 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~140634-140885 Daxx PF03344.10 g72015.t1 - 1.7 7 14.9 1.9 6.8 10.4 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:111581-112704 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~111581-112704 DUF1342 PF07072.6 g72500.t1 - 0.025 14.2 0 0.027 14.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1342) | Ref_seq=scaffold1508_contigs=4, transcript_loc=scaffold1508_contigs=4:35472-35788 Augustus predicted protein sequence Tobacco scaffold1508_contigs=4~35472-35788 Gmad2 PF10648.4 g44299.t1 - 0.019 15.1 0.1 0.028 14.6 0 1.3 1 0 0 1 1 1 0 Immunoglobulin-like domain of bacterial spore germination | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:210351-210740 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~210351-210740 IFP_35_N PF07334.8 g38843.t1 - 0.15 12 2 0.44 10.5 1.4 1.9 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:35726-36721 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~35726-36721 DUF2710 PF10921.3 g97428.t1 - 0.09 12.9 0.1 0.14 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:78219-78799 Augustus predicted protein sequence Tobacco scaffold2136_contigs=4~78219-78799 Nbs1_C PF08599.5 g1202.t1 - 0.27 11.1 0.1 0.27 11.1 0.1 1.7 2 0 0 2 2 2 0 DNA damage repair protein Nbs1 | Ref_seq=scaffold128_contigs=2, transcript_loc=scaffold128_contigs=2:12867-13109 Augustus predicted protein sequence Tobacco scaffold128_contigs=2~12867-13109 Smac_DIABLO PF09057.5 g73858.t1 - 0.15 11.1 0.8 0.18 10.8 0.6 1 1 0 0 1 1 1 0 Second Mitochondria-derived Activator of Caspases | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:69840-71424 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~69840-71424 DBD_Tnp_Mut PF03108.10 g62545.t1 - 2.1E-009 36.8 0.1 3.5E-009 36 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:193737-196878 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~193737-196878 Rep_fac-A_C PF08646.5 g100550.t1 - 0.043 13.5 0.2 0.061 13 0.1 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:180552-181763 Augustus predicted protein sequence Tobacco scaffold2197_contigs=7~180552-181763 ATHILA PF03078.10 g56520.t1 - 0.025 13.1 0 0.076 11.5 0 1.7 1 1 1 2 2 2 0 ATHILA ORF-1 family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:299087-299392 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~299087-299392 DUF3713 PF12506.3 g90129.t1 - 0.022 14.8 0.3 0.027 14.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3713) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:145584-145898 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~145584-145898 CENP-O PF09496.5 g39784.t1 - 0.0045 17.1 0.8 0.0077 16.4 0.6 1.4 1 1 0 1 1 1 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:224588-224902 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~224588-224902 YdjO PF14169.1 g95816.t1 - 0.023 14.1 0.1 0.04 13.3 0.1 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:977-1399 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~977-1399 Nop14 PF04147.7 g110208.t1 - 0.77 7.6 22.3 0.75 7.6 15.4 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:74518-74949 Augustus predicted protein sequence Tobacco scaffold2530_contigs=9~74518-74949 DUF3576 PF12100.3 g24427.t1 - 0.12 12.4 0 0.17 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3576) | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:183527-184426 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~183527-184426 Vps51 PF08700.6 g48871.t1 - 0.052 13.3 0.1 0.07 12.9 0.1 1.2 1 0 0 1 1 1 0 Vps51/Vps67 | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:523620-523901 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~523620-523901 Sds3 PF08598.6 g25900.t1 - 0.026 14 1.5 0.034 13.6 0.9 1.3 1 1 0 1 1 1 0 Sds3-like | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:35927-36989 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~35927-36989 YCII PF03795.9 g115164.t1 - 0.016 15.3 0.5 0.58 10.3 0.4 2.3 1 1 0 1 1 1 0 YCII-related domain | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:118704-118997 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~118704-118997 SymE_toxin PF08845.5 g31982.t1 - 0.03 14.1 0 0.049 13.4 0 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:85313-86582 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~85313-86582 DUF755 PF05501.6 g85063.t1 - 0.44 10.6 5.5 0.48 10.4 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:127688-127897 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~127688-127897 RILP PF11461.3 g127550.t1 - 0.045 13.9 0.7 0.14 12.3 0.5 1.8 1 0 0 1 1 1 0 Rab interacting lysosomal protein | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:27795-28597 Augustus predicted protein sequence Tobacco scaffold2829_contigs=1~27795-28597 Exonuc_X-T_C PF08411.5 g72033.t1 - 0.0062 15.6 0.7 0.009 15 0.5 1.1 1 0 0 1 1 1 1 Exonuclease C-terminal | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:143565-144086 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~143565-144086 Nuc_deoxyrib_tr PF05014.10 g76992.t1 - 0.0023 17.8 0 0.0028 17.4 0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase | Ref_seq=scaffold1624_contigs=2, transcript_loc=scaffold1624_contigs=2:41560-43606 Augustus predicted protein sequence Tobacco scaffold1624_contigs=2~41560-43606 Ependymin PF00811.13 g67810.t1 - 0.028 14.1 0 0.041 13.5 0 1.2 1 0 0 1 1 1 0 Ependymin | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:370362-370724 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~370362-370724 Nnf1 PF03980.9 g46722.t1 - 0.0012 18.7 4.7 0.44 10.5 0.6 2.5 1 1 1 2 2 2 2 Nnf1 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:27018-27647 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~27018-27647 RVT_3 PF13456.1 g60011.t1 - 0.000027 23.8 0.4 0.00033 20.3 0.1 2.1 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:62221-62790 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~62221-62790 Het-C PF07217.6 g47530.t1 - 0.095 10.8 0 0.11 10.6 0 1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:175670-176337 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~175670-176337 DBD_Tnp_Mut PF03108.10 g76548.t1 - 0.00064 19.2 0.1 0.00083 18.8 0.1 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1616_contigs=7, transcript_loc=scaffold1616_contigs=7:33895-34134 Augustus predicted protein sequence Tobacco scaffold1616_contigs=7~33895-34134 Filaggrin PF03516.8 g119664.t1 - 0.17 12.3 0.8 0.17 12.3 0.5 1.6 2 0 0 2 2 2 0 Filaggrin | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:192402-192689 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~192402-192689 HAUS4 PF14735.1 g80845.t1 - 0.013 14.8 1.6 0.015 14.5 1.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:169983-170438 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~169983-170438 Dodecin PF07311.7 g44258.t1 - 0.01 15.8 0.2 0.019 14.9 0.2 1.4 1 0 0 1 1 1 1 Dodecin | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:116665-116880 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~116665-116880 DUF2457 PF10446.4 g84719.t1 - 2.5 6.7 6.9 3.9 6.1 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:207701-208444 Augustus predicted protein sequence Tobacco scaffold1827_contigs=21~207701-208444 Prokineticin PF06607.6 g11689.t1 - 0.1 12.7 0.2 0.16 12.1 0.2 1.6 1 1 0 1 1 1 0 Prokineticin | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:53559-54387 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~53559-54387 Pyridox_oxidase PF01243.15 g62598.t1 - 0.047 13.6 0 0.056 13.4 0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:34689-34964 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~34689-34964 CsrA PF02599.11 g34357.t1 - 0.014 15.1 0.4 6.6 6.5 0 2.3 2 0 0 2 2 2 0 Global regulator protein family | Ref_seq=scaffold852_contigs=5, transcript_loc=scaffold852_contigs=5:420-2889 Augustus predicted protein sequence Tobacco scaffold852_contigs=5~420-2889 SWIM PF04434.12 g89559.t1 - 0.0021 17.5 0.1 0.0088 15.4 0 2 2 0 0 2 2 2 1 SWIM zinc finger | Ref_seq=scaffold1950_contigs=8, transcript_loc=scaffold1950_contigs=8:22901-25350 Augustus predicted protein sequence Tobacco scaffold1950_contigs=8~22901-25350 KCNQC3-Ank-G_bd PF11956.3 g5678.t1 - 0.11 12.4 0.4 0.14 12.2 0.3 1.1 1 0 0 1 1 1 0 Ankyrin-G binding motif of KCNQ2-3 | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:157657-158349 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~157657-158349 ATHILA PF03078.10 g20457.t1 - 0.00001 24.3 0 0.00071 18.2 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:308509-308817 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~308509-308817 Ribosomal_S22 PF08136.6 g59516.t1 - 0.089 12.9 0 0.16 12.1 0 1.4 1 0 0 1 1 1 0 30S ribosomal protein subunit S22 family | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:239600-239935 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~239600-239935 DUF1631 PF07793.6 g96167.t1 - 0.0089 14.2 0 0.01 14 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1631) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:4652-6040 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~4652-6040 PBP1_TM PF14812.1 g130253.t1 - 0.25 11.6 1.4 0.29 11.4 0.9 1.2 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold3781_contigs=1, transcript_loc=scaffold3781_contigs=1:1-259 Augustus predicted protein sequence Tobacco scaffold3781_contigs=1~1-259 MHCassoc_trimer PF08831.5 g57456.t1 - 0.14 12 0.3 0.2 11.5 0.2 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:193890-194177 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~193890-194177 DUF3917 PF13055.1 g63414.t1 - 8.6 6.6 7 12 6.2 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3917) | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:226893-227343 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~226893-227343 DUF3331 PF11811.3 g5178.t1 - 0.027 14 4.3 11 5.6 0.1 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF3331) | Ref_seq=scaffold273_contigs=2, transcript_loc=scaffold273_contigs=2:8614-9507 Augustus predicted protein sequence Tobacco scaffold273_contigs=2~8614-9507 Minor_capsid_3 PF12691.2 g96597.t1 - 0.0028 17.3 0 1.2 8.8 0 2.1 2 0 0 2 2 2 2 Minor capsid protein from bacteriophage | Ref_seq=scaffold2116_contigs=9, transcript_loc=scaffold2116_contigs=9:11760-12632 Augustus predicted protein sequence Tobacco scaffold2116_contigs=9~11760-12632 Carot_N PF09150.5 g31770.t1 - 0.055 13.1 0 0.068 12.8 0 1.1 1 0 0 1 1 1 0 Orange carotenoid protein, N-terminal | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:2458-2739 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~2458-2739 DUF3290 PF11694.3 g47130.t1 - 0.058 13.1 0.3 0.081 12.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:73849-74220 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~73849-74220 RVT_3 PF13456.1 g77397.t1 - 0.0061 16.3 0.1 0.0077 15.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1629_contigs=2, transcript_loc=scaffold1629_contigs=2:155117-155383 Augustus predicted protein sequence Tobacco scaffold1629_contigs=2~155117-155383 DUF755 PF05501.6 g97744.t1 - 0.12 12.4 4 0.17 11.9 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:52852-53304 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~52852-53304 Lectin_legB PF00139.14 g90546.t1 - 0.034 13.5 0.1 0.069 12.5 0 1.6 1 1 0 1 1 1 0 Legume lectin domain | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:166286-166597 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~166286-166597 DUF1830 PF08865.6 g109228.t1 - 0.0027 17.2 0 48 3.6 0 4 4 0 0 4 4 4 3 Domain of unknown function (DUF1830) | Ref_seq=scaffold2486_contigs=8, transcript_loc=scaffold2486_contigs=8:9711-10243 Augustus predicted protein sequence Tobacco scaffold2486_contigs=8~9711-10243 CCDC144C PF14915.1 g7534.t1 - 0.0099 14.8 3.6 0.016 14.1 2.5 1.2 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:302724-304883 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~302724-304883 PID_2 PF14719.1 g18713.t1 - 0.17 11.5 0.1 0.17 11.5 0.1 2.2 2 1 0 2 2 2 0 Phosphotyrosine interaction domain (PTB/PID) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:556852-558031 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~556852-558031 HET-s_218-289 PF11558.3 g19062.t1 - 0.093 12.7 0.1 0.22 11.5 0.1 1.7 1 1 0 1 1 1 0 Het-s 218-289 | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:217698-220888 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~217698-220888 Uds1 PF15456.1 g21028.t1 - 0.2 11.6 7.8 0.23 11.4 5.4 1.1 1 0 0 1 1 1 0 Up-regulated During Septation | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:287649-288005 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~287649-288005 zf-CCHC PF00098.18 g51960.t1 - 0.0027 17.5 0.1 0.0044 16.8 0 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:54400-55421 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~54400-55421 MHCassoc_trimer PF08831.5 g43157.t1 - 0.12 12.2 3.1 0.24 11.2 1.7 2 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:13477-14139 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~13477-14139 DUF1589 PF07628.6 g78424.t1 - 0.024 14.5 0.4 0.03 14.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1589) | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:22663-23613 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~22663-23613 TFIIE-A_C-term PF11521.3 g5823.t1 - 0.058 13.3 0 0.094 12.6 0 1.3 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:43969-44391 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~43969-44391 UBN2 PF14223.1 g122911.t1 - 0.000013 24.9 2.8 0.000095 22.1 0 2.3 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:101052-102488 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~101052-102488 DUF4611 PF15387.1 g29904.t1 - 0.1 12.7 0.1 0.16 12.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:370914-371174 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~370914-371174 Ustilago_mating PF05722.7 g98078.t1 - 0.078 12.2 0 0.091 12 0 1.1 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:5516-5845 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~5516-5845 HSBP1 PF06825.7 g74389.t1 - 0.031 13.8 0.5 0.36 10.4 0.1 2.3 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:117707-118602 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~117707-118602 Mononeg_mRNAcap PF14318.1 g80121.t1 - 0.046 12.7 0.1 0.054 12.5 0.1 1.1 1 0 0 1 1 1 0 Mononegavirales mRNA-capping region V | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:182933-183229 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~182933-183229 P21-Arc PF04062.9 g81941.t1 - 0.1 12.3 0 0.1 12.3 0 1.1 1 0 0 1 1 1 0 ARP2/3 complex ARPC3 (21 kDa) subunit | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:194688-194981 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~194688-194981 Myosin_HC-like PF07058.6 g13558.t1 - 0.007 15.5 2.8 0.0088 15.1 1.9 1.1 1 0 0 1 1 1 1 Myosin II heavy chain-like | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:93603-94580 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~93603-94580 Lsr2 PF11774.3 g26287.t1 - 1.9 8.4 8.6 0.089 12.7 1.9 1.8 2 0 0 2 2 2 0 Lsr2 | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:315988-319157 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~315988-319157 SicP-binding PF09119.5 g84893.t1 - 0.03 13.9 0 0.044 13.4 0 1.2 1 0 0 1 1 1 0 SicP binding | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:42716-43548 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~42716-43548 Period_C PF12114.3 g129601.t1 - 1.7 8.1 7.1 2 7.9 4.9 1.1 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold2997_contigs=1, transcript_loc=scaffold2997_contigs=1:403-732 Augustus predicted protein sequence Tobacco scaffold2997_contigs=1~403-732 CIAPIN1 PF05093.8 g68889.t1 - 0.026 14.6 0.7 0.056 13.5 0.5 1.5 1 0 0 1 1 1 0 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:42898-43731 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~42898-43731 HpaP PF09483.5 g7689.t1 - 0.71 9.7 5.8 0.85 9.5 4 1.2 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold318_contigs=3, transcript_loc=scaffold318_contigs=3:120534-121102 Augustus predicted protein sequence Tobacco scaffold318_contigs=3~120534-121102 NTNH_C PF08470.5 g47254.t1 - 0.0034 17 0 0.0042 16.7 0 1.1 1 0 0 1 1 1 1 Nontoxic nonhaemagglutinin C-terminal | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:21353-21613 Augustus predicted protein sequence Tobacco scaffold1091_contigs=17~21353-21613 Adeno_PV PF03910.8 g19537.t1 - 3.7 6.5 6.9 4.2 6.3 4.8 1 1 0 0 1 1 1 0 Adenovirus minor core protein PV | Ref_seq=scaffold569_contigs=9, transcript_loc=scaffold569_contigs=9:149647-149961 Augustus predicted protein sequence Tobacco scaffold569_contigs=9~149647-149961 PQ-loop PF04193.9 g34564.t1 - 0.0092 15.5 0.6 0.013 15 0.4 1.2 1 0 0 1 1 1 1 PQ loop repeat | Ref_seq=scaffold857_contigs=2, transcript_loc=scaffold857_contigs=2:18305-18691 Augustus predicted protein sequence Tobacco scaffold857_contigs=2~18305-18691 ATHILA PF03078.10 g25921.t1 - 0.0002 20 0 0.00021 20 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:80717-80977 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~80717-80977 DUF4014 PF13198.1 g31400.t1 - 0.093 13.1 0.1 0.15 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:16892-17272 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~16892-17272 bZIP_2 PF07716.10 g47405.t1 - 0.11 12.3 1.6 0.24 11.2 1.1 1.5 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:70769-71463 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~70769-71463 DUF2644 PF10841.3 g82603.t1 - 0.000004 26.7 0.2 0.11 12.5 0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2644) | Ref_seq=scaffold1756_contigs=4, transcript_loc=scaffold1756_contigs=4:62759-63172 Augustus predicted protein sequence Tobacco scaffold1756_contigs=4~62759-63172 NAM-associated PF14303.1 g3715.t1 - 0.045 14 2.9 0.043 14.1 2 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold239_contigs=3, transcript_loc=scaffold239_contigs=3:16087-16290 Augustus predicted protein sequence Tobacco scaffold239_contigs=3~16087-16290 DUF605 PF04652.11 g49515.t1 - 0.44 9.8 5.8 0.49 9.7 4 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:834411-835134 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~834411-835134 Bys1 PF04681.7 g85684.t1 - 0.02 14.6 0.2 0.023 14.4 0.1 1.1 1 0 0 1 1 1 0 Blastomyces yeast-phase-specific protein | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:349937-350203 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~349937-350203 ATHILA PF03078.10 g9918.t1 - 0.000055 21.9 0 0.000055 21.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:342154-342447 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~342154-342447 Pex24p PF06398.6 g42801.t1 - 0.034 12.9 0 0.036 12.8 0 1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:608373-608876 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~608373-608876 PsbP PF01789.11 g14036.t1 - 0.023 14.1 0 0.051 13 0 1.5 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:51838-52728 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~51838-52728 zf-RVT PF13966.1 g41219.t1 - 0.033 14.4 0.2 0.065 13.5 0.1 1.4 1 0 0 1 1 1 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:35683-36991 Augustus predicted protein sequence Tobacco scaffold985_contigs=1~35683-36991 MRP-S24 PF14955.1 g45227.t1 - 0.046 13.5 0.1 0.055 13.3 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S24 | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:104795-106501 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~104795-106501 LRRCT PF01463.19 g60430.t1 - 7.2 7.2 7.7 1.9 8.9 0.9 3.1 3 1 1 4 4 4 0 Leucine rich repeat C-terminal domain | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:115035-115322 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~115035-115322 Gly-rich_Ago1 PF12764.2 g59312.t1 - 0.053 14.1 7.6 1.8 9.2 0.5 2.5 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1288_contigs=4, transcript_loc=scaffold1288_contigs=4:1-3232 Augustus predicted protein sequence Tobacco scaffold1288_contigs=4~1-3232 Methyltransf_13 PF08421.6 g8847.t1 - 0.035 13.5 0.1 0.046 13.2 0 1.2 1 0 0 1 1 1 0 Putative zinc binding domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:342931-343478 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~342931-343478 C9orf72-like PF15019.1 g63166.t1 - 0.1 11.8 0 0.11 11.7 0 1.2 1 0 0 1 1 1 0 C9orf72-like protein family | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:6360-6632 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~6360-6632 DUF1985 PF09331.6 g42877.t1 - 0.048 13.4 0.2 0.17 11.6 0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:784645-785987 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~784645-785987 Fe_hyd_SSU PF02256.12 g45121.t1 - 0.01 15.8 0.5 0.24 11.4 0 2.5 3 0 0 3 3 3 1 Iron hydrogenase small subunit | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:460914-461404 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~460914-461404 ATHILA PF03078.10 g60185.t1 - 0.12 10.9 0 0.12 10.9 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:168643-168900 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~168643-168900 DUF605 PF04652.11 g59232.t1 - 2.6 7.3 6.9 3.1 7 4.8 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:16415-16846 Augustus predicted protein sequence Tobacco scaffold1285_contigs=4~16415-16846 Pox_A6 PF04924.7 g59969.t1 - 0.094 11.5 0 0.15 10.8 0 1.2 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:332857-333714 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~332857-333714 DUF2314 PF10077.4 g50147.t1 - 0.014 15.4 0 0.018 15.1 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:2244-5383 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~2244-5383 TOBE PF03459.12 g77725.t1 - 0.14 12.2 0.1 0.79 9.8 0 2 1 1 1 2 2 2 0 TOBE domain | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:242495-243358 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~242495-243358 ATHILA PF03078.10 g2242.t1 - 0.0017 17 0.2 0.0037 15.9 0.1 1.5 1 1 1 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:59967-60677 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~59967-60677 Nucleoplasmin PF03066.10 g31343.t1 - 0.00046 19.7 0 0.00046 19.7 0 1.2 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold793_contigs=9, transcript_loc=scaffold793_contigs=9:314635-315132 Augustus predicted protein sequence Tobacco scaffold793_contigs=9~314635-315132 Spc42p PF11544.3 g45937.t1 - 0.022 14.6 0.1 0.034 14 0.1 1.3 1 0 0 1 1 1 0 Spindle pole body component Spc42p | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:57813-58426 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~57813-58426 DUF4569 PF15133.1 g79707.t1 - 0.52 9.6 5.3 0.71 9.2 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4569) | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:51599-52403 Augustus predicted protein sequence Tobacco scaffold1701_contigs=25~51599-52403 RE_SacI PF09566.5 g5034.t1 - 0.015 14.2 0.9 0.018 13.9 0.6 1 1 0 0 1 1 1 0 SacI restriction endonuclease | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:177875-178348 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~177875-178348 DegS PF05384.6 g117379.t1 - 0.005 16 3 0.0054 15.9 2.1 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:28281-28583 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~28281-28583 dsrm PF00035.20 g78688.t1 - 0.025 15.1 0.1 0.069 13.7 0.1 1.7 1 0 0 1 1 1 0 Double-stranded RNA binding motif | Ref_seq=scaffold1669_contigs=3, transcript_loc=scaffold1669_contigs=3:4945-5586 Augustus predicted protein sequence Tobacco scaffold1669_contigs=3~4945-5586 MMR1 PF08505.5 g25050.t1 - 0.0091 16 5.1 0.011 15.8 3.6 1.1 1 0 0 1 1 1 1 Mitochondrial Myo2 receptor-related protein | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:45560-46125 Augustus predicted protein sequence Tobacco scaffold686_contigs=3~45560-46125 zf-RVT PF13966.1 g32584.t1 - 0.00017 21.7 0.9 0.00017 21.7 0.6 2.5 3 1 1 4 4 4 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:437562-438417 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~437562-438417 Tap-RNA_bind PF09162.5 g111995.t1 - 0.05 13.1 0 5 6.7 0 2.5 2 1 0 2 2 2 0 Tap, RNA-binding | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:758-1576 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~758-1576 DUF3669 PF12417.3 g49766.t1 - 0.48 10.1 2.7 2.4 7.9 0.8 2.1 1 1 1 2 2 2 0 Zinc finger protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:103138-103464 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~103138-103464 DUF3222 PF11519.3 g127070.t1 - 0.1 12.5 0.3 0.54 10.2 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3222) | Ref_seq=scaffold2813_contigs=1, transcript_loc=scaffold2813_contigs=1:3811-5340 Augustus predicted protein sequence Tobacco scaffold2813_contigs=1~3811-5340 CAF-1_p150 PF11600.3 g116479.t1 - 0.00052 19.4 28.9 0.00052 19.4 20 2.4 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:139953-142067 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~139953-142067 SPX PF03105.14 g127234.t1 - 0.049 13.3 0.2 0.058 13.1 0.2 1 1 0 0 1 1 1 0 SPX domain | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:27345-27725 Augustus predicted protein sequence Tobacco scaffold2817_contigs=1~27345-27725 Hormone_4 PF00220.12 g29819.t1 - 0.1 12.3 0.3 0.19 11.4 0.2 1.4 1 0 0 1 1 1 0 Neurohypophysial hormones, N-terminal Domain | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:183997-184302 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~183997-184302 DUF848 PF05852.6 g46765.t1 - 0.091 12.6 0.2 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:95788-96745 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~95788-96745 DUF3624 PF12292.3 g68873.t1 - 0.066 13.6 0.4 0.1 13 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:4319-4588 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~4319-4588 BRX_N PF13713.1 g23968.t1 - 0.032 13.6 0 0.064 12.7 0 1.5 1 0 0 1 1 1 0 Transcription factor BRX N-terminal domain | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:24017-24307 Augustus predicted protein sequence Tobacco scaffold656_contigs=9~24017-24307 Terpene_synth PF01397.16 g89496.t1 - 0.062 12.6 0.1 0.07 12.5 0.1 1.1 1 0 0 1 1 1 0 Terpene synthase, N-terminal domain | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:75459-75683 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~75459-75683 GcrA PF07750.6 g70613.t1 - 0.12 12.5 0.2 0.19 11.9 0.1 1.4 1 1 0 1 1 1 0 GcrA cell cycle regulator | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:639614-639982 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~639614-639982 GCV_T PF01571.16 g75925.t1 - 0.12 11.7 0 0.15 11.3 0 1.2 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:223692-224066 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~223692-224066 zf-CCHC PF00098.18 g104281.t1 - 0.0041 16.9 0.1 0.0077 16.1 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:372926-374272 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~372926-374272 DUF4208 PF13907.1 g3947.t1 - 0.041 14 0.4 0.068 13.3 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:136917-137288 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~136917-137288 NESP55 PF06390.7 g19792.t1 - 0.03 13.6 0.5 0.03 13.7 0.4 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold573_contigs=5, transcript_loc=scaffold573_contigs=5:53545-54416 Augustus predicted protein sequence Tobacco scaffold573_contigs=5~53545-54416 PolyA_pol_RNAbd PF12627.2 g42843.t1 - 0.0075 15.8 0 0.011 15.2 0 1.3 1 0 0 1 1 1 1 Probable RNA and SrmB- binding site of polymerase A | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:670884-671972 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~670884-671972 RE_SacI PF09566.5 g43635.t1 - 0.18 10.7 0.3 0.19 10.6 0.2 1 1 0 0 1 1 1 0 SacI restriction endonuclease | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:225030-225269 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~225030-225269 Binary_toxB PF03495.9 g49507.t1 - 2.1 6.8 5.1 2.2 6.7 3.5 1 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:787391-787747 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~787391-787747 DUF3689 PF12463.3 g8534.t1 - 0.036 12.8 0.2 0.037 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3689) | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:122656-122883 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~122656-122883 DED PF01335.16 g14830.t1 - 0.073 13.1 0.3 0.11 12.6 0.2 1.2 1 0 0 1 1 1 0 Death effector domain | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:695-955 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~695-955 zf-BED PF02892.10 g80110.t1 - 0.0074 16 0.3 0.014 15.1 0.2 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:160926-162671 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~160926-162671 Nucleoplasmin PF03066.10 g68194.t1 - 0.19 11.2 4.1 0.22 11 2.9 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:334260-334575 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~334260-334575 SlyX PF04102.7 g71687.t1 - 0.027 14.8 1.5 0.034 14.5 1 1.1 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:266512-266724 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~266512-266724 CENP-T PF15511.1 g17606.t1 - 0.013 14.7 1.1 0.014 14.6 0.8 1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T | Ref_seq=scaffold532_contigs=7, transcript_loc=scaffold532_contigs=7:6343-6567 Augustus predicted protein sequence Tobacco scaffold532_contigs=7~6343-6567 Tropomyosin PF00261.15 g41098.t1 - 0.019 14 3.6 0.026 13.6 2.5 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:677550-677948 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~677550-677948 DUF1947 PF09183.5 g69247.t1 - 0.033 13.9 0.1 0.068 12.9 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:59332-59838 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~59332-59838 PROL5-SMR PF15621.1 g116397.t1 - 0.086 13.2 0 0.16 12.4 0 1.4 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:266842-267585 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~266842-267585 zf-CCHC_4 PF14392.1 g90139.t1 - 0.0011 18.5 1.4 0.0017 17.9 1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:177251-177514 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~177251-177514 CAV_VP3 PF04771.7 g111468.t1 - 0.1 12.5 0.9 0.14 12.1 0.6 1.1 1 0 0 1 1 1 0 Chicken anaemia virus VP-3 protein | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:584725-584949 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~584725-584949 Menin PF05053.8 g17221.t1 - 0.039 12.1 7 0.55 8.3 0.2 2 2 0 0 2 2 2 0 Menin | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:193483-195167 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~193483-195167 Fer4_7 PF12838.2 g109977.t1 - 0.023 15 0.1 0.061 13.7 0.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:88984-89442 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~88984-89442 Hydrophobin_2 PF06766.6 g67308.t1 - 0.02 14.5 0.7 2.7 7.7 0 2.2 2 0 0 2 2 2 0 Fungal hydrophobin | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:8525-9171 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~8525-9171 ATHILA PF03078.10 g16853.t1 - 0.0000037 25.8 0 0.0000043 25.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:15826-16191 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~15826-16191 zf-CCHC PF00098.18 g110571.t1 - 0.000096 22.1 1 0.00016 21.4 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:881-1432 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~881-1432 RVT_3 PF13456.1 g128011.t1 - 0.00001 25.1 0 0.000014 24.7 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:46-1667 Augustus predicted protein sequence Tobacco scaffold2846_contigs=1~46-1667 Bcr-Abl_Oligo PF09036.5 g118556.t1 - 0.035 14 0.4 0.36 10.8 0.1 2.2 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:171680-173206 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~171680-173206 Antiterm PF03589.8 g90165.t1 - 0.045 13.8 3.6 0.31 11.1 1.2 2.1 1 1 1 2 2 2 0 Antitermination protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:230669-230965 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~230669-230965 zf-CCHC PF00098.18 g125564.t1 - 0.031 14.1 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:56897-57898 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~56897-57898 Lin-8 PF03353.10 g64119.t1 - 0.11 11.8 0.4 0.11 11.6 0.3 1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:372181-372393 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~372181-372393 HAUS4 PF14735.1 g51587.t1 - 0.072 12.3 0 0.089 12 0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:226615-227028 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~226615-227028 Nuclease_act PF08133.6 g100930.t1 - 0.1 12.1 0.6 0.18 11.3 0 1.6 2 0 0 2 2 2 0 Anticodon nuclease activator family | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:358297-358986 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~358297-358986 Transposase_28 PF04195.7 g58023.t1 - 0.00025 20.3 0.1 0.00028 20.2 0.1 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:148368-148904 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~148368-148904 HTH_32 PF13565.1 g83366.t1 - 1.8 9.4 4.1 4.4 8.1 2.9 1.7 1 1 0 1 1 1 0 Homeodomain-like domain | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:28526-28888 Augustus predicted protein sequence Tobacco scaffold1791_contigs=14~28526-28888 Dna2 PF08696.6 g18374.t1 - 0.072 12.3 0 0.086 12.1 0 1.2 1 0 0 1 1 1 0 DNA replication factor Dna2 | Ref_seq=scaffold553_contigs=7, transcript_loc=scaffold553_contigs=7:32834-33365 Augustus predicted protein sequence Tobacco scaffold553_contigs=7~32834-33365 Somatostatin PF03002.10 g36666.t1 - 0.017 14.7 2.2 0.037 13.6 1.5 1.6 1 0 0 1 1 1 0 Somatostatin/Cortistatin family | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:211236-211800 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~211236-211800 DUF4333 PF14230.1 g71101.t1 - 0.039 13.9 0 0.053 13.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4333) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:34756-35060 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~34756-35060 Disulph_isomer PF06491.6 g662.t1 - 0.0013 18.6 0 0.0013 18.5 0 1.1 1 0 0 1 1 1 1 Disulphide isomerase | Ref_seq=scaffold40_contigs=3, transcript_loc=scaffold40_contigs=3:67044-67286 Augustus predicted protein sequence Tobacco scaffold40_contigs=3~67044-67286 Med4 PF10018.4 g8606.t1 - 0.18 11.1 1.9 3.2 7.1 0.1 2 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:345014-345238 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~345014-345238 Flg_hook PF02120.11 g30569.t1 - 0.092 12.4 0 0.2 11.3 0 1.6 1 1 0 1 1 1 0 Flagellar hook-length control protein FliK | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1184890-1187457 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1184890-1187457 DUF4094 PF13334.1 g3788.t1 - 0.021 15.1 0.1 0.037 14.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:17461-17778 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~17461-17778 DUF2219 PF09982.4 g55722.t1 - 0.022 13.5 3.8 5 5.8 0 3.8 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold1222_contigs=3, transcript_loc=scaffold1222_contigs=3:1086-7159 Augustus predicted protein sequence Tobacco scaffold1222_contigs=3~1086-7159 Luciferase_3H PF10284.4 g42324.t1 - 0.042 13.7 0.6 0.19 11.7 0.1 2 2 0 0 2 2 2 0 Luciferase helical bundle domain | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:58020-58325 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~58020-58325 ATHILA PF03078.10 g34818.t1 - 0.000029 22.8 0.1 0.00003 22.7 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:6577-7041 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~6577-7041 Cep57_CLD_2 PF14197.1 g122947.t1 - 0.11 12.4 1.5 0.24 11.3 1 1.7 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:219073-220733 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~219073-220733 Jnk-SapK_ap_N PF09744.4 g114563.t1 - 0.22 11.5 2.3 0.27 11.2 1.6 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:40577-40879 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~40577-40879 DUF1635 PF07795.6 g28310.t1 - 0.011 15.1 3.8 0.011 15.1 2.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1635) | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:41980-43624 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~41980-43624 DUF4640 PF15480.1 g108062.t1 - 0.11 12 0 0.12 11.8 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4640) | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:108478-108771 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~108478-108771 VID27 PF08553.5 g40020.t1 - 0.026 12.7 1.4 0.028 12.6 1 1 1 0 0 1 1 1 0 VID27 cytoplasmic protein | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:228845-229797 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~228845-229797 Nop14 PF04147.7 g26868.t1 - 0.081 10.8 19.6 0.12 10.2 13.6 1.3 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:432135-433022 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~432135-433022 Adaptin_binding PF10199.4 g7945.t1 - 0.048 13.9 10.4 0.08 13.2 7.2 1.4 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:180480-184281 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~180480-184281 zf-ribbon_3 PF13248.1 g17590.t1 - 0.21 10.8 1.4 0.39 9.9 1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:240025-240771 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~240025-240771 zf-HYPF PF07503.7 g73361.t1 - 3.2 7.2 5.6 1 8.8 0.3 2.4 2 1 0 2 2 2 0 HypF finger | Ref_seq=scaffold1538_contigs=11, transcript_loc=scaffold1538_contigs=11:156197-156684 Augustus predicted protein sequence Tobacco scaffold1538_contigs=11~156197-156684 VPS28 PF03997.7 g25980.t1 - 0.13 11.8 0.1 0.17 11.5 0.1 1.1 1 0 0 1 1 1 0 VPS28 protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:221258-222109 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~221258-222109 DBD_Tnp_Mut PF03108.10 g8194.t1 - 0.00024 20.5 0.7 0.00041 19.8 0.5 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:65925-66500 Augustus predicted protein sequence Tobacco scaffold331_contigs=3~65925-66500 FlxA PF14282.1 g60264.t1 - 0.017 15 1.5 0.017 15 1 1.7 1 1 1 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:57492-57893 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~57492-57893 GvpL_GvpF PF06386.6 g116465.t1 - 0.095 12.2 1.6 0.11 12 1.1 1.1 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:116404-116775 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~116404-116775 SCA7 PF08313.7 g84107.t1 - 0.071 12.7 0.2 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 SCA7, zinc-binding domain | Ref_seq=scaffold1812_contigs=3, transcript_loc=scaffold1812_contigs=3:47165-47981 Augustus predicted protein sequence Tobacco scaffold1812_contigs=3~47165-47981 DUF4611 PF15387.1 g81510.t1 - 0.52 10.4 3 0.58 10.3 1.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:125645-126243 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~125645-126243 YdjO PF14169.1 g40649.t1 - 0.0044 16.4 0.1 0.007 15.7 0.1 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:215704-216329 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~215704-216329 DUF4276 PF14103.1 g3697.t1 - 0.02 14.7 0.1 0.025 14.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) | Ref_seq=scaffold238_contigs=5, transcript_loc=scaffold238_contigs=5:174867-175607 Augustus predicted protein sequence Tobacco scaffold238_contigs=5~174867-175607 COP23 PF14218.1 g86889.t1 - 0.00023 20.7 0.5 0.00048 19.6 0.2 1.5 1 1 1 2 2 2 1 Circadian oscillating protein COP23 | Ref_seq=scaffold1863_contigs=15, transcript_loc=scaffold1863_contigs=15:223067-224684 Augustus predicted protein sequence Tobacco scaffold1863_contigs=15~223067-224684 CAP_N PF01213.14 g29155.t1 - 0.095 11.9 1.9 0.097 11.9 1.3 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:204738-205183 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~204738-205183 DBD_Tnp_Mut PF03108.10 g32260.t1 - 0.00014 21.3 1.2 0.00014 21.3 0.9 1.6 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:36265-37057 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~36265-37057 Albumin_I PF08027.6 g1232.t1 - 0.021 14.5 1.3 0.025 14.2 0.9 1.1 1 0 0 1 1 1 0 Albumin I | Ref_seq=scaffold129_contigs=2, transcript_loc=scaffold129_contigs=2:15030-15278 Augustus predicted protein sequence Tobacco scaffold129_contigs=2~15030-15278 HGTP_anticodon2 PF12745.2 g19107.t1 - 0.041 13 3.5 0.056 12.5 2.4 1.1 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:310637-311951 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~310637-311951 Myc_target_1 PF15179.1 g56707.t1 - 0.035 13.6 6.3 0.043 13.4 4.3 1.1 1 0 0 1 1 1 0 Myc target protein 1 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:700110-700526 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~700110-700526 RVT_3 PF13456.1 g77546.t1 - 0.038 13.7 0.1 0.038 13.7 0.1 1.2 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:317460-317693 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~317460-317693 Ribosomal_60s PF00428.14 g108018.t1 - 0.059 13.7 0.7 0.064 13.6 0.5 1.1 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:122416-122764 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~122416-122764 AUX_IAA PF02309.11 g88257.t1 - 0.089 12.5 0 13 5.4 0 2.2 2 0 0 2 2 2 0 AUX/IAA family | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:57997-59464 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~57997-59464 DASH_Spc19 PF08287.6 g112582.t1 - 0.0036 16.9 0.1 2.7 7.5 0 2.1 1 1 1 2 2 2 2 Spc19 | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:232882-234125 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~232882-234125 UBN2 PF14223.1 g122978.t1 - 0.00022 21 0.2 0.001 18.8 0 2 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:302450-302959 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~302450-302959 DUF2370 PF10176.4 g72532.t1 - 1.1 8.5 3.2 1.6 7.9 2.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2370) | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:59260-59794 Augustus predicted protein sequence Tobacco scaffold1509_contigs=13~59260-59794 DUF2890 PF11081.3 g80658.t1 - 2 8.4 4.4 2.3 8.2 3.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:50596-51280 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~50596-51280 tRNA-synt_1 PF00133.17 g53087.t1 - 0.027 12.4 0 0.028 12.4 0 1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:20968-21210 Augustus predicted protein sequence Tobacco scaffold1184_contigs=2~20968-21210 Ocnus PF05005.10 g12994.t1 - 0.076 12.8 0 0.1 12.4 0 1.1 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:86174-87002 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~86174-87002 Nro1 PF12753.2 g74112.t1 - 0.0013 17.7 0.4 0.0014 17.6 0.2 1 1 0 0 1 1 1 1 Nuclear pore complex subunit Nro1 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:560654-561679 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~560654-561679 CRCB PF02537.10 g77176.t1 - 0.018 14.9 0 0.021 14.6 0 1.2 1 0 0 1 1 1 0 CrcB-like protein | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:52851-54918 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~52851-54918 U-box PF04564.10 g80504.t1 - 0.12 12.3 0 0.15 12 0 1.2 1 0 0 1 1 1 0 U-box domain | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:159348-159722 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~159348-159722 PPO1_KFDV PF12143.3 g6134.t1 - 0.11 12.4 0.1 0.11 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF_B2219) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:109338-109601 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~109338-109601 DUF840 PF05801.6 g116721.t1 - 0.1 12.7 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Lagovirus protein of unknown function (DUF840) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:22331-22990 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~22331-22990 ATHILA PF03078.10 g113047.t1 - 0.00000011 30.8 0 0.00000012 30.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:230587-230820 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~230587-230820 PRCC PF10253.4 g69288.t1 - 0.082 13.5 0.2 0.1 13.2 0.2 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:29852-30073 Augustus predicted protein sequence Tobacco scaffold1485_contigs=2~29852-30073 TOBE PF03459.12 g87687.t1 - 0.44 10.6 2.9 11 6.2 0.2 3 3 1 0 3 3 3 0 TOBE domain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:79988-80632 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~79988-80632 Evr1_Alr PF04777.8 g122147.t1 - 0.098 12.5 0 0.13 12.1 0 1.2 1 0 0 1 1 1 0 Erv1 / Alr family | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:359340-359636 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~359340-359636 HHH_2 PF12826.2 g60177.t1 - 0.022 14.6 0 0.033 14 0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:161940-162374 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~161940-162374 DUF1543 PF07566.7 g29101.t1 - 0.021 14.3 0.1 0.036 13.5 0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1543) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:110129-111208 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~110129-111208 P2X_receptor PF00864.14 g64788.t1 - 0.042 12.5 0.1 0.06 12 0 1.2 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:175502-176263 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~175502-176263 EcoRI PF02963.11 g79875.t1 - 0.068 11.9 0 0.075 11.8 0 1.1 1 0 0 1 1 1 0 Restriction endonuclease EcoRI | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:78571-78858 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~78571-78858 Dec-1 PF04624.9 g31549.t1 - 0.012 15.2 0.2 0.019 14.5 0.1 1.3 1 0 0 1 1 1 0 Dec-1 repeat | Ref_seq=scaffold796_contigs=1, transcript_loc=scaffold796_contigs=1:50105-50323 Augustus predicted protein sequence Tobacco scaffold796_contigs=1~50105-50323 Ail_Lom PF06316.6 g59034.t1 - 0.023 14.2 0.3 0.027 14 0.2 1.1 1 0 0 1 1 1 0 Enterobacterial Ail/Lom protein | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:81101-81409 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~81101-81409 Gag_spuma PF03276.9 g93374.t1 - 1.1 7.5 4.4 1.3 7.2 3 1.1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:163740-165085 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~163740-165085 Perilipin PF03036.11 g116309.t1 - 0.013 14.4 0.2 0.015 14.2 0.1 1.1 1 0 0 1 1 1 0 Perilipin family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:65004-65880 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~65004-65880 CRS1_YhbY PF01985.16 g102931.t1 - 0.049 13.6 0 0.057 13.4 0 1.2 1 0 0 1 1 1 0 CRS1 / YhbY (CRM) domain | Ref_seq=scaffold2273_contigs=2, transcript_loc=scaffold2273_contigs=2:8974-9210 Augustus predicted protein sequence Tobacco scaffold2273_contigs=2~8974-9210 PBP_sp32 PF07222.7 g1328.t1 - 0.0066 15.6 0.5 0.0066 15.6 0.3 1.2 1 0 0 1 1 1 1 Proacrosin binding protein sp32 | Ref_seq=scaffold178_contigs=2, transcript_loc=scaffold178_contigs=2:18307-18681 Augustus predicted protein sequence Tobacco scaffold178_contigs=2~18307-18681 IFP_35_N PF07334.8 g3230.t1 - 0.031 14.2 1.5 0.031 14.2 1 1.9 2 1 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:54167-54556 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~54167-54556 EBV-NA3 PF05009.7 g89551.t1 - 0.3 10.3 2 0.32 10.2 1.4 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:101603-101830 Augustus predicted protein sequence Tobacco scaffold1949_contigs=5~101603-101830 Pex24p PF06398.6 g50261.t1 - 0.062 12 0.1 0.069 11.9 0.1 1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:247220-248145 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~247220-248145 DUF2678 PF10856.3 g128739.t1 - 0.49 10.1 3.2 0.85 9.3 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2678) | Ref_seq=scaffold2884_contigs=1, transcript_loc=scaffold2884_contigs=1:31918-32517 Augustus predicted protein sequence Tobacco scaffold2884_contigs=1~31918-32517 Inhibitor_I29 PF08246.7 g129580.t1 - 0.14 12.4 0 30 4.9 0 3 3 0 0 3 3 3 0 Cathepsin propeptide inhibitor domain (I29) | Ref_seq=scaffold2988_contigs=1, transcript_loc=scaffold2988_contigs=1:3440-3937 Augustus predicted protein sequence Tobacco scaffold2988_contigs=1~3440-3937 WASH_WAHD PF11945.3 g113550.t1 - 0.14 11.4 0 0.2 10.9 0 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:42462-42902 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~42462-42902 DBD_Tnp_Mut PF03108.10 g14262.t1 - 0.00000074 28.6 0 0.000001 28.2 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold469_contigs=1, transcript_loc=scaffold469_contigs=1:21547-21915 Augustus predicted protein sequence Tobacco scaffold469_contigs=1~21547-21915 ATHILA PF03078.10 g49786.t1 - 0.0000091 24.5 0.4 0.011 14.3 0.2 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:138934-139431 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~138934-139431 TIL PF01826.12 g10986.t1 - 0.082 13 4.7 0.13 12.3 3.3 1.4 1 0 0 1 1 1 0 Trypsin Inhibitor like cysteine rich domain | Ref_seq=scaffold399_contigs=4, transcript_loc=scaffold399_contigs=4:39571-40018 Augustus predicted protein sequence Tobacco scaffold399_contigs=4~39571-40018 Ribosomal_60s PF00428.14 g108017.t1 - 0.083 13.2 0.7 0.092 13.1 0.5 1.1 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:121235-121583 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~121235-121583 DUF3359 PF11839.3 g1815.t1 - 1 9.7 6.2 4.9 7.5 4.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3359) | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:70680-70967 Augustus predicted protein sequence Tobacco scaffold194_contigs=2~70680-70967 PriCT_2 PF08707.6 g58070.t1 - 0.013 15.3 0.2 0.06 13.2 0.1 2 1 1 0 1 1 1 0 Primase C terminal 2 (PriCT-2) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:290136-291372 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~290136-291372 DUF4510 PF14971.1 g70176.t1 - 0.0042 17.2 1 0.0048 17.1 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4510) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:20921-21229 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~20921-21229 Trep_dent_lipo PF09710.5 g91554.t1 - 0.15 10.7 0.2 0.16 10.6 0.1 1 1 0 0 1 1 1 0 Treponema clustered lipoprotein (Trep_dent_lipo) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:233354-233754 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~233354-233754 HBS1_N PF08938.5 g31210.t1 - 0.029 14.4 0.1 0.037 14.1 0.1 1.2 1 0 0 1 1 1 0 HBS1 N-terminus | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:25237-25560 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~25237-25560 Ribosomal_L15e PF00827.12 g102860.t1 - 0.023 14.1 1 0.036 13.5 0.7 1.4 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:49609-50133 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~49609-50133 MAR_sialic_bdg PF10564.4 g57193.t1 - 0.015 15 0.1 0.016 14.9 0.1 1.1 1 0 0 1 1 1 0 Sialic-acid binding micronemal adhesive repeat | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:762513-762719 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~762513-762719 IP_trans PF02121.13 g64797.t1 - 0.00067 18.9 0.4 0.00067 18.9 0.3 1.1 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:189770-190112 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~189770-190112 CAF-1_p150 PF11600.3 g100987.t1 - 0.00052 19.4 29.3 0.00057 19.3 20.3 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:525680-526078 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~525680-526078 Condensin2nSMC PF12422.3 g78919.t1 - 0.099 12.3 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Condensin II non structural maintenance of chromosomes subunit | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:30202-30534 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~30202-30534 AgrB PF04647.10 g44889.t1 - 0.081 11.9 0.7 0.1 11.6 0.5 1.1 1 0 0 1 1 1 0 Accessory gene regulator B | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:138861-139247 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~138861-139247 Peptidase_S29 PF02907.10 g101373.t1 - 0.041 13.4 0.2 0.06 12.8 0.1 1.3 1 1 0 1 1 1 0 Hepatitis C virus NS3 protease | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:128675-128947 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~128675-128947 DUF4387 PF14330.1 g1574.t1 - 0.069 13.4 0 0.082 13.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold186_contigs=2, transcript_loc=scaffold186_contigs=2:18724-19032 Augustus predicted protein sequence Tobacco scaffold186_contigs=2~18724-19032 DUF2188 PF09954.4 g34627.t1 - 0.053 13.4 3.3 0.07 13 2.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:88885-89574 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~88885-89574 PhaP_Bmeg PF09602.5 g18023.t1 - 0.069 12.9 0.4 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:276856-277200 Augustus predicted protein sequence Tobacco scaffold540_contigs=6~276856-277200 zf-CCHC PF00098.18 g29480.t1 - 0.00033 20.4 0.7 0.00065 19.5 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:35644-36624 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~35644-36624 DBD_Tnp_Mut PF03108.10 g54548.t1 - 2.7E-009 36.4 0.1 4.5E-009 35.7 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:102415-103289 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~102415-103289 PEPcase PF00311.12 g34445.t1 - 0.066 11 2.5 0.078 10.8 1.8 1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:40598-41307 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~40598-41307 SCRG1 PF15224.1 g57313.t1 - 0.051 13.3 0 0.072 12.9 0 1.3 1 0 0 1 1 1 0 Scrapie-responsive protein 1 | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:37791-38054 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~37791-38054 Pol_alpha_B_N PF08418.5 g83899.t1 - 0.67 9.4 16.7 0.73 9.3 11.6 1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:55075-55582 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~55075-55582 Asp-B-Hydro_N PF05279.6 g3419.t1 - 0.039 13.7 3.7 0.047 13.5 2.6 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:29869-30261 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~29869-30261 IFP_35_N PF07334.8 g64625.t1 - 0.043 13.7 2.2 0.33 10.9 0.7 2.5 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:168952-169644 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~168952-169644 bZIP_1 PF00170.16 g109975.t1 - 0.1 12.5 1.2 0.26 11.2 0.6 1.8 2 0 0 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:87134-87502 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~87134-87502 HALZ PF02183.13 g118398.t1 - 0.00017 21.2 9.4 0.0024 17.5 1.3 3.1 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:615666-616295 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~615666-616295 ING PF12998.2 g81339.t1 - 0.0053 17 2.3 0.012 15.9 0 2.4 2 1 1 3 3 3 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:44202-45096 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~44202-45096 Pox_A11 PF05061.8 g109184.t1 - 0.0089 15.1 0.6 0.0094 15 0.4 1.1 1 0 0 1 1 1 1 Poxvirus A11 Protein | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:283178-283450 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~283178-283450 SR-25 PF10500.4 g60803.t1 - 5.7 6.3 12.7 6.5 6.1 8.8 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:100852-101142 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~100852-101142 MHCassoc_trimer PF08831.5 g68956.t1 - 0.16 11.8 2.1 0.24 11.2 0.2 2 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:196429-196884 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~196429-196884 FtsH_ext PF06480.10 g17653.t1 - 0.02 15 0.1 0.033 14.3 0.1 1.2 1 0 0 1 1 1 0 FtsH Extracellular | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:15032-16085 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~15032-16085 HSP70 PF00012.15 g29806.t1 - 1.8 6.4 8.1 1.8 6.3 5.6 1 1 0 0 1 1 1 0 Hsp70 protein | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:147045-147464 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~147045-147464 VLPT PF07122.6 g47962.t1 - 0.012 15.3 0.8 1.2 8.9 0 2.9 3 0 0 3 3 3 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:206044-206313 Augustus predicted protein sequence Tobacco scaffold1103_contigs=14~206044-206313 DUF3674 PF12426.3 g109861.t1 - 0.16 11.3 1 0.29 10.5 0.7 1.4 1 0 0 1 1 1 0 RNA dependent RNA polymerase | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:358198-358811 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~358198-358811 Complex1_LYR PF05347.10 g16210.t1 - 0.12 12.2 0.1 0.21 11.4 0 1.4 1 0 0 1 1 1 0 Complex 1 protein (LYR family) | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:95051-96050 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~95051-96050 SAF_2 PF13144.1 g44164.t1 - 0.11 12 0.1 0.12 11.8 0 1.1 1 0 0 1 1 1 0 SAF-like | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:119558-119782 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~119558-119782 SH2 PF00017.19 g109450.t1 - 0.041 13.6 0 0.07 12.9 0 1.4 1 0 0 1 1 1 0 SH2 domain | Ref_seq=scaffold2508_contigs=3, transcript_loc=scaffold2508_contigs=3:108468-108761 Augustus predicted protein sequence Tobacco scaffold2508_contigs=3~108468-108761 DUF2710 PF10921.3 g10162.t1 - 0.11 12.5 0 0.13 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:255647-256717 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~255647-256717 NUDIX_2 PF13869.1 g109909.t1 - 0.14 11.4 0 0.17 11.1 0 1 1 0 0 1 1 1 0 Nucleotide hydrolase | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:496795-497081 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~496795-497081 CUB_2 PF02408.15 g81565.t1 - 0.056 12.9 1.7 0.081 12.4 1.2 1.3 1 0 0 1 1 1 0 CUB-like domain | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:236408-236743 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~236408-236743 She9_MDM33 PF05546.6 g106422.t1 - 0.1 12 0.4 0.14 11.6 0.1 1.3 1 1 0 1 1 1 0 She9 / Mdm33 family | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:162029-162397 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~162029-162397 DZF PF07528.9 g100625.t1 - 0.088 12.2 0.1 0.1 12 0 1.1 1 0 0 1 1 1 0 DZF domain | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:120626-120934 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~120626-120934 ATHILA PF03078.10 g61691.t1 - 0.0046 15.6 0.1 0.0076 14.8 0.1 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:61394-62327 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~61394-62327 PKD_channel PF08016.7 g57693.t1 - 0.059 11.7 0 0.062 11.7 0 1 1 0 0 1 1 1 0 Polycystin cation channel | Ref_seq=scaffold1256_contigs=5, transcript_loc=scaffold1256_contigs=5:111486-111788 Augustus predicted protein sequence Tobacco scaffold1256_contigs=5~111486-111788 TFIIIC_delta PF12657.2 g43696.t1 - 0.15 11.7 1.2 0.17 11.5 0.8 1.1 1 0 0 1 1 1 0 Transcription factor IIIC subunit delta N-term | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:431805-432014 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~431805-432014 DUF2360 PF10152.4 g51602.t1 - 0.0099 16.1 0.7 0.015 15.6 0.5 1.3 1 0 0 1 1 1 1 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:249889-250284 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~249889-250284 DUF4431 PF14485.1 g124744.t1 - 4.2 7 8.7 10 5.8 0.1 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4431) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:46621-47144 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~46621-47144 DUF2605 PF10792.4 g25507.t1 - 0.015 14.9 0 0.019 14.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) | Ref_seq=scaffold698_contigs=2, transcript_loc=scaffold698_contigs=2:47367-47684 Augustus predicted protein sequence Tobacco scaffold698_contigs=2~47367-47684 Nop14 PF04147.7 g73630.t1 - 4.2 5.1 26.1 4 5.2 18.1 1.1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:29984-30454 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~29984-30454 DUF663 PF04950.7 g3334.t1 - 0.017 14.1 0.3 0.018 14 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF663) | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:52441-52782 Augustus predicted protein sequence Tobacco scaffold230_contigs=2~52441-52782 DUF2742 PF10888.3 g107463.t1 - 0.12 12.2 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:58934-59269 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~58934-59269 SWIM PF04434.12 g12401.t1 - 0.0013 18.1 0.2 0.0042 16.5 0.1 2 2 0 0 2 2 2 1 SWIM zinc finger | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:182140-182738 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~182140-182738 RVP_2 PF08284.6 g72418.t1 - 0.00059 19.7 0 0.0011 18.9 0 1.4 2 0 0 2 2 2 1 Retroviral aspartyl protease | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1060725-1061042 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1060725-1061042 ATHILA PF03078.10 g70196.t1 - 0.005 15.4 0 0.024 13.2 0 1.8 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:50629-51474 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~50629-51474 FoP_duplication PF13865.1 g21972.t1 - 6 7.3 8 12 6.3 5.5 1.5 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:10417-10740 Augustus predicted protein sequence Tobacco scaffold607_contigs=8~10417-10740 DUF2334 PF10096.4 g15447.t1 - 0.099 12 0 0.11 11.8 0 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:355306-355530 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~355306-355530 Musclin PF11037.3 g86529.t1 - 0.037 13.6 0 0.042 13.4 0 1.1 1 0 0 1 1 1 0 Insulin-resistance promoting peptide in skeletal muscle | Ref_seq=scaffold1849_contigs=4, transcript_loc=scaffold1849_contigs=4:14532-14750 Augustus predicted protein sequence Tobacco scaffold1849_contigs=4~14532-14750 Fer4_8 PF13183.1 g22177.t1 - 0.038 14 0 0.043 13.8 0 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:90268-90510 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~90268-90510 DUF3613 PF12266.3 g75973.t1 - 0.022 14.2 0.1 0.05 13.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3613) | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:144729-145274 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~144729-145274 HisG PF01634.13 g80769.t1 - 0.077 12.5 0 0.26 10.8 0 1.7 2 0 0 2 2 2 0 ATP phosphoribosyltransferase | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:256867-258730 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~256867-258730 DUF2968 PF11180.3 g22686.t1 - 0.023 14.1 0.5 0.029 13.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:121834-122172 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~121834-122172 DUF4348 PF14254.1 g11447.t1 - 0.069 12.2 0 0.074 12.1 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4348) | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:307920-309228 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~307920-309228 THUMP PF02926.12 g49963.t1 - 0.031 14.1 1.1 0.062 13.1 0.7 1.5 1 0 0 1 1 1 0 THUMP domain | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:455529-458173 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~455529-458173 Beta-TrCP_D PF12125.3 g37738.t1 - 0.6 9.7 2.8 6.2 6.5 0.2 2.5 2 0 0 2 2 2 0 D domain of beta-TrCP | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:299248-300641 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~299248-300641 DUF4032 PF13224.1 g13517.t1 - 0.14 11.8 0.1 13 5.4 0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4032) | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:220649-223476 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~220649-223476 Matrilin_ccoil PF10393.4 g19092.t1 - 0.11 11.8 0.7 0.22 10.9 0.5 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:292596-292913 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~292596-292913 Tet_res_leader PF08050.7 g101609.t1 - 0.14 11.7 0.9 0.38 10.4 0 2.1 2 0 0 2 2 2 0 Tetracycline resistance leader peptide | Ref_seq=scaffold2213_contigs=11, transcript_loc=scaffold2213_contigs=11:40339-41073 Augustus predicted protein sequence Tobacco scaffold2213_contigs=11~40339-41073 zf-RNPHF PF08080.7 g71595.t1 - 0.0041 16.5 0.7 1.1 8.8 0.1 2.7 3 0 0 3 3 3 2 RNPHF zinc finger | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:102735-103597 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~102735-103597 DUF2215 PF10225.4 g2127.t1 - 0.00075 19 2.1 0.00087 18.8 1.4 1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:35052-35423 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~35052-35423 DUF2110 PF09883.4 g75091.t1 - 0.072 12.7 0.1 0.093 12.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2110) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:149907-150453 Augustus predicted protein sequence Tobacco scaffold1566_contigs=4~149907-150453 Glyco_hydro_68 PF02435.11 g17404.t1 - 0.032 12.9 0 0.046 12.4 0 1.2 1 0 0 1 1 1 0 Levansucrase/Invertase | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:489487-490864 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~489487-490864 PAT1 PF09770.4 g32945.t1 - 2 6.5 7.2 2.2 6.4 5 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:22175-22429 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~22175-22429 DUF2205 PF10224.4 g41403.t1 - 0.13 11.8 0 0.22 11.1 0 1.3 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:216955-217391 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~216955-217391 PI3K_1B_p101 PF10486.4 g128950.t1 - 0.0044 14.6 0.7 0.0051 14.4 0.5 1 1 0 0 1 1 1 1 Phosphoinositide 3-kinase gamma adapter protein p101 subunit | Ref_seq=scaffold2903_contigs=1, transcript_loc=scaffold2903_contigs=1:8618-8971 Augustus predicted protein sequence Tobacco scaffold2903_contigs=1~8618-8971 RVT_3 PF13456.1 g19488.t1 - 0.00012 21.7 0.4 0.15 11.8 0.1 2.2 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:666785-667291 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~666785-667291 DREPP PF05558.7 g52127.t1 - 0.00039 20.3 4 0.00039 20.3 2.8 1.4 2 0 0 2 2 2 1 DREPP plasma membrane polypeptide | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:482766-483976 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~482766-483976 ERM PF00769.14 g38622.t1 - 0.014 14.9 0.4 0.016 14.7 0.3 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:213763-214184 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~213763-214184 DBD_Tnp_Mut PF03108.10 g124375.t1 - 0.00084 18.8 0.5 0.0013 18.2 0.3 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2085212-2086309 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2085212-2086309 RVT_3 PF13456.1 g17825.t1 - 0.0000042 26.4 0.1 0.0000062 25.9 0.1 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:307350-308510 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~307350-308510 GPW_gp25 PF04965.9 g120611.t1 - 0.056 12.9 0.4 0.071 12.6 0.3 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:324978-325232 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~324978-325232 EF-hand_like PF09279.6 g93269.t1 - 0.0061 16.5 0.4 0.012 15.6 0.3 1.5 1 0 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:133221-133727 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~133221-133727 Nucleoplasmin PF03066.10 g69864.t1 - 6.1 6.3 9.4 15 5 6.5 1.6 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:355466-359004 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~355466-359004 PY_rept_46 PF09689.5 g49148.t1 - 4.2 7.7 8.2 0.5 10.7 2.5 1.8 2 0 0 2 2 2 0 Plasmodium yoelii repeat (PY_rept_46) | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:87417-87695 Augustus predicted protein sequence Tobacco scaffold1113_contigs=8~87417-87695 FH2 PF02181.18 g70419.t1 - 0.0063 15.4 0 0.0078 15.1 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1494_contigs=2, transcript_loc=scaffold1494_contigs=2:23276-23875 Augustus predicted protein sequence Tobacco scaffold1494_contigs=2~23276-23875 SHOCT PF09851.4 g53948.t1 - 0.24 10.9 2.7 0.42 10.1 1.9 1.4 1 0 0 1 1 1 0 Short C-terminal domain | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:488764-489075 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~488764-489075 NPV_P10 PF05531.7 g53767.t1 - 0.037 14.2 0.1 0.24 11.6 0 2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:101009-101851 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~101009-101851 Tachykinin PF02202.11 g34920.t1 - 2.9 7.8 4.1 3.1 7.7 0.3 2.3 2 0 0 2 2 2 0 Tachykinin family | Ref_seq=scaffold863_contigs=2, transcript_loc=scaffold863_contigs=2:72650-72964 Augustus predicted protein sequence Tobacco scaffold863_contigs=2~72650-72964 SCAMP PF04144.8 g83513.t1 - 0.026 14.4 1.3 0.033 14 0.9 1.1 1 0 0 1 1 1 0 SCAMP family | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:170848-171225 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~170848-171225 YdjO PF14169.1 g17990.t1 - 0.093 12.1 0.1 0.28 10.6 0.1 1.7 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold540_contigs=6, transcript_loc=scaffold540_contigs=6:185808-186750 Augustus predicted protein sequence Tobacco scaffold540_contigs=6~185808-186750 DUF1843 PF08898.5 g22735.t1 - 0.091 12.8 0 6.7 6.8 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:217491-217760 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~217491-217760 NMT1 PF09084.6 g64392.t1 - 0.012 15.2 0.2 1.7 8.2 0 2.3 2 0 0 2 2 2 0 NMT1/THI5 like | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:164920-165942 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~164920-165942 PIP49_N PF14875.1 g69765.t1 - 0.28 10.8 1.5 0.32 10.6 1 1.1 1 0 0 1 1 1 0 N-term cysteine-rich ER, FAM69 | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:94946-95305 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~94946-95305 Meth_synt_1 PF08267.7 g68899.t1 - 0.03 13.6 0 0.033 13.4 0 1.1 1 0 0 1 1 1 0 Cobalamin-independent synthase, N-terminal domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:77229-77693 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~77229-77693 PTPS PF01242.14 g95300.t1 - 0.0064 16.1 0.3 0.0072 16 0.2 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:38765-38986 Augustus predicted protein sequence Tobacco scaffold2057_contigs=11~38765-38986 BOP1NT PF08145.7 g12730.t1 - 0.083 12.6 0.4 0.094 12.4 0.3 1.1 1 0 0 1 1 1 0 BOP1NT (NUC169) domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:356954-357716 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~356954-357716 DUF1348 PF07080.6 g63185.t1 - 0.062 13.1 0.1 0.062 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:61812-62348 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~61812-62348 Mnd1 PF03962.10 g118286.t1 - 0.02 14.5 0.4 0.027 14.1 0.2 1.2 1 0 0 1 1 1 0 Mnd1 family | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:285850-286269 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~285850-286269 Exo_endo_phos_2 PF14529.1 g64342.t1 - 0.047 13.2 0 0.062 12.9 0 1.2 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:50478-51369 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~50478-51369 zf-CCHC PF00098.18 g63621.t1 - 0.038 13.9 3 0.038 13.9 2.1 2.8 3 1 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold1378_contigs=1, transcript_loc=scaffold1378_contigs=1:1563-1787 Augustus predicted protein sequence Tobacco scaffold1378_contigs=1~1563-1787 RDV-p3 PF09231.5 g80817.t1 - 0.012 13 0.3 0.013 12.9 0.2 1 1 0 0 1 1 1 0 Rice dwarf virus p3 | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:108791-108997 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~108791-108997 UBN2 PF14223.1 g32644.t1 - 0.000063 22.7 0.2 0.00016 21.4 0 1.5 1 1 1 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:553547-554005 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~553547-554005 GcrA PF07750.6 g69367.t1 - 0.011 15.9 0.6 0.6 10.2 0.1 2.3 1 1 1 2 2 2 0 GcrA cell cycle regulator | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:120711-121429 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~120711-121429 ATP-synt_J PF04911.7 g78050.t1 - 0.1 12 0 0.14 11.6 0 1.2 1 0 0 1 1 1 0 ATP synthase j chain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:295096-295305 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~295096-295305 FlaA PF04620.7 g130278.t1 - 0.011 15.1 0 0.013 14.9 0 1 1 0 0 1 1 1 0 Flagellar filament outer layer protein Flaa | Ref_seq=scaffold3884_contigs=1, transcript_loc=scaffold3884_contigs=1:68-319 Augustus predicted protein sequence Tobacco scaffold3884_contigs=1~68-319 DUF2894 PF11445.3 g46846.t1 - 1.1 9.4 11 0.71 10.1 2.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold1079_contigs=2, transcript_loc=scaffold1079_contigs=2:37874-38971 Augustus predicted protein sequence Tobacco scaffold1079_contigs=2~37874-38971 Nop14 PF04147.7 g9704.t1 - 0.018 12.9 7.6 0.017 13 5.3 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:120166-120507 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~120166-120507 RXT2_N PF08595.6 g84373.t1 - 0.01 15.6 0.3 0.011 15.6 0.2 1.1 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:13278-13674 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~13278-13674 CAP_assoc_N PF14504.1 g123577.t1 - 0.04 13.6 0 0.044 13.4 0 1.1 1 0 0 1 1 1 0 CAP-associated N-terminal | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:24934-25164 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~24934-25164 Herpes_heli_pri PF05774.6 g34326.t1 - 0.095 12.6 0.1 1.3 9 0 2 2 0 0 2 2 2 0 Herpesvirus helicase-primase complex component | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:11576-12113 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~11576-12113 UBN2 PF14223.1 g107379.t1 - 0.023 14.4 0.1 0.054 13.2 0 1.6 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1253690-1254094 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1253690-1254094 PMD PF10536.4 g64604.t1 - 0.000026 23.4 0.1 0.000037 22.8 0.1 1.2 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:101809-103022 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~101809-103022 DUF3008 PF11450.3 g39731.t1 - 0.0057 16.7 1.9 0.0057 16.7 1.3 1.5 2 0 0 2 2 2 1 Protein of unknwon function (DUF3008) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:133881-134129 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~133881-134129 DUF4283 PF14111.1 g40505.t1 - 0.0044 16.1 0 0.0046 16 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:28377-28610 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~28377-28610 CaATP_NAI PF12515.3 g5248.t1 - 0.038 13.4 2.8 0.085 12.3 2 1.6 1 0 0 1 1 1 0 Ca2+-ATPase N terminal autoinhibitory domain | Ref_seq=scaffold274_contigs=4, transcript_loc=scaffold274_contigs=4:155639-156328 Augustus predicted protein sequence Tobacco scaffold274_contigs=4~155639-156328 Peptidase_C36 PF05415.6 g29964.t1 - 0.018 14.8 0 0.023 14.5 0 1.2 1 0 0 1 1 1 0 Beet necrotic yellow vein furovirus-type papain-like endopeptidase | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:122567-124244 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~122567-124244 DUF2003 PF09404.5 g65108.t1 - 0.11 10.8 0.1 0.13 10.6 0 1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF2003) | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:70048-70472 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~70048-70472 CAF-1_p150 PF11600.3 g114363.t1 - 1.1 8.5 10 1.2 8.4 7 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:20598-20807 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~20598-20807 NADH_4Fe-4S PF10589.4 g103890.t1 - 0.011 14.8 0.3 0.023 13.8 0.1 1.6 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:305819-306055 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~305819-306055 Retinal PF15449.1 g29752.t1 - 8.4 3.8 7.4 10 3.6 5.2 1 1 0 0 1 1 1 0 Retinal protein | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:15195-16469 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~15195-16469 PPR_2 PF13041.1 g110802.t1 - 0.00014 21.7 0 0.00028 20.8 0 1.5 1 0 0 1 1 1 1 PPR repeat family | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:584480-584859 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~584480-584859 UBN2_3 PF14244.1 g57467.t1 - 0.014 14.9 1.4 0.014 14.9 1 1.7 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:231194-231918 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~231194-231918 HCR PF07111.7 g73995.t1 - 0.075 11 0 0.082 10.8 0 1.1 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:353936-354265 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~353936-354265 PqqA PF08042.6 g86281.t1 - 0.092 12.4 1.8 6 6.6 0 2.8 3 0 0 3 3 3 0 PqqA family | Ref_seq=scaffold1843_contigs=11, transcript_loc=scaffold1843_contigs=11:27488-27844 Augustus predicted protein sequence Tobacco scaffold1843_contigs=11~27488-27844 FpoO PF10621.4 g47470.t1 - 0.016 15.2 0.2 0.1 12.6 0 1.9 1 1 1 2 2 2 0 F420H2 dehydrogenase subunit FpoO | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:70934-71203 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~70934-71203 Colipase-like PF15083.1 g58622.t1 - 0.38 10.7 3 0.71 9.8 0.3 2 1 1 1 2 2 2 0 Colipase-like | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:310483-311025 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~310483-311025 IgaA PF07095.6 g24456.t1 - 0.16 9.6 0 0.18 9.5 0 1 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:254722-254994 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~254722-254994 7TM_GPCR_Srsx PF10320.4 g71899.t1 - 0.084 12 0 0.11 11.6 0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srsx | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:67611-68024 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~67611-68024 Baculo_11_kDa PF06143.6 g53299.t1 - 0.0054 16 1 0.0092 15.3 0.7 1.3 1 0 0 1 1 1 1 Baculovirus 11 kDa family | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:40316-43102 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~40316-43102 ATHILA PF03078.10 g109503.t1 - 0.03 12.9 0 0.03 12.9 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:119311-119767 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~119311-119767 NAP PF00956.13 g78780.t1 - 0.041 12.9 0 0.049 12.7 0 1.1 1 0 0 1 1 1 0 Nucleosome assembly protein (NAP) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:139377-139837 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~139377-139837 APG6 PF04111.7 g99.t1 - 0.092 11.7 4.1 0.11 11.5 2.8 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold4_contigs=1, transcript_loc=scaffold4_contigs=1:4629-4925 Augustus predicted protein sequence Tobacco scaffold4_contigs=1~4629-4925 Peptidase_C24 PF03510.9 g66464.t1 - 0.042 14 0 0.055 13.6 0 1.1 1 0 0 1 1 1 0 2C endopeptidase (C24) cysteine protease family | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:141198-141527 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~141198-141527 DUF2407_C PF13373.1 g65137.t1 - 0.098 12.5 0 0.1 12.4 0 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:133551-133913 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~133551-133913 Hemerythrin PF01814.18 g24835.t1 - 0.095 12.8 0 0.12 12.4 0 1.1 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:105715-106935 Augustus predicted protein sequence Tobacco scaffold677_contigs=5~105715-106935 ATHILA PF03078.10 g26827.t1 - 0.00000016 30.3 0 0.00000017 30.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:369350-369748 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~369350-369748 HD-ZIP_N PF04618.7 g111909.t1 - 1.6 9.3 8.4 3 8.4 5.3 2.1 2 1 0 2 2 2 0 HD-ZIP protein N terminus | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:1085-1552 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~1085-1552 GSu_C4xC__C2xCH PF09698.5 g68089.t1 - 0.075 13.2 0.4 0.092 12.9 0.3 1.4 1 1 0 1 1 1 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:101513-101719 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~101513-101719 Abhydrolase_9_N PF15420.1 g57843.t1 - 0.062 13 3.7 0.084 12.6 2.6 1.3 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus | Ref_seq=scaffold1260_contigs=17, transcript_loc=scaffold1260_contigs=17:349158-349692 Augustus predicted protein sequence Tobacco scaffold1260_contigs=17~349158-349692 NMD3 PF04981.8 g82268.t1 - 0.0055 15.8 0 0.0059 15.7 0 1.1 1 0 0 1 1 1 1 NMD3 family | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:91732-92172 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~91732-92172 zf-CCHC_5 PF14787.1 g42373.t1 - 0.035 13.5 3.3 0.035 13.5 2.3 1.8 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:158855-159589 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~158855-159589 MnhB PF04039.8 g22460.t1 - 0.038 14 1.1 0.045 13.8 0.7 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter | Ref_seq=scaffold620_contigs=3, transcript_loc=scaffold620_contigs=3:86679-86891 Augustus predicted protein sequence Tobacco scaffold620_contigs=3~86679-86891 PMD PF10536.4 g108958.t1 - 0.000018 23.8 0.1 0.00034 19.7 0 2.1 1 1 0 2 2 2 2 Plant mobile domain | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:15625-18047 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~15625-18047 DUF594 PF04578.8 g9251.t1 - 0.0039 16.6 0 2.9 7.3 0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF594 | Ref_seq=scaffold356_contigs=12, transcript_loc=scaffold356_contigs=12:14752-18187 Augustus predicted protein sequence Tobacco scaffold356_contigs=12~14752-18187 Retrotrans_gag PF03732.12 g63610.t1 - 0.011 15.7 0 0.38 10.8 0 2.1 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:85655-86675 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~85655-86675 zf-BED PF02892.10 g97286.t1 - 0.0022 17.6 0.1 0.0045 16.7 0.1 1.6 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2132_contigs=4, transcript_loc=scaffold2132_contigs=4:60454-61152 Augustus predicted protein sequence Tobacco scaffold2132_contigs=4~60454-61152 CaM-KIIN PF15170.1 g50274.t1 - 0.21 11.6 1.2 1.1 9.2 0.1 2.4 1 1 2 3 3 3 0 Calcium/calmodulin-dependent protein kinase II inhibitor | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:268856-269086 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~268856-269086 Minor_tail_Z PF06763.6 g119713.t1 - 0.017 14.8 0 0.02 14.5 0 1.1 1 0 0 1 1 1 0 Prophage minor tail protein Z (GPZ) | Ref_seq=scaffold2717_contigs=3, transcript_loc=scaffold2717_contigs=3:12648-12890 Augustus predicted protein sequence Tobacco scaffold2717_contigs=3~12648-12890 Occludin_ELL PF07303.8 g40416.t1 - 0.33 11.7 4.2 0.38 11.5 2.9 1.1 1 0 0 1 1 1 0 Occludin homology domain | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:104251-104994 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~104251-104994 CbiG_mid PF11761.3 g127639.t1 - 0.11 12.7 1.4 8.4 6.7 0.1 3 2 1 1 3 3 3 0 Cobalamin biosynthesis central region | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:26715-27713 Augustus predicted protein sequence Tobacco scaffold2832_contigs=1~26715-27713 BUD22 PF09073.5 g9780.t1 - 0.83 8.6 37.4 0.93 8.4 25.9 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:192949-193383 Augustus predicted protein sequence Tobacco scaffold379_contigs=8~192949-193383 BSP_II PF05432.6 g12339.t1 - 0.0000067 25.5 0.8 0.0000082 25.2 0.5 1.1 1 0 0 1 1 1 1 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold425_contigs=5, transcript_loc=scaffold425_contigs=5:92831-93202 Augustus predicted protein sequence Tobacco scaffold425_contigs=5~92831-93202 APC_CDC26 PF10471.4 g105354.t1 - 0.0025 18.5 1.8 0.0025 18.5 1.3 2 2 0 0 2 2 2 1 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:452908-453867 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~452908-453867 YdjO PF14169.1 g96921.t1 - 0.012 15 0 0.027 13.9 0 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:118465-119100 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~118465-119100 SR-25 PF10500.4 g65324.t1 - 5.4 6.4 8.5 6.6 6.1 5.9 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:32184-33785 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~32184-33785 DUF2269 PF10027.4 g96587.t1 - 0.024 14.4 7.5 0.61 9.8 0.6 2.3 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) | Ref_seq=scaffold2114_contigs=7, transcript_loc=scaffold2114_contigs=7:1300-3449 Augustus predicted protein sequence Tobacco scaffold2114_contigs=7~1300-3449 MiAMP1 PF09117.5 g92309.t1 - 0.12 12.8 0 0.15 12.5 0 1.1 1 0 0 1 1 1 0 MiAMP1 | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:253775-254750 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~253775-254750 DUF2605 PF10792.4 g77259.t1 - 0.13 11.9 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:192403-192684 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~192403-192684 DUF4219 PF13961.1 g121049.t1 - 0.0087 15.4 0 0.015 14.7 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:281543-281755 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~281543-281755 Cytadhesin_P30 PF07271.6 g74561.t1 - 0.0005 19.4 2.1 0.0005 19.4 1.4 1.3 1 1 0 1 1 1 1 Cytadhesin P30/P32 | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:169437-169856 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~169437-169856 Glyco_trans_1_4 PF13692.1 g34666.t1 - 0.03 14.4 0.1 0.054 13.6 0.1 1.5 1 1 0 1 1 1 0 Glycosyl transferases group 1 | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:49793-50050 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~49793-50050 Rgp1 PF08737.5 g50723.t1 - 0.11 11.5 0 0.14 11.2 0 1 1 0 0 1 1 1 0 Rgp1 | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:100008-100427 Augustus predicted protein sequence Tobacco scaffold1144_contigs=4~100008-100427 Bromo_MP PF01573.11 g39935.t1 - 0.096 11.6 0 0.13 11.1 0 1.2 1 0 0 1 1 1 0 Bromovirus movement protein | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:10281-10529 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~10281-10529 UBN2 PF14223.1 g101167.t1 - 0.045 13.5 0.2 0.49 10.1 0 2.2 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:192692-194174 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~192692-194174 Toxin-JAB1 PF15659.1 g127425.t1 - 0.0069 16.2 0.1 0.009 15.9 0.1 1.2 1 0 0 1 1 1 1 JAB-like toxin 1 | Ref_seq=scaffold2824_contigs=1, transcript_loc=scaffold2824_contigs=1:62761-63556 Augustus predicted protein sequence Tobacco scaffold2824_contigs=1~62761-63556 UBN2 PF14223.1 g85744.t1 - 0.013 15.2 0.1 0.6 9.9 0 2.1 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:500060-500296 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~500060-500296 EBV-NA3 PF05009.7 g130198.t1 - 0.17 11 2.3 0.18 11 1.6 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold3639_contigs=1, transcript_loc=scaffold3639_contigs=1:67-300 Augustus predicted protein sequence Tobacco scaffold3639_contigs=1~67-300 Paf1 PF03985.8 g32686.t1 - 7.1 5.2 11.9 7.6 5.1 8.2 1.1 1 0 0 1 1 1 0 Paf1 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:673845-674213 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~673845-674213 HALZ PF02183.13 g74612.t1 - 0.05 13.3 10 0.87 9.3 2.3 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1561_contigs=2, transcript_loc=scaffold1561_contigs=2:4838-5275 Augustus predicted protein sequence Tobacco scaffold1561_contigs=2~4838-5275 Orexin_rec2 PF03827.8 g16897.t1 - 1.8 8.6 4.3 12 6 0.1 3.2 2 1 1 3 3 3 0 Orexin receptor type 2 | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:99829-101766 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~99829-101766 Laminin_N PF00055.12 g37385.t1 - 0.082 11.8 0 0.098 11.6 0 1.1 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:130005-130268 Augustus predicted protein sequence Tobacco scaffold924_contigs=4~130005-130268 MCPsignal PF00015.16 g118218.t1 - 0.047 13.2 0.1 0.097 12.1 0 1.6 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:110971-113420 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~110971-113420 Dimer_Tnp_hAT PF05699.9 g89813.t1 - 0.000048 22.9 0.2 0.000063 22.5 0.1 1.2 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:72027-72384 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~72027-72384 TMEM247 PF15444.1 g8592.t1 - 0.4 10.4 2.4 0.42 10.3 1.7 1 1 0 0 1 1 1 0 Transmembrane protein 247 | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:305705-306066 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~305705-306066 MtN3_slv PF03083.11 g67216.t1 - 0.032 14.1 0 0.04 13.7 0 1.1 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:800484-801160 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~800484-801160 PMG PF05287.7 g65589.t1 - 0.046 13.5 0.1 0.077 12.8 0.1 1.4 1 1 0 1 1 1 0 PMG protein | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:38935-39180 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~38935-39180 CBM_2 PF00553.14 g78046.t1 - 0.0066 16.4 0.3 0.0085 16.1 0.2 1.2 1 0 0 1 1 1 1 Cellulose binding domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:288615-289046 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~288615-289046 DUF3677 PF12432.3 g76051.t1 - 0.044 14.2 0 0.076 13.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3677) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:72404-73747 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~72404-73747 Phage_cap_E PF03864.10 g88128.t1 - 0.0024 16.8 0.1 0.0026 16.7 0.1 1 1 0 0 1 1 1 1 Phage major capsid protein E | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:192259-192582 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~192259-192582 Septin PF00735.13 g101255.t1 - 0.081 11.9 0 0.087 11.8 0 1 1 0 0 1 1 1 0 Septin | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:105921-106190 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~105921-106190 zf-RING_UBOX PF13445.1 g41893.t1 - 0.11 12.2 0.2 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 RING-type zinc-finger | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:178038-179008 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~178038-179008 Protocadherin PF08374.6 g5654.t1 - 0.052 13.1 0.4 0.061 12.9 0.3 1.2 1 0 0 1 1 1 0 Protocadherin | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:107205-107784 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~107205-107784 DUF1347 PF07079.6 g59168.t1 - 0.11 10.6 0.4 0.11 10.6 0.3 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:68238-68594 Augustus predicted protein sequence Tobacco scaffold1283_contigs=15~68238-68594 RVT_3 PF13456.1 g90102.t1 - 0.1 12.3 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:72979-73536 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~72979-73536 MIase PF02426.11 g2675.t1 - 0.12 12.2 0 0.14 11.9 0 1.3 1 1 0 1 1 1 0 Muconolactone delta-isomerase | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:61580-61813 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~61580-61813 Nicastrin PF05450.10 g113955.t1 - 0.16 11.2 0.2 1.8 7.7 0 2 1 1 1 2 2 2 0 Nicastrin | Ref_seq=scaffold2639_contigs=24, transcript_loc=scaffold2639_contigs=24:10360-10623 Augustus predicted protein sequence Tobacco scaffold2639_contigs=24~10360-10623 DBD_Tnp_Mut PF03108.10 g127485.t1 - 0.0031 17 0.1 0.0049 16.3 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2827_contigs=1, transcript_loc=scaffold2827_contigs=1:20183-20740 Augustus predicted protein sequence Tobacco scaffold2827_contigs=1~20183-20740 DUF2043 PF09740.4 g80373.t1 - 0.082 13 0.1 0.1 12.7 0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:156591-157206 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~156591-157206 Vitelline_membr PF10542.4 g10547.t1 - 0.023 14.3 0.9 0.023 14.3 0.7 1.7 2 0 0 2 2 2 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:252608-252817 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~252608-252817 RVT_2 PF07727.9 g23853.t1 - 0.00000037 29.3 0 0.00000055 28.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:232704-235258 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~232704-235258 p47_phox_C PF08944.6 g56124.t1 - 0.049 13.8 0.8 0.049 13.8 0.6 2.7 2 1 0 2 2 2 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:105767-107197 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~105767-107197 DBD_Tnp_Mut PF03108.10 g6006.t1 - 3.9E-009 35.9 0 7.9E-009 34.9 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold289_contigs=3, transcript_loc=scaffold289_contigs=3:8679-11177 Augustus predicted protein sequence Tobacco scaffold289_contigs=3~8679-11177 UN_NPL4 PF11543.3 g88029.t1 - 0.13 12.5 0.2 3.5 7.9 0 2.1 2 0 0 2 2 2 0 Nuclear pore localisation protein NPL4 | Ref_seq=scaffold1908_contigs=3, transcript_loc=scaffold1908_contigs=3:9308-10156 Augustus predicted protein sequence Tobacco scaffold1908_contigs=3~9308-10156 Glypican PF01153.14 g53783.t1 - 2.1 6.8 5.1 2.1 6.8 3.5 1.1 1 0 0 1 1 1 0 Glypican | Ref_seq=scaffold1191_contigs=1, transcript_loc=scaffold1191_contigs=1:1-781 Augustus predicted protein sequence Tobacco scaffold1191_contigs=1~1-781 ATHILA PF03078.10 g62599.t1 - 0.000000043 32.1 0 0.000099 21.1 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:35055-35963 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~35055-35963 ATHILA PF03078.10 g33938.t1 - 0.047 12.2 0 0.055 12 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold835_contigs=3, transcript_loc=scaffold835_contigs=3:26605-26988 Augustus predicted protein sequence Tobacco scaffold835_contigs=3~26605-26988 eIF3g PF12353.3 g90199.t1 - 0.00019 21.3 0.8 0.00037 20.4 0.6 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:300829-301155 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~300829-301155 Dimer_Tnp_hAT PF05699.9 g89899.t1 - 0.0000095 25.1 0.1 0.000015 24.4 0.1 1.4 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:107350-109475 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~107350-109475 DUF458 PF04308.7 g8620.t1 - 0.023 14.3 0 0.025 14.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF458) | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:412956-413207 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~412956-413207 DUF4512 PF14975.1 g88244.t1 - 0.031 15 0.1 0.045 14.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4512) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:33012-33296 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~33012-33296 DUF4098 PF13345.1 g32647.t1 - 0.17 11.8 5.6 0.61 10 0.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4098) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:576685-580098 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~576685-580098 CemA PF03040.9 g1012.t1 - 0.017 14.7 0.1 0.017 14.7 0.1 1 1 0 0 1 1 1 0 CemA family | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:68803-69006 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~68803-69006 DUF3446 PF11928.3 g27530.t1 - 0.0027 17.8 4.9 0.0034 17.5 3.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3446) | Ref_seq=scaffold727_contigs=8, transcript_loc=scaffold727_contigs=8:250167-250799 Augustus predicted protein sequence Tobacco scaffold727_contigs=8~250167-250799 DUF4219 PF13961.1 g6113.t1 - 0.87 9 0 0.87 9 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:65400-65624 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~65400-65624 Plectin PF00681.15 g94169.t1 - 0.091 12.3 0 0.18 11.3 0 1.5 1 0 0 1 1 1 0 Plectin repeat | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:87147-87689 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~87147-87689 Nuc_sug_transp PF04142.10 g62671.t1 - 0.007 15.4 0 0.01 14.9 0 1.1 1 0 0 1 1 1 1 Nucleotide-sugar transporter | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:189151-190403 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~189151-190403 FlaC_arch PF05377.6 g107611.t1 - 0.098 12.5 0 0.23 11.3 0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:69397-70343 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~69397-70343 NosL PF05573.7 g55191.t1 - 0.3 10.7 1.1 0.39 10.4 0.8 1.2 1 0 0 1 1 1 0 NosL | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:93013-93258 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~93013-93258 DUF1832 PF08870.6 g9611.t1 - 0.085 12.5 0.1 0.11 12.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1832) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:122603-123116 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~122603-123116 Daxx PF03344.10 g111775.t1 - 0.23 9.9 11.1 0.22 9.9 7.7 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:177187-177471 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~177187-177471 ING PF12998.2 g26673.t1 - 0.035 14.3 0.1 1.6 9 0.1 2.1 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:134497-134967 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~134497-134967 DUF3557 PF12078.3 g117578.t1 - 0.048 13.3 0.7 0.059 13 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3557) | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:78709-79149 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~78709-79149 DHFR_1 PF00186.14 g8488.t1 - 0.12 11.9 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Dihydrofolate reductase | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:17960-18169 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~17960-18169 DUF4283 PF14111.1 g77963.t1 - 0.000021 23.6 0 0.000032 23 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:122690-123468 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~122690-123468 PEP-utilisers_N PF05524.8 g29098.t1 - 0.0097 15.7 0.3 0.014 15.1 0.2 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, N-terminal | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:107480-108003 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~107480-108003 DUF3094 PF11293.3 g82465.t1 - 1.7 8.1 4.1 24 4.5 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:1-3075 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~1-3075 HALZ PF02183.13 g89200.t1 - 0.035 13.8 8.9 0.66 9.7 1.4 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:63037-63759 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~63037-63759 DUF2507 PF10702.4 g96694.t1 - 0.078 12.6 0.1 0.087 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2507) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:160899-161150 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~160899-161150 Peptidase_S46 PF10459.4 g61299.t1 - 0.11 10.8 1.2 0.14 10.4 0.8 1.1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:126871-128062 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~126871-128062 Myc_N PF01056.13 g68268.t1 - 9.6 5.2 10.3 3.4 6.7 5.4 1.4 1 1 1 2 2 2 0 Myc amino-terminal region | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:56481-57248 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~56481-57248 YukC PF10140.4 g75283.t1 - 0.14 10.6 0 0.15 10.6 0 1.1 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:87732-87935 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~87732-87935 DUF4172 PF13776.1 g80704.t1 - 0.055 13.5 0.6 0.5 10.5 0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:143294-143743 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~143294-143743 ACT_4 PF13291.1 g107066.t1 - 0.0045 17.2 0.4 0.0096 16.2 0.3 1.5 1 0 0 1 1 1 1 ACT domain | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:552523-553221 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~552523-553221 DUF4499 PF14934.1 g75499.t1 - 0.13 12.2 0 5.3 7 0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4499) | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:93785-94213 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~93785-94213 Jag_N PF14804.1 g64679.t1 - 0.027 14.4 0.3 0.23 11.4 0.1 1.9 2 0 0 2 2 2 0 Jag N-terminus | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:258464-258670 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~258464-258670 Lectin_legB PF00139.14 g129668.t1 - 0.000063 22.4 0 0.000063 22.4 0 1 1 0 0 1 1 1 1 Legume lectin domain | Ref_seq=scaffold3013_contigs=1, transcript_loc=scaffold3013_contigs=1:8078-8238 Augustus predicted protein sequence Tobacco scaffold3013_contigs=1~8078-8238 Pox_mRNA-cap PF03341.8 g113134.t1 - 0.12 11.4 0 0.14 11.2 0 1 1 0 0 1 1 1 0 Poxvirus mRNA capping enzyme, small subunit | Ref_seq=scaffold2621_contigs=15, transcript_loc=scaffold2621_contigs=15:108734-110359 Augustus predicted protein sequence Tobacco scaffold2621_contigs=15~108734-110359 B5 PF03484.10 g35580.t1 - 0.11 12.3 0.1 1.2 9 0.1 2.6 2 1 0 2 2 2 0 tRNA synthetase B5 domain | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:126024-126500 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~126024-126500 FlxA PF14282.1 g115236.t1 - 0.036 14 2.1 0.036 14 1.4 2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:303653-304027 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~303653-304027 HD-ZIP_N PF04618.7 g56061.t1 - 0.036 14.5 1 0.048 14.1 0.7 1.2 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:3335-3613 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~3335-3613 PP_kinase_C PF13090.1 g65056.t1 - 0.084 11.4 0 7.9 4.9 0 2 2 0 0 2 2 2 0 Polyphosphate kinase C-terminal domain | Ref_seq=scaffold1395_contigs=11, transcript_loc=scaffold1395_contigs=11:19345-20100 Augustus predicted protein sequence Tobacco scaffold1395_contigs=11~19345-20100 FliJ PF02050.11 g51580.t1 - 0.017 15.1 4 0.023 14.7 2.8 1.3 1 0 0 1 1 1 0 Flagellar FliJ protein | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:200387-200698 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~200387-200698 Pentapeptide_4 PF13599.1 g114590.t1 - 0.13 12.1 0.1 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:23405-23749 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~23405-23749 zf-CCHC_5 PF14787.1 g114284.t1 - 0.021 14.3 1.7 0.021 14.3 1.2 2.3 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:22178-22405 Augustus predicted protein sequence Tobacco scaffold2644_contigs=21~22178-22405 NCD2 PF04905.8 g39504.t1 - 0.082 12.7 0.8 0.099 12.4 0.6 1.1 1 0 0 1 1 1 0 NAB conserved region 2 (NCD2) | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:83042-84003 Augustus predicted protein sequence Tobacco scaffold957_contigs=5~83042-84003 DUF2594 PF10769.4 g56415.t1 - 0.025 14.6 0.1 0.04 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:94419-94724 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~94419-94724 U1snRNP70_N PF12220.3 g13375.t1 - 0.022 15.1 1.5 0.025 14.8 1 1.1 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:68134-68397 Augustus predicted protein sequence Tobacco scaffold446_contigs=6~68134-68397 CCER1 PF15482.1 g62993.t1 - 0.13 11.8 1.9 0.72 9.4 0.1 2.1 1 1 0 2 2 2 0 Coiled-coil domain-containing glutamate-rich protein family 1 | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:171595-173606 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~171595-173606 Pol_alpha_B_N PF08418.5 g88679.t1 - 0.12 11.8 2.9 0.14 11.6 2 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:146884-147424 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~146884-147424 NAM-associated PF14303.1 g43343.t1 - 0.066 13.5 0.3 0.068 13.4 0.2 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:21065-21397 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~21065-21397 RXT2_N PF08595.6 g76240.t1 - 0.18 11.6 8.9 0.24 11.1 6.2 1.2 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1610_contigs=9, transcript_loc=scaffold1610_contigs=9:59020-59337 Augustus predicted protein sequence Tobacco scaffold1610_contigs=9~59020-59337 ADIP PF11559.3 g61536.t1 - 0.0015 18.4 1.5 0.002 18 1 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:57704-58033 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~57704-58033 UBN2_3 PF14244.1 g74431.t1 - 0.028 13.9 1.6 0.035 13.6 0.8 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:224161-224895 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~224161-224895 RVT_3 PF13456.1 g5229.t1 - 0.072 12.8 0 0.17 11.6 0 1.5 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold274_contigs=4, transcript_loc=scaffold274_contigs=4:99899-100498 Augustus predicted protein sequence Tobacco scaffold274_contigs=4~99899-100498 Integrase_1 PF12835.2 g102693.t1 - 0.098 12.4 0.2 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Integrase | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:74971-75619 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~74971-75619 Trypan_PARP PF05887.6 g37158.t1 - 1.3 8.8 13.1 1.4 8.6 9.1 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:285364-285570 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~285364-285570 DUF3651 PF12371.3 g36161.t1 - 0.11 12.5 0.1 2.5 8.1 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3651) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:399510-400122 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~399510-400122 DUF4208 PF13907.1 g8807.t1 - 0.025 14.7 0.2 0.036 14.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:215074-215864 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~215074-215864 Auxin_repressed PF05564.7 g47666.t1 - 0.026 15.1 1 0.036 14.6 0.7 1.3 1 0 0 1 1 1 0 Dormancy/auxin associated protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:475796-476071 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~475796-476071 OSTbeta PF15048.1 g73152.t1 - 0.0036 17.3 0 0.0043 17.1 0 1.1 1 0 0 1 1 1 1 Organic solute transporter subunit beta protein | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:21245-21508 Augustus predicted protein sequence Tobacco scaffold1531_contigs=12~21245-21508 PDDEXK_3 PF13366.1 g94809.t1 - 0.057 13.4 0.2 0.074 13.1 0.2 1.4 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily | Ref_seq=scaffold2047_contigs=22, transcript_loc=scaffold2047_contigs=22:49197-49439 Augustus predicted protein sequence Tobacco scaffold2047_contigs=22~49197-49439 Plant_NMP1 PF06694.6 g114158.t1 - 0.044 12.7 0 5.3 5.8 0 2 1 1 1 2 2 2 0 Plant nuclear matrix protein 1 (NMP1) | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:76368-76810 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~76368-76810 ATHILA PF03078.10 g78439.t1 - 0.064 11.8 0 0.066 11.7 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:63900-64244 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~63900-64244 PAT1 PF09770.4 g88199.t1 - 1.4 7 13.8 1.5 6.9 9.5 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:353980-354771 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~353980-354771 RVT_3 PF13456.1 g40846.t1 - 0.0053 16.4 0.1 0.0076 15.9 0.1 1.3 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:53436-53735 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~53436-53735 VEFS-Box PF09733.4 g29288.t1 - 4.5 6.9 4.6 0.82 9.3 0.1 1.9 2 0 0 2 2 2 0 VEFS-Box of polycomb protein | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:164913-165512 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~164913-165512 cwf18 PF08315.7 g22834.t1 - 0.015 15.7 0.9 0.018 15.5 0.6 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor | Ref_seq=scaffold625_contigs=3, transcript_loc=scaffold625_contigs=3:3636-3965 Augustus predicted protein sequence Tobacco scaffold625_contigs=3~3636-3965 Sec3-PIP2_bind PF15277.1 g1773.t1 - 0.055 13.3 0 0.14 11.9 0 1.6 2 0 0 2 2 2 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:135854-136749 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~135854-136749 FHIPEP PF00771.15 g4835.t1 - 0.024 12.9 0.4 0.031 12.6 0.1 1.2 1 1 0 1 1 1 0 FHIPEP family | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:150880-151621 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~150880-151621 MDM1 PF15501.1 g63969.t1 - 0.15 10.9 0.5 0.18 10.7 0.3 1 1 0 0 1 1 1 0 Nuclear protein MDM1 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:40215-40535 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~40215-40535 DUF4290 PF14123.1 g37178.t1 - 0.019 14.1 0.9 0.022 13.9 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold911_contigs=13, transcript_loc=scaffold911_contigs=13:17527-18145 Augustus predicted protein sequence Tobacco scaffold911_contigs=13~17527-18145 SPASM PF13186.1 g63272.t1 - 0.001 19.3 0 0.0015 18.8 0 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:93353-93631 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~93353-93631 YdjO PF14169.1 g49050.t1 - 0.012 15 0 0.021 14.2 0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:47524-49504 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~47524-49504 DUF1218 PF06749.7 g126221.t1 - 0.019 15.3 0.3 0.025 15 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1218) | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:86316-86883 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~86316-86883 Pepsin-I3 PF06394.8 g28571.t1 - 0.0063 16.1 0.1 0.013 15.1 0 1.6 1 0 0 1 1 1 1 Pepsin inhibitor-3-like repeated domain | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:213555-214169 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~213555-214169 RVP_2 PF08284.6 g33320.t1 - 0.0003 20.7 0 0.00031 20.7 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:37024-38773 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~37024-38773 DUF4351 PF14261.1 g103832.t1 - 0.16 11.8 0.6 0.96 9.3 0 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4351) | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:178050-178850 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~178050-178850 PsbP PF01789.11 g30214.t1 - 0.035 13.5 0 0.055 12.9 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:48605-49552 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~48605-49552 DUF3088 PF11287.3 g32555.t1 - 0.039 13.3 0 0.087 12.2 0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3088) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:358912-359590 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~358912-359590 Paramyx_P_V_C PF03210.8 g62298.t1 - 0.16 11.8 2.1 2.6 7.8 0.1 2.1 1 1 1 2 2 2 0 Paramyxovirus P/V phosphoprotein C-terminal | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:383848-386097 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~383848-386097 MtrB PF05440.7 g15608.t1 - 0.092 12.7 0.4 0.13 12.2 0 1.4 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:44084-44506 Augustus predicted protein sequence Tobacco scaffold501_contigs=2~44084-44506 DUF4219 PF13961.1 g63309.t1 - 0.014 14.7 0.1 0.024 14 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:197830-198159 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~197830-198159 Myb_DNA-bind_4 PF13837.1 g81315.t1 - 0.072 13.2 0.1 10 6.3 0 2.4 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:115957-116623 Augustus predicted protein sequence Tobacco scaffold1728_contigs=6~115957-116623 YdjO PF14169.1 g6343.t1 - 0.014 14.8 0.4 0.03 13.7 0 1.7 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold295_contigs=10, transcript_loc=scaffold295_contigs=10:60257-62235 Augustus predicted protein sequence Tobacco scaffold295_contigs=10~60257-62235 7tm_6 PF02949.15 g122080.t1 - 0.073 11.9 0.1 0.086 11.6 0 1.1 1 0 0 1 1 1 0 7tm Odorant receptor | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:184032-184597 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~184032-184597 zf-CCHC PF00098.18 g126380.t1 - 0.00019 21.1 1.1 0.00037 20.2 0.8 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:85566-86318 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~85566-86318 zf-Paramyx-P PF13008.2 g15777.t1 - 0.097 11.8 0.2 0.17 11 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding domain of Paramyxoviridae V protein | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:282496-282783 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~282496-282783 SR-25 PF10500.4 g116549.t1 - 0.00073 19 32.8 0.00075 19 22.7 1.1 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:373755-374147 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~373755-374147 ATHILA PF03078.10 g115768.t1 - 0.0000012 27.3 0 0.000015 23.8 0 1.9 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2662_contigs=2, transcript_loc=scaffold2662_contigs=2:59129-59707 Augustus predicted protein sequence Tobacco scaffold2662_contigs=2~59129-59707 GLTP PF08718.6 g36604.t1 - 0.054 13.5 0.6 0.07 13.1 0.4 1.1 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:86248-86607 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~86248-86607 Mpp10 PF04006.7 g85763.t1 - 1.8 6.8 16.7 2.1 6.5 11.6 1.1 1 0 0 1 1 1 0 Mpp10 protein | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:529983-530375 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~529983-530375 DUF2763 PF10961.3 g4307.t1 - 2.8 8.3 7.3 6.2 7.2 5.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2763) | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:72376-72612 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~72376-72612 zf-CCHC PF00098.18 g58715.t1 - 0.0023 17.7 0.4 0.0023 17.7 0.3 3 4 0 0 4 4 4 1 Zinc knuckle | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:545829-546074 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~545829-546074 DUF4614 PF15391.1 g32875.t1 - 0.65 9.7 3.7 0.72 9.5 2.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) | Ref_seq=scaffold823_contigs=8, transcript_loc=scaffold823_contigs=8:65390-65736 Augustus predicted protein sequence Tobacco scaffold823_contigs=8~65390-65736 DUF3659 PF12396.3 g45368.t1 - 0.069 12.8 0.2 0.12 12 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:321673-322871 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~321673-322871 p47_phox_C PF08944.6 g127410.t1 - 0.06 13.5 0.6 0.17 12 0.4 1.7 1 1 1 2 2 2 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold2824_contigs=1, transcript_loc=scaffold2824_contigs=1:19846-20331 Augustus predicted protein sequence Tobacco scaffold2824_contigs=1~19846-20331 Connexin_CCC PF10582.4 g103661.t1 - 0.12 12.1 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 Gap junction channel protein cysteine-rich domain | Ref_seq=scaffold2311_contigs=3, transcript_loc=scaffold2311_contigs=3:64835-65158 Augustus predicted protein sequence Tobacco scaffold2311_contigs=3~64835-65158 Tropomyosin PF00261.15 g67850.t1 - 0.16 10.9 2.3 0.15 11.1 1.6 1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1456_contigs=2, transcript_loc=scaffold1456_contigs=2:1-198 Augustus predicted protein sequence Tobacco scaffold1456_contigs=2~1-198 Tropomyosin PF00261.15 g71825.t1 - 0.02 13.9 0.2 0.024 13.7 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:168556-169038 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~168556-169038 PMD PF10536.4 g130211.t1 - 0.000075 21.8 0 0.000075 21.8 0 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold3660_contigs=1, transcript_loc=scaffold3660_contigs=1:675-953 Augustus predicted protein sequence Tobacco scaffold3660_contigs=1~675-953 AMP-binding_C PF13193.1 g36103.t1 - 0.0043 17.9 0.3 2.2 9.3 0 3.1 3 0 0 3 3 3 2 AMP-binding enzyme C-terminal domain | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:277912-278803 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~277912-278803 KH_2 PF07650.12 g117169.t1 - 0.0061 16 0.1 0.0089 15.5 0.1 1.2 1 0 0 1 1 1 1 KH domain | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:74903-75306 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~74903-75306 DUF1682 PF07946.9 g24850.t1 - 0.0031 16.4 0.3 0.0032 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:1-472 Augustus predicted protein sequence Tobacco scaffold679_contigs=3~1-472 Peptidase_C98 PF15499.1 g68940.t1 - 0.039 13.2 0 0.047 12.9 0 1.1 1 0 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:175475-176025 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~175475-176025 SPATIAL PF15256.1 g78090.t1 - 0.063 13.3 0.5 0.07 13.1 0.4 1.1 1 0 0 1 1 1 0 SPATIAL | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:392744-393768 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~392744-393768 DUF2207 PF09972.4 g35683.t1 - 0.048 12.2 0 0.059 11.9 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:77268-78182 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~77268-78182 PsbP PF01789.11 g15803.t1 - 0.11 11.8 0.1 0.48 9.8 0 1.9 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:339874-340854 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~339874-340854 Matrilin_ccoil PF10393.4 g129706.t1 - 0.028 13.7 0 0.044 13.1 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3029_contigs=1, transcript_loc=scaffold3029_contigs=1:3774-4295 Augustus predicted protein sequence Tobacco scaffold3029_contigs=1~3774-4295 Corona_nucleoca PF00937.13 g96924.t1 - 0.023 13.6 3.4 0.025 13.5 2.4 1.2 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:125905-127532 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~125905-127532 RNA_pol_Rpc4 PF05132.9 g15491.t1 - 4.1 7.3 6.6 6.7 6.7 4.4 1.5 1 1 0 1 1 1 0 RNA polymerase III RPC4 | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:460857-461213 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~460857-461213 Lysyl_oxidase PF01186.12 g60862.t1 - 0.073 12.6 0.2 0.076 12.6 0.1 1.1 1 0 0 1 1 1 0 Lysyl oxidase | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:402291-402593 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~402291-402593 DUF605 PF04652.11 g90237.t1 - 2 7.7 15.6 2.2 7.5 10.8 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:422325-423077 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~422325-423077 DUF1985 PF09331.6 g124117.t1 - 0.017 14.9 0 0.026 14.3 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1386171-1387115 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1386171-1387115 RRM PF10378.4 g69072.t1 - 1.2 8.8 0 1.2 8.8 0 2.8 3 0 0 3 3 3 0 Putative RRM domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:390827-391246 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~390827-391246 Virulence_fact PF13769.1 g101200.t1 - 0.16 11.8 1.3 0.28 11 0.9 1.6 1 1 0 1 1 1 0 Virulence factor | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:280068-280445 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~280068-280445 Frataxin_Cyay PF01491.11 g47230.t1 - 0.0053 16.5 0.2 0.0074 16 0.1 1.3 1 1 0 1 1 1 1 Frataxin-like domain | Ref_seq=scaffold1090_contigs=11, transcript_loc=scaffold1090_contigs=11:25886-26233 Augustus predicted protein sequence Tobacco scaffold1090_contigs=11~25886-26233 IP_trans PF02121.13 g115577.t1 - 0.0004 19.6 0.3 0.00043 19.5 0.2 1.1 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:677574-677876 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~677574-677876 CENP-B_dimeris PF09026.5 g72043.t1 - 2.5 8.4 9.8 3.2 8 6.8 1.2 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:169598-171315 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~169598-171315 DUF4661 PF15576.1 g68488.t1 - 0.043 13.4 0 0.058 13 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4661) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:225901-227666 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~225901-227666 CENP-O PF09496.5 g3237.t1 - 0.0058 16.8 0.1 0.0085 16.3 0.1 1.4 1 0 0 1 1 1 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:64411-64755 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~64411-64755 PaaSYMP PF14738.1 g37844.t1 - 4.2 7 19.7 4.4 6.9 13.7 1 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:114247-114471 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~114247-114471 Omega-toxin PF06357.6 g96796.t1 - 0.0085 15.6 0.4 0.0098 15.4 0.3 1.1 1 0 0 1 1 1 1 Omega-atracotoxin | Ref_seq=scaffold2121_contigs=3, transcript_loc=scaffold2121_contigs=3:1-569 Augustus predicted protein sequence Tobacco scaffold2121_contigs=3~1-569 DUF812 PF05667.6 g42233.t1 - 0.08 11.4 11.2 0.085 11.3 7.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:247852-248331 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~247852-248331 Hep_core_N PF08290.6 g128315.t1 - 0.069 12.5 0.2 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:41458-41955 Augustus predicted protein sequence Tobacco scaffold2861_contigs=1~41458-41955 LZ_Tnp_IS66 PF13007.2 g118481.t1 - 0.042 14.4 2.5 0.042 14.4 1.7 1.7 2 0 0 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:16802-17104 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~16802-17104 RinB PF06116.7 g44740.t1 - 0.05 13.2 0.8 0.078 12.5 0.6 1.3 1 0 0 1 1 1 0 Transcriptional activator RinB | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:187000-187296 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~187000-187296 zf-CCHC PF00098.18 g37638.t1 - 0.0015 18.3 0.9 0.0023 17.7 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:105189-105536 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~105189-105536 GerPB PF10803.3 g114709.t1 - 0.087 12.5 0.7 0.15 11.8 0.5 1.3 1 0 0 1 1 1 0 Spore germination GerPB | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:242908-243283 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~242908-243283 Ripply PF14998.1 g23897.t1 - 0.1 12.7 0 0.12 12.4 0 1.1 1 0 0 1 1 1 0 Transcription Regulator | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:331869-332135 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~331869-332135 XFP PF03894.10 g126766.t1 - 0.086 12.4 0.2 0.18 11.3 0.1 1.5 1 1 0 1 1 1 0 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase | Ref_seq=scaffold2804_contigs=1, transcript_loc=scaffold2804_contigs=1:11245-12015 Augustus predicted protein sequence Tobacco scaffold2804_contigs=1~11245-12015 DUF3924 PF13062.1 g114072.t1 - 0.041 13.7 0.1 0.071 12.9 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3924) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:189328-189673 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~189328-189673 AD PF09793.4 g8792.t1 - 0.058 13.2 0 0.076 12.8 0 1.2 1 0 0 1 1 1 0 Anticodon-binding domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:191997-192227 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~191997-192227 Glutaredoxin2_C PF04399.8 g57196.t1 - 0.0031 17 0.1 0.004 16.7 0 1.1 1 0 0 1 1 1 1 Glutaredoxin 2, C terminal domain | Ref_seq=scaffold1247_contigs=21, transcript_loc=scaffold1247_contigs=21:770361-770805 Augustus predicted protein sequence Tobacco scaffold1247_contigs=21~770361-770805 DUF3891 PF13030.1 g20664.t1 - 0.035 13.5 0 0.046 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3891) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:7183-9200 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~7183-9200 FBPase_2 PF06874.6 g25338.t1 - 0.00093 17.3 1.5 0.0012 17 1 1.1 1 0 0 1 1 1 1 Firmicute fructose-1,6-bisphosphatase | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:103411-103908 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~103411-103908 Propep_M14 PF02244.11 g126637.t1 - 0.1 12.3 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Carboxypeptidase activation peptide | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:61443-63160 Augustus predicted protein sequence Tobacco scaffold2801_contigs=1~61443-63160 ATHILA PF03078.10 g15584.t1 - 0.00013 20.7 0 0.00018 20.2 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:4172-4966 Augustus predicted protein sequence Tobacco scaffold501_contigs=2~4172-4966 P19Arf_N PF07392.7 g111649.t1 - 0.076 13.1 0.7 0.15 12.2 0.5 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:115466-116453 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~115466-116453 DUF4283 PF14111.1 g14210.t1 - 0.14 11.2 0 0.19 10.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold463_contigs=2, transcript_loc=scaffold463_contigs=2:27852-28839 Augustus predicted protein sequence Tobacco scaffold463_contigs=2~27852-28839 DUF1985 PF09331.6 g51177.t1 - 0.0000084 25.6 0 0.0000087 25.5 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:122870-123187 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~122870-123187 Bap31 PF05529.7 g110733.t1 - 0.045 13.2 2.5 0.071 12.5 1.7 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:339691-340809 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~339691-340809 DUF3281 PF11685.3 g4563.t1 - 0.091 11.9 0 0.11 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3281) | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:148338-148667 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~148338-148667 Rod_C PF10493.4 g40489.t1 - 0.00031 19.2 0 0.28 9.4 0 2 2 0 0 2 2 2 2 Rough deal protein C-terminal region | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:622-1329 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~622-1329 SUKH-4 PF14435.1 g93214.t1 - 0.0097 15.6 0 0.011 15.4 0 1.1 1 0 0 1 1 1 1 SUKH-4 immunity protein | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:108862-109251 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~108862-109251 HALZ PF02183.13 g104256.t1 - 0.098 12.3 0.6 0.21 11.2 0.4 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:318962-319402 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~318962-319402 Rod_cone_degen PF15201.1 g16834.t1 - 0.086 12.6 10.9 0.085 12.7 0.9 3.2 2 1 2 4 4 4 0 Progressive rod-cone degeneration | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:578573-580302 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~578573-580302 CCDC144C PF14915.1 g81402.t1 - 0.00005 22.3 9.8 0.000063 22 6.8 1.1 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:169456-169833 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~169456-169833 HNH_2 PF13391.1 g93559.t1 - 0.085 12.6 0.2 0.1 12.3 0.2 1.3 1 0 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:126020-126298 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~126020-126298 PA28_alpha PF02251.13 g46156.t1 - 0.032 14.4 0.1 0.055 13.6 0.1 1.5 1 1 0 1 1 1 0 Proteasome activator pa28 alpha subunit | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:314191-314951 Augustus predicted protein sequence Tobacco scaffold1055_contigs=9~314191-314951 Bile_Hydr_Trans PF04775.9 g45400.t1 - 0.02 14.5 0 0.027 14.2 0 1.3 1 0 0 1 1 1 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:374659-375435 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~374659-375435 ITAM PF02189.10 g75367.t1 - 0.14 12.4 0.1 0.23 11.8 0.1 1.4 1 0 0 1 1 1 0 Immunoreceptor tyrosine-based activation motif | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:242963-243343 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~242963-243343 DUF2890 PF11081.3 g112711.t1 - 0.84 9.6 4.3 1.5 8.8 3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:201427-202071 Augustus predicted protein sequence Tobacco scaffold2615_contigs=8~201427-202071 GIT_SHD PF08518.6 g8615.t1 - 0.13 11.6 0 0.56 9.6 0 2 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:388699-388908 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~388699-388908 ODV-E18 PF10717.4 g114729.t1 - 1.1 8.7 6.9 1.4 8.4 4.8 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 | Ref_seq=scaffold2655_contigs=13, transcript_loc=scaffold2655_contigs=13:19961-20170 Augustus predicted protein sequence Tobacco scaffold2655_contigs=13~19961-20170 Cation_efflux PF01545.16 g39111.t1 - 0.06 12.4 0 0.069 12.2 0 1.1 1 0 0 1 1 1 0 Cation efflux family | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:338991-339329 Augustus predicted protein sequence Tobacco scaffold948_contigs=6~338991-339329 PRCH PF03967.8 g27041.t1 - 0.051 13.1 0.2 0.11 12 0.1 1.5 1 1 0 1 1 1 0 Photosynthetic reaction centre, H-chain N-terminal region | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:789217-789628 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~789217-789628 DNA_pol_phi PF04931.8 g110135.t1 - 5.7 4.5 6.4 7.7 4.1 4.4 1.1 1 0 0 1 1 1 0 DNA polymerase phi | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:27230-27850 Augustus predicted protein sequence Tobacco scaffold2526_contigs=3~27230-27850 SPG48 PF14764.1 g128294.t1 - 0.084 11.3 0 0.1 11.1 0 1 1 0 0 1 1 1 0 AP-5 complex subunit, vesicle trafficking | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:13383-14114 Augustus predicted protein sequence Tobacco scaffold2861_contigs=1~13383-14114 DUF1401 PF07180.6 g28374.t1 - 0.048 13.4 0.3 0.06 13.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1401) | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:219941-220306 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~219941-220306 RVT_3 PF13456.1 g89311.t1 - 0.000026 23.9 0.3 0.000083 22.2 0.1 1.8 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:279002-279295 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~279002-279295 DUF3106 PF11304.3 g103555.t1 - 0.0017 18.7 1.4 0.021 15.2 0.9 2 1 1 0 1 1 1 1 Protein of unknown function (DUF3106) | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:42167-44282 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~42167-44282 Mei5 PF10376.4 g32726.t1 - 0.02 14.3 0.7 0.032 13.7 0.5 1.4 1 0 0 1 1 1 0 Double-strand recombination repair protein | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:774901-776046 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~774901-776046 Vmethyltransf_C PF08456.5 g15523.t1 - 0.027 13.8 0 0.037 13.4 0 1.1 1 0 0 1 1 1 0 Viral methyltransferase C-terminal | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:524368-524676 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~524368-524676 HTH_OrfB_IS605 PF12323.3 g58025.t1 - 0.076 12.3 0 0.15 11.4 0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:149634-152096 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~149634-152096 Baculo_11_kDa PF06143.6 g16211.t1 - 0.019 14.3 0.3 0.037 13.3 0.2 1.6 1 0 0 1 1 1 0 Baculovirus 11 kDa family | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:96550-98899 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~96550-98899 HALZ PF02183.13 g82314.t1 - 0.0046 16.6 7.2 0.0088 15.7 1.1 2.8 1 1 1 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:189828-190292 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~189828-190292 DUF3682 PF12446.3 g113244.t1 - 0.085 13.1 0.1 0.085 13.1 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3682) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:172304-172642 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~172304-172642 eIF-1a PF01176.14 g95982.t1 - 0.08 12.3 0 9.9 5.6 0 2.2 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:73847-74332 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~73847-74332 Tim54 PF11711.3 g101182.t1 - 2.2 6.7 5.8 2.4 6.6 4 1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:237182-237502 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~237182-237502 ATHILA PF03078.10 g112307.t1 - 1.9E-011 43.2 0.3 2.3E-011 42.9 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:56637-57056 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~56637-57056 SspB PF04386.8 g85786.t1 - 0.17 11.5 2.8 0.17 11.4 1.9 1.1 1 0 0 1 1 1 0 Stringent starvation protein B | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:573778-574014 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~573778-574014 RALF PF05498.6 g57776.t1 - 0.03 15.1 1.8 0.032 15 0.6 1.6 1 1 0 1 1 1 0 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold1260_contigs=17, transcript_loc=scaffold1260_contigs=17:43172-43516 Augustus predicted protein sequence Tobacco scaffold1260_contigs=17~43172-43516 Myosin_HC-like PF07058.6 g49114.t1 - 0.028 13.5 0.1 0.031 13.3 0.1 1.1 1 0 0 1 1 1 0 Myosin II heavy chain-like | Ref_seq=scaffold1113_contigs=8, transcript_loc=scaffold1113_contigs=8:14527-16664 Augustus predicted protein sequence Tobacco scaffold1113_contigs=8~14527-16664 BSP_II PF05432.6 g11863.t1 - 0.0087 15.3 7.4 0.009 15.3 5.2 1 1 0 0 1 1 1 1 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold416_contigs=9, transcript_loc=scaffold416_contigs=9:83084-84250 Augustus predicted protein sequence Tobacco scaffold416_contigs=9~83084-84250 Prp31_C PF09785.4 g54822.t1 - 0.0052 17.2 0.2 0.0065 16.8 0.2 1.1 1 0 0 1 1 1 1 Prp31 C terminal domain | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:519189-519617 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~519189-519617 zf-CCHC PF00098.18 g28465.t1 - 0.061 13.2 2 0.091 12.7 1.4 1.2 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:157573-157887 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~157573-157887 RNA_pol_A_bac PF01000.21 g110741.t1 - 0.049 13.7 0 0.069 13.3 0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:353256-355088 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~353256-355088 RVT_2 PF07727.9 g44511.t1 - 0.00014 20.9 0 0.00016 20.7 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:306919-307185 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~306919-307185 Mitofilin PF09731.4 g112642.t1 - 1.1 7.8 7.5 1.2 7.7 5.2 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein | Ref_seq=scaffold2614_contigs=14, transcript_loc=scaffold2614_contigs=14:6769-7719 Augustus predicted protein sequence Tobacco scaffold2614_contigs=14~6769-7719 Peptidase_S32 PF05579.8 g36463.t1 - 0.13 11.1 1.3 0.13 11.2 0.2 1.4 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:148-1259 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~148-1259 DUF1484 PF07363.6 g119631.t1 - 0.058 13.7 0.1 0.083 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1484) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:104811-105101 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~104811-105101 CCDC71L PF15374.1 g67335.t1 - 0.058 12.7 0 0.083 12.1 0 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 71L | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:62921-63202 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~62921-63202 Transposase_24 PF03004.9 g786.t1 - 0.000019 24.5 0.1 0.000033 23.7 0 1.5 1 1 0 1 1 1 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:43091-43768 Augustus predicted protein sequence Tobacco scaffold52_contigs=2~43091-43768 DUF869 PF05911.6 g63961.t1 - 0.0016 16.8 4.1 0.0017 16.7 2.9 1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:28453-28899 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~28453-28899 HALZ PF02183.13 g48728.t1 - 0.074 12.7 0.6 0.2 11.3 0.4 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:230706-231701 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~230706-231701 DUF2893 PF11459.3 g99837.t1 - 0.04 13.7 0.6 0.14 11.9 0.4 1.9 1 1 0 1 1 1 0 Protein of unknwon function (DUF2893) | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:108956-109540 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~108956-109540 Phage-MuB_C PF09077.6 g41919.t1 - 0.065 12.9 0.3 0.11 12.1 0.2 1.5 1 1 0 1 1 1 0 Mu B transposition protein, C terminal | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:232833-233410 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~232833-233410 FlaG PF03646.10 g92555.t1 - 0.023 14.8 1 54 3.9 0 3.4 3 0 0 3 3 3 0 FlaG protein | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:71443-72564 Augustus predicted protein sequence Tobacco scaffold1993_contigs=21~71443-72564 zf-CCHC PF00098.18 g112009.t1 - 0.00093 19 0.3 0.0017 18.1 0.2 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:46421-47122 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~46421-47122 HTH_CodY PF08222.6 g25426.t1 - 0.25 10.6 1.2 12 5.3 0.1 2.8 1 1 1 2 2 2 0 CodY helix-turn-helix domain | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:257495-259342 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~257495-259342 DUF3948 PF13134.1 g35031.t1 - 0.066 12.6 0 0.11 12 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3948) | Ref_seq=scaffold864_contigs=13, transcript_loc=scaffold864_contigs=13:418051-418898 Augustus predicted protein sequence Tobacco scaffold864_contigs=13~418051-418898 zf-BED PF02892.10 g27961.t1 - 0.013 15.2 0.7 0.013 15.2 0.5 1.9 2 1 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:668215-670212 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~668215-670212 Peptidase_S46 PF10459.4 g127565.t1 - 0.046 12.1 4.4 0.055 11.8 3.1 1.2 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:61130-62446 Augustus predicted protein sequence Tobacco scaffold2829_contigs=1~61130-62446 FAR1 PF03101.10 g92964.t1 - 0.00014 22.3 0 0.00025 21.5 0 1.4 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:348502-350559 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~348502-350559 Bim_N PF06773.6 g15301.t1 - 0.011 15.5 1.7 0.6 9.8 0.3 2.1 2 0 0 2 2 2 0 Bim protein N-terminus | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:99022-99237 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~99022-99237 Aa_trans PF01490.13 g101247.t1 - 0.051 12 0.2 0.046 12.1 0.1 1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:90424-90684 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~90424-90684 MAS20 PF02064.10 g68976.t1 - 0.0037 17.1 0.1 0.0053 16.6 0.1 1.2 1 0 0 1 1 1 1 MAS20 protein import receptor | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:237507-238950 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~237507-238950 zf-CCHC PF00098.18 g70646.t1 - 0.00037 20.2 0.6 0.00066 19.4 0.4 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:728310-729038 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~728310-729038 Cytochrom_B559 PF00283.14 g7752.t1 - 0.12 11.6 0.1 0.2 10.9 0 1.4 1 0 0 1 1 1 0 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:212072-212829 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~212072-212829 REV PF00424.13 g129515.t1 - 0.4 10.5 2.8 0.52 10.2 1.9 1.2 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) | Ref_seq=scaffold2971_contigs=1, transcript_loc=scaffold2971_contigs=1:6087-6666 Augustus predicted protein sequence Tobacco scaffold2971_contigs=1~6087-6666 DUF2274 PF10038.4 g53630.t1 - 0.039 14 0.2 11 6.1 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:135-749 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~135-749 Tim54 PF11711.3 g48755.t1 - 0.15 10.6 0 0.18 10.3 0 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:287455-287787 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~287455-287787 N-SET PF11764.3 g24804.t1 - 0.12 12.3 1.4 0.26 11.1 1 1.6 1 0 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component N | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:43552-44391 Augustus predicted protein sequence Tobacco scaffold677_contigs=5~43552-44391 RVT_3 PF13456.1 g92321.t1 - 0.0000015 27.8 0.1 0.0000018 27.6 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:276300-276503 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~276300-276503 CRISPR_assoc PF08798.6 g77428.t1 - 0.14 11.8 0.4 5.1 6.7 0 2.1 2 0 0 2 2 2 0 CRISPR associated protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:56053-57206 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~56053-57206 Fib_alpha PF08702.5 g57549.t1 - 0.018 15.1 1.1 0.021 14.9 0.8 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:137519-137970 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~137519-137970 Glycolytic PF00274.14 g94637.t1 - 0.12 10.7 0 0.12 10.7 0 1.1 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-I | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:215808-216044 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~215808-216044 YdjO PF14169.1 g115692.t1 - 0.027 13.9 0.1 0.052 12.9 0.1 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:56692-58639 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~56692-58639 Cyclase PF04199.8 g63979.t1 - 0.17 11.5 0.7 0.2 11.3 0.5 1.2 1 0 0 1 1 1 0 Putative cyclase | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:53417-54754 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~53417-54754 PAGK PF15284.1 g115131.t1 - 0.062 13 0 0.082 12.6 0 1.2 1 0 0 1 1 1 0 Phage-encoded virulence factor | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:71134-71853 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~71134-71853 SH3BP5 PF05276.9 g47176.t1 - 0.00041 19.7 2.4 0.00054 19.3 1.6 1.3 1 1 0 1 1 1 1 SH3 domain-binding protein 5 (SH3BP5) | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:192044-192513 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~192044-192513 UBN2 PF14223.1 g109249.t1 - 0.00084 19.1 0.5 0.0012 18.6 0.3 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:1980-2270 Augustus predicted protein sequence Tobacco scaffold2491_contigs=9~1980-2270 CENP-Q PF13094.1 g16217.t1 - 0.00097 19.1 2.1 0.0011 19 1.4 1.1 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:115312-115707 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~115312-115707 DUF568 PF04526.8 g50985.t1 - 0.027 14.7 0 0.03 14.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF568) | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:1009-1242 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~1009-1242 KAR9 PF08580.5 g12903.t1 - 0.0097 14.2 0.1 0.0098 14.2 0 1.1 1 0 0 1 1 1 1 Yeast cortical protein KAR9 | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:52146-52874 Augustus predicted protein sequence Tobacco scaffold436_contigs=4~52146-52874 zf-CCHC PF00098.18 g50505.t1 - 0.00071 19.3 1 0.0014 18.4 0.7 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:161005-162578 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~161005-162578 Vitelline_membr PF10542.4 g126895.t1 - 2.3 7.9 5.4 1.1 8.9 2.1 1.7 2 1 0 2 2 2 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold2807_contigs=1, transcript_loc=scaffold2807_contigs=1:78016-79482 Augustus predicted protein sequence Tobacco scaffold2807_contigs=1~78016-79482 DUF1117 PF06547.7 g115037.t1 - 0.0096 16 0.6 0.011 15.8 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1117) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:267092-267385 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~267092-267385 Imm33 PF15580.1 g22268.t1 - 0.011 15.1 0.2 0.45 10 0 2.2 1 1 1 2 2 2 0 Immunity protein 33 | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:142717-143190 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~142717-143190 GAS2 PF02187.12 g108985.t1 - 0.071 12.8 0 0.085 12.6 0 1.1 1 0 0 1 1 1 0 Growth-Arrest-Specific Protein 2 Domain | Ref_seq=scaffold2465_contigs=4, transcript_loc=scaffold2465_contigs=4:87511-87723 Augustus predicted protein sequence Tobacco scaffold2465_contigs=4~87511-87723 rve PF00665.21 g101146.t1 - 0.0031 17.6 0 0.0041 17.2 0 1.2 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:147352-148058 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~147352-148058 Toxin_33 PF08121.6 g67502.t1 - 0.34 10.5 0.4 0.34 10.5 0.3 2.2 2 0 0 2 2 2 0 Waglerin family | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:386839-387234 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~386839-387234 zf-CDGSH PF09360.5 g26432.t1 - 0.11 12.4 0 0.15 11.9 0 1.3 1 0 0 1 1 1 0 Iron-binding zinc finger CDGSH type | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:59983-60503 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~59983-60503 IncA PF04156.9 g117280.t1 - 0.11 12 2.4 0.2 11.1 1.7 1.4 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:48691-49588 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~48691-49588 MHCassoc_trimer PF08831.5 g15801.t1 - 0.034 13.9 0.5 0.062 13.1 0.3 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:339022-339348 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~339022-339348 Herpes_DNAp_acc PF04929.7 g23378.t1 - 0.27 10.1 3.3 0.3 10 2.3 1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor | Ref_seq=scaffold644_contigs=2, transcript_loc=scaffold644_contigs=2:16385-16774 Augustus predicted protein sequence Tobacco scaffold644_contigs=2~16385-16774 Calsequestrin PF01216.12 g59900.t1 - 0.034 12.9 0.1 0.046 12.4 0 1.1 1 0 0 1 1 1 0 Calsequestrin | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:113912-114388 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~113912-114388 DMPK_coil PF08826.5 g31402.t1 - 0.12 12.2 3.8 0.18 11.7 2.1 1.6 1 1 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:20352-21927 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~20352-21927 DUF4597 PF15366.1 g44533.t1 - 0.03 13.8 0 0.051 13.1 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4597) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:355762-356671 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~355762-356671 DUF1138 PF06592.8 g111605.t1 - 0.045 13.7 0.6 1.6 8.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1138) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:14374-15975 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~14374-15975 DUF4105 PF13387.1 g7132.t1 - 0.0059 15.7 0 0.0073 15.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4105) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:111094-111630 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~111094-111630 ATHILA PF03078.10 g1924.t1 - 0.00063 18.4 0 0.019 13.5 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:23856-24188 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~23856-24188 zf-CCHC PF00098.18 g69504.t1 - 0.043 13.7 5.3 0.069 13.1 3.7 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:232472-232726 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~232472-232726 Spore_III_AE PF09546.5 g77087.t1 - 0.066 12.1 0 0.08 11.8 0 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AE (spore_III_AE) | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:204320-204646 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~204320-204646 IFP_35_N PF07334.8 g128504.t1 - 0.029 14.3 2.9 0.029 14.3 0.7 2.1 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2872_contigs=1, transcript_loc=scaffold2872_contigs=1:36089-36439 Augustus predicted protein sequence Tobacco scaffold2872_contigs=1~36089-36439 Med12 PF09497.5 g89223.t1 - 0.029 14.3 0.3 0.17 11.8 0.2 2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:110571-110900 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~110571-110900 CheR_N PF03705.10 g25361.t1 - 0.068 12.5 0 0.11 11.9 0 1.4 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:144675-144920 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~144675-144920 DegS PF05384.6 g42467.t1 - 0.0052 16 0.7 0.0067 15.6 0.5 1.2 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:118993-119492 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~118993-119492 PsbX PF06596.6 g32781.t1 - 0.021 14.4 1.6 0.028 14.1 0.1 2 3 0 0 3 3 3 0 Photosystem II reaction centre X protein (PsbX) | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:20378-20846 Augustus predicted protein sequence Tobacco scaffold818_contigs=2~20378-20846 FH2 PF02181.18 g70128.t1 - 0.058 12.2 0.4 0.21 10.4 0.1 1.8 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:290630-291415 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~290630-291415 DUF1168 PF06658.7 g72308.t1 - 0.13 11.7 0 0.17 11.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:755423-755638 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~755423-755638 CENP-F_leu_zip PF10473.4 g72901.t1 - 0.059 13.2 4.6 0.48 10.2 0.3 2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:113618-113992 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~113618-113992 DUF2238 PF09997.4 g95156.t1 - 0.02 14.3 0 0.023 14 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:210640-211164 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~210640-211164 zf-CCHC PF00098.18 g101983.t1 - 0.000012 25 1.3 0.000019 24.3 0.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:240605-241357 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~240605-241357 UBN2 PF14223.1 g62923.t1 - 0.013 15.3 0.1 0.018 14.8 0.1 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:32312-32548 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~32312-32548 PHB_acc_N PF07879.6 g116187.t1 - 0.099 12.3 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:80958-81302 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~80958-81302 DUF3020 PF11223.3 g110604.t1 - 0.0031 17.8 0.7 0.0048 17.2 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3020) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:80189-80416 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~80189-80416 CAF-1_p150 PF11600.3 g36415.t1 - 0.0000086 25.2 18.4 0.0000087 25.2 12.8 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:46569-47099 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~46569-47099 BolA PF01722.13 g93722.t1 - 0.087 12.8 0.6 0.37 10.7 0.1 2 2 1 0 2 2 2 0 BolA-like protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:442535-443462 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~442535-443462 GP11 PF08677.5 g74674.t1 - 0.079 12.1 0 0.09 11.9 0 1.1 1 0 0 1 1 1 0 GP11 baseplate wedge protein | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:63181-63525 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~63181-63525 zf-CCHC PF00098.18 g81523.t1 - 0.000004 26.5 6.8 0.0000062 25.8 4.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:140017-140376 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~140017-140376 IF2_assoc PF08364.6 g63502.t1 - 0.64 10 2.8 11 6 0 3 3 1 1 4 4 4 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:79678-79926 Augustus predicted protein sequence Tobacco scaffold1375_contigs=5~79678-79926 Pox_A_type_inc PF04508.7 g25512.t1 - 0.00002 23.9 6 0.034 13.9 0 3.6 3 0 0 3 3 3 2 Viral A-type inclusion protein repeat | Ref_seq=scaffold698_contigs=2, transcript_loc=scaffold698_contigs=2:54460-54885 Augustus predicted protein sequence Tobacco scaffold698_contigs=2~54460-54885 RtxA PF07634.6 g112972.t1 - 2.7 8.4 8 0.17 12.1 1.4 2.2 2 0 0 2 2 2 0 RtxA repeat | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:43197-43559 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~43197-43559 KASH PF10541.4 g68707.t1 - 0.12 12.2 0.9 0.26 11.1 0.6 1.6 1 0 0 1 1 1 0 Nuclear envelope localisation domain | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:871169-871438 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~871169-871438 TEX19 PF15553.1 g17494.t1 - 1.6 8.5 5.1 1.9 8.3 3.5 1 1 0 0 1 1 1 0 Testis-expressed protein 19 | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:887594-888207 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~887594-888207 Orexin_rec2 PF03827.8 g93114.t1 - 0.038 14 1.4 0.87 9.6 0.2 2.3 2 0 0 2 2 2 0 Orexin receptor type 2 | Ref_seq=scaffold2007_contigs=8, transcript_loc=scaffold2007_contigs=8:79414-80137 Augustus predicted protein sequence Tobacco scaffold2007_contigs=8~79414-80137 zf-CCHC PF00098.18 g22472.t1 - 0.025 14.4 3.3 0.12 12.3 0.5 2.6 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:20196-20705 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~20196-20705 DBD_Tnp_Mut PF03108.10 g55209.t1 - 0.000000021 33.5 0.1 0.000000033 32.9 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:60765-61550 Augustus predicted protein sequence Tobacco scaffold1216_contigs=10~60765-61550 FadA PF09403.5 g115454.t1 - 0.45 10.5 3.2 0.5 10.3 2.2 1 1 0 0 1 1 1 0 Adhesion protein FadA | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:383004-383240 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~383004-383240 TMEM171 PF15471.1 g68482.t1 - 0.022 13.5 0.2 0.022 13.5 0.1 1.2 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:198686-200046 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~198686-200046 Stm1_N PF09598.5 g14379.t1 - 1.3 9.7 4 2.1 9.1 2.7 1.3 1 0 0 1 1 1 0 Stm1 | Ref_seq=scaffold473_contigs=14, transcript_loc=scaffold473_contigs=14:314084-314428 Augustus predicted protein sequence Tobacco scaffold473_contigs=14~314084-314428 DUF3245 PF11595.3 g109099.t1 - 0.065 13.5 0.9 0.069 13.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3245) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:1550-1819 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~1550-1819 Cwf_Cwc_15 PF04889.7 g112089.t1 - 0.00007 22.6 10.1 0.0001 22.1 7 1.3 1 0 0 1 1 1 1 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:132383-133090 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~132383-133090 ATHILA PF03078.10 g106669.t1 - 0.0000033 25.9 0 0.000019 23.4 0 1.8 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:334878-335894 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~334878-335894 Sif PF06767.6 g112401.t1 - 0.093 11.4 0.3 0.096 11.4 0.2 1.1 1 0 0 1 1 1 0 Sif protein | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:86517-86747 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~86517-86747 DUF4283 PF14111.1 g4653.t1 - 0.00013 21 0.4 0.0002 20.4 0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:144274-144717 Augustus predicted protein sequence Tobacco scaffold259_contigs=7~144274-144717 zf-piccolo PF05715.8 g95549.t1 - 0.046 13.7 0.1 17 5.5 0 2.7 2 1 0 2 2 2 0 Piccolo Zn-finger | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:24715-25707 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~24715-25707 Minor_capsid_3 PF12691.2 g110430.t1 - 0.0000051 26.2 0 20 4.8 0 5.8 3 2 3 6 6 6 2 Minor capsid protein from bacteriophage | Ref_seq=scaffold2544_contigs=13, transcript_loc=scaffold2544_contigs=13:1-5049 Augustus predicted protein sequence Tobacco scaffold2544_contigs=13~1-5049 DUF3445 PF11927.3 g40614.t1 - 0.079 12.3 0.1 0.099 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:149785-150102 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~149785-150102 Nop14 PF04147.7 g125756.t1 - 1.6 6.5 12.9 2 6.2 9 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:75157-77708 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~75157-77708 GCOM2 PF15328.1 g2802.t1 - 0.0043 16.8 7.4 0.0049 16.6 5.1 1.1 1 0 0 1 1 1 1 Putative GRINL1B complex locus protein 2 | Ref_seq=scaffold218_contigs=4, transcript_loc=scaffold218_contigs=4:170770-171422 Augustus predicted protein sequence Tobacco scaffold218_contigs=4~170770-171422 FAM104 PF15434.1 g68404.t1 - 0.012 15.8 1.2 0.016 15.4 0.8 1.2 1 0 0 1 1 1 0 Family 104 | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:47886-48248 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~47886-48248 FH2 PF02181.18 g92262.t1 - 0.0031 16.4 0 0.0036 16.2 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:159860-160306 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~159860-160306 RRS1 PF04939.7 g57366.t1 - 0.015 14.7 0.8 0.027 13.9 0.5 1.4 1 0 0 1 1 1 0 Ribosome biogenesis regulatory protein (RRS1) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:38644-39129 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~38644-39129 PAT1 PF09770.4 g84849.t1 - 5.7 5 10.1 6 4.9 7 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1828_contigs=4, transcript_loc=scaffold1828_contigs=4:71225-72696 Augustus predicted protein sequence Tobacco scaffold1828_contigs=4~71225-72696 Trefoil PF00088.13 g39145.t1 - 0.18 11.4 2.4 0.15 11.7 0.8 1.4 1 1 0 1 1 1 0 Trefoil (P-type) domain | Ref_seq=scaffold948_contigs=6, transcript_loc=scaffold948_contigs=6:480054-480359 Augustus predicted protein sequence Tobacco scaffold948_contigs=6~480054-480359 DUF1719 PF08224.6 g75313.t1 - 0.11 11.5 0.4 0.13 11.3 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:132864-133196 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~132864-133196 fn1 PF00039.13 g126755.t1 - 0.024 14.4 0.3 0.042 13.6 0.2 1.4 1 0 0 1 1 1 0 Fibronectin type I domain | Ref_seq=scaffold2804_contigs=1, transcript_loc=scaffold2804_contigs=1:1815-2549 Augustus predicted protein sequence Tobacco scaffold2804_contigs=1~1815-2549 RVP_2 PF08284.6 g109671.t1 - 0.000024 24.3 0.1 0.000032 23.8 0.1 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:268490-268963 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~268490-268963 NPV_P10 PF05531.7 g11584.t1 - 0.012 15.7 0.1 0.024 14.8 0.1 1.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold409_contigs=16, transcript_loc=scaffold409_contigs=16:182008-182247 Augustus predicted protein sequence Tobacco scaffold409_contigs=16~182008-182247 TOM20_plant PF06552.7 g45791.t1 - 0.11 12 0.1 0.18 11.3 0 1.4 1 1 0 1 1 1 0 Plant specific mitochondrial import receptor subunit TOM20 | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:68447-68686 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~68447-68686 Tropomyosin PF00261.15 g22675.t1 - 0.053 12.5 0.4 0.084 11.9 0.3 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:104144-104929 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~104144-104929 UnbV_ASPIC PF07593.7 g51054.t1 - 0.021 14.5 0.1 0.027 14.1 0.1 1.1 1 0 0 1 1 1 0 ASPIC and UnbV | Ref_seq=scaffold1149_contigs=12, transcript_loc=scaffold1149_contigs=12:275826-276050 Augustus predicted protein sequence Tobacco scaffold1149_contigs=12~275826-276050 Protamine_3 PF08188.6 g47427.t1 - 0.074 13 4.3 0.11 12.4 3 1.3 1 0 0 1 1 1 0 Spermatozal protamine family | Ref_seq=scaffold1098_contigs=4, transcript_loc=scaffold1098_contigs=4:50136-50438 Augustus predicted protein sequence Tobacco scaffold1098_contigs=4~50136-50438 DUF4657 PF15552.1 g68406.t1 - 0.037 13.3 3.7 0.041 13.1 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:49219-49536 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~49219-49536 DUF524 PF04411.7 g98154.t1 - 0.17 11.7 0 0.31 10.8 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF524) | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:26453-28331 Augustus predicted protein sequence Tobacco scaffold2154_contigs=6~26453-28331 Adaptin_binding PF10199.4 g28674.t1 - 0.0029 17.8 4.5 0.15 12.3 0.2 2.1 2 0 0 2 2 2 2 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:39901-40547 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~39901-40547 TIL PF01826.12 g71233.t1 - 0.011 15.8 3.6 0.013 15.6 2.5 1.1 1 0 0 1 1 1 0 Trypsin Inhibitor like cysteine rich domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:305903-306139 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~305903-306139 Ribosomal_S9 PF00380.14 g112198.t1 - 0.11 12.7 0.1 0.11 12.6 0 1.1 1 0 0 1 1 1 0 Ribosomal protein S9/S16 | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:205293-205812 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~205293-205812 Pentapeptide_4 PF13599.1 g68088.t1 - 0.12 12.1 0.1 13 5.6 0 2.2 2 0 0 2 2 2 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:85139-86290 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~85139-86290 Peptidase_M85 PF13678.1 g36130.t1 - 0.11 11.9 0.5 0.14 11.5 0.3 1.3 1 1 0 1 1 1 0 NFkB-p65-degrading zinc protease | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:327864-328504 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~327864-328504 DUF285 PF03382.9 g127277.t1 - 0.0034 16.9 0 0.0039 16.7 0 1.2 1 0 0 1 1 1 1 Mycoplasma protein of unknown function, DUF285 | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:16153-16377 Augustus predicted protein sequence Tobacco scaffold2818_contigs=1~16153-16377 DUF4290 PF14123.1 g44582.t1 - 0.11 11.6 0.3 0.19 10.9 0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:469787-470083 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~469787-470083 DBD_Tnp_Mut PF03108.10 g70909.t1 - 0.000000015 34 0.2 0.000000022 33.5 0.2 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1498_contigs=4, transcript_loc=scaffold1498_contigs=4:95900-96403 Augustus predicted protein sequence Tobacco scaffold1498_contigs=4~95900-96403 DUF2089 PF09862.4 g128136.t1 - 0.11 12.2 0 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) | Ref_seq=scaffold2851_contigs=1, transcript_loc=scaffold2851_contigs=1:41488-41751 Augustus predicted protein sequence Tobacco scaffold2851_contigs=1~41488-41751 Phage_integrase PF00589.17 g129857.t1 - 0.12 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:5410-5754 Augustus predicted protein sequence Tobacco scaffold3123_contigs=1~5410-5754 DUF2396 PF09654.5 g124089.t1 - 0.021 14.8 0 0.023 14.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1322153-1322602 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1322153-1322602 SAM_PNT PF02198.11 g38572.t1 - 0.07 12.8 0 0.094 12.4 0 1.2 1 0 0 1 1 1 0 Sterile alpha motif (SAM)/Pointed domain | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:110404-111409 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~110404-111409 DUF947 PF06102.7 g43942.t1 - 0.26 11.1 4.4 0.62 9.8 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF947) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:9638-10639 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~9638-10639 TcpF PF06340.6 g103998.t1 - 0.015 14.4 0 0.016 14.3 0 1.1 1 0 0 1 1 1 0 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:79271-80065 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~79271-80065 TT_ORF1 PF02956.9 g52271.t1 - 7.3 4.9 8.1 7.7 4.8 5.6 1 1 0 0 1 1 1 0 TT viral orf 1 | Ref_seq=scaffold1178_contigs=24, transcript_loc=scaffold1178_contigs=24:346308-348474 Augustus predicted protein sequence Tobacco scaffold1178_contigs=24~346308-348474 DUF4228 PF14009.1 g111296.t1 - 0.28 11.2 1.9 0.32 11.1 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4228) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:56544-56927 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~56544-56927 RVT_2 PF07727.9 g19283.t1 - 4.4E-010 38.9 1.3 0.00029 19.8 0.1 2.1 2 0 0 2 2 2 2 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold564_contigs=3, transcript_loc=scaffold564_contigs=3:13918-15000 Augustus predicted protein sequence Tobacco scaffold564_contigs=3~13918-15000 Lon_2 PF13337.1 g17076.t1 - 0.0055 15.1 0.1 0.0055 15.1 0 1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:408388-408600 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~408388-408600 BSP_II PF05432.6 g92332.t1 - 0.031 13.5 6.9 0.032 13.5 4.8 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:291273-291524 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~291273-291524 RasGAP PF00616.14 g45721.t1 - 0.017 14.7 0 0.018 14.7 0 1.2 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:454546-454779 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~454546-454779 XhlA PF10779.4 g114278.t1 - 0.026 14.4 0.1 0.036 13.9 0 1.2 1 0 0 1 1 1 0 Haemolysin XhlA | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:1561-1884 Augustus predicted protein sequence Tobacco scaffold2644_contigs=21~1561-1884 MYT1 PF08474.6 g104523.t1 - 0.073 12.5 0.1 0.23 10.9 0 1.7 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:404173-404607 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~404173-404607 CorA PF01544.13 g100488.t1 - 0.062 12.3 0 0.064 12.2 0 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:1363-1590 Augustus predicted protein sequence Tobacco scaffold2197_contigs=7~1363-1590 DUF2922 PF11148.3 g40858.t1 - 0.07 12.7 0 30 4.3 0 3 2 1 1 3 3 3 0 Protein of unknown function (DUF2922) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:12349-12894 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~12349-12894 YL1 PF05764.8 g121791.t1 - 0.18 11.3 1.8 0.2 11.2 1.3 1.1 1 0 0 1 1 1 0 YL1 nuclear protein | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:352841-353622 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~352841-353622 MCPsignal PF00015.16 g65385.t1 - 0.037 13.5 0 0.044 13.3 0 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:149071-149629 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~149071-149629 Trefoil PF00088.13 g100804.t1 - 0.34 10.5 4.8 0.52 9.9 3.3 1.4 1 1 0 1 1 1 0 Trefoil (P-type) domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:30802-31032 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~30802-31032 SEC-C PF02810.10 g112173.t1 - 0.022 14.2 2 5.3 6.6 0.1 2.5 2 0 0 2 2 2 0 SEC-C motif | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:149588-151139 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~149588-151139 APG9 PF04109.11 g109182.t1 - 0.097 11.5 0 0.13 11.1 0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg9 | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:281930-282661 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~281930-282661 TOH_N PF12549.3 g97007.t1 - 0.12 11.9 0.9 0.12 11.9 0.6 2.4 2 0 0 2 2 2 0 Tyrosine hydroxylase N terminal | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:308667-309295 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~308667-309295 DUF1199 PF06712.6 g11316.t1 - 0.071 12.9 0.8 0.1 12.4 0.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:179307-179567 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~179307-179567 DUF968 PF06147.6 g103577.t1 - 0.054 13.3 0 0.071 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF968) | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:74476-75189 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~74476-75189 YonK PF09642.5 g19517.t1 - 0.043 13.5 0.4 1.5 8.6 0.1 2.8 2 0 0 2 2 2 0 YonK protein | Ref_seq=scaffold569_contigs=9, transcript_loc=scaffold569_contigs=9:52632-53628 Augustus predicted protein sequence Tobacco scaffold569_contigs=9~52632-53628 Peptidase_S66 PF02016.10 g21787.t1 - 0.027 13.4 0 0.027 13.4 0 1.1 1 0 0 1 1 1 0 LD-carboxypeptidase | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:171423-171769 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~171423-171769 ATHILA PF03078.10 g42809.t1 - 0.0057 15.2 0 0.0064 15.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:618838-619074 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~618838-619074 Gly-rich_Ago1 PF12764.2 g23480.t1 - 0.049 14.2 0.4 0.056 14 0.2 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold648_contigs=4, transcript_loc=scaffold648_contigs=4:1-227 Augustus predicted protein sequence Tobacco scaffold648_contigs=4~1-227 CCDC66 PF15236.1 g118316.t1 - 0.31 10.6 3.9 0.35 10.4 2.7 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:365961-366347 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~365961-366347 DUF4154 PF13689.1 g95258.t1 - 0.032 13.8 0.1 0.04 13.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4154) | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:468074-468433 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~468074-468433 LLC1 PF14945.1 g19574.t1 - 0.075 13.3 0.1 0.089 13.1 0.1 1.1 1 0 0 1 1 1 0 Normal lung function maintenance, Low in Lung Cancer 1 protein | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:51087-51856 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~51087-51856 DUF4460 PF14687.1 g24520.t1 - 0.0084 15.8 2.3 0.0084 15.8 1.6 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4460) | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:171311-171915 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~171311-171915 Med27 PF11571.3 g56559.t1 - 0.01 15.9 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Mediator complex subunit 27 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:374876-375419 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~374876-375419 Seadorna_VP6 PF07407.6 g28809.t1 - 0.008 14.9 0.2 0.01 14.6 0.1 1 1 0 0 1 1 1 1 Seadornavirus VP6 protein | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:338465-339146 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~338465-339146 ATHILA PF03078.10 g42552.t1 - 0.000015 23.8 0 0.00002 23.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:52854-54227 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~52854-54227 RVT_2 PF07727.9 g88759.t1 - 0.0000026 26.5 0 0.0000045 25.8 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:53613-55432 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~53613-55432 MetJ PF01340.15 g115318.t1 - 0.12 12.1 0.2 0.27 11 0.2 1.7 1 1 0 1 1 1 0 Met Apo-repressor, MetJ | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:70902-71413 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~70902-71413 Asparaginase PF00710.15 g10598.t1 - 0.068 12 0 0.077 11.8 0 1.1 1 0 0 1 1 1 0 Asparaginase | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:339020-339619 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~339020-339619 PsaN PF05479.6 g101476.t1 - 0.077 12.9 0.6 0.13 12.2 0.2 1.6 2 0 0 2 2 2 0 Photosystem I reaction centre subunit N (PSAN or PSI-N) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:118758-119951 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~118758-119951 rve_3 PF13683.1 g117381.t1 - 0.036 13.5 0 0.12 11.9 0 1.7 2 0 0 2 2 2 0 Integrase core domain | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:29855-30073 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~29855-30073 RICTOR_N PF14664.1 g108290.t1 - 0.037 12.6 0 0.037 12.6 0 1 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, N-term | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:1240562-1240774 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~1240562-1240774 CCDC144C PF14915.1 g115721.t1 - 0.029 13.3 11.3 0.041 12.8 7.9 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:119564-120459 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~119564-120459 zf-CCHC PF00098.18 g69710.t1 - 0.00002 24.2 0.7 0.000032 23.6 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:963253-964331 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~963253-964331 DUF2457 PF10446.4 g127903.t1 - 0.00091 18 19.9 0.0013 17.5 13.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:22424-23320 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~22424-23320 DUF3363 PF11843.3 g86087.t1 - 0.065 11.8 1.7 0.073 11.6 1.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:158424-158804 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~158424-158804 YwhD PF08741.5 g40499.t1 - 0.051 12.9 0 0.053 12.9 0 1.1 1 0 0 1 1 1 0 YwhD family | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:22400-22742 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~22400-22742 IL31 PF15209.1 g64796.t1 - 0.04 13.5 0.3 5.6 6.5 0.1 2.1 1 1 1 2 2 2 0 Interleukin 31 | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:189266-189661 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~189266-189661 NAD_binding_7 PF13241.1 g27902.t1 - 0.093 12.9 0.2 0.15 12.3 0.2 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:551812-552606 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~551812-552606 PAS_8 PF13188.1 g69065.t1 - 0.12 12.2 0 0.31 10.9 0 1.8 1 1 0 1 1 1 0 PAS domain | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:384187-384693 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~384187-384693 GRP PF07172.6 g18408.t1 - 0.0057 17.1 3.2 0.0073 16.7 2.2 1.1 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold555_contigs=3, transcript_loc=scaffold555_contigs=3:37809-38624 Augustus predicted protein sequence Tobacco scaffold555_contigs=3~37809-38624 Mcm10 PF09332.6 g112574.t1 - 0.016 14.6 0.9 0.017 14.4 0.7 1 1 0 0 1 1 1 0 Mcm10 replication factor | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:222702-222929 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~222702-222929 EppA_BapA PF07268.6 g55071.t1 - 0.057 13 0 0.074 12.7 0 1.2 1 0 0 1 1 1 0 Exported protein precursor (EppA/BapA) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:499343-499961 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~499343-499961 DpnD-PcfM PF14207.1 g74402.t1 - 0.091 12.5 0 0.14 11.9 0 1.2 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:155802-156029 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~155802-156029 B3 PF02362.16 g52349.t1 - 0.13 11.9 0 0.15 11.7 0 1.2 1 0 0 1 1 1 0 B3 DNA binding domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:55307-55606 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~55307-55606 RsgI_N PF12791.2 g58490.t1 - 0.12 12 0 0.21 11.2 0 1.4 1 0 0 1 1 1 0 Anti-sigma factor N-terminus | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:146903-147319 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~146903-147319 OEP PF02321.13 g73665.t1 - 0.091 12.3 1.6 0.11 12.1 1.1 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:149629-149940 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~149629-149940 MT PF12777.2 g57754.t1 - 0.23 10.1 1.2 0.24 10 0.8 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor | Ref_seq=scaffold1259_contigs=1, transcript_loc=scaffold1259_contigs=1:68658-69403 Augustus predicted protein sequence Tobacco scaffold1259_contigs=1~68658-69403 Neisseria_TspB PF05616.8 g116044.t1 - 0.038 12.3 1.2 0.045 12.1 0.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:531430-531918 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~531430-531918 Inhibitor_Mig-6 PF11555.3 g50199.t1 - 6.8 7.1 13.3 0.15 12.4 2.6 2.3 2 0 0 2 2 2 0 EGFR receptor inhibitor Mig-6 | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:118682-118948 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~118682-118948 RAI16-like PF10257.4 g56788.t1 - 0.082 11.8 0 0.089 11.6 0 1.1 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:818291-819140 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~818291-819140 DUF2678 PF10856.3 g111324.t1 - 0.2 11.4 3.5 0.22 11.2 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2678) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:105420-106457 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~105420-106457 Toxin_2 PF00451.14 g111539.t1 - 1 9.5 6.3 2.8 8.1 0.3 2.6 3 0 0 3 3 3 0 Scorpion short toxin, BmKK2 | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:921044-921376 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~921044-921376 DUF3686 PF12458.3 g42536.t1 - 0.0096 14.2 0.6 0.0096 14.2 0.4 1 1 0 0 1 1 1 1 ATPase involved in DNA repair | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:17611-17887 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~17611-17887 Corona_5a PF06336.6 g92841.t1 - 0.12 12.2 0 0.2 11.5 0 1.3 1 0 0 1 1 1 0 Coronavirus 5a protein | Ref_seq=scaffold1997_contigs=2, transcript_loc=scaffold1997_contigs=2:18549-18875 Augustus predicted protein sequence Tobacco scaffold1997_contigs=2~18549-18875 DUF3565 PF12088.3 g15107.t1 - 0.14 11.9 0 0.18 11.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3565) | Ref_seq=scaffold489_contigs=6, transcript_loc=scaffold489_contigs=6:2600-2812 Augustus predicted protein sequence Tobacco scaffold489_contigs=6~2600-2812 DNAP_B_exo_N PF08452.5 g59383.t1 - 0.63 9.3 4 12 5.2 0.1 2.8 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:25795-26061 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~25795-26061 CarbpepA_inh PF02977.10 g12127.t1 - 0.07 12.7 0.2 0.12 11.9 0.2 1.3 1 0 0 1 1 1 0 Carboxypeptidase A inhibitor | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:22608-22859 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~22608-22859 DUF1985 PF09331.6 g83988.t1 - 5.5E-009 35.9 0 0.000021 24.3 0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:269639-270485 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~269639-270485 PSRT PF07636.6 g21112.t1 - 0.24 10.8 1.7 0.27 10.7 0.1 1.9 2 0 0 2 2 2 0 PSRT | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:490591-492435 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~490591-492435 Calsarcin PF05556.6 g111637.t1 - 0.065 12.4 1.4 0.093 11.9 1 1.2 1 0 0 1 1 1 0 Calcineurin-binding protein (Calsarcin) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:98624-99554 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~98624-99554 SAYSvFN PF10260.4 g22244.t1 - 0.062 13 0.6 0.078 12.7 0.1 1.4 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:67867-68121 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~67867-68121 DUF2973 PF11189.3 g110235.t1 - 0.21 11.3 1.1 2.3 8 0.1 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2973) | Ref_seq=scaffold2537_contigs=5, transcript_loc=scaffold2537_contigs=5:12582-12983 Augustus predicted protein sequence Tobacco scaffold2537_contigs=5~12582-12983 QLQ PF08880.6 g5165.t1 - 0.88 9 4.2 9.2 5.7 0.7 2.5 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:48915-49292 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~48915-49292 PRCC PF10253.4 g68176.t1 - 0.079 13.6 0.2 0.11 13.1 0.1 1.3 1 1 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:285493-287574 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~285493-287574 RVT_2 PF07727.9 g91280.t1 - 0.018 14 0 0.025 13.5 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:237108-239259 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~237108-239259 Ammonium_transp PF00909.16 g67175.t1 - 0.039 12.4 0.6 0.047 12.1 0.4 1.1 1 0 0 1 1 1 0 Ammonium Transporter Family | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:676166-676951 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~676166-676951 Packaging_FI PF14000.1 g126608.t1 - 0.035 14.3 3.8 0.042 14 2.6 1.2 1 0 0 1 1 1 0 DNA packaging protein FI | Ref_seq=scaffold2800_contigs=1, transcript_loc=scaffold2800_contigs=1:37558-37917 Augustus predicted protein sequence Tobacco scaffold2800_contigs=1~37558-37917 PRESAN PF09687.5 g61897.t1 - 0.014 15.4 0.3 0.017 15.1 0.2 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:10787-11056 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~10787-11056 Fork_head_N PF08430.7 g63344.t1 - 0.093 13.1 0.4 0.11 12.8 0.3 1.1 1 0 0 1 1 1 0 Forkhead N-terminal region | Ref_seq=scaffold1372_contigs=4, transcript_loc=scaffold1372_contigs=4:47933-48271 Augustus predicted protein sequence Tobacco scaffold1372_contigs=4~47933-48271 MtmB PF05369.7 g9303.t1 - 0.13 10.4 0 0.13 10.3 0 1 1 0 0 1 1 1 0 Monomethylamine methyltransferase MtmB | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:127292-127960 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~127292-127960 HTH_20 PF12840.2 g46548.t1 - 0.021 14.6 0.2 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:89424-90935 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~89424-90935 RNA_pol_Rpc4 PF05132.9 g44863.t1 - 0.038 13.9 11.6 0.23 11.4 1.1 2.2 2 0 0 2 2 2 0 RNA polymerase III RPC4 | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:71164-72180 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~71164-72180 DUF566 PF04484.7 g128431.t1 - 0.22 11 1.6 0.28 10.6 0.1 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF566) | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:35233-35702 Augustus predicted protein sequence Tobacco scaffold2867_contigs=1~35233-35702 Shisa PF13908.1 g22341.t1 - 0.54 10.4 4.6 0.3 11.2 0.9 1.9 1 1 1 2 2 2 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold618_contigs=7, transcript_loc=scaffold618_contigs=7:43187-46532 Augustus predicted protein sequence Tobacco scaffold618_contigs=7~43187-46532 zf-CCHC PF00098.18 g114579.t1 - 0.0000033 26.7 1.4 0.0000033 26.7 1 1.9 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:79134-79361 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~79134-79361 Elong_Iki1 PF10483.4 g119824.t1 - 0.00059 19.2 3 0.00074 18.9 2.1 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:278365-278916 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~278365-278916 DUF1985 PF09331.6 g9175.t1 - 0.01 15.6 0 0.014 15.2 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:88143-89177 Augustus predicted protein sequence Tobacco scaffold353_contigs=4~88143-89177 RILP PF11461.3 g11100.t1 - 1.7 8.8 9.3 0.84 9.8 0.3 3.3 2 1 1 3 3 3 0 Rab interacting lysosomal protein | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:67907-69062 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~67907-69062 AMOP PF03782.12 g96422.t1 - 0.012 15.5 0.1 0.012 15.5 0.1 1 1 0 0 1 1 1 0 AMOP domain | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:171343-171716 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~171343-171716 Cm_res_leader PF08077.6 g67003.t1 - 1.8 8.4 3.7 4.4 7.2 2.6 1.6 1 0 0 1 1 1 0 Chloramphenicol resistance gene leader peptide | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:331145-331616 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~331145-331616 Mad3_BUB1_I PF08311.7 g45559.t1 - 0.047 13.4 0.1 0.06 13.1 0.1 1.2 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:144824-145285 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~144824-145285 Phage_integrase PF00589.17 g129852.t1 - 0.12 12 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:475-819 Augustus predicted protein sequence Tobacco scaffold3123_contigs=1~475-819 Cytidylate_kin2 PF13189.1 g42154.t1 - 0.0091 15.9 0.1 0.011 15.6 0 1.1 1 0 0 1 1 1 1 Cytidylate kinase-like family | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:165943-166926 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~165943-166926 YjcZ PF13990.1 g127595.t1 - 0.034 13.2 2.5 0.046 12.8 1.7 1.2 1 0 0 1 1 1 0 YjcZ-like protein | Ref_seq=scaffold2830_contigs=1, transcript_loc=scaffold2830_contigs=1:52697-54456 Augustus predicted protein sequence Tobacco scaffold2830_contigs=1~52697-54456 DUF4628 PF15429.1 g21998.t1 - 0.023 14.1 2.1 0.029 13.8 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4628) | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:70652-71104 Augustus predicted protein sequence Tobacco scaffold607_contigs=8~70652-71104 DUF755 PF05501.6 g54960.t1 - 0.09 12.8 7 1.8 8.6 6 2 2 0 0 2 2 2 0 Domain of unknown function (DUF755) | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:232849-233625 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~232849-233625 RunxI PF08504.6 g65966.t1 - 0.0069 16.8 0.4 0.012 16 0.3 1.4 1 0 0 1 1 1 1 Runx inhibition domain | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:16191-17088 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~16191-17088 FH2 PF02181.18 g114576.t1 - 0.0056 15.6 0 0.0056 15.6 0 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:74012-74287 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~74012-74287 AF-4 PF05110.8 g16372.t1 - 0.04 11.8 5.2 0.039 11.8 3.6 1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein | Ref_seq=scaffold513_contigs=3, transcript_loc=scaffold513_contigs=3:101886-102260 Augustus predicted protein sequence Tobacco scaffold513_contigs=3~101886-102260 DUF690 PF05108.8 g70697.t1 - 0.084 11.2 0 0.086 11.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF690) | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:4917-5138 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~4917-5138 RNA_pol_3_Rpc31 PF11705.3 g112953.t1 - 2 8.2 9.4 2 8.2 6.5 1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:1-123 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~1-123 P53_tetramer PF07710.6 g82207.t1 - 0.032 13.3 0 0.054 12.6 0 1.3 1 0 0 1 1 1 0 P53 tetramerisation motif | Ref_seq=scaffold1741_contigs=2, transcript_loc=scaffold1741_contigs=2:72854-73201 Augustus predicted protein sequence Tobacco scaffold1741_contigs=2~72854-73201 M20_dimer PF07687.9 g34221.t1 - 0.046 13.4 0.1 0.22 11.3 0 2 2 0 0 2 2 2 0 Peptidase dimerisation domain | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:56367-57527 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~56367-57527 DUF1985 PF09331.6 g5362.t1 - 0.0066 16.2 0 0.008 15.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:95207-97099 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~95207-97099 DUF1427 PF07235.6 g108342.t1 - 0.071 13.2 0 0.078 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1427) | Ref_seq=scaffold2436_contigs=4, transcript_loc=scaffold2436_contigs=4:7252-7473 Augustus predicted protein sequence Tobacco scaffold2436_contigs=4~7252-7473 HflK_N PF12221.3 g24192.t1 - 0.13 12 0.6 0.27 10.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial membrane protein N terminal | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:122109-122544 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~122109-122544 zf-BED PF02892.10 g617.t1 - 0.032 14 0.6 0.053 13.2 0.1 1.6 2 0 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:19583-19813 Augustus predicted protein sequence Tobacco scaffold36_contigs=4~19583-19813 UTP15_C PF09384.5 g113519.t1 - 0.0054 16.4 0.4 0.0066 16.1 0.2 1.2 1 1 0 1 1 1 1 UTP15 C terminal | Ref_seq=scaffold2634_contigs=4, transcript_loc=scaffold2634_contigs=4:18439-18788 Augustus predicted protein sequence Tobacco scaffold2634_contigs=4~18439-18788 CfAFP PF05264.6 g34711.t1 - 0.12 12.1 0.4 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 Choristoneura fumiferana antifreeze protein (CfAFP) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:147734-148021 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~147734-148021 Vitelline_membr PF10542.4 g64076.t1 - 1.3 8.7 4.5 0.24 11 0.7 1.6 2 0 0 2 2 2 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:281284-281631 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~281284-281631 BORG_CEP PF14957.1 g107787.t1 - 4.4 8.2 9.9 1.3 9.9 4.4 1.8 1 1 1 2 2 2 0 Cdc42 effector | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:113345-114530 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~113345-114530 Claudin_2 PF13903.1 g23236.t1 - 0.014 15.1 1.4 0.016 14.8 1 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:60958-61356 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~60958-61356 BAT2_N PF07001.6 g122918.t1 - 0.025 14.9 0.1 0.033 14.5 0.1 1.2 1 0 0 1 1 1 0 BAT2 N-terminus | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:123418-125055 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~123418-125055 ATHILA PF03078.10 g109496.t1 - 0.000000032 32.5 0 0.00032 19.4 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:106787-107738 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~106787-107738 SNAPc19 PF15497.1 g88208.t1 - 0.039 14.1 4.1 2.5 8.3 0.2 2.1 1 1 1 2 2 2 0 snRNA-activating protein complex subunit 19, SNAPc subunit 19 | Ref_seq=scaffold1919_contigs=3, transcript_loc=scaffold1919_contigs=3:749-1468 Augustus predicted protein sequence Tobacco scaffold1919_contigs=3~749-1468 UBN2_3 PF14244.1 g7847.t1 - 0.0064 16 0.1 0.35 10.4 0 2 2 0 0 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:77854-78252 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~77854-78252 Ribosomal_L35p PF01632.14 g61357.t1 - 0.095 12.6 0 0.18 11.7 0 1.5 1 1 0 1 1 1 0 Ribosomal protein L35 | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:47523-50174 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~47523-50174 DUF1883 PF08980.5 g123199.t1 - 0.076 12.5 0 0.11 12 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1883) | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:72187-72709 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~72187-72709 AAA_33 PF13671.1 g104621.t1 - 0.17 11.7 1.5 0.2 11.5 1.1 1 1 0 0 1 1 1 0 AAA domain | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:207064-207291 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~207064-207291 A2M PF00207.17 g87034.t1 - 0.025 14.1 0.2 8.1 6.1 0.1 2.5 2 1 0 2 2 2 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1865_contigs=13, transcript_loc=scaffold1865_contigs=13:5484-5927 Augustus predicted protein sequence Tobacco scaffold1865_contigs=13~5484-5927 DUF716 PF04819.7 g116255.t1 - 0.027 13.8 0.7 0.03 13.7 0.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF716) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:290309-290641 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~290309-290641 Vir_act_alpha_C PF10400.4 g68198.t1 - 0.043 14.1 0.2 0.063 13.6 0 1.4 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:339885-340166 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~339885-340166 FISNA PF14484.1 g40572.t1 - 0.045 13.7 0 0.063 13.2 0 1.3 1 0 0 1 1 1 0 Fish-specific NACHT associated domain | Ref_seq=scaffold979_contigs=3, transcript_loc=scaffold979_contigs=3:34208-34561 Augustus predicted protein sequence Tobacco scaffold979_contigs=3~34208-34561 FA PF08736.6 g72054.t1 - 0.032 14 0.1 0.057 13.2 0.1 1.4 1 0 0 1 1 1 0 FERM adjacent (FA) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:190030-190624 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~190030-190624 RVT_3 PF13456.1 g123958.t1 - 0.11 12.2 0 0.13 12 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:986258-986558 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~986258-986558 FoP_duplication PF13865.1 g14137.t1 - 0.75 10.2 7.6 1.3 9.5 5.3 1.4 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:148415-148693 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~148415-148693 TruB_N PF01509.13 g106198.t1 - 0.0079 16.3 0 0.0093 16.1 0 1.1 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:98463-99283 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~98463-99283 Nup_retrotrp_bd PF10599.4 g38680.t1 - 2.5 8.7 6.1 0.2 12.2 0.5 2 2 0 0 2 2 2 0 Retro-transposon transporting motif | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:352300-353634 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~352300-353634 Prok-RING_2 PF14445.1 g34509.t1 - 0.042 13.8 2.8 0.077 12.9 1.6 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:184115-184966 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~184115-184966 HR1 PF02185.11 g4313.t1 - 0.093 12.4 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:84734-85003 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~84734-85003 zf-CCHC_4 PF14392.1 g95697.t1 - 0.012 15.2 1.1 0.023 14.3 0.8 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:123090-124082 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~123090-124082 Cep57_CLD_2 PF14197.1 g115967.t1 - 0.0074 16.2 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:194541-196201 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~194541-196201 CTV_P6 PF06706.6 g70010.t1 - 0.025 14 0 0.04 13.4 0 1.2 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:80295-80555 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~80295-80555 Leader_CPA1 PF08252.6 g87146.t1 - 0.13 11.5 1.3 0.24 10.6 0 1.9 2 0 0 2 2 2 0 arg-2/CPA1 leader peptide | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:202535-202756 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~202535-202756 A1_Propeptide PF07966.7 g114904.t1 - 0.017 14.9 0.2 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 A1 Propeptide | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:314172-314846 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~314172-314846 VGCC_beta4Aa_N PF12052.3 g36633.t1 - 0.016 15 0.3 0.016 15 0.2 1.6 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:154520-154918 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~154520-154918 Phage_Gp23 PF10669.4 g29508.t1 - 0.014 15.5 4 0.018 15.1 2.8 1.3 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:82962-83243 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~82962-83243 ATP-synt_ab_N PF02874.18 g9066.t1 - 0.0022 18.1 0.3 0.0038 17.4 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain | Ref_seq=scaffold352_contigs=11, transcript_loc=scaffold352_contigs=11:45901-48429 Augustus predicted protein sequence Tobacco scaffold352_contigs=11~45901-48429 TraV PF09676.5 g83748.t1 - 1.4 9.6 6.8 0.68 10.6 3.1 1.8 1 1 1 2 2 2 0 Type IV conjugative transfer system lipoprotein (TraV) | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:159768-160898 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~159768-160898 UBN2 PF14223.1 g104323.t1 - 0.036 13.8 0.1 0.082 12.6 0 1.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:501135-501418 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~501135-501418 Trypan_PARP PF05887.6 g68808.t1 - 9.5 6 14.4 11 5.8 10 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:123659-123964 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~123659-123964 LBR_tudor PF09465.5 g92867.t1 - 0.04 13.5 0.3 0.15 11.6 0 1.9 2 0 0 2 2 2 0 Lamin-B receptor of TUDOR domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:34016-34364 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~34016-34364 DUF1985 PF09331.6 g76373.t1 - 0.000019 24.4 0.1 0.000031 23.7 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:58389-58772 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~58389-58772 FlxA PF14282.1 g96383.t1 - 0.041 13.8 2 0.041 13.8 1.4 1.9 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:71098-71580 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~71098-71580 zf-CCHC PF00098.18 g125391.t1 - 0.000033 23.5 1 0.000063 22.7 0.7 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:15607-16368 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~15607-16368 DUF2045 PF09741.4 g14920.t1 - 0.095 11.8 0.2 0.098 11.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2045) | Ref_seq=scaffold484_contigs=2, transcript_loc=scaffold484_contigs=2:28035-28372 Augustus predicted protein sequence Tobacco scaffold484_contigs=2~28035-28372 P5CR_dimer PF14748.1 g79549.t1 - 0.026 14.5 0.1 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation | Ref_seq=scaffold1697_contigs=1, transcript_loc=scaffold1697_contigs=1:18382-18859 Augustus predicted protein sequence Tobacco scaffold1697_contigs=1~18382-18859 Glyoxalase_3 PF13468.1 g80482.t1 - 0.014 15.3 0 0.018 14.9 0 1.1 1 0 0 1 1 1 0 Glyoxalase-like domain | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:99134-99573 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~99134-99573 DUF2410 PF10307.4 g12595.t1 - 0.011 15.1 0 0.013 14.8 0 1 1 0 0 1 1 1 0 Hypothetical protein (DUF2410) | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:12660-13329 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~12660-13329 Transposase_28 PF04195.7 g54094.t1 - 0.04 13.2 0 0.055 12.7 0 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1198_contigs=3, transcript_loc=scaffold1198_contigs=3:17450-18266 Augustus predicted protein sequence Tobacco scaffold1198_contigs=3~17450-18266 DpnD-PcfM PF14207.1 g42676.t1 - 0.17 11.6 1.6 0.37 10.5 1.1 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:329688-330263 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~329688-330263 N1221 PF07923.8 g2123.t1 - 0.069 11.9 0 0.096 11.5 0 1.2 1 0 0 1 1 1 0 N1221-like protein | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:32404-32889 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~32404-32889 Telomere_Sde2 PF13019.1 g112044.t1 - 0.87 9.2 8.8 4.1 7 1 2.2 2 0 0 2 2 2 0 Telomere stability and silencing | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:27796-29655 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~27796-29655 Lumazine_bd PF12870.2 g85300.t1 - 0.093 12.7 0 0.12 12.4 0 1.1 1 0 0 1 1 1 0 Lumazine-binding domain | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:161872-162195 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~161872-162195 CHASE3 PF05227.8 g86604.t1 - 0.046 13.4 0.2 0.047 13.3 0.1 1 1 0 0 1 1 1 0 CHASE3 domain | Ref_seq=scaffold1852_contigs=2, transcript_loc=scaffold1852_contigs=2:64376-64582 Augustus predicted protein sequence Tobacco scaffold1852_contigs=2~64376-64582 IFRD PF05004.8 g42492.t1 - 0.001 18.2 0 1.1 8.2 0 2 2 0 0 2 2 2 2 Interferon-related developmental regulator (IFRD) | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:9589-10197 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~9589-10197 HOOK PF05622.7 g7927.t1 - 0.076 10.8 0.2 0.096 10.4 0.1 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:140426-141826 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~140426-141826 MHCassoc_trimer PF08831.5 g33610.t1 - 0.05 13.4 0.4 0.09 12.6 0.3 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:192294-192937 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~192294-192937 MitMem_reg PF13012.1 g1870.t1 - 0.018 15.1 3.8 0.021 14.8 2.6 1.1 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:89750-89980 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~89750-89980 HTH_44 PF14641.1 g98527.t1 - 0.12 12.3 0 0.13 12.2 0 1.1 1 0 0 1 1 1 0 Helix-turn-helix DNA-binding domain of SPT6 | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:64135-64855 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~64135-64855 Retrotrans_gag PF03732.12 g104588.t1 - 0.00057 19.8 0.3 0.00076 19.5 0.2 1.2 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:117018-117505 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~117018-117505 Oxidored_q4 PF00507.14 g99965.t1 - 0.066 13 0.1 0.09 12.5 0 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:78701-79718 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~78701-79718 DUF3534 PF12053.3 g89475.t1 - 0.044 13.6 0.1 0.057 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:3054-3410 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~3054-3410 DUF2116 PF09889.4 g78546.t1 - 0.41 10.4 2.9 0.57 10 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) | Ref_seq=scaffold1652_contigs=9, transcript_loc=scaffold1652_contigs=9:225708-226196 Augustus predicted protein sequence Tobacco scaffold1652_contigs=9~225708-226196 RVT_3 PF13456.1 g71164.t1 - 0.000032 23.6 0 0.000041 23.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:153932-154162 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~153932-154162 MG1 PF11974.3 g67962.t1 - 0.0048 17.4 0.4 0.0064 17 0.3 1.2 1 0 0 1 1 1 1 Alpha-2-macroglobulin MG1 domain | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:39289-39618 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~39289-39618 RVT_3 PF13456.1 g33389.t1 - 0.000057 22.8 0 0.000073 22.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:166940-167231 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~166940-167231 zf-BED PF02892.10 g125255.t1 - 0.085 12.6 0 0.17 11.7 0 1.5 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2770_contigs=1, transcript_loc=scaffold2770_contigs=1:1748-3965 Augustus predicted protein sequence Tobacco scaffold2770_contigs=1~1748-3965 X PF00739.14 g23170.t1 - 0.0099 15.7 0 0.01 15.7 0 1.1 1 0 0 1 1 1 1 Trans-activation protein X | Ref_seq=scaffold638_contigs=8, transcript_loc=scaffold638_contigs=8:29690-29959 Augustus predicted protein sequence Tobacco scaffold638_contigs=8~29690-29959 BACK PF07707.10 g58273.t1 - 0.061 13.1 0 0.078 12.8 0 1.1 1 0 0 1 1 1 0 BTB And C-terminal Kelch | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:505598-506191 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~505598-506191 IN_DBD_C PF00552.16 g112458.t1 - 0.046 13.1 0 0.11 11.9 0 1.6 1 0 0 1 1 1 0 Integrase DNA binding domain | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:78845-79308 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~78845-79308 CDC45 PF02724.9 g4414.t1 - 0.00036 18.7 13.3 0.00043 18.4 9.2 1.2 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:176858-178845 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~176858-178845 ATHILA PF03078.10 g30120.t1 - 0.004 15.8 0 0.004 15.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:496583-496876 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~496583-496876 DUF3251 PF11622.3 g87402.t1 - 0.074 12.4 0.4 0.65 9.3 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:3147-3521 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~3147-3521 Ycf1 PF05758.7 g46782.t1 - 0.64 7.6 22.1 0.73 7.4 15.3 1.3 1 0 0 1 1 1 0 Ycf1 | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:120073-120675 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~120073-120675 Herpes_DNAp_acc PF04929.7 g18527.t1 - 0.12 11.3 0.2 0.19 10.6 0 1.4 2 0 0 2 2 2 0 Herpes DNA replication accessory factor | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:158790-159167 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~158790-159167 Methyltrn_RNA_2 PF04013.7 g82316.t1 - 0.13 11.7 0 0.15 11.5 0 1 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:192500-192988 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~192500-192988 bZIP_2 PF07716.10 g66688.t1 - 0.1 12.4 0.2 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:413378-414221 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~413378-414221 bcl-2I13 PF12201.3 g52092.t1 - 0.049 13.1 0 0.077 12.4 0 1.3 1 1 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:370703-371370 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~370703-371370 RVP_2 PF08284.6 g83679.t1 - 0.000056 23 0 0.00008 22.5 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1801_contigs=9, transcript_loc=scaffold1801_contigs=9:160419-161078 Augustus predicted protein sequence Tobacco scaffold1801_contigs=9~160419-161078 NAD_binding_7 PF13241.1 g95220.t1 - 0.21 11.8 1.3 0.31 11.3 0.9 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:363883-366110 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~363883-366110 Rotamase PF00639.16 g73184.t1 - 0.013 16.1 0 0.016 15.9 0 1.1 1 0 0 1 1 1 0 PPIC-type PPIASE domain | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:7864-8154 Augustus predicted protein sequence Tobacco scaffold1532_contigs=5~7864-8154 Pox_VLTF3 PF04947.9 g127867.t1 - 0.075 12.5 0 0.075 12.5 0 1.1 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:9585-9815 Augustus predicted protein sequence Tobacco scaffold2840_contigs=1~9585-9815 CbiA PF01656.18 g94117.t1 - 0.056 12.8 0.1 0.073 12.4 0 1.1 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:343747-344316 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~343747-344316 MHCassoc_trimer PF08831.5 g117757.t1 - 0.051 13.4 1.1 0.066 13 0.7 1.2 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:15969-16319 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~15969-16319 Toxin_60 PF15607.1 g88552.t1 - 0.04 13.9 3 3.8 7.5 0.2 2.2 2 0 0 2 2 2 0 Putative toxin 60 | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:21401-22044 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~21401-22044 DUF2175 PF09943.4 g51685.t1 - 0.017 15.1 0 0.019 15 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) | Ref_seq=scaffold1163_contigs=2, transcript_loc=scaffold1163_contigs=2:11662-11919 Augustus predicted protein sequence Tobacco scaffold1163_contigs=2~11662-11919 Omega-toxin PF06357.6 g75576.t1 - 0.0024 17.3 0.2 0.005 16.3 0.2 1.5 1 0 0 1 1 1 1 Omega-atracotoxin | Ref_seq=scaffold1574_contigs=3, transcript_loc=scaffold1574_contigs=3:6831-7097 Augustus predicted protein sequence Tobacco scaffold1574_contigs=3~6831-7097 Tantalus PF15386.1 g103588.t1 - 0.069 12.9 0.2 0.17 11.6 0.1 1.6 1 1 1 2 2 2 0 Drosophila Tantalus-like | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:101624-101953 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~101624-101953 DUF3511 PF12023.3 g46181.t1 - 0.0047 16.2 0 0.0058 15.9 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3511) | Ref_seq=scaffold1057_contigs=2, transcript_loc=scaffold1057_contigs=2:1-605 Augustus predicted protein sequence Tobacco scaffold1057_contigs=2~1-605 PTS_EIIA_2 PF00359.17 g9829.t1 - 0.064 12.9 0.1 0.082 12.6 0.1 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:140604-140885 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~140604-140885 Macin PF14865.1 g88758.t1 - 0.12 12.4 0 0.18 11.9 0 1.2 1 0 0 1 1 1 0 Macin | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:52620-52862 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~52620-52862 HpaP PF09483.5 g25029.t1 - 2.5 7.9 10 3.6 7.5 6.9 1.2 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:112994-113410 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~112994-113410 CAF-1_p150 PF11600.3 g107750.t1 - 0.073 12.4 35.5 0.075 12.3 24.6 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:263944-264360 Augustus predicted protein sequence Tobacco scaffold2408_contigs=11~263944-264360 DUF3650 PF12368.3 g18218.t1 - 0.26 10.7 1.1 0.54 9.8 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) | Ref_seq=scaffold547_contigs=4, transcript_loc=scaffold547_contigs=4:146717-147281 Augustus predicted protein sequence Tobacco scaffold547_contigs=4~146717-147281 Gp58 PF07902.6 g9787.t1 - 0.11 10.6 0 0.13 10.4 0 1.1 1 0 0 1 1 1 0 gp58-like protein | Ref_seq=scaffold379_contigs=8, transcript_loc=scaffold379_contigs=8:210057-210368 Augustus predicted protein sequence Tobacco scaffold379_contigs=8~210057-210368 Glycohydro_20b2 PF14845.1 g57008.t1 - 0.87 10.2 4.6 1.4 9.5 3.2 1.4 1 1 0 1 1 1 0 beta-acetyl hexosaminidase like | Ref_seq=scaffold1245_contigs=4, transcript_loc=scaffold1245_contigs=4:28500-29265 Augustus predicted protein sequence Tobacco scaffold1245_contigs=4~28500-29265 DUF1392 PF07154.6 g86955.t1 - 0.085 12.7 0.1 0.35 10.7 0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1392) | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:231675-232350 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~231675-232350 Snurportin1 PF11538.3 g2143.t1 - 0.055 13.2 0.7 0.055 13.2 0.5 2 3 0 0 3 3 3 0 Snurportin1 | Ref_seq=scaffold202_contigs=3, transcript_loc=scaffold202_contigs=3:61960-64694 Augustus predicted protein sequence Tobacco scaffold202_contigs=3~61960-64694 DUF3640 PF12342.3 g68328.t1 - 0.16 11.4 0.2 0.33 10.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3640) | Ref_seq=scaffold1473_contigs=6, transcript_loc=scaffold1473_contigs=6:11127-11564 Augustus predicted protein sequence Tobacco scaffold1473_contigs=6~11127-11564 OAD_gamma PF04277.8 g84626.t1 - 0.36 11.2 1.4 0.65 10.4 0.9 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:103498-104017 Augustus predicted protein sequence Tobacco scaffold1824_contigs=4~103498-104017 SRR1 PF07985.7 g107727.t1 - 0.051 13.5 0 0.13 12.2 0 1.7 1 0 0 1 1 1 0 SRR1 | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:98461-99462 Augustus predicted protein sequence Tobacco scaffold2408_contigs=11~98461-99462 gag_pre-integrs PF13976.1 g47518.t1 - 0.054 13.1 0.1 0.089 12.4 0.1 1.5 1 0 0 1 1 1 0 GAG-pre-integrase domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:156917-158073 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~156917-158073 UBN2 PF14223.1 g14059.t1 - 0.0062 16.3 0 0.009 15.7 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:143015-143793 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~143015-143793 Neur_chan_memb PF02932.11 g73800.t1 - 0.00052 19.9 0.7 0.00064 19.6 0.5 1.2 1 0 0 1 1 1 1 Neurotransmitter-gated ion-channel transmembrane region | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:38861-40068 Augustus predicted protein sequence Tobacco scaffold1548_contigs=4~38861-40068 Cep57_MT_bd PF06657.8 g26533.t1 - 0.004 17 0.4 0.0087 15.9 0.3 1.6 1 0 0 1 1 1 1 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:12658-13032 Augustus predicted protein sequence Tobacco scaffold717_contigs=7~12658-13032 DUF4219 PF13961.1 g77175.t1 - 0.0029 16.9 0.3 0.0052 16.1 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:50945-51262 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~50945-51262 TALPID3 PF15324.1 g19754.t1 - 1.7 5.8 4.2 1.5 6 2.9 1 1 0 0 1 1 1 0 Hedgehog signalling target | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:340735-340938 Augustus predicted protein sequence Tobacco scaffold572_contigs=22~340735-340938 DUF4094 PF13334.1 g33344.t1 - 0.1 13 1.8 0.18 12.1 1.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:80868-82789 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~80868-82789 BID PF06393.6 g46029.t1 - 0.042 13.1 0.1 0.058 12.7 0.1 1.1 1 0 0 1 1 1 0 BH3 interacting domain (BID) | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:328713-329126 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~328713-329126 DUF4140 PF13600.1 g35539.t1 - 0.017 15.5 2.2 0.021 15.2 1.5 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:15861-16211 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~15861-16211 FoP_duplication PF13865.1 g75311.t1 - 2.9 8.3 6.4 4.4 7.8 4.4 1.3 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:131398-131661 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~131398-131661 MRJP PF03022.11 g83483.t1 - 0.072 12.2 0.4 3.3 6.8 0 2.7 1 1 2 3 3 3 0 Major royal jelly protein | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:90852-91253 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~90852-91253 DUF2594 PF10769.4 g82092.t1 - 0.084 12.9 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:649806-650132 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~649806-650132 HTH_8 PF02954.14 g103729.t1 - 0.0016 17.9 0 0.81 9.2 0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, Fis family | Ref_seq=scaffold2317_contigs=23, transcript_loc=scaffold2317_contigs=23:18617-18829 Augustus predicted protein sequence Tobacco scaffold2317_contigs=23~18617-18829 YaaC PF14175.1 g8518.t1 - 0.095 11.6 0.3 0.14 11.1 0.1 1.4 1 1 1 2 2 2 0 YaaC-like Protein | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:89185-89532 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~89185-89532 Mago-bind PF09282.5 g54256.t1 - 0.16 11.5 0.5 0.26 10.9 0.4 1.3 1 0 0 1 1 1 0 Mago binding | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:94969-95596 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~94969-95596 DUF4589 PF15252.1 g90303.t1 - 0.39 10.5 1.8 0.41 10.4 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4589) | Ref_seq=scaffold1960_contigs=6, transcript_loc=scaffold1960_contigs=6:25807-26142 Augustus predicted protein sequence Tobacco scaffold1960_contigs=6~25807-26142 LysR_substrate PF03466.15 g109100.t1 - 0.054 12.5 0 0.068 12.2 0 1.1 1 0 0 1 1 1 0 LysR substrate binding domain | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:4664-5932 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~4664-5932 IFP_35_N PF07334.8 g125819.t1 - 0.018 15 5.7 0.1 12.5 1.2 2.6 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2781_contigs=1, transcript_loc=scaffold2781_contigs=1:28354-28965 Augustus predicted protein sequence Tobacco scaffold2781_contigs=1~28354-28965 RR_TM4-6 PF06459.7 g69373.t1 - 0.23 11.3 3.3 0.23 11.3 2.3 1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:144929-145297 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~144929-145297 APG6 PF04111.7 g75479.t1 - 0.13 11.3 5.4 0.14 11.1 3.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:53025-53484 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~53025-53484 Toprim_Crpt PF13342.1 g99128.t1 - 0.096 12.3 0.1 15 5.2 0 2.4 2 0 0 2 2 2 0 C-terminal repeat of topoisomerase | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:91232-91648 Augustus predicted protein sequence Tobacco scaffold2170_contigs=8~91232-91648 EGF_2 PF07974.8 g31199.t1 - 0.18 11.9 1.9 0.29 11.3 1.3 1.3 1 0 0 1 1 1 0 EGF-like domain | Ref_seq=scaffold788_contigs=2, transcript_loc=scaffold788_contigs=2:1403-2370 Augustus predicted protein sequence Tobacco scaffold788_contigs=2~1403-2370 IGFBP PF00219.13 g46606.t1 - 1.2 9.7 5.7 1.7 9.2 3.9 1.3 1 1 0 1 1 1 0 Insulin-like growth factor binding protein | Ref_seq=scaffold1072_contigs=9, transcript_loc=scaffold1072_contigs=9:23544-23744 Augustus predicted protein sequence Tobacco scaffold1072_contigs=9~23544-23744 ATHILA PF03078.10 g111882.t1 - 0.000045 22.2 0 0.0035 15.9 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:29831-30208 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~29831-30208 Maf1 PF09174.5 g62939.t1 - 0.069 12.9 0 0.11 12.3 0 1.4 1 0 0 1 1 1 0 Maf1 regulator | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:65758-70017 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~65758-70017 zf-CCHC PF00098.18 g55963.t1 - 0.000054 22.9 0.5 0.00011 21.9 0.4 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:240586-241703 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~240586-241703 Nepo_coat_N PF03689.10 g21335.t1 - 0.12 12.1 0 0.17 11.5 0 1.2 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:145397-146756 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~145397-146756 DUF1151 PF06625.6 g36209.t1 - 0.016 14.9 0.3 0.52 10 0.1 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1151) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:525902-526189 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~525902-526189 LTXXQ PF07813.7 g123548.t1 - 0.0075 16.7 0.4 0.026 14.9 0.5 1.6 2 0 0 2 2 2 1 LTXXQ motif family protein | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:147443-148861 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~147443-148861 Reo_sigmaC PF04582.7 g54036.t1 - 0.0055 15.9 0.2 0.0072 15.5 0.2 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:75440-76390 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~75440-76390 HSBP1 PF06825.7 g32806.t1 - 1.4 8.5 4.6 16 5.1 0.1 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:40025-40631 Augustus predicted protein sequence Tobacco scaffold819_contigs=1~40025-40631 DUF2205 PF10224.4 g14147.t1 - 0.033 13.7 0.7 0.17 11.4 0.1 2 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:194674-195006 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~194674-195006 N_NLPC_P60 PF12912.2 g23191.t1 - 0.036 14.1 2.4 0.14 12.3 1.7 1.9 1 1 0 1 1 1 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:56687-59677 Augustus predicted protein sequence Tobacco scaffold639_contigs=2~56687-59677 DUF3347 PF11827.3 g82848.t1 - 0.13 12.2 2.6 0.18 11.7 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:73269-74008 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~73269-74008 Ribosomal_L18_c PF14204.1 g46584.t1 - 0.028 14.9 0.2 0.039 14.5 0.1 1.3 1 1 0 1 1 1 0 Ribosomal L18 C-terminal region | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:201634-202209 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~201634-202209 Uds1 PF15456.1 g104223.t1 - 0.078 12.9 2.4 0.092 12.7 1.7 1.1 1 0 0 1 1 1 0 Up-regulated During Septation | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:181647-181940 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~181647-181940 Arm PF00514.18 g13805.t1 - 0.048 13.5 0.2 2.9 7.8 0.1 2.3 2 0 0 2 2 2 0 Armadillo/beta-catenin-like repeat | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:124299-124577 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~124299-124577 Glyco_hydro_32C PF08244.7 g40734.t1 - 0.031 14.6 0 0.055 13.8 0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 32 C terminal | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:429297-430215 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~429297-430215 Cupredoxin_1 PF13473.1 g118551.t1 - 0.096 12.5 0.6 0.15 11.9 0.4 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:165757-166278 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~165757-166278 Vir_act_alpha_C PF10400.4 g9319.t1 - 0.0051 17.1 1.9 0.013 15.7 0.2 1.9 2 0 0 2 2 2 1 Virulence activator alpha C-term | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:157062-157427 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~157062-157427 CDC50 PF03381.10 g40199.t1 - 0.0089 15.2 0 0.011 14.9 0 1 1 0 0 1 1 1 1 LEM3 (ligand-effect modulator 3) family / CDC50 family | Ref_seq=scaffold970_contigs=2, transcript_loc=scaffold970_contigs=2:12934-13230 Augustus predicted protein sequence Tobacco scaffold970_contigs=2~12934-13230 UPF0054 PF02130.12 g32671.t1 - 0.016 14.4 0.1 5.1 6.3 0 2.2 1 1 1 2 2 2 0 Uncharacterized protein family UPF0054 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:653612-654238 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~653612-654238 Pneumo_ncap PF03246.8 g92386.t1 - 0.028 12.9 0 0.035 12.6 0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:449634-450002 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~449634-450002 H-kinase_dim PF02895.9 g114753.t1 - 0.022 15 0.2 0.027 14.7 0.1 1.2 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:53424-53810 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~53424-53810 DIM PF08194.7 g95404.t1 - 0.13 12.2 0.1 0.13 12.2 0.1 2.6 3 0 0 3 3 3 0 DIM protein | Ref_seq=scaffold2057_contigs=11, transcript_loc=scaffold2057_contigs=11:442853-443203 Augustus predicted protein sequence Tobacco scaffold2057_contigs=11~442853-443203 Corona_RPol_N PF06478.8 g106345.t1 - 0.071 11.7 0 0.09 11.4 0 1.1 1 0 0 1 1 1 0 Coronavirus RPol N-terminus | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:195894-196757 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~195894-196757 zf-CCHC PF00098.18 g110757.t1 - 0.00014 21.5 4.4 0.00023 20.9 3 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:400290-400650 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~400290-400650 UBN2 PF14223.1 g38261.t1 - 0.00022 20.9 0 0.00057 19.6 0 1.7 2 1 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:93116-93616 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~93116-93616 Peptidase_C14 PF00656.17 g16518.t1 - 0.074 12.7 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Caspase domain | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:8075-8631 Augustus predicted protein sequence Tobacco scaffold519_contigs=1~8075-8631 NRDE-2 PF08424.5 g106592.t1 - 0.01 14.7 0.1 0.013 14.4 0.1 1 1 0 0 1 1 1 0 NRDE-2, necessary for RNA interference | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:132059-133373 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~132059-133373 Man-6-P_recep PF02157.10 g47391.t1 - 0.075 12 0 0.075 12 0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate receptor | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:48363-48578 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~48363-48578 Transposase_22 PF02994.9 g22507.t1 - 0.064 11.7 0.1 0.069 11.6 0 1.2 1 0 0 1 1 1 0 L1 transposable element | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:172549-172812 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~172549-172812 Gag_MA PF01140.14 g121476.t1 - 0.022 14.6 0.2 0.025 14.4 0.1 1.1 1 0 0 1 1 1 0 Matrix protein (MA), p15 | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1410949-1411182 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1410949-1411182 RNA_pol_3_Rpc31 PF11705.3 g97365.t1 - 0.49 10.3 6.3 0.47 10.3 4.4 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:120640-120867 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~120640-120867 Motilin_assoc PF04643.7 g28604.t1 - 0.063 12.7 0.1 0.11 12 0 1.4 1 0 0 1 1 1 0 Motilin/ghrelin-associated peptide | Ref_seq=scaffold749_contigs=4, transcript_loc=scaffold749_contigs=4:10739-10984 Augustus predicted protein sequence Tobacco scaffold749_contigs=4~10739-10984 ArfGap PF01412.13 g10842.t1 - 0.00014 21.6 0 0.65 9.7 0 2.3 2 0 0 2 2 2 2 Putative GTPase activating protein for Arf | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:1-1142 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~1-1142 Rieske PF00355.21 g19779.t1 - 0.76 9.3 4.4 1.2 8.7 3 1.4 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain | Ref_seq=scaffold573_contigs=5, transcript_loc=scaffold573_contigs=5:1033-1317 Augustus predicted protein sequence Tobacco scaffold573_contigs=5~1033-1317 SLEI_Leptospira PF07620.6 g47100.t1 - 0.067 12.9 0 0.12 12.1 0 1.5 1 0 0 1 1 1 0 SLEI | Ref_seq=scaffold1087_contigs=6, transcript_loc=scaffold1087_contigs=6:16487-16708 Augustus predicted protein sequence Tobacco scaffold1087_contigs=6~16487-16708 DUF1693 PF07984.7 g73260.t1 - 0.13 11.4 0.2 0.18 10.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1693) | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:91986-92893 Augustus predicted protein sequence Tobacco scaffold1535_contigs=9~91986-92893 GP41 PF00517.12 g51278.t1 - 0.076 12.5 2.7 0.093 12.2 1.9 1.1 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:331192-331527 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~331192-331527 PsaD PF02531.11 g57987.t1 - 0.086 12 0 0.16 11.2 0 1.4 1 0 0 1 1 1 0 PsaD | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:53497-54543 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~53497-54543 VirB3 PF05101.8 g75423.t1 - 0.068 13.1 0.3 0.082 12.9 0.2 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:379480-379728 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~379480-379728 PsbP PF01789.11 g10291.t1 - 0.024 14 0 0.12 11.7 0 1.9 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:10959-11852 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~10959-11852 Glyoxalase_4 PF13669.1 g53316.t1 - 0.15 12.1 0.3 0.54 10.2 0 1.9 1 1 1 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:76865-77618 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~76865-77618 PTR PF12789.2 g26822.t1 - 0.082 12.7 1.1 0.16 11.8 0.3 1.9 2 0 0 2 2 2 0 Phage tail repeat like | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:364622-365150 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~364622-365150 Phospholip_A2_1 PF00068.14 g80413.t1 - 0.023 14.9 0.8 0.036 14.2 0.6 1.3 1 1 0 1 1 1 0 Phospholipase A2 | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:214037-214730 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~214037-214730 Endotoxin_M PF00555.14 g19382.t1 - 0.063 13.1 0.1 0.075 12.8 0.1 1.2 1 0 0 1 1 1 0 delta endotoxin | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:288830-289126 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~288830-289126 Trypan_PARP PF05887.6 g128413.t1 - 1.5 8.6 9.5 1.9 8.3 6.6 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2867_contigs=1, transcript_loc=scaffold2867_contigs=1:10130-10641 Augustus predicted protein sequence Tobacco scaffold2867_contigs=1~10130-10641 DUF743 PF05332.6 g24533.t1 - 0.059 13.3 0.3 0.082 12.8 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF743) | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:187935-189090 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~187935-189090 Adeno_PX PF05829.7 g71452.t1 - 0.094 12.2 1.7 1.7 8.1 0.2 2.2 2 0 0 2 2 2 0 Adenovirus late L2 mu core protein (Protein X) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:49849-50470 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~49849-50470 ELFV_dehydrog_N PF02812.13 g34660.t1 - 0.11 12 0 0.14 11.6 0 1.2 1 0 0 1 1 1 0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:24452-24808 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~24452-24808 KIF1B PF12423.3 g93776.t1 - 0.075 13 4.7 1.2 9.2 0.1 2.7 2 1 0 2 2 2 0 Kinesin protein 1B | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:18581-18877 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~18581-18877 Ribosomal_L5_C PF00673.16 g21060.t1 - 0.037 13.7 0.1 0.052 13.2 0.1 1.2 1 0 0 1 1 1 0 ribosomal L5P family C-terminus | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:358082-358339 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~358082-358339 DUF1091 PF06477.8 g70265.t1 - 0.039 14.3 0 0.16 12.3 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1091) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:183732-184076 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~183732-184076 CAP-ZIP_m PF15255.1 g56118.t1 - 0.077 12.9 4 0.08 12.8 2.8 1.3 1 1 0 1 1 1 0 WASH complex subunit CAP-Z interacting, central region | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:91880-92248 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~91880-92248 Lon_2 PF13337.1 g62358.t1 - 0.012 14 0.1 0.017 13.4 0.1 1.1 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease | Ref_seq=scaffold1347_contigs=2, transcript_loc=scaffold1347_contigs=2:1299-2183 Augustus predicted protein sequence Tobacco scaffold1347_contigs=2~1299-2183 Arch_fla_DE PF04659.8 g104989.t1 - 0.09 12.5 0 0.14 12 0 1.2 1 0 0 1 1 1 0 Archaeal flagella protein | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:43690-44034 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~43690-44034 ENOD93 PF03386.9 g11120.t1 - 0.12 12.1 0 0.19 11.4 0 1.3 1 0 0 1 1 1 0 Early nodulin 93 ENOD93 protein | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:137807-138267 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~137807-138267 ATHILA PF03078.10 g86063.t1 - 0.0072 14.9 0 0.0083 14.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:108931-109290 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~108931-109290 Flavodoxin_3 PF12641.2 g6265.t1 - 0.0014 18 0.3 0.0021 17.5 0.2 1.2 1 0 0 1 1 1 1 Flavodoxin domain | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:373298-373951 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~373298-373951 SEP PF08059.8 g83218.t1 - 0.00021 21.5 0.1 0.68 10.2 0 2.2 2 0 0 2 2 2 2 SEP domain | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:370147-370785 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~370147-370785 Imm44 PF15584.1 g112050.t1 - 0.0011 18.7 0.1 1.4 8.8 0 2.1 2 0 0 2 2 2 2 Immunity protein 44 | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:36536-37014 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~36536-37014 DUF869 PF05911.6 g71764.t1 - 0.0078 14.5 4.2 0.011 13.9 2.9 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:56688-59635 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~56688-59635 Serglycin PF04360.7 g52928.t1 - 0.27 10.9 1.2 0.25 11 0.9 1.2 1 0 0 1 1 1 0 Serglycin | Ref_seq=scaffold1183_contigs=24, transcript_loc=scaffold1183_contigs=24:1-114 Augustus predicted protein sequence Tobacco scaffold1183_contigs=24~1-114 TerD PF02342.13 g65057.t1 - 0.13 11.5 0.1 11 5.3 0 2.1 1 1 1 2 2 2 0 TerD domain | Ref_seq=scaffold1395_contigs=11, transcript_loc=scaffold1395_contigs=11:23689-24537 Augustus predicted protein sequence Tobacco scaffold1395_contigs=11~23689-24537 DUF2360 PF10152.4 g29807.t1 - 0.18 12.1 0.7 0.47 10.7 0.2 1.7 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:147534-147887 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~147534-147887 FoP_duplication PF13865.1 g72432.t1 - 4.6 7.7 9.6 6.2 7.3 6.7 1.2 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:1093580-1093807 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~1093580-1093807 Merozoite_SPAM PF07133.6 g53264.t1 - 2 8.3 7.9 2.5 7.9 5.5 1.3 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:141949-142449 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~141949-142449 Troponin-I_N PF11636.3 g36953.t1 - 0.027 14.1 1.3 0.051 13.2 0.9 1.5 1 0 0 1 1 1 0 Troponin I residues 1-32 | Ref_seq=scaffold905_contigs=2, transcript_loc=scaffold905_contigs=2:37343-37717 Augustus predicted protein sequence Tobacco scaffold905_contigs=2~37343-37717 SLX9 PF15341.1 g77067.t1 - 4.2 7.8 9.6 7.3 7 6.6 1.5 1 1 0 1 1 1 0 Ribosome biogenesis protein SLX9 | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:157825-158166 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~157825-158166 HALZ PF02183.13 g74971.t1 - 0.0035 17 3.4 0.049 13.3 0.2 2.3 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:194662-195156 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~194662-195156 HC2 PF07382.6 g34520.t1 - 0.0056 16.5 4.4 0.0061 16.4 3.1 1.1 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:19906-20181 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~19906-20181 UPF0051 PF01458.12 g56220.t1 - 0.05 13 0 0.078 12.4 0 1.3 1 1 0 1 1 1 0 Uncharacterized protein family (UPF0051) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:266151-266718 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~266151-266718 DUF4219 PF13961.1 g55740.t1 - 0.00011 21.4 0.3 0.00015 21 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:7489-7716 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~7489-7716 Trypan_PARP PF05887.6 g14169.t1 - 6 6.6 13.5 6.8 6.5 9.3 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:239347-239559 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~239347-239559 DUF4219 PF13961.1 g34583.t1 - 0.00000062 28.6 0.4 0.00000091 28.1 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:1-2724 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~1-2724 DUF2872 PF11071.3 g25362.t1 - 0.082 12.7 0 0.099 12.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2872) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:144933-145842 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~144933-145842 DUF2550 PF10739.4 g21700.t1 - 0.015 15.2 0.1 0.02 14.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2550) | Ref_seq=scaffold598_contigs=2, transcript_loc=scaffold598_contigs=2:93050-93453 Augustus predicted protein sequence Tobacco scaffold598_contigs=2~93050-93453 Dec-1 PF04624.9 g59532.t1 - 0.023 14.3 0.3 0.043 13.4 0.2 1.4 1 0 0 1 1 1 0 Dec-1 repeat | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:292588-293114 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~292588-293114 Peptidase_S30 PF01577.11 g107038.t1 - 0.083 12.2 8.4 0.096 12 5.9 1.1 1 0 0 1 1 1 0 Potyvirus P1 protease | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:452380-452748 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~452380-452748 HTH_43 PF09904.4 g71584.t1 - 0.14 11.9 0 0.18 11.6 0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:76078-76909 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~76078-76909 Tcf25 PF04910.9 g101837.t1 - 0.029 13.3 2.7 0.031 13.2 1.9 1.2 1 0 0 1 1 1 0 Transcriptional repressor TCF25 | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:76753-77067 Augustus predicted protein sequence Tobacco scaffold2223_contigs=8~76753-77067 DUF2486 PF10667.4 g51579.t1 - 1.6 9.2 6.7 1.9 8.9 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2486) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:199828-200175 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~199828-200175 PepSY_TM_2 PF13703.1 g41003.t1 - 0.044 13.9 1.9 0.065 13.4 1.3 1.2 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:388274-388561 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~388274-388561 Bunya_NS-S PF01104.12 g38462.t1 - 0.041 13.3 1.6 0.05 13 1.1 1.2 1 0 0 1 1 1 0 Bunyavirus non-structural protein NS-s | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:19975-20265 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~19975-20265 CDC45 PF02724.9 g11250.t1 - 0.46 8.4 13 0.52 8.2 9 1.1 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:23285-25188 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~23285-25188 Ribosomal_L28 PF00830.14 g30060.t1 - 0.13 12.1 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Ribosomal L28 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:318500-319544 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~318500-319544 Peroxin-22 PF12827.2 g38054.t1 - 0.01 15.5 2.2 0.52 10 0 2.5 2 1 0 2 2 2 0 Peroxisomal biogenesis protein family | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:104059-104757 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~104059-104757 ATHILA PF03078.10 g115225.t1 - 0.000000045 32.1 0.4 0.000000057 31.7 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:284049-284369 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~284049-284369 DUF4201 PF13870.1 g42399.t1 - 0.0057 16.1 5.1 0.013 14.8 3.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:203510-203986 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~203510-203986 DUF1096 PF06493.6 g74923.t1 - 1.5 8.8 11 3.1 7.8 7.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1096) | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:119628-120650 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~119628-120650 DDRGK PF09756.4 g19177.t1 - 0.12 11.7 0 0.18 11.1 0 1.3 1 0 0 1 1 1 0 DDRGK domain | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:509929-510339 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~509929-510339 Seryl_tRNA_N PF02403.17 g75326.t1 - 0.0026 17.7 2.9 0.0047 16.9 2 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:163881-164541 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~163881-164541 IFP_35_N PF07334.8 g42175.t1 - 0.0085 16 5.8 0.29 11.1 1.2 2.3 1 1 1 2 2 2 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:32890-33381 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~32890-33381 zf-CCHC_4 PF14392.1 g91341.t1 - 3.2E-009 36.3 0.8 4.6E-009 35.8 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:479748-480005 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~479748-480005 TRL PF13146.1 g20742.t1 - 0.11 12.4 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 TRL-like protein family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:168202-168456 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~168202-168456 Remorin_N PF03766.8 g67400.t1 - 0.033 13.9 2 0.069 12.9 1.4 1.5 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:211049-211429 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~211049-211429 Gly_acyl_tr_N PF06021.6 g35446.t1 - 0.043 13.2 0 0.049 13 0 1 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:95545-95847 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~95545-95847 Transpos_assoc PF13963.1 g52125.t1 - 0.076 13 0 0.1 12.6 0 1.3 1 0 0 1 1 1 0 Transposase-associated domain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:477915-478719 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~477915-478719 DUF4079 PF13301.1 g12063.t1 - 0.058 13.3 0.2 0.067 13.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:337330-337539 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~337330-337539 SP_C-Propep PF08999.5 g46921.t1 - 0.014 14.8 0 0.02 14.3 0 1.2 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:101916-102224 Augustus predicted protein sequence Tobacco scaffold1081_contigs=4~101916-102224 Peptidase_S46 PF10459.4 g2600.t1 - 0.039 12.3 0.5 0.042 12.2 0.4 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold214_contigs=4, transcript_loc=scaffold214_contigs=4:31081-31725 Augustus predicted protein sequence Tobacco scaffold214_contigs=4~31081-31725 Paired_CXXCH_1 PF09699.5 g75668.t1 - 0.028 13.9 0.1 0.055 12.9 0 1.5 1 0 0 1 1 1 0 Doubled CXXCH motif (Paired_CXXCH_1) | Ref_seq=scaffold1578_contigs=2, transcript_loc=scaffold1578_contigs=2:54093-55041 Augustus predicted protein sequence Tobacco scaffold1578_contigs=2~54093-55041 DUF4219 PF13961.1 g9460.t1 - 0.00029 20.1 1.5 0.00046 19.5 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold366_contigs=3, transcript_loc=scaffold366_contigs=3:77420-78369 Augustus predicted protein sequence Tobacco scaffold366_contigs=3~77420-78369 DNAP_B_exo_N PF08452.5 g14668.t1 - 1.3 8.3 6.7 9.4 5.6 0.7 2.8 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold480_contigs=8, transcript_loc=scaffold480_contigs=8:70847-71110 Augustus predicted protein sequence Tobacco scaffold480_contigs=8~70847-71110 DUF4201 PF13870.1 g60608.t1 - 0.04 13.3 5.2 0.062 12.7 3.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:53104-54071 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~53104-54071 Peptidase_M50B PF13398.1 g123082.t1 - 0.59 9.4 5.8 0.85 8.9 4 1.2 1 0 0 1 1 1 0 Peptidase M50B-like | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:150381-153391 Augustus predicted protein sequence Tobacco scaffold2753_contigs=11~150381-153391 DUF2053 PF09767.4 g102922.t1 - 0.11 12.4 2.7 3 7.8 0.2 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2053) | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:44322-45467 Augustus predicted protein sequence Tobacco scaffold2272_contigs=16~44322-45467 L27_1 PF09058.5 g103794.t1 - 0.022 14.6 0.1 0.17 11.7 0 2.4 3 0 0 3 3 3 0 L27_1 | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:57845-58812 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~57845-58812 DNA_Packaging_2 PF11123.3 g40494.t1 - 0.0013 18.5 0 0.0022 17.8 0 1.4 1 1 0 1 1 1 1 DNA packaging protein | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:12488-13655 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~12488-13655 CAF1A PF12253.3 g66432.t1 - 0.014 15.4 1.2 0.018 15.1 0.8 1.3 1 0 0 1 1 1 0 Chromatin assembly factor 1 subunit A | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:86410-86667 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~86410-86667 Gamma-thionin PF00304.15 g90994.t1 - 0.13 12.3 2.6 0.11 12.5 0.7 1.6 1 1 0 1 1 1 0 Gamma-thionin family | Ref_seq=scaffold1966_contigs=2, transcript_loc=scaffold1966_contigs=2:5068-5280 Augustus predicted protein sequence Tobacco scaffold1966_contigs=2~5068-5280 DUF4092 PF13322.1 g3011.t1 - 0.014 15.1 0.1 3.5 7.3 0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4092) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:108657-109433 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~108657-109433 CCDC32 PF14989.1 g23369.t1 - 0.02 14.7 1.6 1.6 8.5 1.1 2.1 1 1 0 1 1 1 0 Coiled-coil domain containing 32 | Ref_seq=scaffold642_contigs=2, transcript_loc=scaffold642_contigs=2:38973-39428 Augustus predicted protein sequence Tobacco scaffold642_contigs=2~38973-39428 FH2 PF02181.18 g43778.t1 - 0.022 13.6 0 0.023 13.5 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1028_contigs=2, transcript_loc=scaffold1028_contigs=2:3475-3999 Augustus predicted protein sequence Tobacco scaffold1028_contigs=2~3475-3999 ADIP PF11559.3 g106433.t1 - 0.018 14.9 2.9 0.018 14.9 2 1.4 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:196952-197413 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~196952-197413 PTH2 PF01981.11 g59737.t1 - 0.027 14.1 0 0.029 14 0 1.1 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:87237-87518 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~87237-87518 DUF321 PF03778.8 g44699.t1 - 0.033 13.6 0 0.065 12.6 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF321) | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:70386-70715 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~70386-70715 RVT_3 PF13456.1 g46024.t1 - 0.00014 21.5 0 0.00018 21.1 0 1.3 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:324937-325288 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~324937-325288 RFX_DNA_binding PF02257.10 g5107.t1 - 0.0035 17.4 0.9 2.8 8.1 0.1 2.2 2 0 0 2 2 2 2 RFX DNA-binding domain | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:1-1150 Augustus predicted protein sequence Tobacco scaffold271_contigs=10~1-1150 Rifin_STEVOR PF02009.11 g27025.t1 - 0.015 14.9 0 0.018 14.6 0 1.1 1 0 0 1 1 1 0 Rifin/stevor family | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:745363-745869 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~745363-745869 Phage_HK97_TLTM PF06120.6 g39762.t1 - 0.1 11.9 0 0.13 11.6 0 1.2 1 0 0 1 1 1 0 Tail length tape measure protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:172166-174099 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~172166-174099 SR-25 PF10500.4 g46858.t1 - 0.14 11.5 11.2 0.17 11.3 7.8 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1080_contigs=3, transcript_loc=scaffold1080_contigs=3:7032-8948 Augustus predicted protein sequence Tobacco scaffold1080_contigs=3~7032-8948 DUF3821 PF12863.2 g89422.t1 - 0.013 15.2 0 0.013 15.1 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:98695-99431 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~98695-99431 NADH_4Fe-4S PF10589.4 g46305.t1 - 0.75 8.9 5.7 1.2 8.3 4 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:14547-14828 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~14547-14828 NAM-associated PF14303.1 g49078.t1 - 0.0088 16.3 2.6 0.011 16 1.8 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1112_contigs=5, transcript_loc=scaffold1112_contigs=5:151184-151504 Augustus predicted protein sequence Tobacco scaffold1112_contigs=5~151184-151504 FH2 PF02181.18 g71808.t1 - 0.016 14.1 0.1 0.019 13.8 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:146014-146451 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~146014-146451 PP1c_bdg PF10488.4 g61308.t1 - 0.0085 15.3 4.5 0.0091 15.2 3.1 1 1 0 0 1 1 1 1 Phosphatase-1 catalytic subunit binding region | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:163812-164348 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~163812-164348 TTSSLRR PF12468.3 g62896.t1 - 0.033 13.7 0 0.053 13 0 1.2 1 0 0 1 1 1 0 Type III secretion system leucine rich repeat protein | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:4468-4755 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~4468-4755 Serglycin PF04360.7 g46076.t1 - 1.5 8.5 6.8 53 3.5 0 3 1 1 1 2 2 2 0 Serglycin | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:32817-37120 Augustus predicted protein sequence Tobacco scaffold1054_contigs=13~32817-37120 Serpentine_r_xa PF03383.10 g93393.t1 - 0.015 15 0 0.017 14.8 0 1.1 1 0 0 1 1 1 0 Caenorhabditis serpentine receptor-like protein, class xa | Ref_seq=scaffold2016_contigs=10, transcript_loc=scaffold2016_contigs=10:64010-64294 Augustus predicted protein sequence Tobacco scaffold2016_contigs=10~64010-64294 DUF3984 PF13136.1 g43380.t1 - 0.026 13.7 1 0.037 13.2 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3984) | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:98110-101942 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~98110-101942 DUF440 PF04269.7 g104961.t1 - 0.11 12.5 0 0.16 12 0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF440 | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:1-1359 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~1-1359 ChitinaseA_N PF08329.5 g92573.t1 - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Chitinase A, N-terminal domain | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:22980-23604 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~22980-23604 FYDLN_acid PF09538.5 g72170.t1 - 0.12 12.9 13.6 0.16 12.5 9.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:437021-437585 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~437021-437585 DREV PF05219.7 g7569.t1 - 0.08 11.8 0 0.11 11.3 0 1.1 1 0 0 1 1 1 0 DREV methyltransferase | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:388039-388473 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~388039-388473 DEADboxA PF12343.3 g116269.t1 - 0.21 11.8 2.4 4.5 7.5 1.7 2.2 1 1 0 1 1 1 0 Cold shock protein DEAD box A | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:312983-314149 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~312983-314149 DUF904 PF06005.7 g127732.t1 - 0.0053 17 0 0.0063 16.7 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF904) | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:66884-67102 Augustus predicted protein sequence Tobacco scaffold2834_contigs=1~66884-67102 Ank_3 PF13606.1 g28061.t1 - 0.015 15.4 0 0.034 14.3 0 1.5 1 0 0 1 1 1 0 Ankyrin repeat | Ref_seq=scaffold733_contigs=2, transcript_loc=scaffold733_contigs=2:1847-2273 Augustus predicted protein sequence Tobacco scaffold733_contigs=2~1847-2273 DUF566 PF04484.7 g101272.t1 - 0.17 11.3 2.3 0.18 11.2 1.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF566) | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:147829-148515 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~147829-148515 7TMR-DISM_7TM PF07695.6 g67073.t1 - 1.6 8.3 12.5 0.016 14.8 1.3 2.2 1 1 1 2 2 2 0 7TM diverse intracellular signalling | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:478733-479961 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~478733-479961 YscO PF07321.7 g119643.t1 - 0.013 15.2 1.3 0.045 13.5 0 1.9 2 0 0 2 2 2 0 Type III secretion protein YscO | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:131849-132571 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~131849-132571 TAF4 PF05236.9 g89409.t1 - 0.07 12.4 0 0.11 11.7 0 1.3 1 1 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:66284-67037 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~66284-67037 BPL_LplA_LipB PF03099.14 g51902.t1 - 0.071 13.1 0 5.5 7 0 2.2 2 0 0 2 2 2 0 Biotin/lipoate A/B protein ligase family | Ref_seq=scaffold1172_contigs=7, transcript_loc=scaffold1172_contigs=7:140387-140731 Augustus predicted protein sequence Tobacco scaffold1172_contigs=7~140387-140731 Hpre_diP_synt_I PF07456.6 g503.t1 - 0.0059 16.4 1.8 0.55 10 0.1 2.1 1 1 1 2 2 2 2 Heptaprenyl diphosphate synthase component I | Ref_seq=scaffold18_contigs=2, transcript_loc=scaffold18_contigs=2:41667-42336 Augustus predicted protein sequence Tobacco scaffold18_contigs=2~41667-42336 DUF3080 PF11279.3 g35106.t1 - 0.00071 18.8 0.8 0.00075 18.7 0.6 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3080) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:52813-53097 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~52813-53097 DUF4211 PF13926.1 g126496.t1 - 0.00044 19.6 0.1 0.00069 19 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4211) | Ref_seq=scaffold2796_contigs=1, transcript_loc=scaffold2796_contigs=1:67798-68328 Augustus predicted protein sequence Tobacco scaffold2796_contigs=1~67798-68328 G-gamma PF00631.17 g91536.t1 - 0.0056 16.3 0.1 0.013 15.2 0.1 1.6 2 0 0 2 2 2 1 GGL domain | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:198042-198326 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~198042-198326 UNC119_bdg PF15435.1 g11158.t1 - 0.077 12.3 0 0.1 11.9 0 1.2 1 0 0 1 1 1 0 UNC119-binding protein C5orf30 homologue | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:256667-256984 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~256667-256984 Vitelline_membr PF10542.4 g5660.t1 - 0.11 12 0.7 0.19 11.3 0.5 1.3 1 0 0 1 1 1 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:115233-115521 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~115233-115521 PsbP PF01789.11 g69614.t1 - 0.09 12.2 0 0.19 11.1 0 1.5 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:617503-618636 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~617503-618636 Peptidase_S49_N PF08496.5 g115614.t1 - 1.9 8.2 5.4 2.8 7.7 3.8 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:796190-796975 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~796190-796975 SYF2 PF08231.7 g101946.t1 - 0.0044 17.1 4.9 0.0058 16.7 3.4 1.3 1 0 0 1 1 1 1 SYF2 splicing factor | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:158806-159300 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~158806-159300 PPR PF01535.15 g25174.t1 - 0.000087 22.2 0 0.00023 20.9 0 1.6 1 0 0 1 1 1 1 PPR repeat | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:222715-223023 Augustus predicted protein sequence Tobacco scaffold687_contigs=8~222715-223023 Herpeto_peptide PF14409.1 g53760.t1 - 0.00071 19.2 0.1 1.8 8.3 0 2.5 2 0 0 2 2 2 2 Ribosomally synthesized peptide in Herpetosiphon | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:48318-49046 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~48318-49046 DUF2353 PF09789.4 g23424.t1 - 0.011 14.9 0.2 0.011 14.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:21573-24972 Augustus predicted protein sequence Tobacco scaffold645_contigs=7~21573-24972 Med17 PF10156.4 g97266.t1 - 0.17 10.1 4.4 0.19 9.9 3.1 1 1 0 0 1 1 1 0 Subunit 17 of Mediator complex | Ref_seq=scaffold2131_contigs=1, transcript_loc=scaffold2131_contigs=1:87909-88211 Augustus predicted protein sequence Tobacco scaffold2131_contigs=1~87909-88211 DBD_Tnp_Mut PF03108.10 g28128.t1 - 0.00035 20 0.4 0.00061 19.3 0 1.5 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:125059-125340 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~125059-125340 Pilus_CpaD PF09476.5 g71133.t1 - 0.006 16 0.1 0.0071 15.8 0.1 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:88895-89496 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~88895-89496 MG1 PF11974.3 g2500.t1 - 0.09 13.3 0.1 0.11 13.1 0.1 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:134903-135142 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~134903-135142 Sec8_exocyst PF04048.9 g74473.t1 - 0.028 14 0.9 2.9 7.4 0.1 2.3 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:351162-351962 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~351162-351962 TALPID3 PF15324.1 g21348.t1 - 0.012 13 0.3 0.013 12.8 0.2 1 1 0 0 1 1 1 0 Hedgehog signalling target | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:192016-192273 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~192016-192273 Trehalase PF01204.13 g93259.t1 - 0.033 12.8 4.6 0.036 12.6 3.2 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2012_contigs=13, transcript_loc=scaffold2012_contigs=13:110411-110806 Augustus predicted protein sequence Tobacco scaffold2012_contigs=13~110411-110806 Cas1_AcylT PF07779.7 g13971.t1 - 0.0073 14.8 0.9 0.0073 14.8 0.6 1 1 0 0 1 1 1 1 10 TM Acyl Transferase domain found in Cas1p | Ref_seq=scaffold456_contigs=9, transcript_loc=scaffold456_contigs=9:229247-229486 Augustus predicted protein sequence Tobacco scaffold456_contigs=9~229247-229486 AlkA_N PF06029.6 g59453.t1 - 0.13 12.3 1 0.5 10.4 0.4 1.9 1 1 1 2 2 2 0 AlkA N-terminal domain | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:31404-31754 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~31404-31754 MxiH PF09392.5 g20366.t1 - 0.49 11 3 0.35 11.4 1 1.5 2 0 0 2 2 2 0 Type III secretion needle MxiH like | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:139704-140117 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~139704-140117 ATHILA PF03078.10 g81557.t1 - 0.0036 15.9 0.1 0.0044 15.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:228350-228787 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~228350-228787 Peptidase_S76 PF13611.1 g24044.t1 - 0.067 13.3 0.4 0.094 12.8 0.3 1.2 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 | Ref_seq=scaffold660_contigs=2, transcript_loc=scaffold660_contigs=2:342-1845 Augustus predicted protein sequence Tobacco scaffold660_contigs=2~342-1845 KAR9 PF08580.5 g19772.t1 - 0.12 10.6 2.4 0.1 10.8 1.7 1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:429907-430688 Augustus predicted protein sequence Tobacco scaffold572_contigs=22~429907-430688 SNARE PF05739.14 g57670.t1 - 0.027 14.1 0.2 0.096 12.3 0.1 1.9 2 0 0 2 2 2 0 SNARE domain | Ref_seq=scaffold1256_contigs=5, transcript_loc=scaffold1256_contigs=5:9872-10159 Augustus predicted protein sequence Tobacco scaffold1256_contigs=5~9872-10159 zf-CCHC_4 PF14392.1 g18323.t1 - 0.15 11.7 0.5 0.28 10.8 0.4 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold551_contigs=3, transcript_loc=scaffold551_contigs=3:78538-79113 Augustus predicted protein sequence Tobacco scaffold551_contigs=3~78538-79113 NT5C PF06941.7 g38683.t1 - 0.15 11.5 0.2 0.19 11.2 0.2 1.1 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:354576-354815 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~354576-354815 Allexi_40kDa PF05549.6 g45950.t1 - 0.082 12.1 1.2 0.092 12 0.8 1 1 0 0 1 1 1 0 Allexivirus 40kDa protein | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:93248-94028 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~93248-94028 Gly-zipper_OmpA PF13436.1 g33396.t1 - 1.6 8.4 11.6 2 8.1 8.1 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain | Ref_seq=scaffold831_contigs=10, transcript_loc=scaffold831_contigs=10:16036-16287 Augustus predicted protein sequence Tobacco scaffold831_contigs=10~16036-16287 WXG100 PF06013.7 g17006.t1 - 1.2 9.1 4.2 0.26 11.3 0.7 1.6 2 0 0 2 2 2 0 Proteins of 100 residues with WXG | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:239870-241742 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~239870-241742 DUF3752 PF12572.3 g32704.t1 - 0.063 13.4 0.1 0.071 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3752) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:722462-723474 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~722462-723474 HVSL PF09749.4 g92929.t1 - 0.062 12.3 0.3 0.065 12.2 0.2 1 1 0 0 1 1 1 0 Uncharacterised conserved protein | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:213736-214298 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~213736-214298 N_NLPC_P60 PF12912.2 g116669.t1 - 0.021 14.9 3.4 0.67 10 0.3 2.1 2 0 0 2 2 2 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:91843-92586 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~91843-92586 MutS_II PF05188.12 g19725.t1 - 0.12 12.4 0 0.15 12.1 0 1.2 1 0 0 1 1 1 0 MutS domain II | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:122651-122974 Augustus predicted protein sequence Tobacco scaffold572_contigs=22~122651-122974 DUF1625 PF07787.7 g41507.t1 - 0.12 11.6 0 0.12 11.5 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:147583-147804 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~147583-147804 Macoilin PF09726.4 g82054.t1 - 0.036 12.3 1.7 0.043 12.1 1.2 1.1 1 0 0 1 1 1 0 Transmembrane protein | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:577298-577739 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~577298-577739 Bap31 PF05529.7 g50554.t1 - 1.2 8.6 3.6 1.8 7.9 2.5 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:309248-316561 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~309248-316561 ATHILA PF03078.10 g59858.t1 - 0.000011 24.1 0 0.000015 23.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:25861-27053 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~25861-27053 DUF826 PF05696.6 g108672.t1 - 0.11 12.6 8.6 0.51 10.5 1.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF826) | Ref_seq=scaffold2446_contigs=1, transcript_loc=scaffold2446_contigs=1:644-1105 Augustus predicted protein sequence Tobacco scaffold2446_contigs=1~644-1105 zf-BED PF02892.10 g106732.t1 - 0.014 15.1 1.8 0.032 13.9 1.2 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:468207-472056 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~468207-472056 CRISPR_Cas2 PF09827.4 g111762.t1 - 0.0021 18.1 0.1 0.34 11 0 2.3 1 1 1 2 2 2 2 CRISPR associated protein Cas2 | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:153578-154226 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~153578-154226 ATHILA PF03078.10 g129764.t1 - 0.00000033 29.2 0 0.00000041 28.9 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold3054_contigs=1, transcript_loc=scaffold3054_contigs=1:1124-1450 Augustus predicted protein sequence Tobacco scaffold3054_contigs=1~1124-1450 F-box-like_2 PF13013.1 g125743.t1 - 0.12 12 0.2 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 F-box-like domain | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:43877-44185 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~43877-44185 JAB PF01398.16 g104851.t1 - 0.056 13.1 0 0.077 12.7 0 1.1 1 0 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:189689-190819 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~189689-190819 Lipoprotein_7 PF01540.11 g100589.t1 - 0.0038 16.3 0 0.0042 16.1 0 1.1 1 0 0 1 1 1 1 Adhesin lipoprotein | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:15610-15970 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~15610-15970 PhaP_Bmeg PF09602.5 g112090.t1 - 0.022 14.6 0.6 0.084 12.6 0.2 1.8 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:133316-133621 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~133316-133621 DUF4584 PF15223.1 g77646.t1 - 0.73 9 5 0.59 9.3 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4584) | Ref_seq=scaffold1634_contigs=13, transcript_loc=scaffold1634_contigs=13:20005-20538 Augustus predicted protein sequence Tobacco scaffold1634_contigs=13~20005-20538 zf-CCHC PF00098.18 g20193.t1 - 0.00056 19.7 0.9 0.00091 19 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:270871-272013 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~270871-272013 MIF4G_like PF09088.6 g58238.t1 - 0.96 8.8 2.9 3.7 6.9 0 2.5 1 1 2 3 3 3 0 MIF4G like | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:393049-393381 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~393049-393381 Stathmin PF00836.14 g94971.t1 - 0.0055 16.3 0.3 0.0095 15.5 0.2 1.4 1 0 0 1 1 1 1 Stathmin family | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:10012-11289 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~10012-11289 Antifungal_pept PF11410.3 g4488.t1 - 0.1 12.6 5.7 0.17 12 3.9 1.3 1 0 0 1 1 1 0 Antifungal peptide | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:322709-323375 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~322709-323375 Matrilin_ccoil PF10393.4 g129635.t1 - 0.011 15.1 0 0.016 14.5 0 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3006_contigs=1, transcript_loc=scaffold3006_contigs=1:1192-1452 Augustus predicted protein sequence Tobacco scaffold3006_contigs=1~1192-1452 Lzipper-MIP1 PF14389.1 g112419.t1 - 0.0075 16.3 0.1 2.6 8.2 0 2.2 2 0 0 2 2 2 2 Leucine-zipper of ternary complex factor MIP1 | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:570-1397 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~570-1397 CCDC155 PF14662.1 g33011.t1 - 0.021 14.3 2.1 0.025 14.1 1.5 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:170114-170440 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~170114-170440 ATHILA PF03078.10 g62953.t1 - 0.017 13.7 0 0.26 9.8 0 2.5 3 0 0 3 3 3 0 ATHILA ORF-1 family | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:90856-91957 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~90856-91957 Mnd1 PF03962.10 g16815.t1 - 0.091 12.4 0 0.1 12.2 0 1.1 1 0 0 1 1 1 0 Mnd1 family | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:506343-507118 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~506343-507118 DUF4369 PF14289.1 g102093.t1 - 0.077 13 0 0.21 11.5 0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4369) | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:68416-69881 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~68416-69881 VGCC_beta4Aa_N PF12052.3 g55564.t1 - 0.0081 16 0.4 0.0081 16 0.3 2 2 0 0 2 2 2 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:423828-427378 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~423828-427378 HC2 PF07382.6 g46014.t1 - 0.0038 17.1 11.5 0.0038 17.1 8 2 2 0 0 2 2 2 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:311087-311857 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~311087-311857 ORC5_C PF14630.1 g108003.t1 - 0.013 14.9 0.3 0.023 14.1 0.2 1.3 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 5 C-terminus | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:64244-65326 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~64244-65326 eIF2_C PF09173.6 g99936.t1 - 0.081 12.9 0.2 0.12 12.4 0.1 1.4 1 1 0 1 1 1 0 Initiation factor eIF2 gamma, C terminal | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:167313-167675 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~167313-167675 Elf1 PF05129.8 g87119.t1 - 0.17 11.5 4.1 0.24 11.1 2.8 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:101573-102186 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~101573-102186 DUF3153 PF11353.3 g61334.t1 - 0.24 10.7 4.6 0.32 10.3 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:265801-266580 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~265801-266580 Ribosomal_60s PF00428.14 g121954.t1 - 0.055 13.8 5 0.07 13.5 3.5 1.2 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2739_contigs=11, transcript_loc=scaffold2739_contigs=11:133403-133690 Augustus predicted protein sequence Tobacco scaffold2739_contigs=11~133403-133690 Cut8_N PF14482.1 g61476.t1 - 0.052 13.5 0.3 1.3 9 0.3 2.5 2 1 0 2 2 2 0 Cut8 proteasome-binding domain | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:235248-236299 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~235248-236299 IMS PF00817.15 g105057.t1 - 0.062 13 0 0.064 13 0 1.2 1 0 0 1 1 1 0 impB/mucB/samB family | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:176608-176982 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~176608-176982 Transposase_28 PF04195.7 g4168.t1 - 0.0089 15.3 0 0.013 14.7 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:34863-35963 Augustus predicted protein sequence Tobacco scaffold254_contigs=6~34863-35963 Glyco_hydro_44 PF12891.2 g117160.t1 - 0.014 14.9 0 0.018 14.5 0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase family 44 | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:62945-63295 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~62945-63295 EF-hand_1 PF00036.27 g26030.t1 - 0.0062 15.7 0.1 0.0075 15.5 0.1 1.1 1 0 0 1 1 1 1 EF hand | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:1-592 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~1-592 zf-CCHC_4 PF14392.1 g19494.t1 - 0.098 12.3 0.6 0.25 11 0.4 1.7 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:681031-681336 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~681031-681336 zf-CCHC PF00098.18 g90053.t1 - 0.22 11.5 3.3 0.47 10.4 2.3 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1957_contigs=3, transcript_loc=scaffold1957_contigs=3:68396-68766 Augustus predicted protein sequence Tobacco scaffold1957_contigs=3~68396-68766 GMC_oxred_C PF05199.8 g67681.t1 - 0.0033 17.7 0.5 0.0052 17 0.3 1.2 1 0 0 1 1 1 1 GMC oxidoreductase | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:10805-11284 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~10805-11284 Potyvirid-P3 PF13608.1 g13991.t1 - 0.012 14.7 0.5 0.017 14.2 0.3 1.1 1 0 0 1 1 1 0 Protein P3 of Potyviral polyprotein | Ref_seq=scaffold457_contigs=12, transcript_loc=scaffold457_contigs=12:34698-35212 Augustus predicted protein sequence Tobacco scaffold457_contigs=12~34698-35212 PapG_C PF03628.8 g130062.t1 - 0.0049 16.5 0 1.5 8.5 0 2.1 1 1 1 2 2 2 2 PapG chaperone-binding domain | Ref_seq=scaffold3388_contigs=1, transcript_loc=scaffold3388_contigs=1:934-1434 Augustus predicted protein sequence Tobacco scaffold3388_contigs=1~934-1434 Ipi1_N PF12333.3 g60526.t1 - 0.069 13.1 0.3 0.096 12.6 0.2 1.2 1 0 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:414239-414685 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~414239-414685 DUF2721 PF11026.3 g61878.t1 - 0.028 14 0.2 0.034 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) | Ref_seq=scaffold1343_contigs=14, transcript_loc=scaffold1343_contigs=14:483488-484343 Augustus predicted protein sequence Tobacco scaffold1343_contigs=14~483488-484343 DegS PF05384.6 g88241.t1 - 0.0076 15.4 0.7 0.0085 15.3 0.5 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:26122-26428 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~26122-26428 SnAPC_2_like PF11035.3 g20965.t1 - 0.046 13.1 0.3 0.062 12.7 0.2 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex subunit 2-like | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:148475-149221 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~148475-149221 ApoA-II PF04711.8 g63333.t1 - 0.0029 17.4 0 0.0039 17 0 1.2 1 0 0 1 1 1 1 Apolipoprotein A-II (ApoA-II) | Ref_seq=scaffold1372_contigs=4, transcript_loc=scaffold1372_contigs=4:16931-17861 Augustus predicted protein sequence Tobacco scaffold1372_contigs=4~16931-17861 Chromadorea_ALT PF05535.7 g35732.t1 - 0.071 13.1 0.1 0.087 12.9 0 1.2 1 0 0 1 1 1 0 Chromadorea ALT protein | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:245929-246171 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~245929-246171 PspB PF06667.7 g129790.t1 - 0.06 13.2 0.6 1 9.3 0 2.4 2 0 0 2 2 2 0 Phage shock protein B | Ref_seq=scaffold3064_contigs=1, transcript_loc=scaffold3064_contigs=1:878-1763 Augustus predicted protein sequence Tobacco scaffold3064_contigs=1~878-1763 WSK PF03832.8 g93950.t1 - 0.081 12.2 0.5 0.16 11.2 0.4 1.5 1 0 0 1 1 1 0 WSK motif | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:254169-254483 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~254169-254483 Med17 PF10156.4 g100783.t1 - 0.065 11.5 0.5 0.077 11.2 0.3 1 1 0 0 1 1 1 0 Subunit 17 of Mediator complex | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:1-333 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~1-333 Integrin_B_tail PF07965.7 g125987.t1 - 0.86 10 3.8 0.44 10.9 0.5 2 1 1 1 2 2 2 0 Integrin beta tail domain | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:15288-16380 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~15288-16380 DUF1725 PF08333.6 g14873.t1 - 0.11 11.9 0.1 0.19 11 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:135458-135944 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~135458-135944 MRI PF15325.1 g52449.t1 - 6.9 7.6 8.7 0.5 11.3 1.5 2.3 2 1 0 2 2 2 0 Modulator of retrovirus infection | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:290272-292105 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~290272-292105 HNH_4 PF13395.1 g8557.t1 - 0.14 11.7 2.9 31 4.2 1.8 3.2 1 1 1 2 2 2 0 HNH endonuclease | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:194520-194921 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~194520-194921 ATHILA PF03078.10 g28631.t1 - 0.00000008 31.2 0.1 0.00000026 29.6 0.1 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold749_contigs=4, transcript_loc=scaffold749_contigs=4:88628-90271 Augustus predicted protein sequence Tobacco scaffold749_contigs=4~88628-90271 ATHILA PF03078.10 g65375.t1 - 0.00001 24.3 0 0.0035 16 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:133194-133823 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~133194-133823 zf-CCHC PF00098.18 g124408.t1 - 0.1 12.5 5.1 0.1 12.5 3.5 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2159654-2159908 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2159654-2159908 MRI PF15325.1 g59664.t1 - 0.38 11.7 2.8 0.63 11 1.9 1.5 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:45693-46456 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~45693-46456 GAS PF13851.1 g39243.t1 - 0.1 11.7 1 0.13 11.4 0.7 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:195930-197914 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~195930-197914 PHZA_PHZB PF03284.8 g107480.t1 - 0.12 11.4 0 0.18 10.8 0 1.5 1 1 0 1 1 1 0 Phenazine biosynthesis protein A/B | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:93801-95769 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~93801-95769 DUF77 PF01910.12 g93125.t1 - 0.0082 15.7 0.1 0.01 15.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF77 | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:5891-6785 Augustus predicted protein sequence Tobacco scaffold2008_contigs=4~5891-6785 RVT_3 PF13456.1 g9296.t1 - 0.000019 24.3 0 0.000024 24 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:118175-118381 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~118175-118381 O-ag_pol_Wzy PF14296.1 g25919.t1 - 0.016 13.7 0.2 0.016 13.7 0.1 1.1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:77892-78191 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~77892-78191 DUF914 PF06027.7 g84794.t1 - 0.0016 17.3 0.4 0.085 11.6 0 2 2 0 0 2 2 2 2 Eukaryotic protein of unknown function (DUF914) | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:596275-597357 Augustus predicted protein sequence Tobacco scaffold1827_contigs=21~596275-597357 Pex14_N PF04695.8 g94945.t1 - 2 8.4 8.6 11 6 6 1.9 1 1 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:46101-46708 Augustus predicted protein sequence Tobacco scaffold2049_contigs=3~46101-46708 RVT_3 PF13456.1 g3412.t1 - 0.012 15.4 0.3 0.037 13.8 0.2 1.8 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:23386-23983 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~23386-23983 NTNH_C PF08470.5 g47253.t1 - 0.0032 17.1 0 0.0039 16.8 0 1.1 1 0 0 1 1 1 1 Nontoxic nonhaemagglutinin C-terminal | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:21037-21273 Augustus predicted protein sequence Tobacco scaffold1091_contigs=17~21037-21273 IL6Ra-bind PF09240.5 g125404.t1 - 0.27 11.4 2 0.32 11.1 0.2 1.9 2 0 0 2 2 2 0 Interleukin-6 receptor alpha chain, binding | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:42265-42627 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~42265-42627 NUT_C PF12882.2 g50230.t1 - 0.13 11.8 0 0.22 11.1 0 1.3 1 0 0 1 1 1 0 NUT protein C terminal | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:192117-198216 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~192117-198216 Na_Ala_symp PF01235.12 g52803.t1 - 0.045 12.3 0 0.045 12.3 0 1 1 0 0 1 1 1 0 Sodium:alanine symporter family | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1127185-1127570 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1127185-1127570 Peptidase_S46 PF10459.4 g82704.t1 - 0.036 12.4 7.4 0.038 12.4 5.1 1.1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold1763_contigs=6, transcript_loc=scaffold1763_contigs=6:20055-20621 Augustus predicted protein sequence Tobacco scaffold1763_contigs=6~20055-20621 RRF PF01765.14 g87483.t1 - 0.066 12.6 0.2 0.073 12.5 0.1 1 1 0 0 1 1 1 0 Ribosome recycling factor | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:214845-215081 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~214845-215081 DUF3363 PF11843.3 g77900.t1 - 0.0093 14.6 0.7 0.012 14.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:12109-12948 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~12109-12948 DUF3323 PF11796.3 g23477.t1 - 0.0083 15.4 1.4 0.0093 15.2 1 1 1 0 0 1 1 1 1 Protein of unknown function N-terminus (DUF3323) | Ref_seq=scaffold645_contigs=7, transcript_loc=scaffold645_contigs=7:130561-131233 Augustus predicted protein sequence Tobacco scaffold645_contigs=7~130561-131233 Cep57_MT_bd PF06657.8 g34615.t1 - 0.016 15.1 1.5 0.016 15.1 1 2.1 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:64502-64783 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~64502-64783 SAGA-Tad1 PF12767.2 g1833.t1 - 0.0094 15.6 0.7 0.011 15.3 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:11406-11774 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~11406-11774 KRBA1 PF15287.1 g111965.t1 - 0.74 9.2 3.4 1.8 7.9 0.1 2.2 1 1 1 2 2 2 0 KRBA1 family repeat | Ref_seq=scaffold2599_contigs=27, transcript_loc=scaffold2599_contigs=27:21900-22387 Augustus predicted protein sequence Tobacco scaffold2599_contigs=27~21900-22387 RCSD PF05177.7 g51746.t1 - 0.03 14.8 5.7 0.039 14.4 3.9 1.2 1 0 0 1 1 1 0 RCSD region | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:127039-127395 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~127039-127395 Pro-rich_19 PF15455.1 g92098.t1 - 0.025 13.6 1.6 0.028 13.4 1.1 1 1 0 0 1 1 1 0 Proline-rich 19 | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:224453-224773 Augustus predicted protein sequence Tobacco scaffold1982_contigs=6~224453-224773 SK_channel PF03530.9 g113896.t1 - 0.093 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Calcium-activated SK potassium channel | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:666444-668597 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~666444-668597 RVT_3 PF13456.1 g116650.t1 - 0.00001 25.1 0 0.000013 24.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2673_contigs=12, transcript_loc=scaffold2673_contigs=12:46033-46386 Augustus predicted protein sequence Tobacco scaffold2673_contigs=12~46033-46386 YjfB_motility PF14070.1 g37705.t1 - 0.17 11.6 1.6 0.27 11 1.1 1.3 1 0 0 1 1 1 0 Putative motility protein | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:254711-255525 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~254711-255525 zf-CCHC PF00098.18 g55028.t1 - 0.048 13.6 0.1 0.087 12.7 0 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:409494-409745 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~409494-409745 DUF1053 PF06327.9 g51560.t1 - 0.12 12.7 0.6 0.19 12.1 0.3 1.3 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1053) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:143153-144485 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~143153-144485 DNA_photolyase PF00875.13 g106193.t1 - 0.017 14.8 0 0.034 13.9 0 1.4 1 0 0 1 1 1 0 DNA photolyase | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:92359-93093 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~92359-93093 OAD_gamma PF04277.8 g75780.t1 - 0.023 15 0.9 0.036 14.4 0.6 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:10291-10560 Augustus predicted protein sequence Tobacco scaffold1596_contigs=1~10291-10560 ATHILA PF03078.10 g114394.t1 - 0.028 13 0 0.033 12.7 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:92581-93438 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~92581-93438 DUF4290 PF14123.1 g7079.t1 - 0.013 14.6 0.1 0.018 14.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:8978-9262 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~8978-9262 DUF3614 PF12267.3 g29146.t1 - 0.7 10.1 6.5 0.14 12.3 1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3614) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:193720-194664 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~193720-194664 KN_motif PF12075.3 g51122.t1 - 2.1 8.2 13.3 6.5 6.6 0.1 4.2 4 0 0 4 4 4 0 KN motif | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:165845-170201 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~165845-170201 Spc97_Spc98 PF04130.8 g63342.t1 - 0.026 12.8 0 0.7 8.1 0 2 1 1 0 1 1 1 0 Spc97 / Spc98 family | Ref_seq=scaffold1372_contigs=4, transcript_loc=scaffold1372_contigs=4:42265-42845 Augustus predicted protein sequence Tobacco scaffold1372_contigs=4~42265-42845 4HBT_3 PF13622.1 g124870.t1 - 0.01 15.6 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:77721-78362 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~77721-78362 DUF2141 PF09912.4 g109608.t1 - 0.035 13.7 0 0.041 13.5 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2141) | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:131126-131801 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~131126-131801 ATHILA PF03078.10 g93495.t1 - 0.0001 21 0 0.00078 18.1 0 1.9 1 1 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2021_contigs=4, transcript_loc=scaffold2021_contigs=4:49710-50042 Augustus predicted protein sequence Tobacco scaffold2021_contigs=4~49710-50042 RNase_P_pop3 PF08228.6 g88409.t1 - 0.048 13.4 0.1 0.057 13.2 0.1 1 1 0 0 1 1 1 0 RNase P subunit Pop3 | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:199295-199555 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~199295-199555 Tat PF00539.13 g117858.t1 - 0.071 12.7 1.8 0.18 11.4 1.2 1.8 1 0 0 1 1 1 0 Transactivating regulatory protein (Tat) | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:129311-129715 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~129311-129715 POM121 PF15229.1 g104420.t1 - 0.012 15 3.4 0.014 14.8 2.3 1.1 1 0 0 1 1 1 0 POM121 family | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:78705-79018 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~78705-79018 ASFV_J13L PF05568.6 g59772.t1 - 0.054 13 0 0.11 12 0 1.5 1 0 0 1 1 1 0 African swine fever virus J13L protein | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:171872-172864 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~171872-172864 DUF4322 PF14210.1 g103053.t1 - 0.059 12.8 0 0.077 12.4 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4322) | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:68105-68415 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~68105-68415 zf-CSL PF05207.8 g106698.t1 - 0.05 13.1 0.6 0.072 12.6 0.4 1.2 1 0 0 1 1 1 0 CSL zinc finger | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:385975-386554 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~385975-386554 DUF347 PF03988.7 g77955.t1 - 0.0081 16 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Repeat of Unknown Function (DUF347) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:97077-98374 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~97077-98374 UBN2 PF14223.1 g65698.t1 - 0.059 13.1 13.6 0.18 11.6 0.1 4.4 4 1 0 4 4 4 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:126029-127373 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~126029-127373 DUF1180 PF06679.7 g103563.t1 - 0.0051 16.7 0.5 0.0051 16.7 0.3 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1180) | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:54649-54867 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~54649-54867 Vmethyltransf_C PF08456.5 g38993.t1 - 0.059 12.7 0 0.069 12.5 0 1.2 1 0 0 1 1 1 0 Viral methyltransferase C-terminal | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:131564-131884 Augustus predicted protein sequence Tobacco scaffold947_contigs=9~131564-131884 NESP55 PF06390.7 g32512.t1 - 1.4 8.2 7.5 1.5 8.1 5.2 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:284437-284837 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~284437-284837 MIP-T3 PF10243.4 g47027.t1 - 0.11 10.9 17.6 0.12 10.7 12.2 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:377988-378275 Augustus predicted protein sequence Tobacco scaffold1083_contigs=11~377988-378275 Cys_rich_CPCC PF14206.1 g93129.t1 - 0.14 11.7 2.7 0.14 11.7 0.8 1.8 2 0 0 2 2 2 0 Cysteine-rich CPCC | Ref_seq=scaffold2008_contigs=4, transcript_loc=scaffold2008_contigs=4:20115-20423 Augustus predicted protein sequence Tobacco scaffold2008_contigs=4~20115-20423 DUF3035 PF11233.3 g30632.t1 - 0.021 14.8 0.7 0.033 14.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:53973-55019 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~53973-55019 COG6 PF06419.6 g61523.t1 - 0.045 11.8 0 0.049 11.7 0 1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:22129-22434 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~22129-22434 HTH_40 PF14493.1 g55839.t1 - 0.074 13.2 0.3 0.098 12.8 0.2 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:50657-51215 Augustus predicted protein sequence Tobacco scaffold1233_contigs=6~50657-51215 PRCC PF10253.4 g60638.t1 - 0.033 14.8 0.2 0.039 14.6 0.1 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:155514-155738 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~155514-155738 Adenyl_cycl_N PF12633.2 g127820.t1 - 0.067 12.7 0 0.12 11.9 0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain | Ref_seq=scaffold2838_contigs=1, transcript_loc=scaffold2838_contigs=1:20391-24666 Augustus predicted protein sequence Tobacco scaffold2838_contigs=1~20391-24666 PsbP PF01789.11 g66747.t1 - 0.047 13.1 0 0.077 12.4 0 1.3 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:572841-573662 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~572841-573662 DUF2294 PF10057.4 g42021.t1 - 0.12 11.9 0.1 0.24 11 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:81585-82221 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~81585-82221 CLU_N PF15044.1 g42016.t1 - 0.2 11.8 1.6 0.26 11.4 0.6 1.6 2 1 0 2 2 2 0 Mitochondrial function, CLU-N-term | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:61614-61985 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~61614-61985 Period_C PF12114.3 g53228.t1 - 0.037 13.6 0.5 0.036 13.6 0.3 1.1 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:39595-39924 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~39595-39924 DUF3375 PF11855.3 g50176.t1 - 0.11 11.1 2.4 0.12 11.1 1.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) | Ref_seq=scaffold1136_contigs=7, transcript_loc=scaffold1136_contigs=7:77720-78283 Augustus predicted protein sequence Tobacco scaffold1136_contigs=7~77720-78283 DUF2373 PF10180.4 g112413.t1 - 0.037 13.5 0.1 1.6 8.3 0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2373) | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:99885-100487 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~99885-100487 Cornifin PF02389.10 g66421.t1 - 0.047 13.4 4.3 0.057 13.1 3 1.1 1 0 0 1 1 1 0 Cornifin (SPRR) family | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:69731-70260 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~69731-70260 SnoaL_4 PF13577.1 g15425.t1 - 0.12 12.2 0 0.14 12 0 1.1 1 0 0 1 1 1 0 SnoaL-like domain | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:312586-312852 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~312586-312852 DUF1828 PF08861.5 g100941.t1 - 0.034 13.7 1 0.047 13.3 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF1828 | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:370094-370426 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~370094-370426 Allatostatin PF05953.7 g10471.t1 - 0.056 13.9 1.3 0.26 11.9 0.2 2.4 2 0 0 2 2 2 0 Allatostatin | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:73160-73822 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~73160-73822 Pterin_4a PF01329.14 g6752.t1 - 0.11 12.3 0.4 0.16 11.7 0.3 1.4 1 1 0 1 1 1 0 Pterin 4 alpha carbinolamine dehydratase | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:107317-107613 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~107317-107613 FH2 PF02181.18 g124693.t1 - 0.026 13.4 0 0.032 13.1 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:293741-296030 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~293741-296030 Pinin_SDK_N PF04697.8 g50139.t1 - 0.11 12.5 2.1 0.13 12.2 1.5 1.1 1 0 0 1 1 1 0 pinin/SDK conserved region | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:368940-369155 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~368940-369155 DUF1365 PF07103.6 g112807.t1 - 0.035 13.1 0.1 0.036 13.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1365) | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:330444-331174 Augustus predicted protein sequence Tobacco scaffold2618_contigs=26~330444-331174 YrhK PF14145.1 g6141.t1 - 0.0021 17.6 0 0.0047 16.5 0 1.6 1 0 0 1 1 1 1 YrhK-like protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:118972-119244 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~118972-119244 PGBA_C PF15437.1 g74991.t1 - 0.02 15 4 0.024 14.7 2.7 1.2 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA C-terminal | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:237126-237350 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~237126-237350 Minor_capsid_3 PF12691.2 g110460.t1 - 0.000000001 38.2 0 0.064 12.9 0 4.1 1 1 2 4 4 4 4 Minor capsid protein from bacteriophage | Ref_seq=scaffold2550_contigs=9, transcript_loc=scaffold2550_contigs=9:5450-7859 Augustus predicted protein sequence Tobacco scaffold2550_contigs=9~5450-7859 Nup96 PF12110.3 g57660.t1 - 0.12 11.4 0.1 0.25 10.4 0.1 1.5 1 1 1 2 2 2 0 Nuclear protein 96 | Ref_seq=scaffold1254_contigs=5, transcript_loc=scaffold1254_contigs=5:29363-30014 Augustus predicted protein sequence Tobacco scaffold1254_contigs=5~29363-30014 HD-ZIP_N PF04618.7 g47387.t1 - 0.46 11 3 0.57 10.7 1.7 1.3 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:41026-41675 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~41026-41675 DUF1003 PF06210.6 g58562.t1 - 0.082 12.8 0.8 0.13 12.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:150275-150667 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~150275-150667 Chordopox_A13L PF05961.6 g78761.t1 - 0.13 12.2 0 0.2 11.6 0 1.3 1 0 0 1 1 1 0 Chordopoxvirus A13L protein | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:102203-102433 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~102203-102433 DUF929 PF06053.6 g36170.t1 - 0.011 14.8 0 0.011 14.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF929) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:421389-421682 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~421389-421682 Tissue_fac PF01108.12 g62779.t1 - 0.13 11.9 0 0.17 11.6 0 1.1 1 0 0 1 1 1 0 Tissue factor | Ref_seq=scaffold1357_contigs=25, transcript_loc=scaffold1357_contigs=25:256889-257259 Augustus predicted protein sequence Tobacco scaffold1357_contigs=25~256889-257259 Peptidase_C39 PF03412.10 g66012.t1 - 0.02 14.6 0.4 0.04 13.7 0.3 1.4 1 0 0 1 1 1 0 Peptidase C39 family | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:139735-141707 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~139735-141707 DMPK_coil PF08826.5 g58966.t1 - 0.016 15.1 0.1 0.028 14.3 0.1 1.4 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:299120-300597 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~299120-300597 Prefoldin PF02996.12 g114161.t1 - 0.03 13.9 1.4 0.048 13.3 1 1.3 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:7467-7802 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~7467-7802 DUF423 PF04241.10 g67347.t1 - 0.11 12.4 0.4 0.16 11.8 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF423) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:87326-87828 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~87326-87828 VASP_tetra PF08776.6 g3937.t1 - 1.7 8 3.8 13 5.1 0.4 2.3 1 1 1 2 2 2 0 VASP tetramerisation domain | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:119635-121439 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~119635-121439 Peptidase_S46 PF10459.4 g123268.t1 - 0.038 12.4 2.7 0.043 12.2 1.9 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:196800-197660 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~196800-197660 NB-ARC PF00931.17 g49277.t1 - 9.6E-023 80.4 8.2 1.4E-012 47 0.4 2.7 3 0 0 3 3 3 2 NB-ARC domain | Ref_seq=scaffold1122_contigs=3, transcript_loc=scaffold1122_contigs=3:20426-22945 Augustus predicted protein sequence Tobacco scaffold1122_contigs=3~20426-22945 SapC PF07277.6 g29227.t1 - 0.018 14.3 0 0.024 13.9 0 1.2 1 0 0 1 1 1 0 SapC | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:25252-25581 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~25252-25581 Het-C PF07217.6 g28290.t1 - 0.049 11.8 0.4 0.054 11.7 0.3 1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:121724-122158 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~121724-122158 Mito_fiss_reg PF05308.6 g20070.t1 - 0.13 11.6 1.3 0.12 11.7 0.9 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:39650-39871 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~39650-39871 DUF2933 PF11666.3 g2348.t1 - 0.12 11.9 1.6 0.21 11.1 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2933) | Ref_seq=scaffold209_contigs=3, transcript_loc=scaffold209_contigs=3:66290-66532 Augustus predicted protein sequence Tobacco scaffold209_contigs=3~66290-66532 DUF424 PF04242.8 g148.t1 - 0.0026 17.7 0.1 0.0038 17.2 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF424) | Ref_seq=scaffold6_contigs=8, transcript_loc=scaffold6_contigs=8:201161-202612 Augustus predicted protein sequence Tobacco scaffold6_contigs=8~201161-202612 NESP55 PF06390.7 g98748.t1 - 1.9 7.8 7.1 2.3 7.5 5 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:127374-129324 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~127374-129324 Nop53 PF07767.6 g107351.t1 - 0.11 11.5 0.4 0.13 11.2 0.3 1.1 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1211954-1212271 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1211954-1212271 Stm1_N PF09598.5 g67543.t1 - 0.023 15.3 2.8 0.033 14.8 2 1.3 1 0 0 1 1 1 0 Stm1 | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:68693-70598 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~68693-70598 Death PF00531.17 g65837.t1 - 0.077 12.7 0.5 6.7 6.5 0 2.3 2 0 0 2 2 2 0 Death domain | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:206969-207765 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~206969-207765 TrbC PF04956.8 g127249.t1 - 0.054 13.5 0.1 0.072 13.1 0 1.2 1 0 0 1 1 1 0 TrbC/VIRB2 family | Ref_seq=scaffold2817_contigs=1, transcript_loc=scaffold2817_contigs=1:48699-49004 Augustus predicted protein sequence Tobacco scaffold2817_contigs=1~48699-49004 Imm44 PF15584.1 g75940.t1 - 0.059 13.2 0.1 1.7 8.5 0 2.4 2 1 0 2 2 2 0 Immunity protein 44 | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:30813-33645 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~30813-33645 zf-CCHC_5 PF14787.1 g101157.t1 - 0.012 15 0.5 0.037 13.5 0.4 1.9 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:167640-168567 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~167640-168567 SASP_gamma PF04259.9 g73398.t1 - 0.22 11.6 4.1 0.31 11.2 2.9 1.2 1 0 0 1 1 1 0 Small, acid-soluble spore protein, gamma-type | Ref_seq=scaffold1540_contigs=16, transcript_loc=scaffold1540_contigs=16:11661-11873 Augustus predicted protein sequence Tobacco scaffold1540_contigs=16~11661-11873 Redoxin PF08534.5 g125701.t1 - 0.14 11.6 0 0.17 11.4 0 1.2 1 0 0 1 1 1 0 Redoxin | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:94377-94709 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~94377-94709 TRM PF02005.11 g725.t1 - 0.09 11.6 0.2 0.089 11.6 0.2 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:3392-3997 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~3392-3997 Fis1_TPR_N PF14852.1 g117262.t1 - 0.13 11.5 0 0.17 11.1 0 1.2 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat | Ref_seq=scaffold2683_contigs=2, transcript_loc=scaffold2683_contigs=2:1-249 Augustus predicted protein sequence Tobacco scaffold2683_contigs=2~1-249 G6PD_bact PF10786.4 g91538.t1 - 0.017 14.5 0 0.019 14.4 0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:199311-199667 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~199311-199667 TFR_dimer PF04253.10 g25659.t1 - 0.058 12.9 0 0.067 12.7 0 1.1 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain | Ref_seq=scaffold702_contigs=3, transcript_loc=scaffold702_contigs=3:51042-51263 Augustus predicted protein sequence Tobacco scaffold702_contigs=3~51042-51263 DUF4478 PF14793.1 g45302.t1 - 0.021 14.4 0 0.031 13.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4478) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:136081-136786 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~136081-136786 rpo132 PF12415.3 g94996.t1 - 0.036 13 0 0.056 12.4 0 1.3 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:63260-63592 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~63260-63592 Nodulin_late PF07127.6 g87111.t1 - 0.0061 16.6 3.9 0.0083 16.2 2.7 1.3 1 1 0 1 1 1 1 Late nodulin protein | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:81779-82160 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~81779-82160 CENP-F_C_Rb_bdg PF10490.4 g112099.t1 - 0.0008 18.6 0.3 1 8.6 0 2.3 1 1 1 2 2 2 2 Rb-binding domain of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:152907-153822 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~152907-153822 NOB1_Zn_bind PF08772.6 g35501.t1 - 0.004 16.9 0.1 0.0081 15.9 0.1 1.5 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:234494-234936 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~234494-234936 DUF1282 PF06930.7 g26544.t1 - 0.023 14.3 1 0.025 14.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:60097-61703 Augustus predicted protein sequence Tobacco scaffold717_contigs=7~60097-61703 UPF0542 PF15086.1 g100769.t1 - 0.0053 16.4 0 0.0082 15.8 0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family UPF0542 | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:151493-151750 Augustus predicted protein sequence Tobacco scaffold2204_contigs=7~151493-151750 DUF607 PF04678.8 g71201.t1 - 0.75 9.7 5.2 0.97 9.3 3.6 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF607 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:237166-237456 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~237166-237456 PMD PF10536.4 g25231.t1 - 0.0047 15.9 0 0.0053 15.7 0 1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold690_contigs=9, transcript_loc=scaffold690_contigs=9:170411-170728 Augustus predicted protein sequence Tobacco scaffold690_contigs=9~170411-170728 DUF1313 PF07011.6 g43974.t1 - 0.13 11.9 0 0.18 11.5 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1313) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:73155-73582 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~73155-73582 zf-CCHC PF00098.18 g127539.t1 - 0.000076 22.4 3.1 0.00012 21.8 2.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:14887-15180 Augustus predicted protein sequence Tobacco scaffold2829_contigs=1~14887-15180 DUF3135 PF11333.3 g99888.t1 - 0.11 12.6 0.6 0.16 12.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:22752-23117 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~22752-23117 UPF0016 PF01169.14 g75878.t1 - 0.021 14.9 1.4 0.028 14.5 1 1.2 1 0 0 1 1 1 0 Uncharacterized protein family UPF0016 | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:81035-81733 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~81035-81733 UBN2_2 PF14227.1 g62513.t1 - 0.0031 17 0.1 1.8 8.1 0 2.4 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1349_contigs=8, transcript_loc=scaffold1349_contigs=8:108261-109623 Augustus predicted protein sequence Tobacco scaffold1349_contigs=8~108261-109623 Microtub_assoc PF07989.6 g106692.t1 - 0.093 12.5 0.4 5.5 6.8 0.1 2.2 2 0 0 2 2 2 0 Microtubule associated | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:362614-362970 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~362614-362970 CAF-1_p150 PF11600.3 g78629.t1 - 0.000097 21.8 24.9 0.00011 21.7 17.2 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1666_contigs=3, transcript_loc=scaffold1666_contigs=3:33497-33958 Augustus predicted protein sequence Tobacco scaffold1666_contigs=3~33497-33958 DUF2215 PF10225.4 g82414.t1 - 0.013 14.9 3.5 0.02 14.3 2.4 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:445673-446128 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~445673-446128 Nup54 PF13874.1 g120588.t1 - 0.0012 18.5 2.9 0.0013 18.4 2 1 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:265215-265472 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~265215-265472 Folliculin PF11704.3 g89186.t1 - 0.01 15.4 0 0.012 15.1 0 1 1 0 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:43107-43504 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~43107-43504 FH2 PF02181.18 g94577.t1 - 0.083 11.7 0 0.15 10.8 0 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:88606-89415 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~88606-89415 UPF0004 PF00919.15 g59004.t1 - 0.11 12.3 0.3 2.1 8.2 0 2.1 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:1-660 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~1-660 HNF-1A_C PF04813.7 g24240.t1 - 5.4 7.3 10.4 3.3 8 0.8 2.6 2 1 0 2 2 2 0 Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:288789-290532 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~288789-290532 Defensin_beta PF00711.14 g101063.t1 - 0.066 13.1 1.3 0.12 12.3 0.9 1.4 1 1 0 1 1 1 0 Beta defensin | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:214301-214762 Augustus predicted protein sequence Tobacco scaffold2207_contigs=13~214301-214762 DUF1985 PF09331.6 g84513.t1 - 0.0071 16.1 0 0.01 15.6 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:54293-55503 Augustus predicted protein sequence Tobacco scaffold1823_contigs=11~54293-55503 LRRNT PF01462.13 g107492.t1 - 0.08 12.4 0.9 0.13 11.8 0.6 1.4 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:143616-146586 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~143616-146586 DUF1985 PF09331.6 g40957.t1 - 3.5E-011 43 0 7.3E-009 35.5 0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:280817-282116 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~280817-282116 FxsA PF04186.8 g48973.t1 - 0.052 13.1 1 7.1 6.2 0 2.1 2 0 0 2 2 2 0 FxsA cytoplasmic membrane protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:44556-44858 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~44556-44858 ER-remodelling PF14755.1 g130411.t1 - 0.12 12.4 0.1 0.13 12.2 0.1 1 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold4375_contigs=1, transcript_loc=scaffold4375_contigs=1:751-908 Augustus predicted protein sequence Tobacco scaffold4375_contigs=1~751-908 BLVR PF06375.6 g80264.t1 - 0.0079 16 4.3 0.012 15.4 3 1.3 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:18443-19150 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~18443-19150 ANP PF00212.13 g119683.t1 - 0.25 11.4 1.9 0.32 11.1 0.1 2.1 2 0 0 2 2 2 0 Atrial natriuretic peptide | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:240872-241180 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~240872-241180 Myb_DNA-bind_3 PF12776.2 g99862.t1 - 2.5E-009 37.6 0.1 5.9E-009 36.4 0 1.6 2 0 0 2 2 2 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:215141-217963 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~215141-217963 BSP_II PF05432.6 g88058.t1 - 2.7 7.1 5.3 3.2 6.9 3.7 1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold1913_contigs=1, transcript_loc=scaffold1913_contigs=1:63963-64301 Augustus predicted protein sequence Tobacco scaffold1913_contigs=1~63963-64301 DUF1985 PF09331.6 g75141.t1 - 0.011 15.4 0 0.012 15.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:40029-40619 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~40029-40619 Not3 PF04065.10 g35296.t1 - 0.0015 17.8 5.9 0.0017 17.7 4.1 1.1 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:397359-397730 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~397359-397730 DUF4237 PF14021.1 g37191.t1 - 0.063 13.5 0 1.9 8.7 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4237) | Ref_seq=scaffold912_contigs=2, transcript_loc=scaffold912_contigs=2:348-1314 Augustus predicted protein sequence Tobacco scaffold912_contigs=2~348-1314 DUF959 PF06121.9 g54733.t1 - 0.039 13.5 0 0.052 13.1 0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF959) | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:178888-179367 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~178888-179367 RDM PF11002.3 g115186.t1 - 0.0059 16.2 0.3 0.012 15.2 0.2 1.5 1 0 0 1 1 1 1 RFPL defining motif (RDM) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:170362-170685 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~170362-170685 Kinetochor_Ybp2 PF08568.5 g120628.t1 - 0.065 11.4 0.1 0.094 10.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family, YAP/Alf4/glomulin | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:345366-346223 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~345366-346223 Copper-bind PF00127.15 g86136.t1 - 0.019 15.1 0 0.042 14 0 1.6 1 0 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:268409-269005 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~268409-269005 Ketoacyl-synt_C PF02801.17 g28164.t1 - 0.037 13.8 1 0.14 12 0.1 2 1 1 1 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain | Ref_seq=scaffold740_contigs=1, transcript_loc=scaffold740_contigs=1:11953-12270 Augustus predicted protein sequence Tobacco scaffold740_contigs=1~11953-12270 DUF3337 PF11816.3 g74757.t1 - 0.024 14 0.6 0.026 13.9 0.4 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:32433-32788 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~32433-32788 PAT1 PF09770.4 g14713.t1 - 6.2 4.9 11.4 7.4 4.6 7.9 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:31241-31777 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~31241-31777 FAM220 PF15487.1 g11141.t1 - 0.0019 17.6 0.7 0.0022 17.4 0.5 1.1 1 0 0 1 1 1 1 FAM220 family | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:199899-200330 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~199899-200330 DUF3401 PF11881.3 g104745.t1 - 0.12 11.6 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3401) | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:171950-172317 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~171950-172317 Nucleoplasmin PF03066.10 g66021.t1 - 0.14 11.6 7.3 0.15 11.5 5.1 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:161083-161486 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~161083-161486 Pollen_Ole_e_I PF01190.12 g60565.t1 - 0.0051 16.6 0.3 0.0068 16.2 0.2 1.2 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:588770-589219 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~588770-589219 Nodulin_late PF07127.6 g127382.t1 - 0.21 11.7 0.2 0.21 11.7 0.1 2.3 2 0 0 2 2 2 0 Late nodulin protein | Ref_seq=scaffold2823_contigs=1, transcript_loc=scaffold2823_contigs=1:42806-43624 Augustus predicted protein sequence Tobacco scaffold2823_contigs=1~42806-43624 OmpH PF03938.9 g113778.t1 - 0.11 12.4 5.2 0.16 11.8 3.5 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:404789-406203 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~404789-406203 Peptidase_M17 PF00883.16 g32246.t1 - 0.093 11.5 0 0.093 11.5 0 1.1 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:4097-4739 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~4097-4739 Neisseria_TspB PF05616.8 g38652.t1 - 1.3 7.3 13.8 1.7 6.9 9.6 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:256591-257325 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~256591-257325 Nucleoplasmin PF03066.10 g94027.t1 - 0.41 10.1 3.4 0.39 10.2 2.3 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:440037-440390 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~440037-440390 PLDc PF00614.17 g95535.t1 - 0.066 13 0.1 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 Phospholipase D Active site motif | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:445348-445934 Augustus predicted protein sequence Tobacco scaffold2060_contigs=14~445348-445934 Fez1 PF06818.10 g25799.t1 - 0.0036 17.3 2.2 0.0048 16.9 1.5 1.3 1 0 0 1 1 1 1 Fez1 | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:80256-81943 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~80256-81943 DBD_Tnp_Mut PF03108.10 g82778.t1 - 0.014 14.9 0.3 0.035 13.6 0.2 1.7 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:58812-59270 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~58812-59270 4F5 PF04419.9 g99611.t1 - 0.096 13.4 3.3 0.18 12.5 2.3 1.4 1 0 0 1 1 1 0 4F5 protein family | Ref_seq=scaffold2175_contigs=10, transcript_loc=scaffold2175_contigs=10:80887-83476 Augustus predicted protein sequence Tobacco scaffold2175_contigs=10~80887-83476 PYRIN PF02758.11 g117625.t1 - 0.015 14.9 0.4 0.024 14.3 0.3 1.4 1 0 0 1 1 1 0 PAAD/DAPIN/Pyrin domain | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:189174-189449 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~189174-189449 MGS PF02142.17 g73967.t1 - 0.04 13.8 0 0.05 13.5 0 1.1 1 0 0 1 1 1 0 MGS-like domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:298762-299040 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~298762-299040 DUF2514 PF10721.4 g52170.t1 - 0.0023 17.6 5.9 0.0029 17.3 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2514) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:597869-598334 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~597869-598334 CENP-T PF15511.1 g81437.t1 - 1.7 7.8 11.3 2 7.5 7.9 1.2 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:246904-248895 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~246904-248895 ParB PF08775.5 g106967.t1 - 0.013 15.8 0.4 0.015 15.6 0.3 1.1 1 0 0 1 1 1 0 ParB family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:149459-149707 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~149459-149707 zf-CCHC PF00098.18 g129912.t1 - 0.00004 23.3 1.2 0.00004 23.3 0.8 2.1 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold3194_contigs=1, transcript_loc=scaffold3194_contigs=1:335-697 Augustus predicted protein sequence Tobacco scaffold3194_contigs=1~335-697 Plug PF07715.10 g86114.t1 - 0.054 13.8 0.7 0.082 13.2 0.1 1.5 2 0 0 2 2 2 0 TonB-dependent Receptor Plug Domain | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:214939-215751 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~214939-215751 RVT_3 PF13456.1 g47997.t1 - 0.13 12 0 0.2 11.4 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1103_contigs=14, transcript_loc=scaffold1103_contigs=14:370411-370698 Augustus predicted protein sequence Tobacco scaffold1103_contigs=14~370411-370698 HSBP1 PF06825.7 g82105.t1 - 0.65 9.6 7.3 27 4.4 3 3.2 2 1 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:669876-670172 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~669876-670172 UBA PF00627.26 g56279.t1 - 0.057 13.2 0.1 6.7 6.7 0 3.1 3 0 0 3 3 3 0 UBA/TS-N domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:371386-373042 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~371386-373042 SWIM PF04434.12 g2972.t1 - 0.0033 16.8 2.2 0.007 15.8 1.5 1.6 1 0 0 1 1 1 1 SWIM zinc finger | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:2376-2821 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~2376-2821 Neisseria_TspB PF05616.8 g61379.t1 - 2 6.6 14 0.11 10.8 5.5 1.7 1 1 1 2 2 2 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:98446-99443 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~98446-99443 RVT_3 PF13456.1 g24473.t1 - 0.000000063 32.3 0 0.000000072 32.1 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:29197-29421 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~29197-29421 Pox_A6 PF04924.7 g6092.t1 - 0.079 11.7 0 0.11 11.2 0 1.1 1 0 0 1 1 1 0 Poxvirus A6 protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:32205-32825 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~32205-32825 CVNH PF08881.5 g122443.t1 - 0.018 15.2 0.1 0.027 14.6 0 1.3 1 0 0 1 1 1 0 CVNH domain | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:23903-24316 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~23903-24316 DUF385 PF04075.9 g92099.t1 - 0.023 14.6 0.2 0.038 13.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF385) | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:229137-229664 Augustus predicted protein sequence Tobacco scaffold1982_contigs=6~229137-229664 BNIP3 PF06553.7 g8990.t1 - 0.11 11.8 0 0.15 11.4 0 1.1 1 0 0 1 1 1 0 BNIP3 | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:9569-9859 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~9569-9859 HTH_5 PF01022.15 g64593.t1 - 0.009 15.6 0.6 2 8.1 0 2.7 2 1 1 3 3 3 2 Bacterial regulatory protein, arsR family | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:64013-65071 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~64013-65071 CCDC92 PF14916.1 g93411.t1 - 0.2 11.2 2 0.39 10.3 1.4 1.4 1 0 0 1 1 1 0 Coiled-coil domain of unknown function | Ref_seq=scaffold2016_contigs=10, transcript_loc=scaffold2016_contigs=10:123934-124407 Augustus predicted protein sequence Tobacco scaffold2016_contigs=10~123934-124407 NPV_P10 PF05531.7 g119110.t1 - 0.29 11.4 1.5 7.8 6.8 1 2.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:953878-954268 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~953878-954268 Tachykinin PF02202.11 g75185.t1 - 0.51 10.1 0 0.51 10.1 0 2.7 3 0 0 3 3 3 0 Tachykinin family | Ref_seq=scaffold1568_contigs=6, transcript_loc=scaffold1568_contigs=6:119104-119352 Augustus predicted protein sequence Tobacco scaffold1568_contigs=6~119104-119352 DUF1136 PF06582.7 g96721.t1 - 0.086 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Repeat of unknown function (DUF1136) | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:231247-231480 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~231247-231480 zf-CCHC_4 PF14392.1 g63795.t1 - 0.014 15 1.3 0.027 14.1 0.9 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:106257-107000 Augustus predicted protein sequence Tobacco scaffold1381_contigs=7~106257-107000 PBP_sp32 PF07222.7 g89177.t1 - 0.059 12.5 1.1 0.081 12 0.7 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:3897-4684 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~3897-4684 YqfQ PF14181.1 g78867.t1 - 0.7 9.9 7.4 0.46 10.5 4.3 1.3 1 1 0 1 1 1 0 YqfQ-like protein | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:146753-147256 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~146753-147256 Motilin_assoc PF04643.7 g17032.t1 - 0.033 13.6 0 0.041 13.3 0 1.2 1 0 0 1 1 1 0 Motilin/ghrelin-associated peptide | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:322178-322396 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~322178-322396 DUF749 PF05370.6 g6762.t1 - 0.0055 16.6 0 0.13 12.2 0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF749) | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:113959-116631 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~113959-116631 zf-CCHC PF00098.18 g64062.t1 - 0.0037 17.1 0.9 0.0054 16.6 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:263582-263923 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~263582-263923 Mod_r PF07200.8 g86673.t1 - 0.26 11.1 2.4 0.66 9.8 1.7 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:160024-160620 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~160024-160620 Methyltrans_SAM PF10672.4 g118529.t1 - 0.032 13 0 0.038 12.8 0 1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:126347-126945 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~126347-126945 DUF3951 PF13131.1 g84461.t1 - 0.6 9.9 2.6 1.5 8.6 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3951) | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:35603-35986 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~35603-35986 Myosin_tail_1 PF01576.14 g13810.t1 - 0.022 12.5 0.1 0.026 12.2 0.1 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:128871-129536 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~128871-129536 Med12-LCEWAV PF12145.3 g114878.t1 - 0.028 12.9 0.1 0.029 12.8 0.1 1 1 0 0 1 1 1 0 Eukaryotic Mediator 12 subunit domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:262134-262658 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~262134-262658 zinc-ribbons_6 PF07191.7 g107227.t1 - 0.089 12.6 1.5 0.12 12.1 1.1 1.2 1 0 0 1 1 1 0 zinc-ribbons | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:974346-974964 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~974346-974964 zf-CCHC_4 PF14392.1 g88828.t1 - 0.0032 17.1 0.5 0.0079 15.8 0.3 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1936_contigs=10, transcript_loc=scaffold1936_contigs=10:202565-203297 Augustus predicted protein sequence Tobacco scaffold1936_contigs=10~202565-203297 HTH_8 PF02954.14 g61097.t1 - 0.11 12 0.8 0.45 10 0.1 2.3 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:38493-39389 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~38493-39389 ATHILA PF03078.10 g56147.t1 - 0.00078 18.1 0 0.0015 17.2 0 1.4 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:150061-150879 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~150061-150879 Stm1_N PF09598.5 g43802.t1 - 1.6 9.5 7.1 4.6 8 4.9 1.9 1 1 0 1 1 1 0 Stm1 | Ref_seq=scaffold1029_contigs=5, transcript_loc=scaffold1029_contigs=5:30560-31431 Augustus predicted protein sequence Tobacco scaffold1029_contigs=5~30560-31431 FAM47 PF14642.1 g105630.t1 - 0.059 12.6 0.2 0.068 12.4 0.1 1.1 1 0 0 1 1 1 0 FAM47 family | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:90706-91074 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~90706-91074 Zein-binding PF04576.10 g123670.t1 - 0.093 12.8 0 0.12 12.5 0 1.2 1 0 0 1 1 1 0 Zein-binding | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:250166-250390 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~250166-250390 DUF1911 PF08929.5 g63588.t1 - 0.011 16.4 0 0.15 12.7 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF1911) | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:47296-48662 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~47296-48662 FH2 PF02181.18 g64431.t1 - 0.044 12.6 0.3 0.053 12.3 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:48319-48723 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~48319-48723 CDRN PF05174.7 g73782.t1 - 0.016 14.6 1.2 11 5.5 0 3.3 4 0 0 4 4 4 0 Cysteine-rich D. radiodurans N terminus | Ref_seq=scaffold1547_contigs=6, transcript_loc=scaffold1547_contigs=6:11393-12030 Augustus predicted protein sequence Tobacco scaffold1547_contigs=6~11393-12030 RP1-2 PF12042.3 g83478.t1 - 0.046 13.3 6.9 0.054 13.1 4.8 1.1 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:54028-54673 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~54028-54673 YbjM PF11045.3 g123263.t1 - 0.011 15.4 0 0.014 15.1 0 1.1 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:193476-193751 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~193476-193751 Toxin_24 PF08094.6 g74946.t1 - 2.1 8 7.5 9.5 5.9 1.1 2.7 2 1 0 2 2 2 0 Conotoxin TVIIA/GS family | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:150863-153100 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~150863-153100 NFRKB_winged PF14465.1 g100448.t1 - 0.12 12.2 0 0.13 12.1 0 1.3 1 0 0 1 1 1 0 NFRKB Winged Helix-like | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:81219-81530 Augustus predicted protein sequence Tobacco scaffold2189_contigs=3~81219-81530 PriCT_1 PF08708.6 g27736.t1 - 0.11 12.3 0 0.18 11.6 0 1.4 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:208110-208653 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~208110-208653 Dicty_CTDC PF00526.13 g80384.t1 - 0.14 12 0.1 0.39 10.6 0.1 1.8 1 0 0 1 1 1 0 Dictyostelium (slime mold) repeat | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:173995-174641 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~173995-174641 ATP-synt_S1 PF05827.7 g111622.t1 - 0.015 14.6 0.2 0.018 14.3 0.1 1 1 0 0 1 1 1 0 Vacuolar ATP synthase subunit S1 (ATP6S1) | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:64628-64972 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~64628-64972 FliJ PF02050.11 g35581.t1 - 0.0035 17.3 4.2 0.0035 17.3 2.9 1.6 2 0 0 2 2 2 1 Flagellar FliJ protein | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:126934-127707 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~126934-127707 Kdo_hydroxy PF11004.3 g129343.t1 - 0.024 13.6 0.5 0.041 12.8 0.4 1.3 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:2661-3179 Augustus predicted protein sequence Tobacco scaffold2942_contigs=1~2661-3179 YvrJ PF12841.2 g75779.t1 - 2.5 7.4 4 19 4.6 0.2 2.2 2 0 0 2 2 2 0 YvrJ protein family | Ref_seq=scaffold1596_contigs=1, transcript_loc=scaffold1596_contigs=1:9467-10159 Augustus predicted protein sequence Tobacco scaffold1596_contigs=1~9467-10159 DUF2694 PF10904.3 g110239.t1 - 0.018 15 0.1 0.044 13.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2537_contigs=5, transcript_loc=scaffold2537_contigs=5:17249-18046 Augustus predicted protein sequence Tobacco scaffold2537_contigs=5~17249-18046 Pardaxin PF07425.6 g24329.t1 - 0.1 11.9 0.2 0.21 11 0.1 1.5 1 0 0 1 1 1 0 Pardaxin | Ref_seq=scaffold670_contigs=7, transcript_loc=scaffold670_contigs=7:81137-81699 Augustus predicted protein sequence Tobacco scaffold670_contigs=7~81137-81699 Folate_carrier PF01770.13 g93367.t1 - 0.21 10 0.5 0.23 9.9 0.3 1 1 0 0 1 1 1 0 Reduced folate carrier | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:143472-143884 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~143472-143884 zf-BED PF02892.10 g53259.t1 - 0.093 12.5 1.5 0.21 11.3 1 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:130379-131014 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~130379-131014 RVP_2 PF08284.6 g112041.t1 - 0.00000081 29 0.2 0.0000015 28.1 0.2 1.4 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:17152-20072 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~17152-20072 DMPK_coil PF08826.5 g68080.t1 - 0.0022 17.8 6.7 0.03 14.2 1 2.3 1 1 1 2 2 2 2 DMPK coiled coil domain like | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:70783-71223 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~70783-71223 MKT1_C PF12246.3 g58219.t1 - 0.077 11.9 0 0.098 11.6 0 1.1 1 0 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:307814-308173 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~307814-308173 zf-CCHC PF00098.18 g22227.t1 - 0.00067 19.4 1.8 0.0014 18.4 1.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:23357-23899 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~23357-23899 IQ PF00612.22 g5478.t1 - 0.044 13.4 1.5 0.95 9.2 0 2.3 2 0 0 2 2 2 0 IQ calmodulin-binding motif | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:139946-141031 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~139946-141031 PIF1 PF05970.9 g6378.t1 - 0.043 12.7 0.1 0.046 12.6 0.1 1 1 0 0 1 1 1 0 PIF1-like helicase | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:20153-20410 Augustus predicted protein sequence Tobacco scaffold296_contigs=6~20153-20410 gag_pre-integrs PF13976.1 g120696.t1 - 0.0016 18 0.3 0.002 17.7 0.2 1.3 1 1 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:82489-83376 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~82489-83376 Cor1 PF04803.7 g48740.t1 - 0.0038 16.9 0.1 0.0045 16.7 0.1 1.1 1 0 0 1 1 1 1 Cor1/Xlr/Xmr conserved region | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:243915-244142 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~243915-244142 UBN2 PF14223.1 g117667.t1 - 0.038 13.7 0.1 0.052 13.3 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2691_contigs=13, transcript_loc=scaffold2691_contigs=13:3398-4046 Augustus predicted protein sequence Tobacco scaffold2691_contigs=13~3398-4046 zf-BED PF02892.10 g112656.t1 - 0.035 13.8 0.8 0.079 12.7 0.6 1.7 1 0 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2614_contigs=14, transcript_loc=scaffold2614_contigs=14:64541-65485 Augustus predicted protein sequence Tobacco scaffold2614_contigs=14~64541-65485 LmjF365940-deam PF14421.1 g107496.t1 - 0.00073 18.9 0.2 0.00092 18.6 0.1 1 1 0 0 1 1 1 1 A distinct subfamily of CDD/CDA-like deaminases | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:149423-149764 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~149423-149764 RNA_pol_A_CTD PF03118.10 g89479.t1 - 0.0033 16.7 0 2.7 7.4 0 2.3 2 0 0 2 2 2 2 Bacterial RNA polymerase, alpha chain C terminal domain | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:11703-12867 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~11703-12867 MHCassoc_trimer PF08831.5 g74749.t1 - 0.01 15.6 1 0.016 15 0.7 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:26061-26390 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~26061-26390 HALZ PF02183.13 g21812.t1 - 2.7 7.8 6.5 6.5 6.5 0.7 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:247690-248463 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~247690-248463 UBN2_2 PF14227.1 g126165.t1 - 0.00052 19.5 0 0.00093 18.7 0 1.4 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2788_contigs=1, transcript_loc=scaffold2788_contigs=1:103682-105540 Augustus predicted protein sequence Tobacco scaffold2788_contigs=1~103682-105540 NGF PF00243.13 g86026.t1 - 0.035 13.8 0.1 0.042 13.5 0 1.2 1 0 0 1 1 1 0 Nerve growth factor family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:35363-36405 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~35363-36405 Endotoxin_C PF03944.9 g118258.t1 - 0.14 12.3 0.3 0.16 12 0.2 1.1 1 0 0 1 1 1 0 delta endotoxin | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:222055-222318 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~222055-222318 Caa3_CtaG PF09678.5 g14191.t1 - 0.058 12.3 0.5 0.093 11.6 0.4 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:290189-291409 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~290189-291409 zf-CCHC PF00098.18 g71969.t1 - 0.000016 24.5 1.5 0.000033 23.5 1 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:250455-250982 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~250455-250982 NNMT_PNMT_TEMT PF01234.12 g28277.t1 - 0.011 14.6 0 0.012 14.5 0 1 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:107952-108203 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~107952-108203 DUF4290 PF14123.1 g77517.t1 - 0.059 12.5 0.1 0.093 11.9 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:264697-265471 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~264697-265471 CesA PF11439.3 g113525.t1 - 0.024 14.5 0.1 0.061 13.2 0 1.7 1 1 1 2 2 2 0 Type III secretion system filament chaperone CesA | Ref_seq=scaffold2635_contigs=10, transcript_loc=scaffold2635_contigs=10:17913-19100 Augustus predicted protein sequence Tobacco scaffold2635_contigs=10~17913-19100 DUF2845 PF11006.3 g81214.t1 - 0.07 12.9 0 0.084 12.7 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2845) | Ref_seq=scaffold1726_contigs=2, transcript_loc=scaffold1726_contigs=2:426-695 Augustus predicted protein sequence Tobacco scaffold1726_contigs=2~426-695 bZIP_1 PF00170.16 g105167.t1 - 0.011 15.6 5.5 0.029 14.3 3.8 1.7 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:458485-459079 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~458485-459079 zf-CCHC PF00098.18 g46464.t1 - 0.000031 23.7 4.5 0.000031 23.7 3.1 1.8 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:481449-482081 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~481449-482081 DUF3123 PF11321.3 g30595.t1 - 0.078 13.2 0 0.11 12.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3123) | Ref_seq=scaffold776_contigs=2, transcript_loc=scaffold776_contigs=2:9955-13004 Augustus predicted protein sequence Tobacco scaffold776_contigs=2~9955-13004 DUF2624 PF11116.3 g101490.t1 - 0.036 14.5 0.3 0.047 14.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2624) | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:148422-148769 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~148422-148769 Snapin_Pallidin PF14712.1 g2248.t1 - 0.021 15.1 0.9 0.063 13.5 0.7 1.8 1 0 0 1 1 1 0 Snapin/Pallidin | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:73882-74746 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~73882-74746 DUF3645 PF12359.3 g15662.t1 - 0.74 9 3.1 1.5 8 2.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:27475-27687 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~27475-27687 Histone_HNS PF00816.16 g36189.t1 - 0.16 12.4 5.2 0.36 11.3 3.6 1.5 1 1 0 1 1 1 0 H-NS histone family | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:455375-456714 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~455375-456714 zf-BED PF02892.10 g126961.t1 - 0.065 12.9 4.8 0.061 13 1.1 2.3 1 1 1 2 2 2 0 BED zinc finger | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:24570-25096 Augustus predicted protein sequence Tobacco scaffold2810_contigs=1~24570-25096 DUF4172 PF13776.1 g53677.t1 - 0.082 13 0.1 0.1 12.6 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:83565-83825 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~83565-83825 Viral_cys_rich PF08008.7 g125789.t1 - 0.0076 15.7 0.1 0.011 15.2 0 1.2 1 0 0 1 1 1 1 Viral cysteine rich | Ref_seq=scaffold2780_contigs=1, transcript_loc=scaffold2780_contigs=1:25932-26222 Augustus predicted protein sequence Tobacco scaffold2780_contigs=1~25932-26222 DUF2866 PF11065.3 g24947.t1 - 0.11 12.4 0 0.21 11.5 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2866) | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:67106-70015 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~67106-70015 DUF1179 PF06678.6 g118454.t1 - 0.035 14.3 0.1 0.04 14.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1179) | Ref_seq=scaffold2702_contigs=9, transcript_loc=scaffold2702_contigs=9:160265-160753 Augustus predicted protein sequence Tobacco scaffold2702_contigs=9~160265-160753 Pol_alpha_B_N PF08418.5 g59075.t1 - 0.02 14.4 1.8 0.019 14.5 1.2 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal | Ref_seq=scaffold1277_contigs=20, transcript_loc=scaffold1277_contigs=20:188691-189149 Augustus predicted protein sequence Tobacco scaffold1277_contigs=20~188691-189149 Microvir_lysis PF04517.7 g123635.t1 - 0.13 12 0.2 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Microvirus lysis protein (E), C terminus | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:183970-184648 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~183970-184648 Atg14 PF10186.4 g115283.t1 - 0.00051 19 6.8 0.0006 18.8 4.7 1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:394373-395305 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~394373-395305 Glycoprotein_G PF00802.14 g109256.t1 - 0.043 12.9 2.4 2.4 7.2 0.3 2.2 1 1 1 2 2 2 0 Pneumovirus attachment glycoprotein G | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:9047-10484 Augustus predicted protein sequence Tobacco scaffold2491_contigs=9~9047-10484 RVT_3 PF13456.1 g111344.t1 - 0.0043 16.7 0 0.0067 16.1 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:182246-184991 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~182246-184991 TBCC PF07986.7 g12670.t1 - 0.058 12.8 0 0.086 12.2 0 1.1 1 0 0 1 1 1 0 Tubulin binding cofactor C | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:240842-241504 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~240842-241504 Tropomyosin PF00261.15 g97096.t1 - 0.061 12.4 0.1 0.077 12 0.1 1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:535163-536293 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~535163-536293 ATP-synt_D PF01813.12 g102779.t1 - 0.022 14.3 0.7 0.032 13.7 0 1.6 2 0 0 2 2 2 0 ATP synthase subunit D | Ref_seq=scaffold2268_contigs=6, transcript_loc=scaffold2268_contigs=6:14303-14680 Augustus predicted protein sequence Tobacco scaffold2268_contigs=6~14303-14680 DUF3363 PF11843.3 g114863.t1 - 0.0064 15.1 2.4 0.0066 15.1 1.7 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:241371-241634 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~241371-241634 TPR_MLP1_2 PF07926.7 g94505.t1 - 0.0015 18.2 11.6 0.0017 18.1 7.6 1.4 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:33616-35005 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~33616-35005 Telomere_reg-2 PF10193.4 g93595.t1 - 0.065 13.4 0.1 0.068 13.4 0.1 1.1 1 0 0 1 1 1 0 Telomere length regulation protein | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:195754-196011 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~195754-196011 DUF4201 PF13870.1 g75108.t1 - 0.0012 18.3 5.3 0.066 12.6 1.3 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold1567_contigs=2, transcript_loc=scaffold1567_contigs=2:15016-15693 Augustus predicted protein sequence Tobacco scaffold1567_contigs=2~15016-15693 MCC-bdg_PDZ PF10506.4 g20775.t1 - 0.045 13.5 1.6 0.072 12.9 0.7 1.6 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:227567-228062 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~227567-228062 zf-C5HC2 PF02928.11 g64700.t1 - 0.078 13 1.7 0.12 12.4 1.2 1.3 1 0 0 1 1 1 0 C5HC2 zinc finger | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:302239-302514 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~302239-302514 ATHILA PF03078.10 g98797.t1 - 0.0000088 24.5 0 0.0000094 24.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:208440-208838 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~208440-208838 Ribosomal_60s PF00428.14 g80636.t1 - 0.33 11.3 2.8 0.43 10.9 1.9 1.2 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:5341-5645 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~5341-5645 CAF-1_p150 PF11600.3 g92055.t1 - 0.00057 19.3 31.2 0.00073 18.9 21.6 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1982_contigs=6, transcript_loc=scaffold1982_contigs=6:67404-68147 Augustus predicted protein sequence Tobacco scaffold1982_contigs=6~67404-68147 CheR PF01739.13 g111302.t1 - 0.017 14.4 0.2 0.018 14.3 0.2 1.1 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:64419-64736 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~64419-64736 Cation_ATPase_C PF00689.16 g5568.t1 - 0.021 14.3 5.7 0.018 14.5 3.4 1.3 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:363130-363579 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~363130-363579 PBP_sp32 PF07222.7 g71231.t1 - 0.024 13.8 0.5 0.023 13.9 0.3 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:299376-299750 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~299376-299750 DUF2763 PF10961.3 g62568.t1 - 0.0012 19.1 1.3 0.0022 18.3 0.9 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2763) | Ref_seq=scaffold1351_contigs=1, transcript_loc=scaffold1351_contigs=1:80757-84551 Augustus predicted protein sequence Tobacco scaffold1351_contigs=1~80757-84551 Zea_mays_MuDR PF05928.6 g21450.t1 - 0.13 11.6 0 0.14 11.5 0 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:489522-490621 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~489522-490621 SOG2 PF10428.4 g5147.t1 - 0.099 11.2 0.8 0.12 11 0.5 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:24202-24890 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~24202-24890 SDP_N PF12278.3 g84636.t1 - 0.049 13.2 0.7 0.054 13.1 0.5 1 1 0 0 1 1 1 0 Sex determination protein N terminal | Ref_seq=scaffold1825_contigs=2, transcript_loc=scaffold1825_contigs=2:29564-29764 Augustus predicted protein sequence Tobacco scaffold1825_contigs=2~29564-29764 FoP_duplication PF13865.1 g88976.t1 - 3.9 7.9 11.5 4.9 7.6 8 1.1 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:326153-326494 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~326153-326494 TBCC PF07986.7 g62115.t1 - 0.96 8.8 4.8 1.2 8.5 3.3 1.1 1 0 0 1 1 1 0 Tubulin binding cofactor C | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:12868-13086 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~12868-13086 zf-CCHC_3 PF13917.1 g41877.t1 - 0.0018 17.9 2.9 0.003 17.2 2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:141792-142468 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~141792-142468 DivIVA PF05103.8 g108831.t1 - 4.7 7.2 15.8 12 5.9 11 1.7 1 1 0 1 1 1 0 DivIVA protein | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:322139-322501 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~322139-322501 FoP_duplication PF13865.1 g45303.t1 - 4.1 7.9 9.5 5.6 7.4 6.6 1.3 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:137135-137374 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~137135-137374 IFP_35_N PF07334.8 g36281.t1 - 0.00011 22 0.7 0.46 10.4 0.1 2.6 2 0 0 2 2 2 2 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold882_contigs=2, transcript_loc=scaffold882_contigs=2:8312-10461 Augustus predicted protein sequence Tobacco scaffold882_contigs=2~8312-10461 Limkain-b1 PF11608.3 g49025.t1 - 0.023 14.4 0 0.03 14 0 1.1 1 0 0 1 1 1 0 Limkain b1 | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:213415-214460 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~213415-214460 Gon7 PF08738.5 g54981.t1 - 0.44 10.5 3.6 0.64 10 2.5 1.3 1 0 0 1 1 1 0 Gon7 family | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:286903-287103 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~286903-287103 DUF1347 PF07079.6 g64630.t1 - 0.015 13.5 0.1 0.017 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:174561-175046 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~174561-175046 RVP_2 PF08284.6 g97831.t1 - 0.000051 23.2 0 0.000076 22.6 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:242313-242777 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~242313-242777 CAF-1_p150 PF11600.3 g55547.t1 - 0.0021 17.4 64.3 0.0024 17.2 44.5 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:368969-369478 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~368969-369478 Spt4 PF06093.8 g20833.t1 - 0.15 11.9 0.1 0.73 9.7 0 2 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:333427-333888 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~333427-333888 CCDC-167 PF15188.1 g90244.t1 - 0.011 15.6 0.7 0.018 14.9 0.5 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:438228-438671 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~438228-438671 TMEM240 PF15207.1 g70256.t1 - 0.094 12.2 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 TMEM240 family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:155195-156000 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~155195-156000 RVT_3 PF13456.1 g98091.t1 - 0.0000067 25.7 0 0.00001 25.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2152_contigs=6, transcript_loc=scaffold2152_contigs=6:71396-72729 Augustus predicted protein sequence Tobacco scaffold2152_contigs=6~71396-72729 MscS_porin PF12795.2 g59443.t1 - 0.039 13.2 0.2 0.058 12.7 0.1 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:149206-149784 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~149206-149784 CobT PF06213.7 g123307.t1 - 0.054 12.6 4.1 0.064 12.3 2.8 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:109962-111967 Augustus predicted protein sequence Tobacco scaffold2756_contigs=5~109962-111967 Cas_Csy2 PF09614.5 g25026.t1 - 0.049 12.8 0.3 5.1 6.2 0.1 2 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Csy2) | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:111359-112120 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~111359-112120 DUF4219 PF13961.1 g109191.t1 - 0.0004 19.7 0.2 0.00061 19.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:295750-295974 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~295750-295974 TT_ORF1 PF02956.9 g9130.t1 - 2.4 6.5 4 3.3 6 2.8 1.1 1 0 0 1 1 1 0 TT viral orf 1 | Ref_seq=scaffold352_contigs=11, transcript_loc=scaffold352_contigs=11:291756-292484 Augustus predicted protein sequence Tobacco scaffold352_contigs=11~291756-292484 NAM-associated PF14303.1 g96953.t1 - 0.081 13.2 3.8 0.087 13.1 2.7 1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:181424-181657 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~181424-181657 DUF605 PF04652.11 g4733.t1 - 1.6 8 12.4 1.8 7.9 8.6 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:37166-37597 Augustus predicted protein sequence Tobacco scaffold261_contigs=2~37166-37597 CAF-1_p150 PF11600.3 g96734.t1 - 0.38 10 31 0.43 9.9 21.5 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:257075-257296 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~257075-257296 5-FTHF_cyc-lig PF01812.15 g1760.t1 - 0.023 14.4 0.6 0.035 13.8 0.4 1.5 1 1 0 1 1 1 0 5-formyltetrahydrofolate cyclo-ligase family | Ref_seq=scaffold193_contigs=2, transcript_loc=scaffold193_contigs=2:111062-111710 Augustus predicted protein sequence Tobacco scaffold193_contigs=2~111062-111710 DUF1138 PF06592.8 g88677.t1 - 0.061 13.3 0.4 0.1 12.6 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1138) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:144544-145005 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~144544-145005 DUF1985 PF09331.6 g95678.t1 - 0.0006 19.6 0 0.0012 18.7 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:65560-67632 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~65560-67632 DUF3446 PF11928.3 g101855.t1 - 0.33 11.1 8.3 0.51 10.5 5.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3446) | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:28445-28735 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~28445-28735 Med3 PF11593.3 g72023.t1 - 2.1 7.4 7.4 2.2 7.4 5.2 1.1 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:124279-124827 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~124279-124827 Fijivirus_P9-2 PF06837.6 g42957.t1 - 0.029 13.5 0 0.031 13.4 0 1 1 0 0 1 1 1 0 Fijivirus P9-2 protein | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:16467-16818 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~16467-16818 IDO PF01231.13 g3551.t1 - 0.078 11.3 0 0.086 11.2 0 1 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:2775-2987 Augustus predicted protein sequence Tobacco scaffold236_contigs=3~2775-2987 ATHILA PF03078.10 g33937.t1 - 6.5E-009 34.8 0 7.1E-009 34.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold835_contigs=3, transcript_loc=scaffold835_contigs=3:25993-26361 Augustus predicted protein sequence Tobacco scaffold835_contigs=3~25993-26361 Vfa1 PF08432.5 g41810.t1 - 0.0019 18.2 3.8 0.0024 17.9 2.6 1.1 1 0 0 1 1 1 1 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:37164-37775 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~37164-37775 DUF4514 PF14986.1 g50815.t1 - 0.14 11.9 0.4 4.7 7.1 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:211999-212550 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~211999-212550 zf-XS PF03470.9 g130019.t1 - 0.012 15.5 4.3 2.3 8.3 0.2 2.4 2 0 0 2 2 2 0 XS zinc finger domain | Ref_seq=scaffold3329_contigs=1, transcript_loc=scaffold3329_contigs=1:1385-2351 Augustus predicted protein sequence Tobacco scaffold3329_contigs=1~1385-2351 FadA PF09403.5 g39536.t1 - 0.0081 16.1 4.7 0.011 15.7 3.2 1.1 1 0 0 1 1 1 1 Adhesion protein FadA | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:27351-27746 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~27351-27746 BLVR PF06375.6 g63370.t1 - 0.0034 17.2 4.1 0.0041 16.9 2.8 1.2 1 0 0 1 1 1 1 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:55754-56128 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~55754-56128 Img2 PF05046.9 g26671.t1 - 0.039 14.1 0.1 0.05 13.8 0 1.2 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:130521-130871 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~130521-130871 zf-CCHC PF00098.18 g100668.t1 - 0.00018 21.2 2.4 0.00033 20.4 1.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:213918-214316 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~213918-214316 CobT PF06213.7 g103015.t1 - 0.0054 15.8 15.9 0.0073 15.4 11 1.1 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT | Ref_seq=scaffold2278_contigs=9, transcript_loc=scaffold2278_contigs=9:175918-177826 Augustus predicted protein sequence Tobacco scaffold2278_contigs=9~175918-177826 DUF1660 PF07874.6 g42668.t1 - 0.14 12.4 0 0.24 11.6 0 1.3 1 0 0 1 1 1 0 Prophage protein (DUF1660) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:298656-300004 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~298656-300004 zf-TRM13_CCCH PF11722.3 g88233.t1 - 0.00025 20.3 0 0.00036 19.8 0 1.3 1 0 0 1 1 1 1 CCCH zinc finger in TRM13 protein | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:4560-4925 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~4560-4925 DUF2316 PF10078.4 g47137.t1 - 0.12 12.4 0 0.14 12.1 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:103944-106229 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~103944-106229 CH PF00307.26 g73916.t1 - 0.063 13.3 0 0.078 13 0 1.2 1 0 0 1 1 1 0 Calponin homology (CH) domain | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:191623-191949 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~191623-191949 DUF2420 PF10336.4 g44468.t1 - 0.093 12.3 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:175513-175848 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~175513-175848 DBD_Tnp_Mut PF03108.10 g116582.t1 - 0.0000051 25.9 1.7 0.000028 23.6 1.2 2 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2671_contigs=3, transcript_loc=scaffold2671_contigs=3:93599-93988 Augustus predicted protein sequence Tobacco scaffold2671_contigs=3~93599-93988 RVT_2 PF07727.9 g110423.t1 - 0.0043 16 0.2 0.0054 15.7 0.2 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:111617-112033 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~111617-112033 zinc-ribbons_6 PF07191.7 g98199.t1 - 0.17 11.7 2.2 0.25 11.1 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbons | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:133890-134232 Augustus predicted protein sequence Tobacco scaffold2154_contigs=6~133890-134232 DUF948 PF06103.6 g80719.t1 - 0.074 12.9 0.1 0.19 11.5 0.1 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:177436-178289 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~177436-178289 CodY PF06018.9 g78708.t1 - 0.042 13.1 0 0.053 12.7 0 1.1 1 0 0 1 1 1 0 CodY GAF-like domain | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:13432-14996 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~13432-14996 IL5 PF02025.10 g73158.t1 - 0.062 13.3 0 0.074 13 0 1.1 1 0 0 1 1 1 0 Interleukin 5 | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:38030-38233 Augustus predicted protein sequence Tobacco scaffold1531_contigs=12~38030-38233 FlxA PF14282.1 g75477.t1 - 0.079 12.9 5.1 0.1 12.5 3.5 1.1 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:49402-49665 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~49402-49665 DUF713 PF05218.9 g62943.t1 - 0.036 13.8 0.3 0.07 12.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF713) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:71199-72137 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~71199-72137 DUF3934 PF13070.1 g115010.t1 - 0.062 13.5 2.7 0.095 12.9 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3934) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:205653-205979 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~205653-205979 Gly-rich_Ago1 PF12764.2 g37162.t1 - 0.055 14.1 1.3 0.096 13.3 0.9 1.3 1 0 0 1 1 1 0 Glycine-rich region of argonaut | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:296276-296608 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~296276-296608 DUF1512 PF07431.7 g99180.t1 - 0.0061 15.3 0 0.0068 15.1 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) | Ref_seq=scaffold2171_contigs=2, transcript_loc=scaffold2171_contigs=2:55723-56875 Augustus predicted protein sequence Tobacco scaffold2171_contigs=2~55723-56875 ATHILA PF03078.10 g119074.t1 - 8.9E-009 34.4 0 0.000000011 34.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:899871-900101 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~899871-900101 Med9 PF07544.8 g47706.t1 - 0.54 10 6.5 0.41 10.4 0.9 2.2 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:597465-598013 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~597465-598013 DUF1985 PF09331.6 g53503.t1 - 0.000000013 34.7 0.6 0.000000049 32.8 0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:485628-487392 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~485628-487392 TspO_MBR PF03073.10 g65179.t1 - 0.052 13 3.4 0.061 12.8 2.4 1.1 1 0 0 1 1 1 0 TspO/MBR family | Ref_seq=scaffold1400_contigs=2, transcript_loc=scaffold1400_contigs=2:6556-7568 Augustus predicted protein sequence Tobacco scaffold1400_contigs=2~6556-7568 FH2 PF02181.18 g81483.t1 - 0.02 13.7 0.2 0.038 12.8 0 1.4 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:75760-76545 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~75760-76545 DUF4172 PF13776.1 g67685.t1 - 0.11 12.6 0.3 0.23 11.5 0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:13740-14078 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~13740-14078 MatP PF06303.7 g73188.t1 - 0.087 12.7 0 0.094 12.6 0 1.1 1 0 0 1 1 1 0 Organiser of macrodomain of Terminus of chromosome | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:17066-17302 Augustus predicted protein sequence Tobacco scaffold1532_contigs=5~17066-17302 TMEM210 PF15195.1 g7620.t1 - 0.78 9.8 2.8 1 9.5 2 1.1 1 0 0 1 1 1 0 TMEM210 family | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:478796-479616 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~478796-479616 SoxD PF04267.7 g76456.t1 - 0.037 13.8 0.8 0.073 12.9 0.6 1.4 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:389644-391840 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~389644-391840 DUF904 PF06005.7 g72138.t1 - 0.14 12.4 0 0.19 12 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:347000-347239 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~347000-347239 Gamma-thionin PF00304.15 g37035.t1 - 0.061 13.3 2.1 0.13 12.3 0.1 2 2 0 0 2 2 2 0 Gamma-thionin family | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:183333-183971 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~183333-183971 DUF4576 PF15144.1 g16878.t1 - 0.081 12.5 0 0.12 12 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4576) | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:56771-57468 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~56771-57468 zf-MYND PF01753.13 g36620.t1 - 1.1 9.1 10.7 0.13 12.1 4.2 1.8 2 0 0 2 2 2 0 MYND finger | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:135022-135486 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~135022-135486 KRTAP PF11759.3 g190.t1 - 4.1 7.7 10.2 7.9 6.8 7.1 1.6 1 1 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold7_contigs=9, transcript_loc=scaffold7_contigs=9:3573-3824 Augustus predicted protein sequence Tobacco scaffold7_contigs=9~3573-3824 VHS PF00790.14 g20865.t1 - 0.018 14.6 0 0.021 14.4 0 1.1 1 0 0 1 1 1 0 VHS domain | Ref_seq=scaffold584_contigs=2, transcript_loc=scaffold584_contigs=2:30990-31217 Augustus predicted protein sequence Tobacco scaffold584_contigs=2~30990-31217 Gag_p24 PF00607.15 g14856.t1 - 0.023 14.2 0.2 0.062 12.8 0 1.7 2 0 0 2 2 2 0 gag gene protein p24 (core nucleocapsid protein) | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:73519-73842 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~73519-73842 DBD_Tnp_Mut PF03108.10 g48126.t1 - 3.1E-009 36.2 0.1 5.6E-009 35.4 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:272898-274180 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~272898-274180 SR-25 PF10500.4 g60383.t1 - 1.3 8.4 9.8 1.7 8 6.8 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:188059-188349 Augustus predicted protein sequence Tobacco scaffold1308_contigs=16~188059-188349 DUF4100 PF13352.1 g19321.t1 - 0.039 13.3 0 0.039 13.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4100) | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:19981-20268 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~19981-20268 Mrr_cat PF04471.7 g101050.t1 - 0.095 12.5 0.2 0.66 9.7 0 1.8 1 1 1 2 2 2 0 Restriction endonuclease | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:193441-193704 Augustus predicted protein sequence Tobacco scaffold2207_contigs=13~193441-193704 DUF695 PF05117.7 g106775.t1 - 0.018 14.9 0.2 0.021 14.7 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF695) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:561565-561987 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~561565-561987 LRR_4 PF12799.2 g17841.t1 - 0.0036 16.9 0.1 0.028 14 0 2.1 2 0 0 2 2 2 1 Leucine Rich repeats (2 copies) | Ref_seq=scaffold537_contigs=2, transcript_loc=scaffold537_contigs=2:1839-2228 Augustus predicted protein sequence Tobacco scaffold537_contigs=2~1839-2228 NYD-SP28_assoc PF14775.1 g121056.t1 - 0.066 12.9 1.1 0.16 11.6 0.6 2 1 1 1 2 2 2 0 Sperm tail C-terminal domain | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:287892-288443 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~287892-288443 ATHILA PF03078.10 g78435.t1 - 0.0000012 27.4 0 0.0000014 27.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1648_contigs=6, transcript_loc=scaffold1648_contigs=6:42510-43982 Augustus predicted protein sequence Tobacco scaffold1648_contigs=6~42510-43982 DUF4172 PF13776.1 g100491.t1 - 0.13 12.3 1.9 0.81 9.8 0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold2197_contigs=7, transcript_loc=scaffold2197_contigs=7:8237-8914 Augustus predicted protein sequence Tobacco scaffold2197_contigs=7~8237-8914 NPCBM_assoc PF10633.4 g37761.t1 - 0.14 12.1 0.1 0.26 11.3 0 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:345870-348428 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~345870-348428 DUF4276 PF14103.1 g87975.t1 - 0.12 12.1 0.1 0.13 12.1 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:73078-73284 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~73078-73284 Rep_Org_C PF06926.6 g91806.t1 - 0.11 12.5 1.3 0.23 11.5 0.5 1.8 1 1 0 1 1 1 0 Putative replisome organiser protein C-terminus | Ref_seq=scaffold1979_contigs=3, transcript_loc=scaffold1979_contigs=3:68635-69279 Augustus predicted protein sequence Tobacco scaffold1979_contigs=3~68635-69279 RNA_pol_Rpb5_N PF03871.9 g80274.t1 - 0.13 12.6 0.2 0.24 11.8 0.2 1.4 1 1 0 1 1 1 0 RNA polymerase Rpb5, N-terminal domain | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:27094-27342 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~27094-27342 zf-CCHC PF00098.18 g36237.t1 - 0.045 13.7 0.4 0.045 13.7 0.3 4 4 1 0 4 4 4 0 Zinc knuckle | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:566655-566873 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~566655-566873 PT PF04886.7 g112544.t1 - 0.14 11.5 1.6 0.2 10.9 0.3 1.8 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:140670-141161 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~140670-141161 Rad50_zn_hook PF04423.9 g91552.t1 - 0.00021 20.6 2.6 0.3 10.5 0.1 2.4 2 0 0 2 2 2 2 Rad50 zinc hook motif | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:229802-233013 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~229802-233013 Invasin_D3 PF09134.5 g110500.t1 - 0.0098 15.7 0 4.1 7.3 0 2.1 1 1 1 2 2 2 2 Invasin, domain 3 | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:120777-121371 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~120777-121371 RtcR PF06956.6 g21272.t1 - 0.051 12.8 0 6.2 6.1 0 2 1 1 1 2 2 2 0 Regulator of RNA terminal phosphate cyclase | Ref_seq=scaffold592_contigs=8, transcript_loc=scaffold592_contigs=8:13750-14499 Augustus predicted protein sequence Tobacco scaffold592_contigs=8~13750-14499 DUF2462 PF09495.5 g89726.t1 - 0.033 14.9 1.7 0.033 14.9 1.2 3.6 2 1 0 3 3 3 0 Protein of unknown function (DUF2462) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:245011-247160 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~245011-247160 DUF3763 PF12592.3 g92430.t1 - 0.25 11 1.7 0.59 9.8 0.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3763) | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:43178-43636 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~43178-43636 Gag_spuma PF03276.9 g90256.t1 - 0.022 13.1 2.5 0.027 12.8 1.7 1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:453529-454146 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~453529-454146 zf-CCHC PF00098.18 g96249.t1 - 0.096 12.6 0.9 0.12 12.4 0 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:229094-229309 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~229094-229309 DUF4201 PF13870.1 g106554.t1 - 0.0033 16.8 8.2 0.0065 15.9 5.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:69984-70619 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~69984-70619 UBN2 PF14223.1 g55677.t1 - 0.015 15 0 0.019 14.7 0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:223213-224392 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~223213-224392 DUF1679 PF07914.6 g20761.t1 - 0.16 10.5 0 0.23 10 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:200215-201494 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~200215-201494 KfrA_N PF11740.3 g15790.t1 - 0.11 12.9 0.5 0.47 10.9 0 2.1 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:301814-302146 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~301814-302146 DUF4131 PF13567.1 g38970.t1 - 5.5 6.3 7.1 12 5.2 4.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold947_contigs=9, transcript_loc=scaffold947_contigs=9:28474-30132 Augustus predicted protein sequence Tobacco scaffold947_contigs=9~28474-30132 NAM-associated PF14303.1 g24134.t1 - 0.0017 18.6 5.1 0.0024 18.1 3.5 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold664_contigs=6, transcript_loc=scaffold664_contigs=6:194937-195296 Augustus predicted protein sequence Tobacco scaffold664_contigs=6~194937-195296 DUF2457 PF10446.4 g112350.t1 - 0.00051 18.8 23.5 0.00059 18.6 16.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:154550-156500 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~154550-156500 WD40 PF00400.27 g45617.t1 - 0.07 13 0.1 0.15 12 0.1 1.5 1 0 0 1 1 1 0 WD domain, G-beta repeat | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:224360-224938 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~224360-224938 DUF3867 PF12983.2 g96065.t1 - 0.017 15 0.1 5.1 7 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3867) | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:100907-101623 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~100907-101623 FtsX PF02687.16 g28327.t1 - 0.36 10.5 5.4 0.89 9.3 3.8 1.6 1 1 0 1 1 1 0 FtsX-like permease family | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:75561-75851 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~75561-75851 RNR_inhib PF08591.5 g106425.t1 - 0.18 12.7 2.3 0.2 12.6 0.5 1.8 1 1 1 2 2 2 0 Ribonucleotide reductase inhibitor | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:170835-171434 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~170835-171434 Rho_RNA_bind PF07497.7 g56334.t1 - 0.069 12.7 0 0.5 10 0 1.9 1 1 1 2 2 2 0 Rho termination factor, RNA-binding domain | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:468974-469327 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~468974-469327 ATHILA PF03078.10 g6072.t1 - 0.0042 15.7 0 0.0046 15.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:2502-2822 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~2502-2822 Tropomyosin PF00261.15 g49209.t1 - 0.12 11.5 1.7 0.17 10.9 1.2 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:58083-58754 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~58083-58754 Pollen_Ole_e_I PF01190.12 g105951.t1 - 0.00021 21 0 0.00026 20.7 0 1.2 1 0 0 1 1 1 1 Pollen proteins Ole e I like | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1162929-1163399 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~1162929-1163399 Fea1 PF07692.6 g97307.t1 - 0.13 11 0 0.14 10.9 0 1 1 0 0 1 1 1 0 Low iron-inducible periplasmic protein | Ref_seq=scaffold2132_contigs=4, transcript_loc=scaffold2132_contigs=4:148623-148895 Augustus predicted protein sequence Tobacco scaffold2132_contigs=4~148623-148895 zf-CCHC PF00098.18 g112606.t1 - 0.00051 19.8 0.3 0.00085 19.1 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2613_contigs=60, transcript_loc=scaffold2613_contigs=60:295838-296907 Augustus predicted protein sequence Tobacco scaffold2613_contigs=60~295838-296907 Fork_head_N PF08430.7 g33267.t1 - 0.017 15.5 2.8 0.02 15.3 1.9 1.1 1 0 0 1 1 1 0 Forkhead N-terminal region | Ref_seq=scaffold828_contigs=2, transcript_loc=scaffold828_contigs=2:197395-197715 Augustus predicted protein sequence Tobacco scaffold828_contigs=2~197395-197715 RVT_3 PF13456.1 g44933.t1 - 0.0002 21 0 0.0004 20.1 0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:37108-37631 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~37108-37631 IL12p40_C PF10420.4 g44558.t1 - 0.12 12.4 0 0.16 12.1 0 1.3 1 0 0 1 1 1 0 Cytokine interleukin-12p40 C-terminus | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:401490-401807 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~401490-401807 DBD_Tnp_Mut PF03108.10 g29274.t1 - 2.6E-009 36.4 0 4.5E-009 35.7 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:125619-127775 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~125619-127775 zf-BED PF02892.10 g12588.t1 - 0.33 10.7 2 0.76 9.5 1.4 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:298585-299121 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~298585-299121 cobW PF02492.14 g81283.t1 - 0.07 12.5 0 0.093 12.1 0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain | Ref_seq=scaffold1728_contigs=6, transcript_loc=scaffold1728_contigs=6:55755-57237 Augustus predicted protein sequence Tobacco scaffold1728_contigs=6~55755-57237 ICAM_N PF03921.9 g30800.t1 - 0.046 13.2 0.1 0.88 9 0 2.1 2 0 0 2 2 2 0 Intercellular adhesion molecule (ICAM), N-terminal domain | Ref_seq=scaffold781_contigs=18, transcript_loc=scaffold781_contigs=18:93276-94070 Augustus predicted protein sequence Tobacco scaffold781_contigs=18~93276-94070 LRS4 PF10422.4 g103612.t1 - 0.05 12.9 1.4 0.054 12.8 1 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 | Ref_seq=scaffold2307_contigs=7, transcript_loc=scaffold2307_contigs=7:33731-34242 Augustus predicted protein sequence Tobacco scaffold2307_contigs=7~33731-34242 Remorin_N PF03766.8 g44124.t1 - 0.015 15 1.3 0.025 14.3 0.9 1.4 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:49006-49530 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~49006-49530 Sec3-PIP2_bind PF15277.1 g114694.t1 - 0.12 12.2 0 0.23 11.3 0 1.5 2 0 0 2 2 2 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:207337-207903 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~207337-207903 EGF_CA PF07645.10 g789.t1 - 0.067 13.1 0.6 0.096 12.6 0.1 1.5 2 0 0 2 2 2 0 Calcium-binding EGF domain | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:50783-51058 Augustus predicted protein sequence Tobacco scaffold52_contigs=2~50783-51058 PspB PF06667.7 g17816.t1 - 0.00018 21.3 1.6 0.00032 20.5 0.2 1.8 1 1 1 2 2 2 1 Phage shock protein B | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:280671-281017 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~280671-281017 Minor_capsid_3 PF12691.2 g129983.t1 - 0.00027 20.6 0 0.81 9.3 0 2.6 1 1 2 3 3 3 2 Minor capsid protein from bacteriophage | Ref_seq=scaffold3296_contigs=1, transcript_loc=scaffold3296_contigs=1:1038-3053 Augustus predicted protein sequence Tobacco scaffold3296_contigs=1~1038-3053 PY_rept_46 PF09689.5 g79301.t1 - 4.3 7.7 6.8 0.42 10.9 0.8 2.1 2 1 0 2 2 2 0 Plasmodium yoelii repeat (PY_rept_46) | Ref_seq=scaffold1690_contigs=25, transcript_loc=scaffold1690_contigs=25:377179-377544 Augustus predicted protein sequence Tobacco scaffold1690_contigs=25~377179-377544 TAXi_N PF14543.1 g112072.t1 - 0.041 13.8 2.4 0.049 13.5 1.7 1.1 1 0 0 1 1 1 0 Xylanase inhibitor N-terminal | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:95251-95697 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~95251-95697 Mito_fiss_reg PF05308.6 g121949.t1 - 0.054 12.8 0.8 0.052 12.9 0.5 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2739_contigs=11, transcript_loc=scaffold2739_contigs=11:119354-119739 Augustus predicted protein sequence Tobacco scaffold2739_contigs=11~119354-119739 Latrophilin PF02354.11 g91006.t1 - 0.049 12.3 0.1 0.052 12.2 0 1 1 0 0 1 1 1 0 Latrophilin Cytoplasmic C-terminal region | Ref_seq=scaffold1966_contigs=2, transcript_loc=scaffold1966_contigs=2:34508-34762 Augustus predicted protein sequence Tobacco scaffold1966_contigs=2~34508-34762 DUF2121 PF09894.4 g9318.t1 - 0.018 14.3 1.2 0.03 13.6 0.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) | Ref_seq=scaffold357_contigs=6, transcript_loc=scaffold357_contigs=6:156170-156893 Augustus predicted protein sequence Tobacco scaffold357_contigs=6~156170-156893 HNH_2 PF13391.1 g40644.t1 - 1.2 8.9 5.3 1.7 8.4 3.6 1.5 1 1 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:206140-206469 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~206140-206469 DUF4294 PF14127.1 g19061.t1 - 0.19 11.2 4.1 0.23 11 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4294) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:217285-217587 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~217285-217587 Glyco_hydro_39 PF01229.12 g12745.t1 - 0.07 11.5 3.4 0.08 11.3 2.4 1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:385660-385947 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~385660-385947 VLPT PF07122.6 g6376.t1 - 0.11 12.1 0.2 2.2 7.9 0 2.3 2 0 0 2 2 2 0 Variable length PCR target protein (VLPT) | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:10184-10561 Augustus predicted protein sequence Tobacco scaffold296_contigs=6~10184-10561 PsbP PF01789.11 g116166.t1 - 0.0014 18 0.4 0.091 12.1 0 2.1 2 0 0 2 2 2 2 PsbP | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:13610-14718 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~13610-14718 NADH_4Fe-4S PF10589.4 g53997.t1 - 0.16 11.1 1 1.9 7.7 0.1 2.4 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold1194_contigs=2, transcript_loc=scaffold1194_contigs=2:7019-7734 Augustus predicted protein sequence Tobacco scaffold1194_contigs=2~7019-7734 Peptidase_M28 PF04389.12 g70282.t1 - 0.078 12.7 0.1 0.091 12.4 0.1 1 1 0 0 1 1 1 0 Peptidase family M28 | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:214060-214299 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~214060-214299 gag_pre-integrs PF13976.1 g28014.t1 - 0.00000013 31.1 1.3 0.00000027 30.1 0.9 1.5 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:761715-763231 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~761715-763231 Candida_ALS PF05792.8 g46283.t1 - 2.2 8.4 5 3.4 7.8 3.4 1.2 1 0 0 1 1 1 0 Candida agglutinin-like (ALS) | Ref_seq=scaffold1065_contigs=2, transcript_loc=scaffold1065_contigs=2:818-1054 Augustus predicted protein sequence Tobacco scaffold1065_contigs=2~818-1054 Ribosomal_S3_C PF00189.15 g38089.t1 - 0.006 16.7 0 0.0089 16.2 0 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:169892-170302 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~169892-170302 Chorion_S16 PF05836.7 g117796.t1 - 0.0081 16 0 0.065 13.1 0 2.1 1 1 0 2 2 2 1 Chorion protein S16 | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:113935-117102 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~113935-117102 DUF648 PF04890.8 g96896.t1 - 0.0034 16.6 1.1 0.0042 16.3 0.8 1 1 0 0 1 1 1 1 Family of unknown function (DUF648) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:54876-55232 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~54876-55232 DUF1803 PF08820.5 g80465.t1 - 0.029 14 0.1 0.062 13 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:66831-68167 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~66831-68167 DUF1082 PF06449.6 g124734.t1 - 0.082 12.8 1 0.14 12 0 1.8 2 0 0 2 2 2 0 Mitochondrial domain of unknown function (DUF1082) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:32573-32860 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~32573-32860 DUF2235 PF09994.4 g80801.t1 - 0.055 12.8 0.2 0.071 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:48664-49505 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~48664-49505 HrpB1_HrpK PF09613.5 g80454.t1 - 0.047 13.1 0 0.053 13 0 1.1 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:49907-50158 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~49907-50158 QLQ PF08880.6 g26690.t1 - 0.67 9.4 0.1 0.67 9.4 0.1 3.2 3 1 1 4 4 4 0 QLQ | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:155337-155983 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~155337-155983 Tis11B_N PF04553.7 g122049.t1 - 0.15 12.2 0.4 0.16 12.1 0.2 1.1 1 0 0 1 1 1 0 Tis11B like protein, N terminus | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:93194-93406 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~93194-93406 Transposase_28 PF04195.7 g72358.t1 - 0.024 13.9 0.2 0.055 12.7 0.1 1.5 2 0 0 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:880427-881545 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~880427-881545 PITH PF06201.8 g106637.t1 - 0.073 12.8 0.4 0.085 12.6 0.3 1.1 1 0 0 1 1 1 0 PITH domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:251988-252254 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~251988-252254 Neuropeptide_S PF14993.1 g16869.t1 - 0.017 14.7 0.2 0.074 12.7 0 2.1 2 0 0 2 2 2 0 Neuropeptide S precursor protein | Ref_seq=scaffold524_contigs=3, transcript_loc=scaffold524_contigs=3:45559-47658 Augustus predicted protein sequence Tobacco scaffold524_contigs=3~45559-47658 zf-C4pol PF14260.1 g60140.t1 - 0.096 12.7 0.5 0.13 12.2 0.3 1.2 1 0 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:86239-86921 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~86239-86921 DUF4286 PF14114.1 g50316.t1 - 0.0066 16.6 0.5 0.052 13.8 0.3 2 1 1 0 1 1 1 1 Domain of unknown function (DUF4286) | Ref_seq=scaffold1137_contigs=5, transcript_loc=scaffold1137_contigs=5:28102-28622 Augustus predicted protein sequence Tobacco scaffold1137_contigs=5~28102-28622 DBD_Tnp_Mut PF03108.10 g122078.t1 - 0.00013 21.4 0.1 0.00024 20.5 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:177863-181050 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~177863-181050 zf-CCHC_5 PF14787.1 g107099.t1 - 0.000092 21.8 1.7 0.00024 20.5 1.2 1.8 1 1 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:638974-639623 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~638974-639623 Laminin_EGF PF00053.19 g25414.t1 - 0.11 12.4 2.7 4.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Laminin EGF-like (Domains III and V) | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:245869-246507 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~245869-246507 EspA PF03433.8 g90268.t1 - 0.044 13.2 0 0.078 12.4 0 1.4 1 0 0 1 1 1 0 EspA-like secreted protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:483512-484411 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~483512-484411 HSBP1 PF06825.7 g51081.t1 - 0.018 14.6 0.2 0.2 11.2 0 2 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:68005-68475 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~68005-68475 Trefoil PF00088.13 g35086.t1 - 0.1 12.2 0.3 0.53 9.9 0 2.1 2 0 0 2 2 2 0 Trefoil (P-type) domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:14333-17704 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~14333-17704 Sigma54_activat PF00158.21 g70580.t1 - 0.052 13 0.1 0.06 12.8 0.1 1.1 1 0 0 1 1 1 0 Sigma-54 interaction domain | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:503351-505159 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~503351-505159 Caerin_1 PF07440.7 g63609.t1 - 0.27 11.1 1 0.44 10.4 0.7 1.3 1 0 0 1 1 1 0 Caerin 1 protein | Ref_seq=scaffold1377_contigs=3, transcript_loc=scaffold1377_contigs=3:84883-85209 Augustus predicted protein sequence Tobacco scaffold1377_contigs=3~84883-85209 Ureide_permease PF07168.6 g50010.t1 - 0.048 12.3 0 0.052 12.2 0 1.1 1 0 0 1 1 1 0 Ureide permease | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:45445-45747 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~45445-45747 Pneumo_att_G PF05539.6 g1427.t1 - 1.4 8.1 6.5 1.7 7.9 4.5 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:105802-106439 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~105802-106439 BRCT PF00533.21 g72814.t1 - 0.017 15.2 0.1 0.55 10.4 0 2.2 1 1 1 2 2 2 0 BRCA1 C Terminus (BRCT) domain | Ref_seq=scaffold1521_contigs=7, transcript_loc=scaffold1521_contigs=7:40365-40727 Augustus predicted protein sequence Tobacco scaffold1521_contigs=7~40365-40727 Adeno_PX PF05829.7 g65456.t1 - 0.089 12.3 4 0.16 11.4 2.8 1.4 1 0 0 1 1 1 0 Adenovirus late L2 mu core protein (Protein X) | Ref_seq=scaffold1411_contigs=11, transcript_loc=scaffold1411_contigs=11:144752-145051 Augustus predicted protein sequence Tobacco scaffold1411_contigs=11~144752-145051 Treslin_N PF15292.1 g66835.t1 - 0.0077 14.1 0 0.0085 14 0 1.1 1 0 0 1 1 1 1 Treslin N-terminus | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:76705-77282 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~76705-77282 FIVAR PF07554.8 g35116.t1 - 0.072 13.3 0 0.11 12.7 0 1.2 1 0 0 1 1 1 0 Uncharacterised Sugar-binding Domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:63249-63557 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~63249-63557 Alveol-reg_P311 PF11092.3 g74581.t1 - 0.027 14.4 5.1 12 5.9 0.1 4 1 1 3 4 4 4 0 Neuronal protein 3.1 (p311) | Ref_seq=scaffold1558_contigs=4, transcript_loc=scaffold1558_contigs=4:15145-16058 Augustus predicted protein sequence Tobacco scaffold1558_contigs=4~15145-16058 EzrA PF06160.7 g6947.t1 - 0.018 13.2 0.6 0.023 12.8 0.4 1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:156148-156459 Augustus predicted protein sequence Tobacco scaffold306_contigs=7~156148-156459 FAM47 PF14642.1 g34861.t1 - 0.15 11.3 3.2 0.16 11.2 2.2 1.2 1 0 0 1 1 1 0 FAM47 family | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:83712-84081 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~83712-84081 Metallothio_11 PF02066.10 g5695.t1 - 2.1 8.2 6.9 0.35 10.7 1.5 1.9 2 0 0 2 2 2 0 Metallothionein family 11 | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:221051-221296 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~221051-221296 DUF1929 PF09118.6 g121832.t1 - 0.4 10.7 2.8 0.48 10.5 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1929) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:498531-498800 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~498531-498800 DUF2730 PF10805.3 g39205.t1 - 0.067 12.9 0.6 0.99 9.1 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:106500-107472 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~106500-107472 MscS_porin PF12795.2 g104059.t1 - 0.031 13.6 1.8 0.035 13.4 1.3 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:244065-244406 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~244065-244406 DUF505 PF04458.7 g130453.t1 - 0.089 10.8 0 0.097 10.7 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) | Ref_seq=scaffold4563_contigs=1, transcript_loc=scaffold4563_contigs=1:1-228 Augustus predicted protein sequence Tobacco scaffold4563_contigs=1~1-228 MiaE_2 PF13794.1 g48065.t1 - 0.11 11.9 1 0.48 9.8 0.5 1.9 2 0 0 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:115372-116043 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~115372-116043 DUF3992 PF13157.1 g80619.t1 - 0.019 15.1 0.4 0.029 14.5 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3992) | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:179576-180417 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~179576-180417 LRS4 PF10422.4 g119703.t1 - 0.0015 17.9 0 0.0018 17.6 0 1.1 1 0 0 1 1 1 1 Monopolin complex subunit LRS4 | Ref_seq=scaffold2716_contigs=1, transcript_loc=scaffold2716_contigs=1:24061-24339 Augustus predicted protein sequence Tobacco scaffold2716_contigs=1~24061-24339 zf-CCHC PF00098.18 g44870.t1 - 0.000023 24.1 0.7 0.000033 23.6 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:79127-79506 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~79127-79506 CsoS2_M PF12288.3 g100573.t1 - 0.083 12 2.9 0.13 11.4 2 1.3 1 0 0 1 1 1 0 Carboxysome shell peptide mid-region | Ref_seq=scaffold2198_contigs=9, transcript_loc=scaffold2198_contigs=9:82795-83226 Augustus predicted protein sequence Tobacco scaffold2198_contigs=9~82795-83226 zf-CCHC PF00098.18 g10877.t1 - 0.00011 21.9 1 0.00017 21.3 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:97474-98120 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~97474-98120 Cwf_Cwc_15 PF04889.7 g111930.t1 - 0.041 13.5 0.9 0.045 13.4 0.6 1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:117662-117868 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~117662-117868 DUF2180 PF09947.4 g111544.t1 - 0.11 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:931309-931539 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~931309-931539 Delta_lysin PF05372.6 g122287.t1 - 0.1 12 0.1 0.27 10.6 0 1.7 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:71599-72393 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~71599-72393 ATHILA PF03078.10 g63218.t1 - 0.0002 20 0 0.00042 19 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:113737-114096 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~113737-114096 Peptidase_C62 PF12380.3 g47234.t1 - 0.054 12.3 0.1 0.13 11 0 1.6 1 1 0 1 1 1 0 Gill-associated viral 3C-like peptidase | Ref_seq=scaffold1090_contigs=11, transcript_loc=scaffold1090_contigs=11:46575-47060 Augustus predicted protein sequence Tobacco scaffold1090_contigs=11~46575-47060 MMTV_SAg PF01054.12 g26886.t1 - 0.011 14.7 0.2 0.017 14 0.2 1.2 1 0 0 1 1 1 0 Mouse mammary tumour virus superantigen | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:471964-472939 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~471964-472939 ATHILA PF03078.10 g73027.t1 - 0.0082 14.7 0 0.034 12.7 0 1.9 3 0 0 3 3 3 1 ATHILA ORF-1 family | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:81790-82604 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~81790-82604 CCER1 PF15482.1 g75868.t1 - 0.0051 16.4 0.1 0.0062 16.1 0.1 1.2 1 0 0 1 1 1 1 Coiled-coil domain-containing glutamate-rich protein family 1 | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:40914-41536 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~40914-41536 Fzo_mitofusin PF04799.8 g121023.t1 - 0.0043 16.4 1.3 0.0043 16.4 0.9 1.6 2 0 0 2 2 2 1 fzo-like conserved region | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:229921-230451 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~229921-230451 Spc7 PF08317.6 g122530.t1 - 0.0065 15.1 0 0.063 11.9 0.5 1.9 1 1 1 2 2 2 1 Spc7 kinetochore protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:186450-187494 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~186450-187494 DUF2347 PF09804.4 g94548.t1 - 0.022 14 0 0.025 13.8 0 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2347) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:30456-30746 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~30456-30746 Rib_recp_KP_reg PF05104.7 g128925.t1 - 0.092 13.2 1.6 0.11 13 1.1 1 1 0 0 1 1 1 0 Ribosome receptor lysine/proline rich region | Ref_seq=scaffold2902_contigs=1, transcript_loc=scaffold2902_contigs=1:3400-3803 Augustus predicted protein sequence Tobacco scaffold2902_contigs=1~3400-3803 DBD_Tnp_Mut PF03108.10 g130131.t1 - 0.00018 21 0.1 0.00034 20.1 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold3516_contigs=1, transcript_loc=scaffold3516_contigs=1:553-1137 Augustus predicted protein sequence Tobacco scaffold3516_contigs=1~553-1137 Gemini_AL2 PF01440.11 g2532.t1 - 0.038 14 1.2 0.15 12.1 0 2 2 0 0 2 2 2 0 Geminivirus AL2 protein | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:182871-183751 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~182871-183751 zf-RVT PF13966.1 g55524.t1 - 0.00099 19.3 0.1 0.00099 19.3 0.1 2.1 2 0 0 2 2 2 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:330420-330764 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~330420-330764 HHV6-IE PF03753.8 g82512.t1 - 0.13 9.7 0 0.14 9.6 0 1 1 0 0 1 1 1 0 Human herpesvirus 6 immediate early protein | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:133871-136673 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~133871-136673 A1_Propeptide PF07966.7 g61451.t1 - 0.029 14.1 0.2 0.076 12.8 0.2 1.8 2 0 0 2 2 2 0 A1 Propeptide | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:155871-156122 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~155871-156122 AlkA_N PF06029.6 g64881.t1 - 0.13 12.3 0 0.16 12 0 1.1 1 0 0 1 1 1 0 AlkA N-terminal domain | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:297319-297870 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~297319-297870 PEX11 PF05648.9 g47681.t1 - 0.071 12.3 0 0.095 11.9 0 1.1 1 0 0 1 1 1 0 Peroxisomal biogenesis factor 11 (PEX11) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:505876-506247 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~505876-506247 Herpes_BLRF2 PF05812.7 g18751.t1 - 0.0036 17 0.7 0.0051 16.6 0.5 1.2 1 0 0 1 1 1 1 Herpesvirus BLRF2 protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:656275-656774 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~656275-656774 SR-25 PF10500.4 g11134.t1 - 0.41 10 5 0.56 9.6 3.5 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:173766-175091 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~173766-175091 ATHILA PF03078.10 g6487.t1 - 1.8E-013 49.9 0 2E-013 49.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold297_contigs=3, transcript_loc=scaffold297_contigs=3:136993-137532 Augustus predicted protein sequence Tobacco scaffold297_contigs=3~136993-137532 DUF641 PF04859.7 g64207.t1 - 0.011 15.4 1.4 0.015 15 0.8 1.5 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:135410-135649 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~135410-135649 Amidase PF01425.16 g35530.t1 - 0.086 11.6 0.9 0.097 11.5 0.6 1.1 1 0 0 1 1 1 0 Amidase | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:297185-297784 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~297185-297784 Integrin_b_cyt PF08725.6 g71287.t1 - 0.015 14.6 0.7 0.025 13.9 0.5 1.5 1 0 0 1 1 1 0 Integrin beta cytoplasmic domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:455330-455608 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~455330-455608 DUF848 PF05852.6 g80456.t1 - 0.0015 18.4 1.4 0.0016 18.3 0.9 1.1 1 0 0 1 1 1 1 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:50892-51143 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~50892-51143 Spc7_N PF15402.1 g46451.t1 - 1.5 6.7 7.6 1.7 6.5 5.3 1 1 0 0 1 1 1 0 N-terminus of kinetochore NMS complex subunit Spc7 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:451910-452873 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~451910-452873 SNARE PF05739.14 g21618.t1 - 0.00048 19.7 1 0.00086 18.9 0.7 1.4 1 0 0 1 1 1 1 SNARE domain | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:145519-145815 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~145519-145815 TrbC_Ftype PF09673.5 g10123.t1 - 0.035 13.7 0.1 0.052 13.1 0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:66117-66581 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~66117-66581 DUF3451 PF11933.3 g89706.t1 - 0.063 13 1.4 0.068 12.9 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3451) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:202525-202821 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~202525-202821 CAF-1_p150 PF11600.3 g71572.t1 - 0.042 13.2 33.3 0.047 13 23.1 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:47596-48000 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~47596-48000 Dpy-30 PF05186.8 g47569.t1 - 0.051 13 0.5 0.54 9.7 0 2.1 2 0 0 2 2 2 0 Dpy-30 motif | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:262798-263025 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~262798-263025 PACT_coil_coil PF10495.4 g76260.t1 - 0.05 13.5 0.5 0.14 12 0.4 1.9 1 1 0 1 1 1 0 Pericentrin-AKAP-450 domain of centrosomal targeting protein | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:25094-25701 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~25094-25701 ATHILA PF03078.10 g20663.t1 - 0.00000011 30.8 0 0.00000021 29.9 0 1.4 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:6387-7100 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~6387-7100 RNA_polI_A14 PF08203.6 g67509.t1 - 0.23 11.7 1.3 0.64 10.2 0.2 2 1 1 1 2 2 2 0 Yeast RNA polymerase I subunit RPA14 | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:7823-8547 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~7823-8547 Carla_C4 PF01623.12 g1029.t1 - 0.19 11.4 1.9 0.31 10.8 1.3 1.3 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:121091-121375 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~121091-121375 DUF1664 PF07889.7 g15499.t1 - 0.42 10.4 2.4 0.5 10.1 0.9 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:471697-472494 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~471697-472494 zf-CW PF07496.10 g46307.t1 - 0.13 12 2.6 0.25 11 1.8 1.4 1 0 0 1 1 1 0 CW-type Zinc Finger | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:21886-22426 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~21886-22426 ApoO PF09769.4 g50827.t1 - 0.024 14.3 0.2 0.027 14.1 0.1 1 1 0 0 1 1 1 0 Apolipoprotein O | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:260820-261107 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~260820-261107 ATHILA PF03078.10 g30078.t1 - 2.7E-011 42.7 1 0.000000078 31.3 0.1 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:374071-375015 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~374071-375015 DUF4578 PF15147.1 g118267.t1 - 0.073 13.4 0 0.11 12.8 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:243497-244072 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~243497-244072 NESP55 PF06390.7 g112093.t1 - 0.64 9.3 5.7 0.75 9.1 3.2 1.7 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:143142-143642 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~143142-143642 DUF4543 PF15076.1 g26985.t1 - 0.036 14.1 0 0.064 13.2 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4543) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:645888-646725 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~645888-646725 DUF3006 PF11213.3 g118593.t1 - 0.084 12.6 0.2 0.12 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:107465-107860 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~107465-107860 Transposase_28 PF04195.7 g66659.t1 - 0.055 12.7 2.1 0.14 11.4 0.1 2 1 1 1 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:359325-359878 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~359325-359878 DUF4099 PF13351.1 g2230.t1 - 0.094 12.6 0 12 5.8 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4099) | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:42217-42531 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~42217-42531 DMPK_coil PF08826.5 g70232.t1 - 0.057 13.3 3.5 0.17 11.8 0.7 2.1 2 0 0 2 2 2 0 DMPK coiled coil domain like | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:108019-108288 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~108019-108288 DUF1199 PF06712.6 g71722.t1 - 0.029 14.2 0.2 0.047 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:333316-335443 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~333316-335443 DUF4257 PF14074.1 g111791.t1 - 0.077 12.6 0.2 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4257) | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:229088-229979 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~229088-229979 rve_3 PF13683.1 g101285.t1 - 0.00046 19.6 0.1 0.00075 18.9 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:177545-178531 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~177545-178531 PqqD PF05402.7 g110983.t1 - 0.087 12.8 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:107442-107831 Augustus predicted protein sequence Tobacco scaffold2571_contigs=16~107442-107831 Nucleoplasmin PF03066.10 g110686.t1 - 0.3 10.5 6 0.33 10.4 4.1 1.3 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:242870-245963 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~242870-245963 CAP_N PF01213.14 g53782.t1 - 0.1 11.8 3.8 0.11 11.7 2.7 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:117128-117469 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~117128-117469 Esterase_phd PF10503.4 g17268.t1 - 0.099 11.8 0 0.15 11.2 0 1.2 1 0 0 1 1 1 0 Esterase PHB depolymerase | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:300191-300692 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~300191-300692 POM121 PF15229.1 g2940.t1 - 0.026 13.9 12.5 0.029 13.7 8.6 1 1 0 0 1 1 1 0 POM121 family | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:87766-88223 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~87766-88223 IF2_assoc PF08364.6 g1351.t1 - 0.84 9.7 5.3 3 7.9 1.8 2.3 1 1 1 2 2 2 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:39805-40288 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~39805-40288 Spc24 PF08286.6 g109028.t1 - 0.15 11.7 0.3 0.15 11.7 0.2 1.1 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:5191-5430 Augustus predicted protein sequence Tobacco scaffold2473_contigs=16~5191-5430 RmuC PF02646.11 g84432.t1 - 0.071 11.9 0 0.073 11.8 0 1 1 0 0 1 1 1 0 RmuC family | Ref_seq=scaffold1821_contigs=10, transcript_loc=scaffold1821_contigs=10:323683-324054 Augustus predicted protein sequence Tobacco scaffold1821_contigs=10~323683-324054 DREPP PF05558.7 g47099.t1 - 0.076 12.8 1.6 0.084 12.7 1.1 1.1 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide | Ref_seq=scaffold1087_contigs=6, transcript_loc=scaffold1087_contigs=6:14350-16466 Augustus predicted protein sequence Tobacco scaffold1087_contigs=6~14350-16466 Cauli_DNA-bind PF03310.8 g27506.t1 - 0.049 13.4 0.1 0.072 12.9 0.1 1.2 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein | Ref_seq=scaffold727_contigs=8, transcript_loc=scaffold727_contigs=8:155914-156660 Augustus predicted protein sequence Tobacco scaffold727_contigs=8~155914-156660 APC_15aa PF05972.6 g117777.t1 - 0.001 18.8 0 27 5 0 3.5 3 0 0 3 3 3 3 APC 15 residue motif | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:74825-75828 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~74825-75828 Lentiviral_Tat PF02998.9 g116234.t1 - 0.011 15.5 0.3 0.027 14.3 0.1 1.6 2 0 0 2 2 2 0 Lentiviral Tat protein | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:236015-236430 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~236015-236430 Orexin_rec2 PF03827.8 g1803.t1 - 0.1 12.6 0.1 0.16 12 0.1 1.3 1 0 0 1 1 1 0 Orexin receptor type 2 | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:40840-41103 Augustus predicted protein sequence Tobacco scaffold194_contigs=2~40840-41103 Imm33 PF15580.1 g115542.t1 - 0.11 12 0.1 0.15 11.5 0 1.2 1 0 0 1 1 1 0 Immunity protein 33 | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:606767-607102 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~606767-607102 ComC PF03047.9 g55316.t1 - 0.11 11.9 0.4 0.22 10.9 0.3 1.7 1 0 0 1 1 1 0 COMC family | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:68071-69221 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~68071-69221 SUR7 PF06687.7 g44738.t1 - 0.045 13.3 0 0.046 13.2 0 1.1 1 0 0 1 1 1 0 SUR7/PalI family | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:182224-182454 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~182224-182454 HR1 PF02185.11 g29006.t1 - 0.12 12.1 1.8 0.21 11.3 1.2 1.3 1 0 0 1 1 1 0 Hr1 repeat | Ref_seq=scaffold753_contigs=1, transcript_loc=scaffold753_contigs=1:2090-2985 Augustus predicted protein sequence Tobacco scaffold753_contigs=1~2090-2985 Plexin_cytopl PF08337.7 g92407.t1 - 0.013 13.8 0.1 0.014 13.6 0.1 1 1 0 0 1 1 1 0 Plexin cytoplasmic RasGAP domain | Ref_seq=scaffold1987_contigs=1, transcript_loc=scaffold1987_contigs=1:3402-3737 Augustus predicted protein sequence Tobacco scaffold1987_contigs=1~3402-3737 DUF3261 PF11659.3 g15287.t1 - 0.28 10.7 3.7 0.77 9.3 2.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3261) | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:75371-76054 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~75371-76054 SOG2 PF10428.4 g114807.t1 - 4.8 5.7 6.6 5 5.6 4.6 1.3 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:144488-145111 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~144488-145111 Capsid_NCLDV PF04451.7 g88891.t1 - 0.015 14.3 0 0.019 14 0 1.1 1 0 0 1 1 1 0 Large eukaryotic DNA virus major capsid protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:28772-30534 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~28772-30534 ORF6N PF10543.4 g117811.t1 - 0.25 11.3 1 0.32 11 0.4 1.4 1 1 0 1 1 1 0 ORF6N domain | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:152655-153984 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~152655-153984 zf-ISL3 PF14690.1 g42481.t1 - 0.58 10.2 2.5 0.53 10.3 0.4 2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:145469-146447 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~145469-146447 Arena_glycoprot PF00798.13 g25391.t1 - 0.0072 14.7 2.6 0.0085 14.5 1.8 1.1 1 0 0 1 1 1 1 Arenavirus glycoprotein | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:191924-192742 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~191924-192742 DUF845 PF05820.6 g50011.t1 - 0.097 12.4 0 0.14 11.9 0 1.3 1 1 0 1 1 1 0 Baculovirus protein of unknown function (DUF845) | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:49001-49402 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~49001-49402 PetL PF05115.9 g39214.t1 - 0.064 13.1 2.4 0.12 12.2 1.7 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit VI (PetL) | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:141993-143334 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~141993-143334 Herpes_US12 PF05363.7 g102537.t1 - 0.082 13.4 0.1 0.1 13.1 0 1.1 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:28246-28467 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~28246-28467 IgG_binding_B PF01378.12 g64753.t1 - 0.2 11.4 1.5 0.31 10.8 1.1 1.4 1 0 0 1 1 1 0 B domain | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:68988-69326 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~68988-69326 DUF4290 PF14123.1 g32816.t1 - 0.043 13 0.4 0.061 12.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:49915-50409 Augustus predicted protein sequence Tobacco scaffold819_contigs=1~49915-50409 Cast PF10174.4 g3006.t1 - 0.012 13.7 3.3 0.014 13.5 2.3 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:99703-102136 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~99703-102136 DBD_Tnp_Mut PF03108.10 g44233.t1 - 0.00000055 29 0 0.00000098 28.2 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:64700-65839 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~64700-65839 ImmE5 PF11480.3 g28247.t1 - 0.068 12.9 0 0.086 12.6 0 1.3 1 0 0 1 1 1 0 Colicin-E5 Imm protein | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:31928-32182 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~31928-32182 GLTT PF01744.15 g18380.t1 - 0.033 13.6 0 3.7 7 0 3.5 4 0 0 4 4 4 0 GLTT repeat (6 copies) | Ref_seq=scaffold554_contigs=2, transcript_loc=scaffold554_contigs=2:3786-4209 Augustus predicted protein sequence Tobacco scaffold554_contigs=2~3786-4209 CENP-F_leu_zip PF10473.4 g65825.t1 - 0.026 14.3 5.6 0.32 10.8 1.4 2.4 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:180856-181537 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~180856-181537 DUF3159 PF11361.3 g8816.t1 - 0.00015 21.3 0.3 0.39 10.1 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3159) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:231610-232372 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~231610-232372 SlyX PF04102.7 g57464.t1 - 0.0021 18.3 5.6 0.004 17.5 3.9 1.4 1 0 0 1 1 1 1 SlyX | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:217357-217740 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~217357-217740 ETS_PEA3_N PF04621.8 g45381.t1 - 0.0092 15.2 0.3 0.01 15 0.2 1 1 0 0 1 1 1 1 PEA3 subfamily ETS-domain transcription factor N terminal domain | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:334914-335610 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~334914-335610 Chal_sti_synt_N PF00195.14 g63367.t1 - 0.079 12.1 0 0.09 12 0 1.1 1 0 0 1 1 1 0 Chalcone and stilbene synthases, N-terminal domain | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:53301-53700 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~53301-53700 DUF4219 PF13961.1 g35749.t1 - 0.058 12.8 0 0.097 12.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:286054-286859 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~286054-286859 TAFII28 PF04719.9 g77327.t1 - 0.11 12.3 0 0.11 12.2 0 1.2 1 0 0 1 1 1 0 hTAFII28-like protein conserved region | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:312906-313308 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~312906-313308 Muted PF14942.1 g48977.t1 - 0.03 14.1 0.1 0.036 13.9 0.1 1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:48263-48547 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~48263-48547 Reo_sigmaC PF04582.7 g84635.t1 - 0.026 13.7 1 0.03 13.4 0.7 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold1825_contigs=2, transcript_loc=scaffold1825_contigs=2:27472-27813 Augustus predicted protein sequence Tobacco scaffold1825_contigs=2~27472-27813 FTCD_C PF04961.7 g37938.t1 - 0.015 14.7 0.1 0.018 14.4 0.1 1.1 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:304168-305404 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~304168-305404 DUF591 PF04569.9 g113110.t1 - 0.17 11.9 5.8 0.27 11.3 4 1.4 1 0 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold2621_contigs=15, transcript_loc=scaffold2621_contigs=15:45250-45492 Augustus predicted protein sequence Tobacco scaffold2621_contigs=15~45250-45492 PsbP PF01789.11 g39177.t1 - 0.016 14.6 0 0.019 14.3 0 1.1 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:54848-55261 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~54848-55261 WND PF07861.6 g4589.t1 - 0.13 11.2 0 0.19 10.6 0 1.1 1 0 0 1 1 1 0 WisP family N-Terminal Region | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:241280-242714 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~241280-242714 FLYWCH_N PF15423.1 g28006.t1 - 0.12 12.5 0.7 0.19 11.8 0.5 1.3 1 0 0 1 1 1 0 FLYWCH-type zinc finger-containing protein | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:738088-738714 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~738088-738714 UCH_1 PF13423.1 g436.t1 - 0.16 11.3 2.7 0.17 11.3 1.9 1 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:156655-156930 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~156655-156930 zf-CCHC_4 PF14392.1 g103402.t1 - 0.00014 21.4 0.5 0.00021 20.8 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:399185-399867 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~399185-399867 CbiQ PF02361.11 g101324.t1 - 0.097 12.2 0 0.14 11.7 0 1.1 1 0 0 1 1 1 0 Cobalt transport protein | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:36244-36925 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~36244-36925 DUF2461 PF09365.5 g58591.t1 - 0.062 12.6 0 0.084 12.2 0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:245930-246684 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~245930-246684 DUF4257 PF14074.1 g77723.t1 - 0.058 13 0.1 0.076 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4257) | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:238350-240136 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~238350-240136 DUF4131 PF13567.1 g52034.t1 - 0.89 8.9 4.3 1.1 8.7 3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:233358-233804 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~233358-233804 Myelin-PO_C PF10570.4 g40434.t1 - 0.036 14.1 0.3 0.058 13.4 0.2 1.3 1 0 0 1 1 1 0 Myelin-PO cytoplasmic C-term p65 binding region | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:178844-182043 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~178844-182043 CENP-I PF07778.6 g113221.t1 - 0.032 12.4 0.3 0.037 12.2 0.2 1.1 1 0 0 1 1 1 0 Mis6 | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:94258-94809 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~94258-94809 NapD PF03927.8 g92670.t1 - 0.064 13 0 2.5 8 0 2.1 2 0 0 2 2 2 0 NapD protein | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:263156-264228 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~263156-264228 Minor_capsid_2 PF11114.3 g113044.t1 - 0.14 12 0.1 15 5.5 0 2.1 1 1 1 2 2 2 0 Minor capsid protein | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:228211-228691 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~228211-228691 RVT_3 PF13456.1 g9360.t1 - 0.02 14.6 0 0.032 13.9 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold359_contigs=5, transcript_loc=scaffold359_contigs=5:68698-69134 Augustus predicted protein sequence Tobacco scaffold359_contigs=5~68698-69134 Enkurin PF13864.1 g64711.t1 - 0.17 12 2.1 0.44 10.7 1.5 1.8 1 1 0 1 1 1 0 Calmodulin-binding | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:317171-317554 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~317171-317554 Herpes_UL49_5 PF05702.6 g122568.t1 - 0.31 10.9 3.5 0.38 10.6 2.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:275984-276298 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~275984-276298 DUF1583 PF07622.6 g5024.t1 - 0.0066 14.9 0 0.0072 14.8 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1583) | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:155461-158223 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~155461-158223 DUF2014 PF09427.5 g110200.t1 - 0.02 14 0.1 0.036 13.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2014) | Ref_seq=scaffold2530_contigs=9, transcript_loc=scaffold2530_contigs=9:59580-59942 Augustus predicted protein sequence Tobacco scaffold2530_contigs=9~59580-59942 DUF1682 PF07946.9 g118515.t1 - 0.013 14.3 2.8 0.013 14.3 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:79744-80136 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~79744-80136 Retrotrans_gag PF03732.12 g55148.t1 - 0.13 12.3 0 0.21 11.6 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:31196-31576 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~31196-31576 DUF4413 PF14372.1 g51062.t1 - 0.033 14.1 0.5 0.049 13.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4413) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:3208-3962 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~3208-3962 DUF2947 PF11163.3 g28695.t1 - 0.025 14.1 5.1 0.03 13.9 3.5 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2947) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:72262-73044 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~72262-73044 DUF1270 PF06900.6 g101817.t1 - 3.3 7.9 5.4 1.3 9.2 2.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) | Ref_seq=scaffold2222_contigs=6, transcript_loc=scaffold2222_contigs=6:105012-105398 Augustus predicted protein sequence Tobacco scaffold2222_contigs=6~105012-105398 DUF1283 PF06932.6 g123951.t1 - 0.029 14.3 0.1 0.038 14 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:960574-962859 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~960574-962859 zf-C4pol PF14260.1 g72208.t1 - 0.034 14.1 0.9 0.034 14.1 0.6 1.6 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:517116-517907 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~517116-517907 DUF1347 PF07079.6 g68062.t1 - 0.0089 14.2 0 0.0091 14.2 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold1466_contigs=3, transcript_loc=scaffold1466_contigs=3:18373-18657 Augustus predicted protein sequence Tobacco scaffold1466_contigs=3~18373-18657 DUF1725 PF08333.6 g74750.t1 - 0.012 14.9 0.4 0.11 11.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:26727-27092 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~26727-27092 DUF1816 PF08846.5 g93022.t1 - 0.023 14.3 0 0.039 13.6 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1816) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:524520-524900 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~524520-524900 PWWP PF00855.12 g764.t1 - 0.057 13.6 0.3 0.064 13.4 0.2 1.2 1 0 0 1 1 1 0 PWWP domain | Ref_seq=scaffold51_contigs=2, transcript_loc=scaffold51_contigs=2:98015-98404 Augustus predicted protein sequence Tobacco scaffold51_contigs=2~98015-98404 BacteriocIIc_cy PF12173.3 g38543.t1 - 0.07 13.1 0 0.082 12.9 0 1.1 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:21050-21656 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~21050-21656 DUF4387 PF14330.1 g61717.t1 - 0.14 12.4 0 0.18 12.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) | Ref_seq=scaffold1340_contigs=7, transcript_loc=scaffold1340_contigs=7:134255-134536 Augustus predicted protein sequence Tobacco scaffold1340_contigs=7~134255-134536 DUF3412 PF11892.3 g97158.t1 - 0.034 13.9 0 0.039 13.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3412) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:156281-156553 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~156281-156553 Luteo_Vpg PF01659.11 g39719.t1 - 0.078 12.6 1.1 0.082 12.5 0.8 1.1 1 0 0 1 1 1 0 Luteovirus putative VPg genome linked protein | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:95448-95675 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~95448-95675 FLO_LFY PF01698.11 g46487.t1 - 0.017 14 13 0.018 13.9 9 1.1 1 0 0 1 1 1 0 Floricaula / Leafy protein | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:533072-533713 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~533072-533713 MHCassoc_trimer PF08831.5 g2310.t1 - 0.13 12.1 0.8 0.55 10.1 0.5 2 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold208_contigs=2, transcript_loc=scaffold208_contigs=2:18318-20160 Augustus predicted protein sequence Tobacco scaffold208_contigs=2~18318-20160 AlgF PF11182.3 g116107.t1 - 0.041 13.5 0.2 0.052 13.2 0.1 1.1 1 0 0 1 1 1 0 Alginate O-acetyl transferase AlgF | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:658480-658791 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~658480-658791 V_ATPase_I PF01496.14 g97349.t1 - 0.015 13.1 4.2 0.019 12.8 2.9 1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:100979-102937 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~100979-102937 Hpt PF01627.18 g6124.t1 - 0.099 12.6 0.5 0.35 10.8 0.4 1.9 1 1 0 1 1 1 0 Hpt domain | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:77510-77887 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~77510-77887 Oest_recep PF02159.10 g1898.t1 - 8.1 6.5 8.7 9.8 6.3 6 1.1 1 0 0 1 1 1 0 Oestrogen receptor | Ref_seq=scaffold196_contigs=2, transcript_loc=scaffold196_contigs=2:27669-27977 Augustus predicted protein sequence Tobacco scaffold196_contigs=2~27669-27977 ATHILA PF03078.10 g30119.t1 - 0.000019 23.4 0 0.0011 17.6 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:496156-496542 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~496156-496542 Rod_cone_degen PF15201.1 g15437.t1 - 0.49 10.2 2.2 0.7 9.7 0.7 2 1 1 1 2 2 2 0 Progressive rod-cone degeneration | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:332978-333478 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~332978-333478 RskA PF10099.4 g146.t1 - 0.042 13.5 0.9 5.8 6.6 0 2 1 1 1 2 2 2 0 Anti-sigma-K factor rskA | Ref_seq=scaffold6_contigs=8, transcript_loc=scaffold6_contigs=8:193569-193896 Augustus predicted protein sequence Tobacco scaffold6_contigs=8~193569-193896 DUF3934 PF13070.1 g118531.t1 - 0.56 10.4 2.5 1 9.6 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3934) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:127872-128817 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~127872-128817 Kp4 PF09044.5 g1837.t1 - 0.098 12.4 2 0.12 12.1 1.4 1.1 1 0 0 1 1 1 0 Kp4 | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:18449-20274 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~18449-20274 Chromo PF00385.19 g968.t1 - 0.006 16.2 0.7 0.006 16.2 0.5 1.7 2 0 0 2 2 2 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold88_contigs=5, transcript_loc=scaffold88_contigs=5:1-311 Augustus predicted protein sequence Tobacco scaffold88_contigs=5~1-311 DUF3893 PF13032.1 g24853.t1 - 0.0082 16.2 0.2 0.0086 16.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3893) | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:2536-2772 Augustus predicted protein sequence Tobacco scaffold679_contigs=3~2536-2772 Amidohydro_2 PF04909.9 g54646.t1 - 0.11 12 0 0.11 12 0 1 1 0 0 1 1 1 0 Amidohydrolase | Ref_seq=scaffold1211_contigs=3, transcript_loc=scaffold1211_contigs=3:20857-21126 Augustus predicted protein sequence Tobacco scaffold1211_contigs=3~20857-21126 E2R135 PF11570.3 g24774.t1 - 0.023 14.8 0.5 0.039 14 0.4 1.3 1 0 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:55631-56787 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~55631-56787 7tm_1 PF00001.16 g14218.t1 - 0.036 13.1 2.7 0.046 12.8 1.9 1.1 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) | Ref_seq=scaffold463_contigs=2, transcript_loc=scaffold463_contigs=2:52547-53035 Augustus predicted protein sequence Tobacco scaffold463_contigs=2~52547-53035 Rep_N PF08724.5 g28388.t1 - 0.079 12.4 0.1 0.19 11.2 0.1 1.8 1 1 0 1 1 1 0 Rep protein catalytic domain like | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:264539-265135 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~264539-265135 Arc PF03869.9 g130305.t1 - 0.45 10.1 2.1 5.2 6.7 0.1 2.2 2 0 0 2 2 2 0 Arc-like DNA binding domain | Ref_seq=scaffold3978_contigs=1, transcript_loc=scaffold3978_contigs=1:750-1331 Augustus predicted protein sequence Tobacco scaffold3978_contigs=1~750-1331 Presenilin PF01080.12 g4554.t1 - 0.062 12.1 3 0.075 11.8 2.1 1 1 0 0 1 1 1 0 Presenilin | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:106105-106569 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~106105-106569 DUF4612 PF15389.1 g33611.t1 - 0.7 10.5 11.2 0.96 10 7.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4612) | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:208891-209175 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~208891-209175 zf-CCHC_3 PF13917.1 g117717.t1 - 0.00033 20.3 1.5 0.073 12.8 1.1 2.8 1 1 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2693_contigs=8, transcript_loc=scaffold2693_contigs=8:84733-85848 Augustus predicted protein sequence Tobacco scaffold2693_contigs=8~84733-85848 IF3_C PF00707.17 g47336.t1 - 0.069 12.8 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain | Ref_seq=scaffold1094_contigs=5, transcript_loc=scaffold1094_contigs=5:103621-103938 Augustus predicted protein sequence Tobacco scaffold1094_contigs=5~103621-103938 Transcript_VP30 PF11507.3 g95283.t1 - 0.37 10.6 1.8 13 5.6 0.1 2.3 1 1 1 2 2 2 0 Ebola virus-specific transcription factor VP30 | Ref_seq=scaffold2056_contigs=12, transcript_loc=scaffold2056_contigs=12:1623-2207 Augustus predicted protein sequence Tobacco scaffold2056_contigs=12~1623-2207 Activator-TraM PF11657.3 g85006.t1 - 0.44 10 3.1 0.47 9.9 2.2 1.3 1 1 0 1 1 1 0 Transcriptional activator TraM | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:14824-15185 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~14824-15185 CMV_1a PF12467.3 g124168.t1 - 0.31 11.4 3.7 0.36 11.1 2.6 1.2 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1470002-1470238 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1470002-1470238 DUF4219 PF13961.1 g10522.t1 - 0.0017 17.6 0.5 0.004 16.5 0.3 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:182588-182881 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~182588-182881 DUF4624 PF15417.1 g82060.t1 - 3.8 7.1 5.2 4.4 6.9 0 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4624) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:584019-584716 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~584019-584716 Pam16 PF03656.8 g76728.t1 - 0.023 14.4 2.1 0.035 13.9 0.2 1.9 1 1 1 2 2 2 0 Pam16 | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:101876-102298 Augustus predicted protein sequence Tobacco scaffold1619_contigs=7~101876-102298 CDRT4 PF15213.1 g119809.t1 - 0.063 13.3 0.8 0.099 12.7 0.2 1.6 2 0 0 2 2 2 0 CMT1A duplicated region transcript 4 protein | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:240007-241000 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~240007-241000 FAM92 PF06730.6 g38234.t1 - 0.0042 16.4 2.1 0.0049 16.2 1.5 1 1 0 0 1 1 1 1 FAM92 protein | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:15081-15347 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~15081-15347 DUF765 PF05570.6 g41404.t1 - 0.024 14.5 0.2 0.069 13.1 0.1 1.7 1 0 0 1 1 1 0 Circovirus protein of unknown function (DUF765) | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:217924-218292 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~217924-218292 DUF2637 PF10935.3 g74474.t1 - 0.12 12.3 0 0.18 11.7 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2637) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:355193-356266 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~355193-356266 Nup153 PF08604.5 g104743.t1 - 0.033 12.8 0.4 0.038 12.6 0.3 1 1 0 0 1 1 1 0 Nucleoporin Nup153-like | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:171442-171684 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~171442-171684 RseC_MucC PF04246.7 g5997.t1 - 0.032 13.8 0 0.041 13.4 0 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC | Ref_seq=scaffold288_contigs=2, transcript_loc=scaffold288_contigs=2:73526-73774 Augustus predicted protein sequence Tobacco scaffold288_contigs=2~73526-73774 RNA_pol_Rpb6 PF01192.17 g93823.t1 - 0.075 12.7 0 0.24 11.1 0 1.8 1 0 0 1 1 1 0 RNA polymerase Rpb6 | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:129790-132779 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~129790-132779 Rod_cone_degen PF15201.1 g13898.t1 - 0.71 9.7 3.4 0.35 10.7 0.2 2.1 2 1 0 2 2 2 0 Progressive rod-cone degeneration | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:363663-364067 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~363663-364067 DNA_pol_alpha_N PF12254.3 g72067.t1 - 0.037 13.8 1.8 0.051 13.3 1.2 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:211730-212307 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~211730-212307 ERM PF00769.14 g54899.t1 - 0.0094 15.5 0.1 0.013 15 0 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:92653-93668 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~92653-93668 Di19_C PF14571.1 g97176.t1 - 0.095 13 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 Stress-induced protein Di19, C-terminal | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:201212-203584 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~201212-203584 CcdA PF07362.7 g97153.t1 - 0.14 12 0.2 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:151966-152208 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~151966-152208 UPF0542 PF15086.1 g30333.t1 - 0.038 13.7 0 0.05 13.3 0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:333711-334007 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~333711-334007 AAA_13 PF13166.1 g71553.t1 - 0.0026 16.3 5.1 0.0032 16 3.5 1.2 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:12914-13530 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~12914-13530 Omega-toxin PF06357.6 g129830.t1 - 0.12 11.9 0.4 0.25 10.9 0.3 1.5 1 0 0 1 1 1 0 Omega-atracotoxin | Ref_seq=scaffold3093_contigs=1, transcript_loc=scaffold3093_contigs=1:5006-5299 Augustus predicted protein sequence Tobacco scaffold3093_contigs=1~5006-5299 CCDC50_N PF15295.1 g27962.t1 - 0.067 13.1 0.6 0.078 12.8 0.4 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:670236-670544 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~670236-670544 Clusterin PF01093.12 g62941.t1 - 0.096 11.4 0.5 0.1 11.3 0.3 1 1 0 0 1 1 1 0 Clusterin | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:70276-70500 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~70276-70500 zf-BED PF02892.10 g41067.t1 - 0.093 12.4 3.1 0.12 12.1 1.4 1.8 2 0 0 2 2 2 0 BED zinc finger | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:585236-585553 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~585236-585553 DUF3903 PF13043.1 g38407.t1 - 0.029 13.8 0.6 0.051 13 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3903) | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:189567-190662 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~189567-190662 DUF2130 PF09903.4 g101032.t1 - 0.084 11.6 0.8 0.096 11.4 0.5 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) | Ref_seq=scaffold2207_contigs=13, transcript_loc=scaffold2207_contigs=13:112111-112389 Augustus predicted protein sequence Tobacco scaffold2207_contigs=13~112111-112389 zf-CCHC PF00098.18 g43137.t1 - 0.000039 23.3 0.1 0.000058 22.8 0.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:584372-584695 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~584372-584695 IucA_IucC PF04183.7 g82777.t1 - 0.027 13.7 0 0.031 13.5 0 1.1 1 0 0 1 1 1 0 IucA / IucC family | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:58313-58615 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~58313-58615 Toprim_Crpt PF13342.1 g29341.t1 - 0.048 13.2 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 C-terminal repeat of topoisomerase | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:263250-263513 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~263250-263513 V_ATPase_I PF01496.14 g22968.t1 - 0.14 10 2.4 0.2 9.4 1.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:52520-53945 Augustus predicted protein sequence Tobacco scaffold631_contigs=3~52520-53945 DUF3984 PF13136.1 g83402.t1 - 0.024 13.8 2.9 0.028 13.6 2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3984) | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:50288-52458 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~50288-52458 DUF3987 PF13148.1 g97732.t1 - 0.034 12.7 0.5 0.039 12.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:42684-43162 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~42684-43162 YABBY PF04690.8 g47302.t1 - 0.14 12.3 0 0.18 12 0 1.2 1 0 0 1 1 1 0 YABBY protein | Ref_seq=scaffold1094_contigs=5, transcript_loc=scaffold1094_contigs=5:12968-13657 Augustus predicted protein sequence Tobacco scaffold1094_contigs=5~12968-13657 ATHILA PF03078.10 g50685.t1 - 0.00042 19 0.1 0.2 10.1 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1143_contigs=1, transcript_loc=scaffold1143_contigs=1:21610-22223 Augustus predicted protein sequence Tobacco scaffold1143_contigs=1~21610-22223 DUF4257 PF14074.1 g109694.t1 - 0.075 12.6 0 0.12 12 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4257) | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:321447-321785 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~321447-321785 PSD2 PF07624.6 g115697.t1 - 0.094 12.3 0.1 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1585) | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:67211-67459 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~67211-67459 EGF_3 PF12947.2 g33086.t1 - 0.09 12.7 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 EGF domain | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:348522-356081 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~348522-356081 Ycf54 PF10674.4 g5880.t1 - 0.00027 21 2.6 9.3 6.4 0.3 4.9 1 1 4 5 5 5 1 Protein of unknown function (DUF2488) | Ref_seq=scaffold284_contigs=1, transcript_loc=scaffold284_contigs=1:39726-40452 Augustus predicted protein sequence Tobacco scaffold284_contigs=1~39726-40452 ATHILA PF03078.10 g32491.t1 - 0.008 14.8 0 0.5 8.8 0 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:256294-257186 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~256294-257186 PRO8NT PF08082.6 g44274.t1 - 0.023 14.3 0 0.025 14.2 0 1 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:143699-144083 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~143699-144083 Fimbrial_CS1 PF04449.7 g62175.t1 - 0.0015 18.6 0.9 0.0023 17.9 0.3 1.5 2 0 0 2 2 2 1 CS1 type fimbrial major subunit | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:115294-115749 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~115294-115749 Mannitol_dh PF01232.18 g123741.t1 - 0.024 14.6 0.9 0.084 12.8 0.3 2 1 1 1 2 2 2 0 Mannitol dehydrogenase Rossmann domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:428742-429686 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~428742-429686 Pertussis_S2S3 PF02918.10 g97145.t1 - 0.12 12 0 0.18 11.5 0 1.1 1 0 0 1 1 1 0 Pertussis toxin, subunit 2 and 3, C-terminal domain | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:116574-117184 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~116574-117184 UBN2 PF14223.1 g72293.t1 - 0.0013 18.4 0 0.0018 18 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:731574-732005 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~731574-732005 DUF1602 PF07673.9 g1947.t1 - 1.1 8.8 4.5 11 5.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1602) | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:51739-52304 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~51739-52304 NYD-SP28_assoc PF14775.1 g46271.t1 - 0.29 10.8 2 0.42 10.3 1.4 1.3 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:161564-161908 Augustus predicted protein sequence Tobacco scaffold1064_contigs=7~161564-161908 DUF1985 PF09331.6 g51591.t1 - 0.00011 22 0 0.00012 21.9 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:238398-238823 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~238398-238823 DUF1911 PF08929.5 g89248.t1 - 0.052 14.2 0.1 0.076 13.7 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1911) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:147251-147750 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~147251-147750 Hist_rich_Ca-bd PF10529.4 g35092.t1 - 5.2 7.2 5.9 0.37 10.8 0.8 1.6 2 0 0 2 2 2 0 Histidine-rich Calcium-binding repeat region | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:25028-25396 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~25028-25396 DBD_Tnp_Mut PF03108.10 g113823.t1 - 6.5E-011 41.6 0.1 8.2E-011 41.3 0.1 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:540076-540378 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~540076-540378 Delta_lysin PF05372.6 g73183.t1 - 0.041 13.2 0 0.078 12.3 0 1.4 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:6434-7842 Augustus predicted protein sequence Tobacco scaffold1532_contigs=5~6434-7842 DUF2570 PF10828.3 g64115.t1 - 0.05 13.2 0.5 0.092 12.3 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:369674-370117 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~369674-370117 SspK PF08176.7 g113953.t1 - 0.084 12.8 0.6 19 5.3 0 3.5 4 0 0 4 4 4 0 Small acid-soluble spore protein K family | Ref_seq=scaffold2639_contigs=24, transcript_loc=scaffold2639_contigs=24:6522-6887 Augustus predicted protein sequence Tobacco scaffold2639_contigs=24~6522-6887 ComC PF03047.9 g107893.t1 - 0.36 10.2 1.6 0.4 10.1 0.3 1.7 1 1 0 1 1 1 0 COMC family | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:494118-494402 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~494118-494402 DUF4229 PF14012.1 g43235.t1 - 0.091 12.6 1.4 0.55 10.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:209366-210679 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~209366-210679 PepSY_TM PF03929.11 g88449.t1 - 0.14 12.6 2.1 0.27 11.6 1.2 1.7 1 1 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold1927_contigs=30, transcript_loc=scaffold1927_contigs=30:142866-144401 Augustus predicted protein sequence Tobacco scaffold1927_contigs=30~142866-144401 DUF4489 PF14879.1 g124468.t1 - 0.007 16 0.3 0.0089 15.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4489) | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:99300-99692 Augustus predicted protein sequence Tobacco scaffold2762_contigs=5~99300-99692 DUF4295 PF14128.1 g116631.t1 - 0.22 11.1 1.6 5.6 6.6 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) | Ref_seq=scaffold2672_contigs=4, transcript_loc=scaffold2672_contigs=4:133318-133533 Augustus predicted protein sequence Tobacco scaffold2672_contigs=4~133318-133533 DUF2470 PF10615.4 g39655.t1 - 0.064 13.4 0.1 18 5.6 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2470) | Ref_seq=scaffold960_contigs=13, transcript_loc=scaffold960_contigs=13:5035-5779 Augustus predicted protein sequence Tobacco scaffold960_contigs=13~5035-5779 UBN2_2 PF14227.1 g63871.t1 - 0.0086 15.6 0 0.012 15.1 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:120443-122878 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~120443-122878 Zeta_toxin PF06414.7 g86805.t1 - 0.013 14.5 1.1 2.2 7.3 0.1 2.4 1 1 1 2 2 2 0 Zeta toxin | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:85921-89430 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~85921-89430 zinc_ribbon_2 PF13240.1 g47371.t1 - 0.22 11 5.3 2.4 7.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:4008-4250 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~4008-4250 Reprolysin_2 PF13574.1 g111037.t1 - 0.11 12.4 0 0.12 12.3 0 1.1 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:120030-121240 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~120030-121240 RVT_3 PF13456.1 g16494.t1 - 0.000038 23.3 0 0.00005 23 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold517_contigs=2, transcript_loc=scaffold517_contigs=2:66191-66409 Augustus predicted protein sequence Tobacco scaffold517_contigs=2~66191-66409 HXXSHH PF07586.6 g25797.t1 - 0.1 11.5 0 0.12 11.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:78288-79011 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~78288-79011 Nnf1 PF03980.9 g9912.t1 - 0.049 13.6 0.4 0.072 13 0.3 1.3 1 0 0 1 1 1 0 Nnf1 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:319584-319823 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~319584-319823 TOM_sub5 PF15178.1 g61434.t1 - 0.058 13 0.4 0.16 11.7 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial import receptor subunit TOM5 homolog | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:104770-105074 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~104770-105074 FXR1P_C PF12235.3 g42985.t1 - 1.3 9.1 5.2 1.7 8.7 3.6 1.1 1 0 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:107771-107980 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~107771-107980 ATHILA PF03078.10 g86096.t1 - 0.065 11.8 0 0.072 11.6 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:169181-170857 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~169181-170857 NPCBM_assoc PF10633.4 g28271.t1 - 0.16 12 0.1 0.23 11.5 0 1.2 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:101265-101594 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~101265-101594 Retrotrans_gag PF03732.12 g125126.t1 - 0.13 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:140383-141131 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~140383-141131 Lipase_bact_N PF12262.3 g94203.t1 - 0.066 12.4 0 0.066 12.4 0 1 1 0 0 1 1 1 0 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:174727-175014 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~174727-175014 FTZ PF03867.9 g63403.t1 - 0.012 14.8 0.2 0.014 14.6 0.1 1.1 1 0 0 1 1 1 0 Fushi tarazu (FTZ), N-terminal region | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:187862-188362 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~187862-188362 Mnd1 PF03962.10 g39600.t1 - 0.15 11.6 5.5 0.1 12.2 2.8 1.3 1 1 0 1 1 1 0 Mnd1 family | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:144561-145382 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~144561-145382 Prolamin_like PF05617.6 g98603.t1 - 0.0027 17.8 4.7 0.0035 17.4 3.3 1.3 1 0 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:308711-308956 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~308711-308956 DUF4186 PF13811.1 g103566.t1 - 0.089 12.5 0.1 0.24 11.1 0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4186) | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:59548-60232 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~59548-60232 DUF4479 PF14794.1 g1822.t1 - 0.062 12.8 0.7 4.9 6.7 0.1 3 3 0 0 3 3 3 0 Domain of unknown function (DUF4479) | Ref_seq=scaffold194_contigs=2, transcript_loc=scaffold194_contigs=2:84664-85011 Augustus predicted protein sequence Tobacco scaffold194_contigs=2~84664-85011 DUF1938 PF09153.5 g114959.t1 - 0.08 12.7 0 0.25 11.1 0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1938) | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:44899-45666 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~44899-45666 ATHILA PF03078.10 g42737.t1 - 0.0000016 27 0 0.0000017 26.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:473957-474316 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~473957-474316 YdjO PF14169.1 g17777.t1 - 0.011 15.1 0.1 0.025 14 0.1 1.5 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:177801-178703 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~177801-178703 Nop14 PF04147.7 g96458.t1 - 0.0092 13.9 46.1 0.01 13.7 31.9 1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:40498-41338 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~40498-41338 DUF3792 PF12670.2 g114500.t1 - 0.07 12.9 13.1 0.14 12 9.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:187191-187676 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~187191-187676 RVT_3 PF13456.1 g121778.t1 - 1.3E-010 40.9 0 1.6E-010 40.6 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:306100-306399 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~306100-306399 KN_motif PF12075.3 g19922.t1 - 3.4 7.5 5.9 19 5.1 0.3 2.9 3 0 0 3 3 3 0 KN motif | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:52467-52876 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~52467-52876 FeThRed_A PF02941.10 g120751.t1 - 0.11 12.4 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 Ferredoxin thioredoxin reductase variable alpha chain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:39815-40111 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~39815-40111 DUF2408 PF10303.4 g53176.t1 - 0.0021 18.1 2.8 0.0046 17 1.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2408) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:105415-105771 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~105415-105771 ATHILA PF03078.10 g13175.t1 - 0.061 11.9 0 0.065 11.8 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:326983-328261 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~326983-328261 Albumin_I PF08027.6 g1231.t1 - 0.0028 17.3 1.3 0.0033 17.1 0.9 1.1 1 0 0 1 1 1 1 Albumin I | Ref_seq=scaffold129_contigs=2, transcript_loc=scaffold129_contigs=2:11006-11254 Augustus predicted protein sequence Tobacco scaffold129_contigs=2~11006-11254 TAF1D PF15333.1 g36082.t1 - 0.0028 17.4 4.3 0.0031 17.3 3 1 1 0 0 1 1 1 1 TATA box-binding protein-associated factor 1D | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:247810-248082 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~247810-248082 Lactamase_B_3 PF13483.1 g39550.t1 - 0.14 11.9 0.8 0.41 10.3 0.5 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:42497-43141 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~42497-43141 Radial_spoke_3 PF06098.6 g16550.t1 - 0.0083 15.1 3.5 0.01 14.8 2.4 1.1 1 0 0 1 1 1 1 Radial spoke protein 3 | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:64520-65079 Augustus predicted protein sequence Tobacco scaffold519_contigs=1~64520-65079 COX_ARM PF06481.9 g42494.t1 - 0.042 13.5 0 0.077 12.6 0 1.4 1 0 0 1 1 1 0 COX Aromatic Rich Motif | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:13559-14391 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~13559-14391 Gln-synt_N PF03951.14 g81096.t1 - 0.13 11.8 0.1 9.4 5.8 0 2.6 2 0 0 2 2 2 0 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:228012-230529 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~228012-230529 DUF4339 PF14237.1 g67719.t1 - 0.099 12.2 0 0.14 11.7 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4339) | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:105194-105430 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~105194-105430 zf-CCHC_4 PF14392.1 g28921.t1 - 0.00000046 29.4 0.1 0.00000064 28.9 0.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:5480-5878 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~5480-5878 Nucleos_tra2_N PF01773.15 g22992.t1 - 0.12 12.6 0 0.21 11.9 0 1.4 1 0 0 1 1 1 0 Na+ dependent nucleoside transporter N-terminus | Ref_seq=scaffold631_contigs=3, transcript_loc=scaffold631_contigs=3:137860-138162 Augustus predicted protein sequence Tobacco scaffold631_contigs=3~137860-138162 DIRP PF06584.8 g65267.t1 - 0.02 14.7 0.5 4.7 7.1 0.1 2.4 2 0 0 2 2 2 0 DIRP | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:138203-141205 Augustus predicted protein sequence Tobacco scaffold1403_contigs=11~138203-141205 DUF4201 PF13870.1 g100457.t1 - 0.02 14.3 1.6 0.036 13.4 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:114150-116724 Augustus predicted protein sequence Tobacco scaffold2189_contigs=3~114150-116724 ATHILA PF03078.10 g122207.t1 - 0.00002 23.4 0 0.000056 21.9 0 1.6 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:65723-66055 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~65723-66055 RVT_3 PF13456.1 g66034.t1 - 0.000000026 33.5 0 0.00000005 32.6 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:187735-189975 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~187735-189975 IFP_35_N PF07334.8 g2739.t1 - 0.21 11.5 4.1 0.11 12.4 1.3 1.7 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:215157-215477 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~215157-215477 MRP-S32 PF10210.4 g24485.t1 - 0.051 13.9 0.7 0.072 13.4 0.5 1.2 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:58314-58973 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~58314-58973 YwiC PF14256.1 g88038.t1 - 0.0017 18.3 7.2 0.0024 17.9 5 1.2 1 0 0 1 1 1 1 YwiC-like protein | Ref_seq=scaffold1912_contigs=2, transcript_loc=scaffold1912_contigs=2:43384-45746 Augustus predicted protein sequence Tobacco scaffold1912_contigs=2~43384-45746 Imp-YgjV PF10688.4 g122605.t1 - 0.025 13.9 1.5 0.027 13.9 1.1 1.1 1 0 0 1 1 1 0 Bacterial inner membrane protein | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:374395-376576 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~374395-376576 DUF3886 PF13025.1 g6373.t1 - 0.039 13.9 0.3 0.049 13.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) | Ref_seq=scaffold295_contigs=10, transcript_loc=scaffold295_contigs=10:223579-223797 Augustus predicted protein sequence Tobacco scaffold295_contigs=10~223579-223797 Galanin PF01296.13 g129606.t1 - 0.047 13.5 3.1 9.8 6.1 0 3.4 3 0 0 3 3 3 0 Galanin | Ref_seq=scaffold2998_contigs=1, transcript_loc=scaffold2998_contigs=1:3850-5124 Augustus predicted protein sequence Tobacco scaffold2998_contigs=1~3850-5124 Ripply PF14998.1 g117779.t1 - 0.018 15.1 1.8 7.7 6.7 0 3 4 0 0 4 4 4 0 Transcription Regulator | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:77843-79132 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~77843-79132 Na_H_antiport_1 PF06965.7 g120954.t1 - 0.022 13.5 0 0.031 13 0 1.2 1 0 0 1 1 1 0 Na+/H+ antiporter 1 | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:86605-87786 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~86605-87786 Trypan_PARP PF05887.6 g51514.t1 - 0.48 10.2 12.4 0.63 9.8 8.6 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:3957-4589 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~3957-4589 FliL PF03748.9 g121082.t1 - 0.058 13.3 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:331400-331888 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~331400-331888 TPR_MLP1_2 PF07926.7 g48968.t1 - 0.000085 22.3 3.1 0.000085 22.3 2.1 2.1 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:39070-40211 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~39070-40211 ParB PF08775.5 g12012.t1 - 0.0029 17.8 0.6 0.0034 17.6 0.4 1.1 1 0 0 1 1 1 1 ParB family | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:201405-201647 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~201405-201647 DBD_Tnp_Mut PF03108.10 g96690.t1 - 5.2E-009 35.5 0.2 8.7E-009 34.8 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:149411-150479 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~149411-150479 RVT_3 PF13456.1 g40050.t1 - 0.0024 17.5 0 0.0031 17.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:329491-329730 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~329491-329730 DUF490 PF04357.8 g53749.t1 - 0.041 12.9 0 7.4 5.5 0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF490) | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:21914-22820 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~21914-22820 RVT_3 PF13456.1 g25843.t1 - 0.00000021 30.6 0 0.00000033 29.9 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold705_contigs=2, transcript_loc=scaffold705_contigs=2:18877-19711 Augustus predicted protein sequence Tobacco scaffold705_contigs=2~18877-19711 Laminin_EGF PF00053.19 g29922.t1 - 0.075 12.9 1.4 0.11 12.4 1 1.2 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:35284-35897 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~35284-35897 HI0933_like PF03486.9 g1002.t1 - 0.086 11.2 0 0.093 11.1 0 1.1 1 0 0 1 1 1 0 HI0933-like protein | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:36612-40986 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~36612-40986 Tropomyosin PF00261.15 g41800.t1 - 0.011 14.8 4.8 0.021 13.9 3.3 1.4 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:21075-22266 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~21075-22266 Sugarporin_N PF11471.3 g43582.t1 - 0.025 14.2 0.3 0.044 13.4 0.2 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:69160-69393 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~69160-69393 DUF4657 PF15552.1 g86238.t1 - 0.027 13.7 0.9 0.035 13.3 0.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4657) | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:299356-299769 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~299356-299769 zf-Dof PF02701.10 g52676.t1 - 0.0018 18.1 0.1 0.0024 17.7 0 1.3 1 0 0 1 1 1 1 Dof domain, zinc finger | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:602831-603947 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~602831-603947 RE_EcoO109I PF14511.1 g101540.t1 - 0.054 12.8 1 5.8 6.2 0.1 2.2 1 1 1 2 2 2 0 Type II restriction endonuclease EcoO109I | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:266560-267660 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~266560-267660 Trypan_PARP PF05887.6 g73615.t1 - 0.98 9.2 5.6 1 9.1 3.9 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1541_contigs=9, transcript_loc=scaffold1541_contigs=9:413578-413744 Augustus predicted protein sequence Tobacco scaffold1541_contigs=9~413578-413744 DUF4448 PF14610.1 g88004.t1 - 0.079 12.4 0 0.098 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4448) | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:187798-188025 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~187798-188025 HSA PF07529.8 g106481.t1 - 0.22 11.3 4.5 0.36 10.6 3.1 1.4 1 1 0 1 1 1 0 HSA | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:53116-53463 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~53116-53463 TFIIA PF03153.8 g46352.t1 - 0.0018 18.2 9.5 0.0018 18.2 6.6 1 1 0 0 1 1 1 1 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:158115-158465 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~158115-158465 DUF4171 PF13775.1 g95214.t1 - 2.1 8.5 4.6 5.3 7.2 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4171) | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:349993-350508 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~349993-350508 DUF2183 PF09949.4 g99209.t1 - 0.13 12.2 0 0.21 11.5 0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2183) | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:27979-28605 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~27979-28605 Gal_mutarotas_2 PF13802.1 g36657.t1 - 0.024 14.4 0.3 0.21 11.4 0 2.2 2 0 0 2 2 2 0 Galactose mutarotase-like | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:192511-194586 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~192511-194586 Fer4_17 PF13534.1 g8444.t1 - 0.028 14.7 0.2 0.044 14.1 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:95095-95325 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~95095-95325 ATHILA PF03078.10 g28666.t1 - 0.031 12.8 0 0.034 12.7 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:27841-28119 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~27841-28119 Hydrophobin_2 PF06766.6 g77410.t1 - 0.55 9.9 5.4 1 9 3.7 1.5 1 1 0 1 1 1 0 Fungal hydrophobin | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:16647-16874 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~16647-16874 Antimicrobial15 PF08110.7 g83252.t1 - 0.034 14.1 4.5 0.1 12.6 0.1 2.7 2 0 0 2 2 2 0 Ocellatin family | Ref_seq=scaffold1781_contigs=3, transcript_loc=scaffold1781_contigs=3:64066-64527 Augustus predicted protein sequence Tobacco scaffold1781_contigs=3~64066-64527 MFS_2 PF13347.1 g43728.t1 - 0.028 12.8 0 0.038 12.4 0 1.1 1 0 0 1 1 1 0 MFS/sugar transport protein | Ref_seq=scaffold1026_contigs=2, transcript_loc=scaffold1026_contigs=2:2826-4083 Augustus predicted protein sequence Tobacco scaffold1026_contigs=2~2826-4083 MRI PF15325.1 g116028.t1 - 0.27 12.2 7.2 0.065 14.2 1.7 2.2 1 1 2 3 3 3 0 Modulator of retrovirus infection | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:466129-467066 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~466129-467066 Chromo PF00385.19 g96257.t1 - 0.026 14.1 0 0.043 13.5 0 1.4 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:238937-239164 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~238937-239164 Pentapeptide_3 PF13576.1 g44497.t1 - 0.017 14.9 0.1 0.031 14.1 0.1 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:249098-249325 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~249098-249325 RhoGEF PF00621.15 g74891.t1 - 0.013 15.3 0.6 0.023 14.5 0.4 1.5 1 1 0 1 1 1 0 RhoGEF domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:297602-297886 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~297602-297886 An_peroxidase PF03098.10 g128220.t1 - 0.14 10.5 0 0.17 10.2 0 1.1 1 0 0 1 1 1 0 Animal haem peroxidase | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:6381-7721 Augustus predicted protein sequence Tobacco scaffold2856_contigs=1~6381-7721 UPF0547 PF10571.4 g35176.t1 - 0.052 13.2 0 0.067 12.8 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:152507-153109 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~152507-153109 DUF3359 PF11839.3 g115157.t1 - 0.017 15.4 0.2 0.017 15.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:110594-111019 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~110594-111019 Crust_neurohorm PF01147.12 g73268.t1 - 0.48 9.7 2.9 9.5 5.6 0.6 2.6 2 1 1 3 3 3 0 Crustacean CHH/MIH/GIH neurohormone family | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:106753-107070 Augustus predicted protein sequence Tobacco scaffold1535_contigs=9~106753-107070 YicC_N PF03755.8 g26732.t1 - 0.051 13.4 3.1 0.18 11.7 1.2 2.4 2 1 1 3 3 3 0 YicC-like family, N-terminal region | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:223655-224862 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~223655-224862 DEC-1_N PF04625.8 g3224.t1 - 2.9 6.4 10.1 3.7 6.1 7 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:46782-47675 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~46782-47675 DBD_Tnp_Mut PF03108.10 g104685.t1 - 0.002 17.6 0 0.0039 16.7 0 1.5 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:384461-384931 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~384461-384931 MCD PF05292.6 g94643.t1 - 0.14 10.8 0 0.22 10.1 0 1.3 1 1 0 1 1 1 0 Malonyl-CoA decarboxylase (MCD) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:221512-221811 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~221512-221811 DUF1985 PF09331.6 g78715.t1 - 0.000000082 32.1 0 0.00000012 31.6 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:25253-27553 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~25253-27553 Ribosomal_L15e PF00827.12 g73265.t1 - 0.0055 16.2 2.4 0.0074 15.8 1.7 1.2 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold1535_contigs=9, transcript_loc=scaffold1535_contigs=9:97777-98295 Augustus predicted protein sequence Tobacco scaffold1535_contigs=9~97777-98295 zf-CCHC_4 PF14392.1 g64029.t1 - 0.000075 22.3 0.8 0.00011 21.7 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:200790-201656 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~200790-201656 RALF PF05498.6 g115631.t1 - 0.000016 25.6 2.3 0.09 13.6 0 2.2 2 0 0 2 2 2 2 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:839268-839564 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~839268-839564 K167R PF08065.7 g85724.t1 - 2 8.5 5.2 0.31 11.1 0.5 2 2 1 1 3 3 3 0 K167R (NUC007) repeat | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:430535-431116 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~430535-431116 UBN2 PF14223.1 g26356.t1 - 0.0055 16.4 0 0.0074 16 0 1.2 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:167267-167485 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~167267-167485 Pribosyl_synth PF14572.1 g48949.t1 - 0.083 12.6 0 0.099 12.3 0 1.1 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:1-311 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~1-311 DUF4164 PF13747.1 g84952.t1 - 0.011 15.8 2.4 0.1 12.7 0.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:247189-247614 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~247189-247614 Glyco_trans_1_2 PF13524.1 g112986.t1 - 0.18 12 1.7 6.7 7 0.2 2.2 2 0 0 2 2 2 0 Glycosyl transferases group 1 | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:93569-94114 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~93569-94114 NumbF PF06311.7 g60312.t1 - 0.011 15.7 0.6 0.021 14.9 0.2 1.7 2 0 0 2 2 2 0 NUMB domain | Ref_seq=scaffold1305_contigs=4, transcript_loc=scaffold1305_contigs=4:89014-90855 Augustus predicted protein sequence Tobacco scaffold1305_contigs=4~89014-90855 HNH_4 PF13395.1 g93925.t1 - 0.051 13.2 0.1 0.067 12.8 0 1.2 1 0 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:173657-173872 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~173657-173872 Sugarporin_N PF11471.3 g44330.t1 - 0.076 12.6 0.5 0.13 11.9 0.3 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:266289-266810 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~266289-266810 hNIFK_binding PF12196.3 g89708.t1 - 6 6.3 5.5 5.9 6.3 0.7 2.7 2 1 1 3 3 3 0 FHA Ki67 binding domain of hNIFK | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:204171-204398 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~204171-204398 T2SI PF02501.12 g67816.t1 - 0.039 13.9 0.2 0.053 13.4 0.1 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein I | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:380831-383116 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~380831-383116 Methyltransf_12 PF08242.7 g7704.t1 - 0.023 15.1 2.9 15 6.1 0.1 4 1 1 1 2 2 2 0 Methyltransferase domain | Ref_seq=scaffold319_contigs=6, transcript_loc=scaffold319_contigs=6:26048-26416 Augustus predicted protein sequence Tobacco scaffold319_contigs=6~26048-26416 Virulence_fact PF13769.1 g50972.t1 - 0.1 12.4 2.5 0.14 11.9 1.7 1.2 1 0 0 1 1 1 0 Virulence factor | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:125901-126324 Augustus predicted protein sequence Tobacco scaffold1148_contigs=4~125901-126324 RraB PF06877.6 g7939.t1 - 0.0049 17.4 1.3 0.0059 17.2 0.9 1.1 1 0 0 1 1 1 1 Regulator of ribonuclease activity B | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:173906-174302 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~173906-174302 Xin PF08043.7 g85885.t1 - 0.017 14.7 0 0.045 13.4 0 1.7 1 0 0 1 1 1 0 Xin repeat | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:63072-63533 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~63072-63533 Pox_A_type_inc PF04508.7 g13148.t1 - 0.0025 17.4 0.8 0.011 15.4 0 2.4 2 0 0 2 2 2 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:270924-271453 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~270924-271453 Adeno_E1A PF02703.9 g61409.t1 - 0.13 11.6 1.1 0.15 11.4 0.8 1.1 1 0 0 1 1 1 0 Early E1A protein | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:31758-32111 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~31758-32111 Hemopexin PF00045.14 g59489.t1 - 0.053 13.2 1.3 0.072 12.8 0.7 1.6 1 1 0 1 1 1 0 Hemopexin | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:168101-168446 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~168101-168446 FAM47 PF14642.1 g107873.t1 - 0.07 12.4 1.9 0.074 12.3 1.3 1.1 1 0 0 1 1 1 0 FAM47 family | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:399064-399441 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~399064-399441 FAM178 PF14816.1 g64097.t1 - 0.00084 18.1 3.6 0.00097 17.9 2.5 1.1 1 0 0 1 1 1 1 Family of unknown function, FAM178 | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:343888-344889 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~343888-344889 Prim-Pol PF09250.6 g46575.t1 - 0.061 13.3 0.1 0.088 12.7 0.1 1.2 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:185808-186380 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~185808-186380 PAF-AH_p_II PF03403.8 g125235.t1 - 0.07 11.4 0 0.094 10.9 0 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:115114-115576 Augustus predicted protein sequence Tobacco scaffold2769_contigs=1~115114-115576 zf-CCHC PF00098.18 g57921.t1 - 0.0000033 26.7 6.8 0.000005 26.1 4.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1262_contigs=1, transcript_loc=scaffold1262_contigs=1:10927-11154 Augustus predicted protein sequence Tobacco scaffold1262_contigs=1~10927-11154 HAP1_N PF04849.8 g113015.t1 - 0.14 11.1 1.5 0.14 11.1 0.2 1.5 2 0 0 2 2 2 0 HAP1 N-terminal conserved region | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:158386-160299 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~158386-160299 zf-U1 PF06220.7 g92474.t1 - 0.38 10.3 1.7 0.55 9.8 1.2 1.3 1 0 0 1 1 1 0 U1 zinc finger | Ref_seq=scaffold1988_contigs=1, transcript_loc=scaffold1988_contigs=1:3786-4118 Augustus predicted protein sequence Tobacco scaffold1988_contigs=1~3786-4118 DBD_Tnp_Mut PF03108.10 g5454.t1 - 0.00000058 28.9 0.1 0.0000011 28.1 0.1 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:101097-101900 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~101097-101900 HOOK PF05622.7 g63780.t1 - 0.021 12.6 7.1 0.024 12.4 4.9 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:74091-74780 Augustus predicted protein sequence Tobacco scaffold1381_contigs=7~74091-74780 Auts2 PF15336.1 g75532.t1 - 0.047 13.7 0 0.052 13.5 0 1.2 1 0 0 1 1 1 0 Autism susceptibility gene 2 protein | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:160205-160615 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~160205-160615 SOCS_box PF07525.11 g70743.t1 - 0.22 11.4 1.6 16 5.4 0.1 2.3 2 0 0 2 2 2 0 SOCS box | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:90506-90748 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~90506-90748 DUF128 PF01995.11 g52443.t1 - 0.097 11.5 0 0.13 11.1 0 1.2 1 1 0 1 1 1 0 Domain of unknown function DUF128 | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:276963-277495 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~276963-277495 TIL PF01826.12 g71232.t1 - 0.0038 17.3 6.1 0.0048 16.9 4.2 1.2 1 0 0 1 1 1 1 Trypsin Inhibitor like cysteine rich domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:301928-302158 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~301928-302158 GSH_synthase PF03199.10 g18162.t1 - 0.13 12.3 0 11 6.1 0 2 1 1 1 2 2 2 0 Eukaryotic glutathione synthase | Ref_seq=scaffold546_contigs=9, transcript_loc=scaffold546_contigs=9:116853-117077 Augustus predicted protein sequence Tobacco scaffold546_contigs=9~116853-117077 DUF591 PF04569.9 g110516.t1 - 0.25 11.4 2.5 0.46 10.5 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function | Ref_seq=scaffold2559_contigs=11, transcript_loc=scaffold2559_contigs=11:32517-33404 Augustus predicted protein sequence Tobacco scaffold2559_contigs=11~32517-33404 Tiny_TM_bacill PF09680.5 g98960.t1 - 8.6 5.8 16.9 1.6 8.2 1.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (Tiny_TM_bacill) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:107886-108224 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~107886-108224 ODV-E18 PF10717.4 g12420.t1 - 0.035 13.5 6 0.038 13.4 4.2 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:210997-211209 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~210997-211209 DUF605 PF04652.11 g25539.t1 - 0.071 12.5 14.4 0.085 12.2 10 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold699_contigs=2, transcript_loc=scaffold699_contigs=2:19436-20557 Augustus predicted protein sequence Tobacco scaffold699_contigs=2~19436-20557 Membr_traf_MHD PF10540.4 g40711.t1 - 0.098 12.4 0.4 0.11 12.3 0.3 1.2 1 0 0 1 1 1 0 Munc13 (mammalian uncoordinated) homology domain | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:375030-375365 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~375030-375365 DUF4219 PF13961.1 g27380.t1 - 0.00063 19.1 0.2 0.001 18.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:119210-119536 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~119210-119536 IncA PF04156.9 g3053.t1 - 0.013 15 0.8 0.014 15 0.6 1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:243407-243619 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~243407-243619 PCDO_beta_N PF12391.3 g50894.t1 - 9.1 5.8 10 0.18 11.2 1.1 2.4 3 0 0 3 3 3 0 Protocatechuate 3,4-dioxygenase beta subunit N terminal | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:10338-10538 Augustus predicted protein sequence Tobacco scaffold1147_contigs=3~10338-10538 PAP_assoc PF03828.14 g2539.t1 - 1.2 9.1 4.2 0.24 11.3 0.6 1.7 2 1 0 2 2 2 0 Cid1 family poly A polymerase | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:196010-196258 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~196010-196258 APC_crr PF05923.7 g46272.t1 - 0.2 11.3 1.6 0.47 10.1 1.1 1.6 1 0 0 1 1 1 0 APC cysteine-rich region | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:161953-162174 Augustus predicted protein sequence Tobacco scaffold1064_contigs=7~161953-162174 ATXN-1_C PF12547.3 g75039.t1 - 2.7 8 5.3 0.39 10.7 0.5 2.1 2 0 0 2 2 2 0 Capicua transcriptional repressor modulator | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:364355-366627 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~364355-366627 DUF479 PF04336.7 g115725.t1 - 0.01 15.9 0.2 0.013 15.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF479 | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:129412-129774 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~129412-129774 MOR2-PAG1_N PF14222.1 g106491.t1 - 0.036 12.7 0.2 0.04 12.6 0.2 1.1 1 0 0 1 1 1 0 Cell morphogenesis N-terminal | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:72258-72740 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~72258-72740 DUF2992 PF11208.3 g97754.t1 - 0.0087 15.9 0.2 0.011 15.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2992) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:82383-83117 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~82383-83117 DUF3987 PF13148.1 g10370.t1 - 0.01 14.4 0.8 0.011 14.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:206543-206839 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~206543-206839 DUF4200 PF13863.1 g66007.t1 - 0.046 13.6 0.9 0.065 13.1 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:133346-133754 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~133346-133754 SLT_L PF14718.1 g95588.t1 - 0.13 12 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Soluble lytic murein transglycosylase L domain | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:98291-98647 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~98291-98647 Rrn6 PF10214.4 g31254.t1 - 1.6 6.6 6.4 1.8 6.5 4.4 1 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor | Ref_seq=scaffold792_contigs=3, transcript_loc=scaffold792_contigs=3:221435-221734 Augustus predicted protein sequence Tobacco scaffold792_contigs=3~221435-221734 RVT_3 PF13456.1 g92626.t1 - 1.7E-009 37.3 0 0.000000002 37.1 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:174275-174562 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~174275-174562 DUF2242 PF10001.4 g96262.t1 - 0.092 12.6 0 0.092 12.6 0 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2242) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:242090-242821 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~242090-242821 Inhibitor_I68 PF10468.4 g29018.t1 - 0.21 11.8 0.1 0.21 11.8 0 2.1 2 0 0 2 2 2 0 Carboxypeptidase inhibitor I68 | Ref_seq=scaffold754_contigs=7, transcript_loc=scaffold754_contigs=7:20363-21289 Augustus predicted protein sequence Tobacco scaffold754_contigs=7~20363-21289 DUF3060 PF11259.3 g51544.t1 - 0.053 13.1 0.2 4.2 7 0 3 1 1 1 2 2 2 0 Protein of unknown function (DUF3060) | Ref_seq=scaffold1157_contigs=12, transcript_loc=scaffold1157_contigs=12:56006-59902 Augustus predicted protein sequence Tobacco scaffold1157_contigs=12~56006-59902 DUF1980 PF09323.5 g818.t1 - 0.33 10.6 1.5 0.34 10.6 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:70547-70753 Augustus predicted protein sequence Tobacco scaffold53_contigs=4~70547-70753 DUF2284 PF10050.4 g43618.t1 - 0.0073 15.9 3.2 0.01 15.4 2.2 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) | Ref_seq=scaffold1022_contigs=14, transcript_loc=scaffold1022_contigs=14:164335-164932 Augustus predicted protein sequence Tobacco scaffold1022_contigs=14~164335-164932 PRP4 PF08799.6 g73654.t1 - 0.12 11.6 0 0.2 10.9 0 1.3 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:98457-99087 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~98457-99087 NESP55 PF06390.7 g69177.t1 - 1.4 8.2 7.5 3.5 6.9 5.1 1.7 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:617334-617657 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~617334-617657 Hpt PF01627.18 g103600.t1 - 0.035 14 0.1 0.071 13.1 0 1.6 2 0 0 2 2 2 0 Hpt domain | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:140133-141032 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~140133-141032 Pox_A31 PF05771.6 g46050.t1 - 0.064 13 0 0.083 12.7 0 1.2 1 0 0 1 1 1 0 Poxvirus A31 protein | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:387171-387884 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~387171-387884 DUF486 PF04342.7 g9484.t1 - 0.079 13 0 0.27 11.2 0 1.8 2 1 1 3 3 3 0 Protein of unknown function, DUF486 | Ref_seq=scaffold367_contigs=1, transcript_loc=scaffold367_contigs=1:20649-21589 Augustus predicted protein sequence Tobacco scaffold367_contigs=1~20649-21589 RVP_2 PF08284.6 g73926.t1 - 9.2E-009 35.3 0 0.00000001 35.2 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:213889-214200 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~213889-214200 HAUS4 PF14735.1 g12380.t1 - 0.026 13.8 0.4 0.041 13.2 0.3 1.2 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:115845-116367 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~115845-116367 DUF4415 PF14384.1 g71885.t1 - 0.005 16.9 0.1 0.31 11.2 0 2.7 1 1 2 3 3 3 1 Domain of unknown function (DUF4415) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:16039-16308 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~16039-16308 DUF2924 PF11149.3 g31483.t1 - 0.097 12.6 0.3 0.22 11.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2924) | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:185816-188197 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~185816-188197 Ribosomal_L15e PF00827.12 g120579.t1 - 0.0036 16.8 2.7 0.0057 16.1 1.9 1.4 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:257640-258374 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~257640-258374 DUF4010 PF13194.1 g55607.t1 - 0.1 11.8 0.8 0.11 11.7 0.6 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:45249-45476 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~45249-45476 RVT_3 PF13456.1 g86619.t1 - 0.14 11.9 0 0.22 11.3 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:8569-10740 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~8569-10740 SinI PF08671.5 g52190.t1 - 0.43 10 1.8 3.2 7.2 0 2.4 2 0 0 2 2 2 0 Anti-repressor SinI | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:667593-668129 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~667593-668129 Reo_sigmaC PF04582.7 g79204.t1 - 0.026 13.6 0.1 0.029 13.5 0.1 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:224389-224810 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~224389-224810 Plasmod_MYXSPDY PF07981.6 g7841.t1 - 0.27 10.9 1.8 0.52 10 1.2 1.4 1 0 0 1 1 1 0 Plasmodium repeat_MYXSPDY | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:58770-59284 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~58770-59284 Ribosomal_L32p PF01783.18 g14172.t1 - 0.059 13.5 0.5 0.095 12.8 0.4 1.4 1 1 0 1 1 1 0 Ribosomal L32p protein family | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:248099-248895 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~248099-248895 Gly_rich PF12810.2 g35191.t1 - 0.015 14.8 6.2 0.014 14.9 4.3 1 1 0 0 1 1 1 0 Glycine rich protein | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:176223-176426 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~176223-176426 LRR_1 PF00560.28 g95993.t1 - 0.093 12.8 1 3.5 8 0.1 2.5 2 1 0 2 2 2 0 Leucine Rich Repeat | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:90698-90913 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~90698-90913 zf-CCHC PF00098.18 g73811.t1 - 0.054 13.4 5.1 0.1 12.5 3.5 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1549_contigs=4, transcript_loc=scaffold1549_contigs=4:5138-5392 Augustus predicted protein sequence Tobacco scaffold1549_contigs=4~5138-5392 PepSY_TM_2 PF13703.1 g87387.t1 - 0.13 12.4 0.1 0.17 12.1 0.1 1.2 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold1877_contigs=4, transcript_loc=scaffold1877_contigs=4:62260-62604 Augustus predicted protein sequence Tobacco scaffold1877_contigs=4~62260-62604 Hemerythrin PF01814.18 g13104.t1 - 0.054 13.6 1.3 0.17 12 0.6 1.8 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:126642-127363 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~126642-127363 FoP_duplication PF13865.1 g41170.t1 - 2.7 8.4 6.9 4.6 7.7 4.8 1.5 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:824879-825248 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~824879-825248 Sigma70_ner PF04546.8 g122255.t1 - 0.0011 18.6 5.1 0.0011 18.6 3.5 2.2 2 0 0 2 2 2 1 Sigma-70, non-essential region | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:174184-175335 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~174184-175335 DUF2526 PF10735.4 g42584.t1 - 0.041 13.8 0.1 0.063 13.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2526) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:117657-118049 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~117657-118049 DUF3456 PF11938.3 g20854.t1 - 0.061 13.3 0.1 0.076 13 0.1 1.1 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:370250-373994 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~370250-373994 CAP_N PF01213.14 g124667.t1 - 0.0077 15.5 1.3 0.0087 15.3 0.9 1.2 1 0 0 1 1 1 1 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:229437-229938 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~229437-229938 Myc_N PF01056.13 g103546.t1 - 0.012 14.7 4.4 0.013 14.6 3 1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:19267-19584 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~19267-19584 DBD_Tnp_Mut PF03108.10 g89678.t1 - 7.3E-009 35 0.1 8.7E-009 34.8 0 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:112018-112356 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~112018-112356 Rsm1 PF08600.5 g127273.t1 - 0.072 12.9 0.4 0.092 12.6 0.3 1.2 1 0 0 1 1 1 0 Rsm1-like | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:10522-10791 Augustus predicted protein sequence Tobacco scaffold2818_contigs=1~10522-10791 Trypan_PARP PF05887.6 g2657.t1 - 0.57 9.9 13.1 0.62 9.8 9.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:36972-37175 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~36972-37175 Ribosomal_S6 PF01250.12 g46302.t1 - 0.14 12 0.1 0.19 11.6 0 1.2 1 0 0 1 1 1 0 Ribosomal protein S6 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:9688-9963 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~9688-9963 DUF356 PF04009.7 g43276.t1 - 0.057 13.5 0 0.11 12.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF356) | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:393528-394274 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~393528-394274 SSFA2_C PF14723.1 g119141.t1 - 0.045 13.5 0 0.065 12.9 0 1.2 1 0 0 1 1 1 0 Sperm-specific antigen 2 C-terminus | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:1014605-1015753 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~1014605-1015753 RXT2_N PF08595.6 g47529.t1 - 0.051 13.3 7.5 0.061 13.1 5.2 1.2 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:175390-175659 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~175390-175659 Neisseria_TspB PF05616.8 g57324.t1 - 1.9 6.7 9.5 2 6.6 6.6 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:56696-57274 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~56696-57274 MCPVI PF02993.9 g103562.t1 - 0.36 10.9 3.6 0.36 10.9 2.5 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:53803-54565 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~53803-54565 DUF1670 PF07900.6 g8786.t1 - 0.12 11.5 0 0.13 11.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:183155-183458 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~183155-183458 Pentapeptide_4 PF13599.1 g25632.t1 - 0.057 13.2 0.2 0.4 10.5 0 2 2 0 0 2 2 2 0 Pentapeptide repeats (9 copies) | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:140193-140657 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~140193-140657 SCP-1 PF05483.7 g44977.t1 - 0.00031 18.6 0.3 0.00032 18.6 0.2 1 1 0 0 1 1 1 1 Synaptonemal complex protein 1 (SCP-1) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:147685-148223 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~147685-148223 Antimicrobial_5 PF08026.6 g108755.t1 - 0.34 10.8 4 6.3 6.7 2.7 2.2 1 1 0 1 1 1 0 Bee antimicrobial peptide | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:153142-153354 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~153142-153354 Transposase_28 PF04195.7 g64999.t1 - 0.0015 17.8 0.2 0.0018 17.6 0.1 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:181108-183181 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~181108-183181 DUF2660 PF10859.3 g3561.t1 - 0.031 14.4 0.1 0.054 13.7 0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2660) | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:13118-13450 Augustus predicted protein sequence Tobacco scaffold236_contigs=3~13118-13450 FYDLN_acid PF09538.5 g18304.t1 - 0.057 14 0.1 3.5 8.2 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold550_contigs=1, transcript_loc=scaffold550_contigs=1:2149-3163 Augustus predicted protein sequence Tobacco scaffold550_contigs=1~2149-3163 Ribosomal_L15e PF00827.12 g69467.t1 - 0.014 14.9 1.9 0.017 14.6 1.3 1.1 1 0 0 1 1 1 0 Ribosomal L15 | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:83761-84201 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~83761-84201 NESP55 PF06390.7 g32198.t1 - 0.00067 19.1 1.5 0.00083 18.8 1 1.2 1 0 0 1 1 1 1 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:310983-311356 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~310983-311356 Prefoldin_2 PF01920.15 g95246.t1 - 0.075 12.7 2.7 0.16 11.7 1.4 1.7 2 0 0 2 2 2 0 Prefoldin subunit | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:450989-451210 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~450989-451210 MPLKIP PF15502.1 g49368.t1 - 0.15 12.7 1.6 0.48 11.1 1.1 1.7 1 1 0 1 1 1 0 M-phase-specific PLK1-interacting protein | Ref_seq=scaffold1126_contigs=23, transcript_loc=scaffold1126_contigs=23:173858-174896 Augustus predicted protein sequence Tobacco scaffold1126_contigs=23~173858-174896 EamA PF00892.15 g107251.t1 - 0.52 10.3 3.3 2.5 8.1 0.1 2 1 1 1 2 2 2 0 EamA-like transporter family | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1028220-1028587 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1028220-1028587 Gloverin PF10793.4 g6120.t1 - 0.035 13.7 0.5 0.04 13.5 0.4 1 1 0 0 1 1 1 0 Gloverin-like protein | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:72429-72677 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~72429-72677 Spc7 PF08317.6 g16300.t1 - 0.038 12.6 1.7 0.056 12 1.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:17566-18502 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~17566-18502 Succ_CoA_lig PF13607.1 g72998.t1 - 0.0054 16.3 0.4 2.2 7.8 0 2.1 1 1 0 2 2 2 2 Succinyl-CoA ligase like flavodoxin domain | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:2938-3361 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~2938-3361 Trypan_PARP PF05887.6 g101133.t1 - 5.2 6.8 15.3 7.2 6.4 10.6 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:123245-124269 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~123245-124269 DUF1286 PF06939.6 g93760.t1 - 0.014 15.5 0 4.3 7.5 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1286) | Ref_seq=scaffold2026_contigs=2, transcript_loc=scaffold2026_contigs=2:1-1003 Augustus predicted protein sequence Tobacco scaffold2026_contigs=2~1-1003 zf-CCHC PF00098.18 g122965.t1 - 0.00015 21.5 0.7 0.00028 20.6 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:261789-263192 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~261789-263192 ATHILA PF03078.10 g65135.t1 - 0.000023 23.2 0 0.000025 23 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1397_contigs=9, transcript_loc=scaffold1397_contigs=9:130829-131095 Augustus predicted protein sequence Tobacco scaffold1397_contigs=9~130829-131095 Mfa2 PF08842.5 g102669.t1 - 0.089 12.1 0 0.1 11.9 0 1.1 1 0 0 1 1 1 0 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:21859-23106 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~21859-23106 RNA_pol_3_Rpc31 PF11705.3 g35339.t1 - 3.2 7.6 9.6 3.4 7.5 6.6 1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold867_contigs=4, transcript_loc=scaffold867_contigs=4:90943-91099 Augustus predicted protein sequence Tobacco scaffold867_contigs=4~90943-91099 DUF4173 PF13777.1 g87478.t1 - 0.77 9 2.8 5.4 6.2 0.4 2 1 1 0 2 2 2 0 Domain of unknown function (DUF4173) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:201021-201731 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~201021-201731 Med9 PF07544.8 g55499.t1 - 0.0038 16.9 0.4 0.0058 16.3 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:278702-279120 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~278702-279120 Ustilago_mating PF05722.7 g97560.t1 - 4.6 6.4 5.8 5.5 6.2 4 1.1 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold2138_contigs=7, transcript_loc=scaffold2138_contigs=7:167717-168049 Augustus predicted protein sequence Tobacco scaffold2138_contigs=7~167717-168049 DUF399 PF04187.8 g119199.t1 - 0.056 12.9 0 0.062 12.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF399 | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:94714-94989 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~94714-94989 PEARLI-4 PF05278.7 g57439.t1 - 0.15 11.4 0.4 0.18 11.1 0.3 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:174835-175304 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~174835-175304 DUF1049 PF06305.6 g107992.t1 - 0.0037 16.7 0.2 0.005 16.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1049) | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:46112-46444 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~46112-46444 NESP55 PF06390.7 g80064.t1 - 0.15 11.4 5.2 0.21 10.9 3.6 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:27652-28533 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~27652-28533 G6PD_N PF00479.17 g101938.t1 - 0.12 12.5 0.5 0.14 12.3 0.3 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:128590-129107 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~128590-129107 p25-alpha PF05517.7 g102761.t1 - 0.16 12.2 1.1 0.2 11.8 0.8 1.1 1 0 0 1 1 1 0 p25-alpha | Ref_seq=scaffold2267_contigs=4, transcript_loc=scaffold2267_contigs=4:16328-18074 Augustus predicted protein sequence Tobacco scaffold2267_contigs=4~16328-18074 SICA_beta PF12878.2 g27813.t1 - 0.069 12.9 0.9 0.15 11.8 0.6 1.6 1 1 0 1 1 1 0 SICA extracellular beta domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:346796-347200 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~346796-347200 HSCB_C PF07743.8 g111931.t1 - 2.7 8.5 5.6 3.6 8.1 0.4 2.2 1 1 0 2 2 2 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:117993-118304 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~117993-118304 SurA_N_3 PF13624.1 g66332.t1 - 0.062 13.2 0 0.077 12.9 0 1.1 1 0 0 1 1 1 0 SurA N-terminal domain | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:189286-189591 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~189286-189591 DUF1168 PF06658.7 g93353.t1 - 0.00061 19.3 6.7 0.00072 19 4.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1168) | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:111910-112716 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~111910-112716 PMD PF10536.4 g78927.t1 - 1.9E-010 40.2 0.1 2.2E-010 40 0 1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:45945-46363 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~45945-46363 Nudix_N PF12535.3 g54486.t1 - 0.042 13.2 0.1 0.4 10.1 0 2 2 0 0 2 2 2 0 Hydrolase of X-linked nucleoside diphosphate N terminal | Ref_seq=scaffold1207_contigs=28, transcript_loc=scaffold1207_contigs=28:707962-708186 Augustus predicted protein sequence Tobacco scaffold1207_contigs=28~707962-708186 Pet127 PF08634.5 g37886.t1 - 0.13 11.4 0 0.14 11.2 0 1.1 1 0 0 1 1 1 0 Mitochondrial protein Pet127 | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:189458-189775 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~189458-189775 FH2 PF02181.18 g68800.t1 - 0.0041 16 0 0.0052 15.7 0 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1480_contigs=4, transcript_loc=scaffold1480_contigs=4:102813-105598 Augustus predicted protein sequence Tobacco scaffold1480_contigs=4~102813-105598 Daxx PF03344.10 g10939.t1 - 0.013 13.9 14 0.017 13.6 9.7 1.1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:277051-277635 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~277051-277635 ATG16 PF08614.6 g45423.t1 - 0.041 13.7 0.9 0.052 13.3 0.6 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:417185-419273 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~417185-419273 KaiA PF07688.7 g35371.t1 - 0.069 12.4 0 0.094 11.9 0 1.1 1 0 0 1 1 1 0 KaiA domain | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:60992-61429 Augustus predicted protein sequence Tobacco scaffold871_contigs=9~60992-61429 CFC PF09443.5 g35503.t1 - 0.28 10.8 3.2 59 3.4 0 3.4 3 0 0 3 3 3 0 Cripto_Frl-1_Cryptic (CFC) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:237660-237986 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~237660-237986 Pex14_N PF04695.8 g16177.t1 - 0.13 12.2 4.9 1 9.4 0.1 2.9 3 0 0 3 3 3 0 Peroxisomal membrane anchor protein (Pex14p) conserved region | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:19929-20603 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~19929-20603 Glutaredoxin2_C PF04399.8 g29092.t1 - 0.12 11.9 1.1 0.25 10.8 0.3 1.7 1 1 1 2 2 2 0 Glutaredoxin 2, C terminal domain | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:97098-97454 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~97098-97454 FXR1P_C PF12235.3 g50746.t1 - 0.21 11.6 5.8 0.26 11.3 3.8 1.3 1 1 0 1 1 1 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:13735-14133 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~13735-14133 DUF1581 PF07619.6 g9555.t1 - 0.058 13.3 0.1 0.082 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1581) | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:191-466 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~191-466 Herpes_capsid PF06112.6 g105435.t1 - 2.2 8.3 11.4 3.3 7.7 7.9 1.2 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:146647-147715 Augustus predicted protein sequence Tobacco scaffold2355_contigs=18~146647-147715 DUF805 PF05656.9 g98541.t1 - 0.27 11 0.1 0.27 11 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF805) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:118919-119685 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~118919-119685 Borrelia_P83 PF05262.6 g124847.t1 - 0.27 9.4 4.4 0.3 9.2 3.1 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:23123-23455 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~23123-23455 BAR PF03114.13 g123183.t1 - 0.089 12.2 0.1 0.27 10.6 0.1 1.7 2 0 0 2 2 2 0 BAR domain | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:33279-34633 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~33279-34633 zf-CCHC PF00098.18 g126841.t1 - 0.0071 16.2 0.2 0.011 15.5 0.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2806_contigs=1, transcript_loc=scaffold2806_contigs=1:18101-19272 Augustus predicted protein sequence Tobacco scaffold2806_contigs=1~18101-19272 Seryl_tRNA_N PF02403.17 g77040.t1 - 0.11 12.5 2.9 0.2 11.7 2 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:78079-78615 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~78079-78615 DUF1036 PF06282.6 g51987.t1 - 0.11 12.8 0.1 0.12 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1036) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:89221-89527 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~89221-89527 CNP1 PF08750.6 g93490.t1 - 0.085 12.5 1 0.099 12.3 0.7 1.1 1 0 0 1 1 1 0 CNP1-like family | Ref_seq=scaffold2021_contigs=4, transcript_loc=scaffold2021_contigs=4:43830-44060 Augustus predicted protein sequence Tobacco scaffold2021_contigs=4~43830-44060 DUF4219 PF13961.1 g83117.t1 - 0.054 12.9 0.1 0.082 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:117227-117796 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~117227-117796 DM4_12 PF07841.8 g6959.t1 - 0.12 12.7 0 0.3 11.4 0 1.7 1 0 0 1 1 1 0 DM4/DM12 family | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:182319-183568 Augustus predicted protein sequence Tobacco scaffold306_contigs=7~182319-183568 Flavi_NS4B PF01349.12 g88913.t1 - 0.065 12.1 0.2 0.1 11.5 0.1 1.2 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4B | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:100255-100617 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~100255-100617 Seryl_tRNA_N PF02403.17 g97381.t1 - 0.08 12.9 6 0.17 11.8 4.2 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold2135_contigs=3, transcript_loc=scaffold2135_contigs=3:15883-16757 Augustus predicted protein sequence Tobacco scaffold2135_contigs=3~15883-16757 Fib_alpha PF08702.5 g32717.t1 - 0.12 12.5 0.8 0.17 12 0.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:763573-764057 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~763573-764057 Radial_spoke_3 PF06098.6 g99240.t1 - 0.23 10.4 5.5 0.28 10.1 3.8 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:126955-127356 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~126955-127356 Matrilin_ccoil PF10393.4 g129076.t1 - 4.7E-010 38.6 0 0.092 12.1 0 3.4 3 0 0 3 3 3 3 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold2914_contigs=1, transcript_loc=scaffold2914_contigs=1:24184-25681 Augustus predicted protein sequence Tobacco scaffold2914_contigs=1~24184-25681 IFP_35_N PF07334.8 g68231.t1 - 0.012 15.5 4.6 1.6 8.7 0.1 2.4 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:434091-434600 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~434091-434600 DUF4233 PF14017.1 g31355.t1 - 0.09 12.7 1.4 0.17 11.8 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) | Ref_seq=scaffold794_contigs=4, transcript_loc=scaffold794_contigs=4:34636-35229 Augustus predicted protein sequence Tobacco scaffold794_contigs=4~34636-35229 ATHILA PF03078.10 g71617.t1 - 0.11 11.1 0.1 0.12 10.9 0.1 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:166491-166850 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~166491-166850 DUF3316 PF11777.3 g16091.t1 - 0.11 12.2 0.4 0.16 11.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3316) | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:289703-290180 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~289703-290180 FH2 PF02181.18 g77149.t1 - 0.015 14.2 0.1 0.02 13.8 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:17146-19070 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~17146-19070 ATHILA PF03078.10 g127743.t1 - 0.00032 19.3 0 0.00033 19.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2835_contigs=1, transcript_loc=scaffold2835_contigs=1:16486-16695 Augustus predicted protein sequence Tobacco scaffold2835_contigs=1~16486-16695 ArfGap PF01412.13 g2043.t1 - 0.075 12.8 0.1 0.11 12.3 0.1 1.3 1 1 0 1 1 1 0 Putative GTPase activating protein for Arf | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:60087-60920 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~60087-60920 BCMA-Tall_bind PF09257.5 g100450.t1 - 0.2 11.6 1.3 0.33 10.9 0.9 1.3 1 0 0 1 1 1 0 BCMA, TALL-1 binding | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:93830-94362 Augustus predicted protein sequence Tobacco scaffold2189_contigs=3~93830-94362 DUF566 PF04484.7 g69992.t1 - 0.042 13.3 0.1 0.061 12.8 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF566) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:48435-48848 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~48435-48848 MMS22L_N PF14910.1 g17324.t1 - 0.13 10.4 0.1 0.17 10.1 0.1 1.1 1 0 0 1 1 1 0 S-phase genomic integrity recombination mediator, N-terminal | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:177160-178042 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~177160-178042 DUF1636 PF07845.6 g94295.t1 - 0.011 15.9 0.2 0.013 15.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:519320-519937 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~519320-519937 DUF1508 PF07411.7 g126238.t1 - 0.063 12.7 0.2 4.1 6.9 0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1508) | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:17109-17427 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~17109-17427 DUF1049 PF06305.6 g102230.t1 - 0.011 15.1 0.1 5 6.6 0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:77930-78808 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~77930-78808 ABC_membrane_3 PF13748.1 g69539.t1 - 0.008 15.2 0.5 0.011 14.7 0.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:387633-389971 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~387633-389971 TAN PF11640.3 g26354.t1 - 0.0068 16.1 0.1 0.014 15.1 0.1 1.5 1 1 0 1 1 1 1 Telomere-length maintenance and DNA damage repair | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:155287-155738 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~155287-155738 Chromo PF00385.19 g16434.t1 - 0.00019 20.9 0 0.00029 20.4 0 1.2 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold515_contigs=6, transcript_loc=scaffold515_contigs=6:127772-128415 Augustus predicted protein sequence Tobacco scaffold515_contigs=6~127772-128415 ATHILA PF03078.10 g81064.t1 - 0.000064 21.7 0 0.00024 19.8 0 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:138880-139470 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~138880-139470 DUF3222 PF11519.3 g59406.t1 - 0.36 10.8 2.4 0.55 10.2 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3222) | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:65673-67753 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~65673-67753 Cast PF10174.4 g4323.t1 - 0.012 13.7 0.7 0.013 13.5 0.5 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:104857-106157 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~104857-106157 DUF4430 PF14478.1 g43909.t1 - 0.067 13.2 0 0.091 12.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:315332-315601 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~315332-315601 Abdominal-A PF12407.3 g66840.t1 - 0.06 12.8 0.3 0.11 12 0.2 1.5 1 0 0 1 1 1 0 Homeobox protein | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:101064-101318 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~101064-101318 Exo5 PF09810.4 g30041.t1 - 0.0026 17 0.1 0.0058 15.9 0 1.7 1 1 1 2 2 2 1 Exonuclease V - a 5' deoxyribonuclease | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:273902-274603 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~273902-274603 IFP_35_N PF07334.8 g48171.t1 - 0.15 12 2.2 0.17 11.8 0.6 1.8 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:430460-431464 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~430460-431464 DUF3012 PF11216.3 g33662.t1 - 0.21 11.2 0.2 0.21 11.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3012) | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:320886-321092 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~320886-321092 GVQW PF13900.1 g18161.t1 - 0.01 15.8 1.2 0.035 14 0.1 2.1 2 0 0 2 2 2 1 Putative binding domain | Ref_seq=scaffold546_contigs=9, transcript_loc=scaffold546_contigs=9:115918-116235 Augustus predicted protein sequence Tobacco scaffold546_contigs=9~115918-116235 PX PF00787.19 g109805.t1 - 0.043 13.6 0 0.05 13.3 0 1.1 1 0 0 1 1 1 0 PX domain | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:199706-200550 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~199706-200550 API5 PF05918.6 g39393.t1 - 0.9 7.9 5.9 1 7.7 4.1 1 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:57197-57747 Augustus predicted protein sequence Tobacco scaffold954_contigs=1~57197-57747 RepB-RCR_reg PF10723.4 g130126.t1 - 0.0022 17.7 1.4 0.75 9.5 0.2 2.3 2 0 0 2 2 2 2 Replication regulatory protein RepB | Ref_seq=scaffold3506_contigs=1, transcript_loc=scaffold3506_contigs=1:2117-2565 Augustus predicted protein sequence Tobacco scaffold3506_contigs=1~2117-2565 DUF4568 PF15132.1 g44585.t1 - 0.034 13.3 0.3 0.18 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4568) | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:470950-471513 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~470950-471513 HAS-barrel PF09378.5 g123505.t1 - 0.086 12.7 0 8.3 6.3 0 2.7 2 1 0 2 2 2 0 HAS barrel domain | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:72929-73267 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~72929-73267 PRP21_like_P PF12230.3 g124996.t1 - 0.12 11.8 1.4 0.16 11.4 1 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein | Ref_seq=scaffold2766_contigs=1, transcript_loc=scaffold2766_contigs=1:73153-73687 Augustus predicted protein sequence Tobacco scaffold2766_contigs=1~73153-73687 DUF1266 PF06889.6 g50484.t1 - 3.7 7.3 8.9 4.5 7 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1266) | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:104760-105050 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~104760-105050 zf-FPG_IleRS PF06827.9 g54629.t1 - 0.071 12.7 0.8 0.15 11.7 0.2 1.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:393548-393939 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~393548-393939 Dak2 PF02734.12 g100810.t1 - 0.052 13.2 0.2 0.092 12.4 0.1 1.4 1 1 0 1 1 1 0 DAK2 domain | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:55116-55480 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~55116-55480 Cytadhesin_P30 PF07271.6 g73210.t1 - 3.8 6.6 10.8 5.8 6.1 7.5 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1532_contigs=5, transcript_loc=scaffold1532_contigs=5:71086-73417 Augustus predicted protein sequence Tobacco scaffold1532_contigs=5~71086-73417 CCDC155 PF14662.1 g42495.t1 - 0.018 14.6 4.7 0.021 14.4 3.2 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 | Ref_seq=scaffold1009_contigs=17, transcript_loc=scaffold1009_contigs=17:14434-14919 Augustus predicted protein sequence Tobacco scaffold1009_contigs=17~14434-14919 DNA_ligase_A_N PF04675.9 g2738.t1 - 0.015 15.1 0.5 0.016 15 0.3 1 1 0 0 1 1 1 0 DNA ligase N terminus | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:214639-214872 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~214639-214872 Rubella_E2 PF05749.6 g125414.t1 - 0.019 14.2 0.2 0.028 13.6 0.2 1.2 1 0 0 1 1 1 0 Rubella membrane glycoprotein E2 | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:58276-58713 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~58276-58713 HALZ PF02183.13 g68247.t1 - 0.0071 16 6.4 0.37 10.5 0.9 2.5 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:9309-9752 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~9309-9752 KASH PF10541.4 g62451.t1 - 0.019 14.7 0.5 0.031 14 0.3 1.4 1 0 0 1 1 1 0 Nuclear envelope localisation domain | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:260030-260383 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~260030-260383 Lipase_bact_N PF12262.3 g14030.t1 - 0.0037 16.5 0 0.012 14.8 0 1.7 1 1 1 2 2 2 1 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:46257-46943 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~46257-46943 gag_pre-integrs PF13976.1 g1533.t1 - 0.0013 18.2 0.2 0.0022 17.5 0.1 1.5 1 1 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:236134-237066 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~236134-237066 MDM1 PF15501.1 g61242.t1 - 0.0085 15 2.4 0.01 14.8 1.6 1.1 1 0 0 1 1 1 1 Nuclear protein MDM1 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:1631-1933 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~1631-1933 Involucrin PF00904.12 g6106.t1 - 0.28 11.7 1.4 0.58 10.8 0.9 1.6 1 0 0 1 1 1 0 Involucrin repeat | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:46110-47472 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~46110-47472 Gag_p12 PF01141.13 g35835.t1 - 0.083 13 0.2 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 Gag polyprotein, inner coat protein p12 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:574909-575711 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~574909-575711 ImmE5 PF11480.3 g19768.t1 - 0.11 12.2 0 0.17 11.7 0 1.3 1 0 0 1 1 1 0 Colicin-E5 Imm protein | Ref_seq=scaffold572_contigs=22, transcript_loc=scaffold572_contigs=22:394584-394841 Augustus predicted protein sequence Tobacco scaffold572_contigs=22~394584-394841 HrpB7 PF09486.5 g74106.t1 - 0.025 14.5 0.4 0.031 14.2 0.3 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:552601-553050 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~552601-553050 DUF4290 PF14123.1 g40839.t1 - 0.0033 16.6 0.1 0.0044 16.2 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4290) | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:41357-41665 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~41357-41665 BRE1 PF08647.6 g119014.t1 - 0.12 12.3 0.6 0.18 11.8 0.4 1.2 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:787681-788134 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~787681-788134 Retrotrans_gag PF03732.12 g62350.t1 - 0.038 14 0.4 0.038 14 0.3 1.5 1 1 1 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:489558-489785 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~489558-489785 BLYB PF05289.6 g74166.t1 - 0.062 13.1 0.5 0.099 12.4 0.3 1.4 1 0 0 1 1 1 0 Borrelia hemolysin accessory protein | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:646586-647090 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~646586-647090 DUF2215 PF10225.4 g47619.t1 - 0.022 14.2 2.7 0.027 13.9 1.9 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:358804-359295 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~358804-359295 HSBP1 PF06825.7 g32122.t1 - 0.0068 15.9 0.5 0.011 15.3 0.3 1.3 1 0 0 1 1 1 1 Heat shock factor binding protein 1 | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:85456-85921 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~85456-85921 HTH_Tnp_Mu_2 PF09039.6 g2.t1 - 0.15 11.8 0 0.18 11.5 0 1.1 1 0 0 1 1 1 0 Mu DNA binding, I gamma subdomain | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:13643-15671 Augustus predicted protein sequence Tobacco scaffold1_contigs=5~13643-15671 TPP_enzyme_C PF02775.16 g101147.t1 - 0.074 12.6 0.2 0.094 12.2 0.2 1.1 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:149381-149773 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~149381-149773 VGCC_beta4Aa_N PF12052.3 g78707.t1 - 0.001 18.8 0.6 0.001 18.8 0.4 1.7 2 0 0 2 2 2 1 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:11655-12182 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~11655-12182 DUF2985 PF11204.3 g44757.t1 - 0.067 12.9 0.9 0.45 10.2 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:20915-21262 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~20915-21262 bZIP_1 PF00170.16 g48104.t1 - 0.0053 16.6 1.6 0.0075 16.2 0.2 1.8 2 0 0 2 2 2 1 bZIP transcription factor | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:218356-220202 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~218356-220202 ERG4_ERG24 PF01222.12 g95466.t1 - 0.06 11.8 0 0.071 11.6 0 1 1 0 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:145596-145802 Augustus predicted protein sequence Tobacco scaffold2060_contigs=14~145596-145802 DUF2076 PF09849.4 g102292.t1 - 8.2 6.4 6.9 12 5.8 4.8 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:193521-196071 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~193521-196071 DNAP_B_exo_N PF08452.5 g59143.t1 - 0.067 12.4 2.3 6.4 6.1 0 3.3 2 1 1 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:78364-78796 Augustus predicted protein sequence Tobacco scaffold1281_contigs=3~78364-78796 UPF0146 PF03686.8 g45017.t1 - 0.12 12.1 0.1 0.15 11.8 0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:229329-229589 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~229329-229589 Nup_retrotrp_bd PF10599.4 g19108.t1 - 0.12 13 1.8 0.13 12.9 1.3 1.1 1 0 0 1 1 1 0 Retro-transposon transporting motif | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:314351-314720 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~314351-314720 GlpM PF06942.7 g48634.t1 - 0.041 14.1 0 0.044 14 0 1.1 1 0 0 1 1 1 0 GlpM protein | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1314904-1315344 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~1314904-1315344 NAM-associated PF14303.1 g22329.t1 - 0.0004 20.7 4.1 0.00048 20.4 2.9 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:155812-156054 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~155812-156054 Halo_GVPC PF05465.8 g3534.t1 - 0.027 14.4 0.1 0.048 13.6 0 1.4 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:111936-112151 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~111936-112151 DUF4377 PF14302.1 g55770.t1 - 0.021 14.7 0 0.027 14.3 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4377) | Ref_seq=scaffold1225_contigs=7, transcript_loc=scaffold1225_contigs=7:72852-74885 Augustus predicted protein sequence Tobacco scaffold1225_contigs=7~72852-74885 DUF966 PF06136.8 g84126.t1 - 1.2 8.5 7.4 1.3 8.3 5.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF966) | Ref_seq=scaffold1812_contigs=3, transcript_loc=scaffold1812_contigs=3:126298-126585 Augustus predicted protein sequence Tobacco scaffold1812_contigs=3~126298-126585 Mei4 PF13971.1 g61224.t1 - 0.13 11.2 0.5 0.14 11 0.3 1.2 1 1 0 1 1 1 0 Meiosis-specific protein Mei4 | Ref_seq=scaffold1329_contigs=11, transcript_loc=scaffold1329_contigs=11:257919-258146 Augustus predicted protein sequence Tobacco scaffold1329_contigs=11~257919-258146 DUF22 PF01629.11 g20167.t1 - 0.075 12.5 0 0.12 11.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF22 | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:221255-223205 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~221255-223205 Mito_fiss_reg PF05308.6 g43396.t1 - 0.036 13.4 0.1 0.04 13.2 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:146174-146611 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~146174-146611 Flavi_propep PF01570.12 g65928.t1 - 0.009 15.7 0.6 3.2 7.5 0.1 2.2 2 0 0 2 2 2 2 Flavivirus polyprotein propeptide | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:87559-90503 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~87559-90503 MHCassoc_trimer PF08831.5 g22231.t1 - 0.03 14.1 0.8 0.053 13.3 0.5 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold616_contigs=8, transcript_loc=scaffold616_contigs=8:25865-26266 Augustus predicted protein sequence Tobacco scaffold616_contigs=8~25865-26266 LPP PF04728.8 g82695.t1 - 0.041 13.6 0 11 5.9 0 2.2 2 0 0 2 2 2 0 Lipoprotein leucine-zipper | Ref_seq=scaffold1761_contigs=4, transcript_loc=scaffold1761_contigs=4:6234-7271 Augustus predicted protein sequence Tobacco scaffold1761_contigs=4~6234-7271 Dimer_Tnp_hAT PF05699.9 g1392.t1 - 0.042 13.4 0 0.062 12.9 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:24490-25608 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~24490-25608 AChE_tetra PF08674.5 g40827.t1 - 0.0097 15.4 0.9 0.015 14.7 0.7 1.3 1 0 0 1 1 1 1 Acetylcholinesterase tetramerisation domain | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:27810-28247 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~27810-28247 Phage_terminase PF10668.4 g5435.t1 - 0.034 13.9 0.1 0.043 13.5 0.1 1.2 1 0 0 1 1 1 0 Phage terminase small subunit | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:44091-44321 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~44091-44321 ING PF12998.2 g46531.t1 - 0.041 14.1 0.5 0.049 13.9 0.3 1.1 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:27383-27619 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~27383-27619 Remorin_N PF03766.8 g68941.t1 - 0.1 12.3 4 0.13 12 2.8 1.2 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:176074-176745 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~176074-176745 DUF605 PF04652.11 g62672.t1 - 0.47 9.8 9.9 0.6 9.4 6.9 1.2 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:191923-192678 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~191923-192678 Oxidored_q1_N PF00662.15 g108361.t1 - 5.7 6.5 6.4 5.7 6.5 0.4 2 1 1 1 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | Ref_seq=scaffold2443_contigs=3, transcript_loc=scaffold2443_contigs=3:6505-6978 Augustus predicted protein sequence Tobacco scaffold2443_contigs=3~6505-6978 DUF2083 PF09856.4 g23718.t1 - 0.0014 18.3 1.3 0.0017 17.9 0.9 1.3 1 1 0 1 1 1 1 Predicted transcriptional regulator (DUF2083) | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:495233-495490 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~495233-495490 RIIa PF02197.12 g78665.t1 - 0.29 10.5 2 1.2 8.5 0 2.2 2 0 0 2 2 2 0 Regulatory subunit of type II PKA R-subunit | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:31567-33173 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~31567-33173 Ribosomal_L15e PF00827.12 g34490.t1 - 0.00086 18.8 2 0.0018 17.8 1.4 1.5 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:139823-140740 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~139823-140740 CheX PF13690.1 g102228.t1 - 0.012 15.4 1.2 0.034 14 0.6 1.9 2 0 0 2 2 2 0 Chemotaxis phosphatase CheX | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:74494-77047 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~74494-77047 FH2 PF02181.18 g104756.t1 - 0.024 13.5 0.2 0.026 13.4 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:188826-189116 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~188826-189116 3-PAP PF12578.3 g124633.t1 - 0.0074 16.1 0.3 0.011 15.5 0.2 1.2 1 0 0 1 1 1 1 Myotubularin-associated protein | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:168200-168706 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~168200-168706 DUF3297 PF11730.3 g34285.t1 - 0.13 11.9 0 0.26 10.9 0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3297) | Ref_seq=scaffold849_contigs=5, transcript_loc=scaffold849_contigs=5:31909-32240 Augustus predicted protein sequence Tobacco scaffold849_contigs=5~31909-32240 KASH PF10541.4 g125446.t1 - 3.2 7.6 7.1 0.43 10.4 1.7 1.9 2 0 0 2 2 2 0 Nuclear envelope localisation domain | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:127505-127966 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~127505-127966 zf-CCHC_4 PF14392.1 g96299.t1 - 0.00032 20.3 0 0.00053 19.6 0 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:56057-56341 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~56057-56341 3D PF06725.6 g106711.t1 - 0.002 18 0 0.003 17.4 0 1.4 1 0 0 1 1 1 1 3D domain | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:407044-407271 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~407044-407271 DUF1811 PF08838.5 g14861.t1 - 0.011 15.6 0 0.016 15.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1811) | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:78341-79239 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~78341-79239 DUF4515 PF14988.1 g78091.t1 - 0.012 15.2 6.6 0.017 14.7 4.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:393852-394430 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~393852-394430 ThiF PF00899.16 g48972.t1 - 0.0046 16.7 0 0.0059 16.4 0 1.1 1 0 0 1 1 1 1 ThiF family | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:43829-44152 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~43829-44152 CDRN PF05174.7 g101964.t1 - 0.089 12.2 0.5 0.53 9.7 0 2.1 2 0 0 2 2 2 0 Cysteine-rich D. radiodurans N terminus | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:207436-208156 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~207436-208156 PT PF04886.7 g123597.t1 - 0.019 14.2 0.4 0.036 13.3 0.3 1.4 1 0 0 1 1 1 0 PT repeat | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:84221-84571 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~84221-84571 Herpes_UL49_5 PF05702.6 g72891.t1 - 0.34 10.8 1.4 18 5.3 0 2.2 2 0 0 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:91788-92592 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~91788-92592 Vitelline_membr PF10542.4 g89383.t1 - 1.4 8.6 6.4 0.17 11.5 1.4 1.7 2 0 0 2 2 2 0 Vitelline membrane cysteine-rich region | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:26424-26651 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~26424-26651 PTS_2-RNA PF01885.11 g22129.t1 - 0.044 13 0 0.051 12.8 0 1.1 1 0 0 1 1 1 0 RNA 2'-phosphotransferase, Tpt1 / KptA family | Ref_seq=scaffold613_contigs=1, transcript_loc=scaffold613_contigs=1:49705-53334 Augustus predicted protein sequence Tobacco scaffold613_contigs=1~49705-53334 DUF4248 PF14053.1 g114724.t1 - 0.007 15.9 0 0.011 15.2 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4248) | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:14036-14494 Augustus predicted protein sequence Tobacco scaffold2654_contigs=6~14036-14494 Atg14 PF10186.4 g15686.t1 - 0.046 12.6 0.1 0.053 12.4 0.1 1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:87979-88570 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~87979-88570 CobS_N PF12556.3 g129385.t1 - 0.14 11.5 0.6 0.6 9.5 0.1 2.2 2 0 0 2 2 2 0 Cobaltochelatase CobS subunit N terminal | Ref_seq=scaffold2946_contigs=1, transcript_loc=scaffold2946_contigs=1:11751-12017 Augustus predicted protein sequence Tobacco scaffold2946_contigs=1~11751-12017 DUF2881 PF11087.3 g33058.t1 - 0.0048 16.3 0.2 0.0071 15.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2881) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:262460-264164 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~262460-264164 Hemopexin PF00045.14 g107968.t1 - 0.06 13 0.8 0.1 12.3 0.2 1.6 2 0 0 2 2 2 0 Hemopexin | Ref_seq=scaffold2424_contigs=6, transcript_loc=scaffold2424_contigs=6:48011-50456 Augustus predicted protein sequence Tobacco scaffold2424_contigs=6~48011-50456 MerR-DNA-bind PF09278.6 g54727.t1 - 0.017 15.5 0.6 0.024 15 0.4 1.3 1 0 0 1 1 1 0 MerR, DNA binding | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:173369-173617 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~173369-173617 DUF1687 PF07955.6 g1320.t1 - 0.016 15.1 1.9 1 9.3 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1687) | Ref_seq=scaffold174_contigs=3, transcript_loc=scaffold174_contigs=3:586-1042 Augustus predicted protein sequence Tobacco scaffold174_contigs=3~586-1042 Glycos_transf_3 PF00591.16 g103928.t1 - 0.0056 16.1 0.1 1.9 7.8 0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family, a/b domain | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:39292-39730 Augustus predicted protein sequence Tobacco scaffold2321_contigs=13~39292-39730 ATHILA PF03078.10 g12388.t1 - 8.5E-012 44.4 0 9.2E-012 44.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:149506-151333 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~149506-151333 PIRT PF15099.1 g8343.t1 - 0.077 12.2 0.4 0.23 10.7 0 1.7 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:241710-241943 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~241710-241943 SelB-wing_3 PF09107.6 g89089.t1 - 0.095 12.1 0 0.19 11.1 0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix | Ref_seq=scaffold1938_contigs=9, transcript_loc=scaffold1938_contigs=9:342960-345136 Augustus predicted protein sequence Tobacco scaffold1938_contigs=9~342960-345136 Fil_haemagg_2 PF13332.1 g22687.t1 - 0.042 13.6 2.3 0.058 13.1 1.6 1.1 1 0 0 1 1 1 0 Haemagluttinin repeat | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:122239-122841 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~122239-122841 NTase_sub_bind PF08780.6 g85954.t1 - 0.057 13.1 0.2 0.13 12 0.1 1.6 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:235506-236675 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~235506-236675 FemAB PF02388.11 g36667.t1 - 0.11 11.1 0 0.13 10.9 0 1 1 0 0 1 1 1 0 FemAB family | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:212285-212542 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~212285-212542 GrpE PF01025.14 g8100.t1 - 0.0036 16.8 3.9 0.076 12.5 4.7 1.7 2 0 0 2 2 2 1 GrpE | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:34742-35827 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~34742-35827 Sugarporin_N PF11471.3 g3737.t1 - 0.083 12.5 0.1 0.23 11.1 0 1.8 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold239_contigs=3, transcript_loc=scaffold239_contigs=3:82757-83206 Augustus predicted protein sequence Tobacco scaffold239_contigs=3~82757-83206 WSC PF01822.14 g8784.t1 - 0.064 13.1 2.4 0.073 13 1.7 1 1 0 0 1 1 1 0 WSC domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:177451-177660 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~177451-177660 GRP PF07172.6 g94534.t1 - 0.00039 20.8 41.2 0.00039 20.8 28.5 2.2 1 1 1 2 2 2 1 Glycine rich protein family | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:6605-7769 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~6605-7769 Cytadhesin_P30 PF07271.6 g82448.t1 - 0.24 10.6 4.6 0.26 10.5 3.2 1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:530126-530479 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~530126-530479 Kelch_5 PF13854.1 g71649.t1 - 0.44 10.5 2.9 0.71 9.9 2 1.4 1 1 0 1 1 1 0 Kelch motif | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:218513-218734 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~218513-218734 Rsm1 PF08600.5 g66261.t1 - 0.056 13.3 0.1 0.078 12.8 0.1 1.4 1 0 0 1 1 1 0 Rsm1-like | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:66292-66813 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~66292-66813 MHC2-interact PF09307.5 g121853.t1 - 0.41 10.4 2.4 0.59 9.9 1.1 1.6 1 1 1 2 2 2 0 CLIP, MHC2 interacting | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:569389-569742 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~569389-569742 SlyX PF04102.7 g92318.t1 - 0.55 10.6 3.7 2.3 8.6 1.5 2.3 1 1 0 2 2 2 0 SlyX | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:269029-271314 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~269029-271314 PaaSYMP PF14738.1 g77100.t1 - 0.036 13.7 17.2 0.04 13.6 12 1.1 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 | Ref_seq=scaffold1626_contigs=2, transcript_loc=scaffold1626_contigs=2:16167-16613 Augustus predicted protein sequence Tobacco scaffold1626_contigs=2~16167-16613 DUF2321 PF10083.4 g75938.t1 - 0.09 12.2 0 0.1 12 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:27277-27624 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~27277-27624 DUF2215 PF10225.4 g107499.t1 - 0.035 13.5 2.6 0.055 12.9 1.8 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:166048-167455 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~166048-167455 Bunya_NS-S PF01104.12 g109956.t1 - 0.037 13.4 2.1 3.7 7.1 0.2 2.1 1 1 1 2 2 2 0 Bunyavirus non-structural protein NS-s | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:37489-37740 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~37489-37740 U79_P34 PF03064.11 g36350.t1 - 0.04 13.4 6.5 0.043 13.3 4.5 1 1 0 0 1 1 1 0 HSV U79 / HCMV P34 | Ref_seq=scaffold884_contigs=5, transcript_loc=scaffold884_contigs=5:97710-98054 Augustus predicted protein sequence Tobacco scaffold884_contigs=5~97710-98054 Hid1 PF12722.2 g106426.t1 - 0.077 10.6 4.8 0.089 10.4 3.3 1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:175070-175737 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~175070-175737 NYD-SP28_assoc PF14775.1 g26718.t1 - 0.1 12.3 0.6 0.14 11.9 0.4 1.2 1 0 0 1 1 1 0 Sperm tail C-terminal domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:205133-205402 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~205133-205402 DUF4449 PF14613.1 g101419.t1 - 0.0068 16.3 0 0.0073 16.2 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4449) | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:218392-218661 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~218392-218661 Transposase_28 PF04195.7 g94506.t1 - 0.016 14.5 1.2 0.07 12.4 0.1 2.1 2 1 0 2 2 2 0 Putative gypsy type transposon | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:35143-36096 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~35143-36096 DUF241 PF03087.9 g125535.t1 - 0.012 15.1 5 0.013 15 3.5 1 1 0 0 1 1 1 0 Arabidopsis protein of unknown function | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:12194-12430 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~12194-12430 UBN2_3 PF14244.1 g61400.t1 - 2.3E-009 36.9 0 3.4E-009 36.4 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:171344-172138 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~171344-172138 DUF2046 PF09755.4 g66404.t1 - 0.0025 16.7 0.2 0.0029 16.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein H4 (DUF2046) | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:31724-32198 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~31724-32198 HTH_36 PF13730.1 g24280.t1 - 0.14 12.3 0 5.7 7.1 0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:9688-10768 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~9688-10768 DUF1999 PF09390.5 g120880.t1 - 0.27 10.5 1 5.1 6.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1999) | Ref_seq=scaffold2730_contigs=9, transcript_loc=scaffold2730_contigs=9:27797-28447 Augustus predicted protein sequence Tobacco scaffold2730_contigs=9~27797-28447 DUF1580 PF07618.6 g122649.t1 - 0.026 13.8 0 3.1 7.2 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1580) | Ref_seq=scaffold2747_contigs=3, transcript_loc=scaffold2747_contigs=3:47923-48325 Augustus predicted protein sequence Tobacco scaffold2747_contigs=3~47923-48325 Trp_oprn_chp PF09534.5 g112443.t1 - 3.6 7.1 12.6 4.3 6.9 1.7 2.1 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:42231-42960 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~42231-42960 ATHILA PF03078.10 g10379.t1 - 0.00000014 30.4 0 0.00000019 30 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:219756-221507 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~219756-221507 Transferase PF02458.10 g1516.t1 - 0.069 11.5 0 0.072 11.5 0 1.1 1 0 0 1 1 1 0 Transferase family | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:195284-195565 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~195284-195565 TruB-C_2 PF09157.6 g56419.t1 - 0.12 12.2 0.1 0.21 11.4 0 1.4 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:103309-104652 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~103309-104652 DUF2256 PF10013.4 g67060.t1 - 0.034 13.8 0.6 0.034 13.8 0.4 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:459534-459794 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~459534-459794 End_N_terminal PF12218.3 g54163.t1 - 0.099 12.1 0 0.2 11.1 0 1.5 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:51830-52294 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~51830-52294 YvbH_ext PF11724.3 g78796.t1 - 0.095 12.3 0.1 0.22 11.2 0 1.6 1 1 1 2 2 2 0 YvbH-like oligomerisation region | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:163585-164270 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~163585-164270 Red1 PF07964.6 g96460.t1 - 0.66 8 4.5 0.78 7.8 3.1 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:42193-42714 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~42193-42714 Pathogen_betaC1 PF09593.5 g81392.t1 - 0.11 12.1 0.1 0.14 11.9 0 1.2 1 0 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:151735-152046 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~151735-152046 PRESAN PF09687.5 g76008.t1 - 0.018 15.1 0.8 0.023 14.7 0.5 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal | Ref_seq=scaffold1606_contigs=13, transcript_loc=scaffold1606_contigs=13:300086-300460 Augustus predicted protein sequence Tobacco scaffold1606_contigs=13~300086-300460 MHCassoc_trimer PF08831.5 g62209.t1 - 0.11 12.4 0.5 0.14 12 0.4 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:191370-191672 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~191370-191672 DUF2215 PF10225.4 g48819.t1 - 0.0033 16.9 2.9 0.0037 16.7 2 1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:426703-427110 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~426703-427110 zf-LITAF-like PF10601.4 g125698.t1 - 3.1 7.7 5.9 2.7 7.9 2.9 1.8 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:82223-82513 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~82223-82513 Sugarporin_N PF11471.3 g82833.t1 - 0.19 11.3 1.4 0.35 10.5 0.9 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:47045-47635 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~47045-47635 Rhabdo_M1 PF03342.8 g92491.t1 - 0.019 14 0.4 0.02 14 0.3 1 1 0 0 1 1 1 0 Rhabdovirus M1 matrix protein (M1 polymerase-associated protein) | Ref_seq=scaffold1989_contigs=5, transcript_loc=scaffold1989_contigs=5:73924-74163 Augustus predicted protein sequence Tobacco scaffold1989_contigs=5~73924-74163 MCM PF00493.18 g86823.t1 - 0.046 12.5 0 0.052 12.3 0 1 1 0 0 1 1 1 0 MCM2/3/5 family | Ref_seq=scaffold1862_contigs=6, transcript_loc=scaffold1862_contigs=6:174506-174745 Augustus predicted protein sequence Tobacco scaffold1862_contigs=6~174506-174745 NeA_P2 PF12312.3 g72683.t1 - 0.0021 17.3 0.1 0.0023 17.2 0.1 1.1 1 0 0 1 1 1 1 Nepovirus subgroup A polyprotein | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:396441-396731 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~396441-396731 BNIP3 PF06553.7 g60086.t1 - 0.059 12.7 0.7 0.064 12.6 0.5 1 1 0 0 1 1 1 0 BNIP3 | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:282926-283225 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~282926-283225 DUF4462 PF14692.1 g32101.t1 - 0.18 11 0.6 0.33 10.2 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4462) | Ref_seq=scaffold810_contigs=11, transcript_loc=scaffold810_contigs=11:38368-38589 Augustus predicted protein sequence Tobacco scaffold810_contigs=11~38368-38589 FAR1 PF03101.10 g3299.t1 - 0.0024 18.3 0.1 0.0029 18 0.1 1.1 1 0 0 1 1 1 1 FAR1 DNA-binding domain | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:238608-239026 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~238608-239026 FH2 PF02181.18 g32805.t1 - 0.062 12.1 0.1 0.094 11.5 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold819_contigs=1, transcript_loc=scaffold819_contigs=1:37774-38535 Augustus predicted protein sequence Tobacco scaffold819_contigs=1~37774-38535 Med25_SD1 PF11235.3 g19597.t1 - 0.048 13.9 1.3 0.056 13.7 0.9 1 1 0 0 1 1 1 0 Mediator complex subunit 25 synapsin 1 | Ref_seq=scaffold570_contigs=9, transcript_loc=scaffold570_contigs=9:88477-88716 Augustus predicted protein sequence Tobacco scaffold570_contigs=9~88477-88716 C1_3 PF07649.7 g2923.t1 - 0.0078 16.2 4.6 0.071 13.1 0.8 2.4 2 0 0 2 2 2 1 C1-like domain | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:61538-63142 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~61538-63142 DUF755 PF05501.6 g34522.t1 - 0.072 13.1 3.6 0.078 13 2.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:21387-21620 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~21387-21620 UvsW PF11637.3 g9407.t1 - 0.099 12.3 0.1 10 5.9 0 2.4 2 0 0 2 2 2 0 ATP-dependant DNA helicase UvsW | Ref_seq=scaffold363_contigs=2, transcript_loc=scaffold363_contigs=2:12360-12846 Augustus predicted protein sequence Tobacco scaffold363_contigs=2~12360-12846 Glyco_hydro_7 PF00840.15 g64686.t1 - 0.09 11.1 0.3 0.12 10.7 0.2 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 7 | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:274388-274798 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~274388-274798 Protocadherin PF08374.6 g92707.t1 - 0.081 12.5 3.3 0.12 12 2.3 1.2 1 0 0 1 1 1 0 Protocadherin | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:343667-344546 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~343667-344546 Streptin-Immun PF11083.3 g38061.t1 - 0.13 12.2 0.5 0.2 11.6 0.3 1.3 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:113637-114567 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~113637-114567 HCMVantigenic_N PF12154.3 g4467.t1 - 0.042 13.7 0.3 0.068 13 0.2 1.4 1 0 0 1 1 1 0 Glycoprotein B N-terminal antigenic domain of HCMV | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:267397-268393 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~267397-268393 zinc_ribbon_5 PF13719.1 g112368.t1 - 0.032 13.7 0.1 0.17 11.4 0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:228595-229345 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~228595-229345 DUF1204 PF06721.6 g34742.t1 - 0.2 10.8 0.8 0.25 10.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1204) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:199884-200323 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~199884-200323 Ytp1 PF10355.4 g76464.t1 - 0.063 12.4 0.5 0.073 12.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (Ytp1) | Ref_seq=scaffold1614_contigs=5, transcript_loc=scaffold1614_contigs=5:19502-20197 Augustus predicted protein sequence Tobacco scaffold1614_contigs=5~19502-20197 RE_Alw26IDE PF09665.5 g116006.t1 - 0.073 11.7 0.1 0.086 11.5 0.1 1.1 1 0 0 1 1 1 0 Type II restriction endonuclease (RE_Alw26IDE) | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:382628-383075 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~382628-383075 Ipi1_N PF12333.3 g47392.t1 - 0.8 9.7 6.2 2 8.4 0.2 2.8 1 1 2 3 3 3 0 Rix1 complex component involved in 60S ribosome maturation | Ref_seq=scaffold1097_contigs=2, transcript_loc=scaffold1097_contigs=2:50629-51994 Augustus predicted protein sequence Tobacco scaffold1097_contigs=2~50629-51994 DUF4219 PF13961.1 g38037.t1 - 0.000052 22.5 0.4 0.000082 21.9 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:71631-71849 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~71631-71849 Myotub-related PF06602.9 g2939.t1 - 0.048 12.4 0 0.051 12.3 0 1 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:87199-87555 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~87199-87555 Tox-MPTase5 PF15641.1 g129607.t1 - 0.06 13.3 0.8 14 5.7 0 4.3 4 1 1 5 5 5 0 Metallopeptidase toxin 5 | Ref_seq=scaffold2998_contigs=1, transcript_loc=scaffold2998_contigs=1:5272-7463 Augustus predicted protein sequence Tobacco scaffold2998_contigs=1~5272-7463 PqqD PF05402.7 g831.t1 - 0.036 14 0.1 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold54_contigs=1, transcript_loc=scaffold54_contigs=1:1282-1773 Augustus predicted protein sequence Tobacco scaffold54_contigs=1~1282-1773 VGCC_beta4Aa_N PF12052.3 g29852.t1 - 0.32 10.8 7.7 1.2 9 0.2 3.3 4 0 0 4 4 4 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:258081-258404 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~258081-258404 DUF1985 PF09331.6 g116174.t1 - 0.02 14.6 0.2 0.033 14 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:41569-42449 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~41569-42449 KRAP_IP3R_bind PF14722.1 g28887.t1 - 0.14 11.7 0 0.18 11.3 0 1.1 1 0 0 1 1 1 0 Ki-ras-induced actin-interacting protein-IP3R-interacting domain | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:545149-545607 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~545149-545607 DUF2285 PF10074.4 g58229.t1 - 0.24 11.7 2.6 0.44 10.9 1.8 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:335998-336459 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~335998-336459 Presenilin PF01080.12 g21586.t1 - 0.22 10.2 1.9 0.27 10 1.3 1.1 1 0 0 1 1 1 0 Presenilin | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:76615-79339 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~76615-79339 zf-CCHC PF00098.18 g53612.t1 - 0.000034 23.5 0.9 0.00005 23 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:199909-200301 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~199909-200301 DTW PF03942.10 g55984.t1 - 0.0051 16 0 1.9 7.6 0 2.1 1 1 1 2 2 2 2 DTW domain | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:302977-303509 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~302977-303509 MHCassoc_trimer PF08831.5 g66244.t1 - 0.053 13.3 0.2 0.087 12.6 0.1 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:43737-44066 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~43737-44066 DUF1311 PF07007.7 g103598.t1 - 0.058 13.4 0 0.1 12.6 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1311) | Ref_seq=scaffold2306_contigs=40, transcript_loc=scaffold2306_contigs=40:139150-139818 Augustus predicted protein sequence Tobacco scaffold2306_contigs=40~139150-139818 DBD_Tnp_Mut PF03108.10 g88396.t1 - 0.00042 19.8 0.6 0.0011 18.4 0.2 1.9 1 1 1 2 2 2 1 MuDR family transposase | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:177779-178132 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~177779-178132 Tropomyosin PF00261.15 g103241.t1 - 0.032 13.3 3.3 0.28 10.2 1.5 2.1 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:185517-186212 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~185517-186212 LRRNT_2 PF08263.7 g12324.t1 - 0.00081 19.3 2 0.0017 18.3 0.9 1.8 1 1 1 2 2 2 1 Leucine rich repeat N-terminal domain | Ref_seq=scaffold425_contigs=5, transcript_loc=scaffold425_contigs=5:4904-5122 Augustus predicted protein sequence Tobacco scaffold425_contigs=5~4904-5122 SLD3 PF08639.5 g16035.t1 - 0.13 10.8 5.9 0.16 10.5 4.1 1.1 1 0 0 1 1 1 0 DNA replication regulator SLD3 | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:116378-119059 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~116378-119059 Gag_p12 PF01141.13 g27840.t1 - 0.075 13.1 0 0.12 12.4 0 1.3 1 0 0 1 1 1 0 Gag polyprotein, inner coat protein p12 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:387601-388349 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~387601-388349 DUF1985 PF09331.6 g105299.t1 - 1.2E-009 38.1 0 1.2E-009 38 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:239969-240202 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~239969-240202 Methyltransf_9 PF08003.6 g19117.t1 - 0.1 11.2 0 0.11 11.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:342552-343327 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~342552-343327 IFT57 PF10498.4 g29971.t1 - 0.025 13.3 0.3 0.031 13 0.2 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:130526-132364 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~130526-132364 Ribosomal_S14 PF00253.16 g86993.t1 - 0.06 12.7 0.3 0.08 12.3 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:488578-488784 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~488578-488784 CaATP_NAI PF12515.3 g37388.t1 - 0.015 14.7 1 0.042 13.3 0.7 1.8 1 0 0 1 1 1 0 Ca2+-ATPase N terminal autoinhibitory domain | Ref_seq=scaffold924_contigs=4, transcript_loc=scaffold924_contigs=4:139282-142471 Augustus predicted protein sequence Tobacco scaffold924_contigs=4~139282-142471 YadA_head PF05658.9 g107639.t1 - 1.5 9.1 8 0.57 10.5 2.5 2.4 2 1 0 2 2 2 0 Head domain of trimeric autotransporter adhesin | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:125979-126682 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~125979-126682 zf-CCHC PF00098.18 g11816.t1 - 0.0023 17.7 1.1 0.0041 16.9 0.7 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:313902-314870 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~313902-314870 DUF4611 PF15387.1 g28961.t1 - 0.01 15.9 4 0.017 15.2 2.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:94811-95430 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~94811-95430 YhdB PF14148.1 g9160.t1 - 0.12 12.1 0.3 0.5 10.1 0 1.9 2 0 0 2 2 2 0 YhdB-like protein | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:42496-46498 Augustus predicted protein sequence Tobacco scaffold353_contigs=4~42496-46498 Retrotrans_gag PF03732.12 g24378.t1 - 0.017 15.1 0 0.022 14.8 0 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:71078-71320 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~71078-71320 RVT_3 PF13456.1 g104473.t1 - 0.00023 20.8 0.5 0.00055 19.6 0.1 1.8 2 1 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:249123-249500 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~249123-249500 Erp_C PF06780.6 g15802.t1 - 0.14 12 0.1 0.18 11.6 0 1.1 1 0 0 1 1 1 0 Erp protein C-terminus | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:339418-339750 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~339418-339750 zf-CCHC_4 PF14392.1 g47611.t1 - 0.1 12.2 0.4 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:324468-324674 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~324468-324674 TFIIE-A_C-term PF11521.3 g38615.t1 - 0.12 12.3 0 0.14 12 0 1.1 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:204017-204220 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~204017-204220 SelR PF01641.13 g27648.t1 - 0.062 12.9 0.1 0.089 12.4 0.1 1.2 1 0 0 1 1 1 0 SelR domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:17623-17973 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~17623-17973 ATHILA PF03078.10 g69063.t1 - 0.00000078 28 0 0.00000087 27.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:381766-381999 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~381766-381999 DBD_Tnp_Mut PF03108.10 g51455.t1 - 0.12 12 0.6 0.19 11.3 0 1.7 2 0 0 2 2 2 0 MuDR family transposase | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:80785-81015 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~80785-81015 LURAP PF14854.1 g109950.t1 - 0.17 11.6 1.6 0.22 11.2 1.1 1.2 1 0 0 1 1 1 0 Leucine rich adaptor protein | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:12807-13138 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~12807-13138 DUF2175 PF09943.4 g36955.t1 - 0.063 13.3 0.1 0.087 12.8 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) | Ref_seq=scaffold905_contigs=2, transcript_loc=scaffold905_contigs=2:38571-39151 Augustus predicted protein sequence Tobacco scaffold905_contigs=2~38571-39151 Dec-1 PF04624.9 g45804.t1 - 0.02 14.5 0.7 0.02 14.5 0.5 2.1 2 0 0 2 2 2 0 Dec-1 repeat | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:105525-106342 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~105525-106342 Sec2p PF06428.6 g120297.t1 - 0.018 14.9 0.7 0.024 14.4 0.5 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:154307-154967 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~154307-154967 DUF3987 PF13148.1 g27265.t1 - 5.2 5.5 7.3 7.5 5 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) | Ref_seq=scaffold722_contigs=14, transcript_loc=scaffold722_contigs=14:519148-521250 Augustus predicted protein sequence Tobacco scaffold722_contigs=14~519148-521250 DivIC PF04977.10 g3353.t1 - 0.027 13.9 0.1 2.3 7.7 0 2.3 2 0 0 2 2 2 0 Septum formation initiator | Ref_seq=scaffold230_contigs=2, transcript_loc=scaffold230_contigs=2:78536-80122 Augustus predicted protein sequence Tobacco scaffold230_contigs=2~78536-80122 Tim54 PF11711.3 g113586.t1 - 0.012 14.2 1.4 0.015 13.9 1 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:187483-188270 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~187483-188270 DUF605 PF04652.11 g126270.t1 - 1 8.6 4.2 1 8.7 2.9 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:78062-79186 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~78062-79186 DUF1746 PF08508.5 g43983.t1 - 0.072 13 0 0.085 12.7 0 1.1 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1746) | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:95933-98669 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~95933-98669 zf-CCHC PF00098.18 g33664.t1 - 0.000075 22.4 1 0.00011 21.9 0.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:321635-322063 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~321635-322063 MDFI PF15316.1 g127868.t1 - 0.004 17.1 3.5 0.0044 17 1.9 1.4 1 1 0 1 1 1 1 MyoD family inhibitor | Ref_seq=scaffold2840_contigs=1, transcript_loc=scaffold2840_contigs=1:9843-11139 Augustus predicted protein sequence Tobacco scaffold2840_contigs=1~9843-11139 DUF1071 PF06378.6 g110873.t1 - 0.0073 15.4 0 3.2 6.8 0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1071) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:933066-935118 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~933066-935118 Astro_capsid PF03115.9 g77998.t1 - 0.018 13.3 1 0.018 13.3 0.7 1 1 0 0 1 1 1 0 Astrovirus capsid protein precursor | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:194624-195235 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~194624-195235 RVT_3 PF13456.1 g37112.t1 - 0.000000083 31.9 0.1 0.0000001 31.6 0.1 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:169177-169767 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~169177-169767 Prok-E2_B PF14461.1 g88568.t1 - 0.006 16.3 0 2.8 7.6 0 2.1 1 1 1 2 2 2 2 Prokaryotic E2 family B | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:52726-53540 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~52726-53540 FBPase PF00316.15 g87287.t1 - 0.078 11.7 0 0.093 11.5 0 1.1 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:228771-229888 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~228771-229888 TOBE PF03459.12 g5422.t1 - 0.029 14.4 0.1 7.2 6.7 0 2.2 2 0 0 2 2 2 0 TOBE domain | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:13300-13982 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~13300-13982 DUF1651 PF07864.6 g51392.t1 - 0.12 12.4 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1651) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:227518-227847 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~227518-227847 RAM PF15320.1 g54127.t1 - 0.096 12.9 0 0.11 12.7 0 1.2 1 0 0 1 1 1 0 mRNA cap methylation, RNMT-activating mini protein | Ref_seq=scaffold1202_contigs=2, transcript_loc=scaffold1202_contigs=2:15631-16070 Augustus predicted protein sequence Tobacco scaffold1202_contigs=2~15631-16070 CCDC155 PF14662.1 g34837.t1 - 0.000046 23.1 2.2 0.000059 22.7 1.6 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:37869-38450 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~37869-38450 DUF1082 PF06449.6 g113882.t1 - 0.082 12.8 0.1 0.14 12 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial domain of unknown function (DUF1082) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:636912-637445 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~636912-637445 DUF2264 PF10022.4 g61108.t1 - 0.005 15.5 0.2 0.006 15.2 0.2 1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:69347-69757 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~69347-69757 Caa3_CtaG PF09678.5 g88265.t1 - 0.0046 15.9 0.1 2.1 7.1 0 2.1 2 0 0 2 2 2 2 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:72244-72930 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~72244-72930 SNase PF00565.12 g33048.t1 - 0.053 13.7 0.3 0.1 12.8 0.1 1.6 1 1 0 1 1 1 0 Staphylococcal nuclease homologue | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:241686-242337 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~241686-242337 Gelsolin PF00626.17 g995.t1 - 0.13 12 0 0.21 11.3 0 1.2 1 0 0 1 1 1 0 Gelsolin repeat | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:17129-17896 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~17129-17896 DUF1652 PF07865.6 g1559.t1 - 0.059 12.9 0 0.09 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) | Ref_seq=scaffold185_contigs=2, transcript_loc=scaffold185_contigs=2:10053-10394 Augustus predicted protein sequence Tobacco scaffold185_contigs=2~10053-10394 DUF945 PF06097.6 g63765.t1 - 0.091 11.5 0 0.11 11.2 0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) | Ref_seq=scaffold1381_contigs=7, transcript_loc=scaffold1381_contigs=7:24000-24239 Augustus predicted protein sequence Tobacco scaffold1381_contigs=7~24000-24239 DUF2702 PF10863.3 g65660.t1 - 0.047 13.4 2.9 0.068 12.8 2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2702) | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:36174-36581 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~36174-36581 Trehalose_recp PF06151.8 g59560.t1 - 0.043 12.1 0.2 0.061 11.6 0.2 1.2 1 0 0 1 1 1 0 Trehalose receptor | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:50158-50592 Augustus predicted protein sequence Tobacco scaffold1293_contigs=3~50158-50592 Myosin_tail_1 PF01576.14 g20970.t1 - 0.031 12 0.8 0.035 11.8 0.5 1 1 0 0 1 1 1 0 Myosin tail | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:157243-157905 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~157243-157905 DUF4171 PF13775.1 g34642.t1 - 0.039 14.1 0.4 0.057 13.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4171) | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:134913-135844 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~134913-135844 DUF241 PF03087.9 g69078.t1 - 0.027 13.9 11.5 0.071 12.6 7.7 2 1 1 0 1 1 1 0 Arabidopsis protein of unknown function | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:400006-400908 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~400006-400908 Homoserine_dh PF00742.14 g67010.t1 - 0.071 12.7 0.2 0.15 11.7 0.1 1.5 2 0 0 2 2 2 0 Homoserine dehydrogenase | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:344032-345858 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~344032-345858 DDR PF08841.5 g41314.t1 - 0.053 12.3 0.1 0.058 12.2 0 1.1 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:116302-117121 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~116302-117121 HTH_20 PF12840.2 g116259.t1 - 0.082 12.7 0 7.3 6.4 0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:298699-299249 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~298699-299249 Shikimate_dh_N PF08501.6 g20668.t1 - 0.092 12.8 0 0.12 12.5 0 1.3 1 1 0 1 1 1 0 Shikimate dehydrogenase substrate binding domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:15765-16882 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~15765-16882 DUF4388 PF14332.1 g111184.t1 - 0.12 12.1 0 9.6 6.1 0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4388) | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:63632-64081 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~63632-64081 DUF3294 PF07957.6 g108027.t1 - 0.0083 15.6 0.2 0.011 15.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3294) | Ref_seq=scaffold2426_contigs=10, transcript_loc=scaffold2426_contigs=10:133678-133983 Augustus predicted protein sequence Tobacco scaffold2426_contigs=10~133678-133983 Toprim_C_rpt PF13368.1 g94006.t1 - 7.2 7.1 8 0.95 9.9 0.8 2.1 2 0 0 2 2 2 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:403551-403823 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~403551-403823 DUF4600 PF15372.1 g72968.t1 - 0.034 14.3 1.3 0.041 14 0.9 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:132816-133037 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~132816-133037 LRR_2 PF07723.8 g107726.t1 - 0.021 15.3 0.1 1.3 9.6 0.1 2.8 2 0 0 2 2 2 0 Leucine Rich Repeat | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:94424-95328 Augustus predicted protein sequence Tobacco scaffold2408_contigs=11~94424-95328 Spc24 PF08286.6 g44343.t1 - 0.0016 18 0.6 1.8 8.2 0 2.3 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:303993-307893 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~303993-307893 BAF PF02961.9 g9053.t1 - 0.13 12.5 0 0.14 12.4 0 1.1 1 0 0 1 1 1 0 Barrier to autointegration factor | Ref_seq=scaffold351_contigs=2, transcript_loc=scaffold351_contigs=2:25435-27311 Augustus predicted protein sequence Tobacco scaffold351_contigs=2~25435-27311 DUF4201 PF13870.1 g63311.t1 - 0.0015 18 3.4 0.0027 17.1 2.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:198857-201095 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~198857-201095 HrpB4 PF09502.5 g94138.t1 - 0.062 12.4 2.2 0.075 12.2 0.5 1.6 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB4) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:26634-27637 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~26634-27637 DUF3375 PF11855.3 g20161.t1 - 0.11 11.2 0.3 0.12 11 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:216422-217083 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~216422-217083 FabA PF07977.8 g15546.t1 - 0.62 9.5 2.6 0.89 9 1.8 1.2 1 0 0 1 1 1 0 FabA-like domain | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:567304-567648 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~567304-567648 UBN2 PF14223.1 g13709.t1 - 0.012 15.3 6.5 0.033 13.9 3 2.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold453_contigs=2, transcript_loc=scaffold453_contigs=2:4388-5538 Augustus predicted protein sequence Tobacco scaffold453_contigs=2~4388-5538 Imm33 PF15580.1 g4640.t1 - 0.11 12 0 0.16 11.4 0 1.4 1 1 0 1 1 1 0 Immunity protein 33 | Ref_seq=scaffold259_contigs=7, transcript_loc=scaffold259_contigs=7:115655-115885 Augustus predicted protein sequence Tobacco scaffold259_contigs=7~115655-115885 BMFP PF04380.8 g105636.t1 - 0.15 12.2 0.9 0.2 11.8 0 1.6 2 0 0 2 2 2 0 Membrane fusogenic activity | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:111764-112099 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~111764-112099 MerE PF05052.7 g109983.t1 - 0.016 15.1 0.3 0.27 11.2 0.1 2.2 2 0 0 2 2 2 0 MerE protein | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:93829-94535 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~93829-94535 DnaA_N PF11638.3 g75520.t1 - 0.039 13.5 0.2 0.063 12.8 0.1 1.3 1 0 0 1 1 1 0 DnaA N-terminal domain | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:130232-130612 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~130232-130612 DUF948 PF06103.6 g70686.t1 - 0.038 13.8 0.4 0.048 13.5 0.3 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:830155-830415 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~830155-830415 Het-C PF07217.6 g45098.t1 - 0.017 13.3 0.9 0.018 13.2 0.6 1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:404125-404403 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~404125-404403 Casc1 PF12366.3 g8927.t1 - 0.12 11.8 0.5 0.11 11.9 0.4 1.1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold346_contigs=1, transcript_loc=scaffold346_contigs=1:66319-66564 Augustus predicted protein sequence Tobacco scaffold346_contigs=1~66319-66564 SpoU_sub_bind PF08032.7 g121697.t1 - 0.067 13.3 0 0.12 12.5 0 1.4 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding | Ref_seq=scaffold2735_contigs=2, transcript_loc=scaffold2735_contigs=2:55810-56328 Augustus predicted protein sequence Tobacco scaffold2735_contigs=2~55810-56328 zf-RING_4 PF14570.1 g94708.t1 - 7.4 6.2 8.4 5.1 6.7 4.1 1.9 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:341449-342244 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~341449-342244 UreE_N PF02814.10 g27727.t1 - 0.044 13.3 0 0.054 13 0 1.2 1 0 0 1 1 1 0 UreE urease accessory protein, N-terminal domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:189477-189801 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~189477-189801 MFP2b PF12150.3 g70423.t1 - 0.11 11.1 0.1 0.11 11.2 0.1 1 1 0 0 1 1 1 0 Cytosolic motility protein | Ref_seq=scaffold1494_contigs=2, transcript_loc=scaffold1494_contigs=2:29633-29902 Augustus predicted protein sequence Tobacco scaffold1494_contigs=2~29633-29902 ATP-synt_D PF01813.12 g48896.t1 - 0.0077 15.8 0.2 0.0088 15.6 0.2 1 1 0 0 1 1 1 1 ATP synthase subunit D | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:574322-574573 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~574322-574573 PB1 PF00564.19 g109365.t1 - 2.4E-009 36.7 0.3 2.6E-009 36.6 0.2 1.1 1 0 0 1 1 1 1 PB1 domain | Ref_seq=scaffold2501_contigs=8, transcript_loc=scaffold2501_contigs=8:186950-188389 Augustus predicted protein sequence Tobacco scaffold2501_contigs=8~186950-188389 IPPT PF01715.12 g93015.t1 - 0.079 11.9 0 0.094 11.7 0 1.1 1 0 0 1 1 1 0 IPP transferase | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:508468-508832 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~508468-508832 Acetate_kinase PF00871.12 g104218.t1 - 0.0038 15.8 0 0.0041 15.7 0 1 1 0 0 1 1 1 1 Acetokinase family | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:151774-152094 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~151774-152094 DUF169 PF02596.10 g46453.t1 - 0.14 11.4 0.2 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised ArCR, COG2043 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:455533-455766 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~455533-455766 Fzo_mitofusin PF04799.8 g7825.t1 - 0.054 12.8 2.7 0.096 12 1.9 1.4 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold322_contigs=4, transcript_loc=scaffold322_contigs=4:23475-24592 Augustus predicted protein sequence Tobacco scaffold322_contigs=4~23475-24592 DUF3500 PF12006.3 g95725.t1 - 0.004 16.1 0 0.0047 15.9 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3500) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:177901-178356 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~177901-178356 Iron_traffic PF04362.9 g17713.t1 - 0.026 13.9 0.4 0.034 13.5 0.3 1.3 1 0 0 1 1 1 0 Bacterial Fe(2+) trafficking | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:24702-24941 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~24702-24941 Zip PF02535.17 g10298.t1 - 1.4 7.8 4 1.6 7.6 2.8 1 1 0 0 1 1 1 0 ZIP Zinc transporter | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:17441-17725 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~17441-17725 DUF601 PF04642.7 g68922.t1 - 0.033 13.5 0.2 0.052 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF601 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:140385-141973 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~140385-141973 ATHILA PF03078.10 g71614.t1 - 0.0057 15.2 0 0.007 14.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:160392-160810 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~160392-160810 DBD_Tnp_Mut PF03108.10 g68668.t1 - 0.0088 15.5 0 0.02 14.4 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:753774-754010 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~753774-754010 Sugarporin_N PF11471.3 g60187.t1 - 0.088 12.4 0.2 0.14 11.7 0.2 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:169921-170307 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~169921-170307 RVT_3 PF13456.1 g25003.t1 - 0.000042 23.2 0 0.000054 22.8 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:32619-33002 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~32619-33002 DUF2559 PF10832.3 g125043.t1 - 0.021 14.6 0 0.044 13.5 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2559) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:11082-12796 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~11082-12796 INT_SG_DDX_CT_C PF15300.1 g74244.t1 - 0.0076 15.6 0.1 0.01 15.2 0.1 1.2 1 0 0 1 1 1 1 INTS6/SAGE1/DDX26B/CT45 C-terminus | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:62404-62796 Augustus predicted protein sequence Tobacco scaffold1551_contigs=3~62404-62796 Apt1 PF10351.4 g59305.t1 - 0.022 13.6 0.1 0.024 13.5 0.1 1 1 0 0 1 1 1 0 Golgi-body localisation protein domain | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:147376-147729 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~147376-147729 Ribosomal_L15e PF00827.12 g27449.t1 - 0.0064 16 2 0.0094 15.4 1.4 1.3 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:141150-141881 Augustus predicted protein sequence Tobacco scaffold725_contigs=8~141150-141881 Fzo_mitofusin PF04799.8 g44668.t1 - 0.016 14.6 0.1 0.018 14.3 0.1 1 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:145250-145613 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~145250-145613 Actino_peptide PF14408.1 g11354.t1 - 0.0012 18.7 0.7 0.0016 18.3 0.5 1.2 1 0 0 1 1 1 1 Ribosomally synthesized peptide in actinomycetes | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:45823-46101 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~45823-46101 KN_motif PF12075.3 g23569.t1 - 0.09 12.5 5.2 7.1 6.5 0.1 3.1 3 0 0 3 3 3 0 KN motif | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:95532-95941 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~95532-95941 MYT1 PF08474.6 g34661.t1 - 0.051 13 1.7 0.062 12.7 1.2 1.1 1 0 0 1 1 1 0 Myelin transcription factor 1 | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:33190-34048 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~33190-34048 Upf2 PF04050.9 g104641.t1 - 0.014 15.1 3.4 0.02 14.6 2.3 1.1 1 0 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:254192-255061 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~254192-255061 Gal4_dimer PF03902.8 g65511.t1 - 0.071 13 0.1 0.41 10.6 0 1.9 2 0 0 2 2 2 0 Gal4-like dimerisation domain | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:70670-70879 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~70670-70879 DUF2462 PF09495.5 g72930.t1 - 0.2 12.4 2.3 0.33 11.6 1.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2462) | Ref_seq=scaffold1526_contigs=3, transcript_loc=scaffold1526_contigs=3:56567-57189 Augustus predicted protein sequence Tobacco scaffold1526_contigs=3~56567-57189 UPF0561 PF10573.4 g64576.t1 - 0.9 9.3 11.5 0.96 9.3 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold1388_contigs=6, transcript_loc=scaffold1388_contigs=6:84762-87321 Augustus predicted protein sequence Tobacco scaffold1388_contigs=6~84762-87321 ERM PF00769.14 g112313.t1 - 0.04 13.4 4.3 0.044 13.3 3 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:66681-67179 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~66681-67179 HrpB1_HrpK PF09613.5 g74111.t1 - 0.057 12.9 0 0.067 12.6 0 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:559701-560432 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~559701-560432 RnaseA PF00074.15 g94679.t1 - 0.068 13.4 0.2 0.094 13 0.1 1.1 1 0 0 1 1 1 0 Pancreatic ribonuclease | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:278214-278901 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~278214-278901 Transposase_28 PF04195.7 g118249.t1 - 0.065 12.5 0.2 0.09 12 0.1 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:198431-199320 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~198431-199320 DBD_Tnp_Mut PF03108.10 g3397.t1 - 0.0002 20.8 0 0.00036 20 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold233_contigs=2, transcript_loc=scaffold233_contigs=2:17352-18032 Augustus predicted protein sequence Tobacco scaffold233_contigs=2~17352-18032 DUF977 PF06163.6 g127164.t1 - 0.012 15.3 0.1 0.046 13.4 0 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:25703-27378 Augustus predicted protein sequence Tobacco scaffold2815_contigs=1~25703-27378 DUF4611 PF15387.1 g107357.t1 - 0.041 14 0.9 0.095 12.8 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1216788-1217402 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1216788-1217402 eIF3g PF12353.3 g56256.t1 - 0.03 14.2 0.2 0.047 13.6 0.1 1.3 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:333670-333906 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~333670-333906 AA_synth PF06684.6 g36906.t1 - 0.011 15.1 0 0.011 15.1 0 1 1 0 0 1 1 1 0 Amino acid synthesis | Ref_seq=scaffold904_contigs=3, transcript_loc=scaffold904_contigs=3:8086-8289 Augustus predicted protein sequence Tobacco scaffold904_contigs=3~8086-8289 Tymo_45kd_70kd PF03251.8 g116232.t1 - 0.0088 14.7 2 0.0088 14.7 1.4 1.1 1 0 0 1 1 1 1 Tymovirus 45/70Kd protein | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:229467-229709 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~229467-229709 ATHILA PF03078.10 g121069.t1 - 0.0081 14.7 0 0.0081 14.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:316994-317218 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~316994-317218 TraQ PF09679.5 g60951.t1 - 0.17 11.8 1 0.43 10.5 0.7 1.6 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) | Ref_seq=scaffold1324_contigs=9, transcript_loc=scaffold1324_contigs=9:175511-175951 Augustus predicted protein sequence Tobacco scaffold1324_contigs=9~175511-175951 IL5 PF02025.10 g114286.t1 - 0.08 12.9 0 0.1 12.6 0 1.1 1 0 0 1 1 1 0 Interleukin 5 | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:44951-45226 Augustus predicted protein sequence Tobacco scaffold2644_contigs=21~44951-45226 zf-CCHC PF00098.18 g16242.t1 - 0.0047 16.7 0.6 0.0079 16 0.4 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:179215-179853 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~179215-179853 DUF1090 PF06476.7 g92713.t1 - 0.034 13.8 1.6 0.042 13.5 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:351854-352637 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~351854-352637 Trypan_PARP PF05887.6 g50585.t1 - 0.0019 18 4.7 0.0019 18 3.3 1.3 1 1 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:9812-10093 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~9812-10093 RVT_3 PF13456.1 g22656.t1 - 0.000015 24.7 0 0.000017 24.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:74179-74442 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~74179-74442 DUF4643 PF15485.1 g14403.t1 - 0.083 12.3 0.1 0.086 12.3 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4643) | Ref_seq=scaffold473_contigs=14, transcript_loc=scaffold473_contigs=14:399351-400349 Augustus predicted protein sequence Tobacco scaffold473_contigs=14~399351-400349 Trypan_PARP PF05887.6 g74046.t1 - 0.33 10.7 8.8 0.35 10.6 6.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:446324-446545 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~446324-446545 Phage_tail_2 PF06199.6 g3290.t1 - 0.13 12.2 0.6 0.16 12 0.5 1.1 1 0 0 1 1 1 0 Phage major tail protein 2 | Ref_seq=scaffold228_contigs=4, transcript_loc=scaffold228_contigs=4:204487-204819 Augustus predicted protein sequence Tobacco scaffold228_contigs=4~204487-204819 U-box PF04564.10 g8555.t1 - 0.1 12.5 0 0.14 12.1 0 1.2 1 0 0 1 1 1 0 U-box domain | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:192030-192323 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~192030-192323 DUF4239 PF14023.1 g106191.t1 - 0.099 11.9 0 0.11 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:83989-85679 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~83989-85679 Rad50_zn_hook PF04423.9 g89416.t1 - 0.0015 17.9 0.8 0.0015 17.9 0.5 3 4 0 0 4 4 4 1 Rad50 zinc hook motif | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:91335-92008 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~91335-92008 NTP_transf_2 PF01909.18 g124544.t1 - 0.09 13.1 3.1 16 5.8 0 3.7 1 1 3 4 4 4 0 Nucleotidyltransferase domain | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:388854-389099 Augustus predicted protein sequence Tobacco scaffold2762_contigs=5~388854-389099 Gag_spuma PF03276.9 g83551.t1 - 0.074 11.3 0.5 0.077 11.3 0.3 1 1 0 0 1 1 1 0 Spumavirus gag protein | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:73198-73506 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~73198-73506 BNIP2 PF12496.3 g25956.t1 - 0.17 12 1.3 0.2 11.8 0.9 1.3 1 0 0 1 1 1 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:164526-166910 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~164526-166910 Consortin_C PF15281.1 g102189.t1 - 0.055 12.9 0.1 0.1 12 0 1.5 2 0 0 2 2 2 0 Consortin C-terminus | Ref_seq=scaffold2234_contigs=2, transcript_loc=scaffold2234_contigs=2:7906-8547 Augustus predicted protein sequence Tobacco scaffold2234_contigs=2~7906-8547 Trefoil PF00088.13 g59630.t1 - 0.16 11.6 2.6 0.17 11.5 1 1.7 2 0 0 2 2 2 0 Trefoil (P-type) domain | Ref_seq=scaffold1296_contigs=2, transcript_loc=scaffold1296_contigs=2:21388-21678 Augustus predicted protein sequence Tobacco scaffold1296_contigs=2~21388-21678 14-3-3 PF00244.15 g79094.t1 - 0.0054 15.8 0 0.3 10.1 0 2 2 0 0 2 2 2 2 14-3-3 protein | Ref_seq=scaffold1685_contigs=26, transcript_loc=scaffold1685_contigs=26:483297-484539 Augustus predicted protein sequence Tobacco scaffold1685_contigs=26~483297-484539 SR-25 PF10500.4 g125355.t1 - 0.24 10.8 12.1 0.27 10.6 8.4 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:89759-90525 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~89759-90525 DUF940 PF06082.6 g29995.t1 - 0.015 13.8 0.5 0.019 13.5 0.4 1 1 0 0 1 1 1 0 Bacterial putative lipoprotein (DUF940) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:179185-179935 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~179185-179935 Fanconi_A PF03511.9 g93177.t1 - 0.095 12.4 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Fanconi anaemia group A protein | Ref_seq=scaffold2009_contigs=4, transcript_loc=scaffold2009_contigs=4:25552-26019 Augustus predicted protein sequence Tobacco scaffold2009_contigs=4~25552-26019 DUF1979 PF09322.5 g48201.t1 - 0.029 14 0.1 0.063 12.9 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:524478-527666 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~524478-527666 Acetyltransf_6 PF13480.1 g35556.t1 - 0.05 13.5 0 0.059 13.3 0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:70847-71474 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~70847-71474 DUF755 PF05501.6 g33292.t1 - 0.081 12.9 1.2 0.097 12.7 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold829_contigs=1, transcript_loc=scaffold829_contigs=1:19587-19982 Augustus predicted protein sequence Tobacco scaffold829_contigs=1~19587-19982 Synaptobrevin PF00957.16 g626.t1 - 0.056 13 1.2 0.075 12.6 0.8 1.2 1 0 0 1 1 1 0 Synaptobrevin | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:45130-45387 Augustus predicted protein sequence Tobacco scaffold36_contigs=4~45130-45387 DUF1192 PF06698.6 g80280.t1 - 0.00087 19 0.3 0.016 15 0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1192) | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:53464-53769 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~53464-53769 DUF2616 PF11077.3 g29557.t1 - 0.0024 17.4 0.3 0.003 17 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2616) | Ref_seq=scaffold761_contigs=1, transcript_loc=scaffold761_contigs=1:7154-7914 Augustus predicted protein sequence Tobacco scaffold761_contigs=1~7154-7914 Transposase_28 PF04195.7 g46021.t1 - 0.014 14.7 0 0.014 14.7 0 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:321986-322539 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~321986-322539 Ribosomal_L39 PF00832.15 g2054.t1 - 0.092 12.2 0 0.12 11.8 0 1.1 1 0 0 1 1 1 0 Ribosomal L39 protein | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:73367-73573 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~73367-73573 CTD PF12815.2 g83876.t1 - 0.0048 17.3 0.1 0.0054 17.1 0.1 1.1 1 0 0 1 1 1 1 Spt5 C-terminal nonapeptide repeat binding Spt4 | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:94401-94872 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~94401-94872 DUF962 PF06127.6 g104976.t1 - 0.061 13.2 0.1 0.11 12.4 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF962) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:24660-26150 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~24660-26150 DBD_Tnp_Mut PF03108.10 g45682.t1 - 0.000025 23.7 0 0.000037 23.2 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:371340-372026 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~371340-372026 Stm1_N PF09598.5 g76161.t1 - 0.18 12.5 1.3 0.19 12.4 0.2 1.5 2 0 0 2 2 2 0 Stm1 | Ref_seq=scaffold1609_contigs=5, transcript_loc=scaffold1609_contigs=5:126508-126950 Augustus predicted protein sequence Tobacco scaffold1609_contigs=5~126508-126950 DUF4033 PF13225.1 g50560.t1 - 0.089 12.4 0 0.098 12.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4033) | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:337948-338148 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~337948-338148 YXWGXW PF12779.2 g37812.t1 - 0.15 12 4.6 7.2 6.6 0.7 2.7 2 0 0 2 2 2 0 YXWGXW repeat (2 copies) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:63534-64625 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~63534-64625 DBD_Tnp_Mut PF03108.10 g46210.t1 - 0.000000015 34.1 2.7 0.000000038 32.7 1.9 1.7 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:78874-79392 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~78874-79392 Peptidase_C48 PF02902.14 g86300.t1 - 0.000019 24.3 0.4 0.000022 24.1 0.3 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:1310-2069 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~1310-2069 Ribosomal_60s PF00428.14 g74240.t1 - 0.061 13.7 5 0.071 13.5 3.4 1.1 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:54257-54460 Augustus predicted protein sequence Tobacco scaffold1551_contigs=3~54257-54460 DUF4224 PF13986.1 g108307.t1 - 0.00075 18.9 0 1.6 8.3 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4224) | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:1323513-1327032 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~1323513-1327032 zf-CCHC PF00098.18 g95829.t1 - 0.000094 22.1 0.7 0.00019 21.1 0.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:55058-56092 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~55058-56092 Apolipoprotein PF01442.13 g48751.t1 - 0.014 14.8 1.6 0.014 14.8 1.1 1.5 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:278640-279597 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~278640-279597 DUF848 PF05852.6 g74359.t1 - 0.016 15 0.4 0.038 13.8 0 1.7 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:40253-40573 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~40253-40573 VIGSSK PF14773.1 g122892.t1 - 0.047 13.6 0.5 0.13 12.2 0.1 2 2 0 0 2 2 2 0 Helicase-associated putative binding domain, C-terminal | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:60990-61490 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~60990-61490 ATHILA PF03078.10 g92711.t1 - 0.0067 15 0 0.0071 14.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:348183-348488 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~348183-348488 DUF972 PF06156.8 g7344.t1 - 0.035 14.4 2.8 5.5 7.3 1.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold312_contigs=3, transcript_loc=scaffold312_contigs=3:51316-52827 Augustus predicted protein sequence Tobacco scaffold312_contigs=3~51316-52827 RR_TM4-6 PF06459.7 g25071.t1 - 7.1 6.4 10.4 9.6 6 7.2 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:93072-93455 Augustus predicted protein sequence Tobacco scaffold686_contigs=3~93072-93455 DUF1510 PF07423.6 g98181.t1 - 0.038 13.3 4.3 0.049 12.9 3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold2154_contigs=6, transcript_loc=scaffold2154_contigs=6:95369-96319 Augustus predicted protein sequence Tobacco scaffold2154_contigs=6~95369-96319 Sterol_MT_C PF08498.5 g60634.t1 - 0.12 12.3 0 0.18 11.7 0 1.3 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal | Ref_seq=scaffold1311_contigs=22, transcript_loc=scaffold1311_contigs=22:114293-114667 Augustus predicted protein sequence Tobacco scaffold1311_contigs=22~114293-114667 ATHILA PF03078.10 g81063.t1 - 0.0083 14.7 0 0.011 14.3 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:138052-138714 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~138052-138714 DUF2505 PF10698.4 g99140.t1 - 0.14 11.6 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2505) | Ref_seq=scaffold2170_contigs=8, transcript_loc=scaffold2170_contigs=8:129528-129863 Augustus predicted protein sequence Tobacco scaffold2170_contigs=8~129528-129863 Retrotrans_gag PF03732.12 g120117.t1 - 0.023 14.7 0.1 0.029 14.4 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:69899-70264 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~69899-70264 Peptidase_S31 PF05578.7 g45624.t1 - 0.0079 15.4 0 0.0091 15.2 0 1.1 1 0 0 1 1 1 1 Pestivirus NS3 polyprotein peptidase S31 | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:231312-231512 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~231312-231512 Somatostatin PF03002.10 g1937.t1 - 0.065 12.8 0.6 0.11 12.1 0.4 1.3 1 0 0 1 1 1 0 Somatostatin/Cortistatin family | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:43392-43964 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~43392-43964 Nop14 PF04147.7 g11699.t1 - 0.0011 17 0.1 0.0011 17 0.1 1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:85505-86507 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~85505-86507 DUF2475 PF10629.4 g2503.t1 - 0.015 15.4 1.7 0.75 10 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2475) | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:141695-142447 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~141695-142447 Nepo_coat PF03391.10 g94113.t1 - 2.5 7.3 6.5 25 4 0.2 3 2 1 1 3 3 3 0 Nepovirus coat protein, central domain | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:327166-327571 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~327166-327571 FTCD_C PF04961.7 g29600.t1 - 0.11 11.9 0.4 0.12 11.8 0.3 1.2 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase | Ref_seq=scaffold762_contigs=4, transcript_loc=scaffold762_contigs=4:90100-92180 Augustus predicted protein sequence Tobacco scaffold762_contigs=4~90100-92180 DUF1425 PF07233.7 g119647.t1 - 0.13 11.8 0 0.2 11.2 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1425) | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:152354-153724 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~152354-153724 MoCo_carrier PF12694.2 g123122.t1 - 0.028 13.8 0 0.032 13.6 0 1 1 0 0 1 1 1 0 Putative molybdenum carrier | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:30129-30570 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~30129-30570 QueF PF14489.1 g118212.t1 - 0.074 13 0 0.084 12.8 0 1.1 1 0 0 1 1 1 0 QueF-like protein | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:104710-105173 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~104710-105173 Parvo_coat PF00740.13 g40386.t1 - 0.1 11.5 0.1 0.13 11.1 0 1.1 1 0 0 1 1 1 0 Parvovirus coat protein VP2 | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:298812-300498 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~298812-300498 Anophelin PF10731.4 g125313.t1 - 0.83 9.7 5.1 1.5 9 3.5 1.3 1 0 0 1 1 1 0 Thrombin inhibitor from mosquito | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:10304-10998 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~10304-10998 MAP65_ASE1 PF03999.7 g83173.t1 - 0.68 8.4 4.3 0.89 8 3 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:250035-250676 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~250035-250676 Minor_capsid_3 PF12691.2 g83330.t1 - 0.12 12 0 0.13 11.9 0 1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold1785_contigs=3, transcript_loc=scaffold1785_contigs=3:330-566 Augustus predicted protein sequence Tobacco scaffold1785_contigs=3~330-566 Upf2 PF04050.9 g100043.t1 - 0.0068 16.1 0.8 0.0075 16 0.6 1.1 1 0 0 1 1 1 1 Up-frameshift suppressor 2 | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:378626-379060 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~378626-379060 Josephin PF02099.12 g112174.t1 - 0.084 12.4 0.1 0.089 12.4 0 1.1 1 0 0 1 1 1 0 Josephin | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:152020-152256 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~152020-152256 zf-rbx1 PF12678.2 g52163.t1 - 0.1 12.7 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 RING-H2 zinc finger | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:587907-588206 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~587907-588206 DUF35_N PF12172.3 g127029.t1 - 0.11 12.4 0.8 6.7 6.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:4516-6378 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~4516-6378 DUF605 PF04652.11 g57576.t1 - 2.5 7.3 11.3 3.5 6.9 7.8 1.2 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:182902-183926 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~182902-183926 Mito_fiss_reg PF05308.6 g10167.t1 - 2.4 7.4 5.9 2.4 7.4 4.1 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:261296-261619 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~261296-261619 HDAC4_Gln PF12203.3 g55612.t1 - 0.52 10.2 6 0.74 9.7 4.2 1.2 1 0 0 1 1 1 0 Glutamine rich N terminal domain of histone deacetylase 4 | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:67132-67627 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~67132-67627 DUF2090 PF09863.4 g781.t1 - 0.033 13 0 0.034 13 0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2090) | Ref_seq=scaffold52_contigs=2, transcript_loc=scaffold52_contigs=2:24160-25009 Augustus predicted protein sequence Tobacco scaffold52_contigs=2~24160-25009 PPR_2 PF13041.1 g33960.t1 - 0.000092 22.3 0 0.00013 21.8 0 1.2 1 0 0 1 1 1 1 PPR repeat family | Ref_seq=scaffold836_contigs=5, transcript_loc=scaffold836_contigs=5:59876-60307 Augustus predicted protein sequence Tobacco scaffold836_contigs=5~59876-60307 COX7C PF02935.11 g68259.t1 - 0.14 12 0 0.22 11.3 0 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:42332-42535 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~42332-42535 TrbC_Ftype PF09673.5 g98852.t1 - 0.015 14.8 0 0.015 14.8 0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:300917-301711 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~300917-301711 NnrS PF05940.7 g46685.t1 - 0.09 11.6 0.5 6 5.6 0 2.1 2 0 0 2 2 2 0 NnrS protein | Ref_seq=scaffold1075_contigs=8, transcript_loc=scaffold1075_contigs=8:32430-33209 Augustus predicted protein sequence Tobacco scaffold1075_contigs=8~32430-33209 FAM178 PF14816.1 g72201.t1 - 0.042 12.5 0.1 0.045 12.4 0 1 1 0 0 1 1 1 0 Family of unknown function, FAM178 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:500233-500601 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~500233-500601 BLVR PF06375.6 g3901.t1 - 0.041 13.7 6.1 0.04 13.7 4.2 1.2 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold247_contigs=8, transcript_loc=scaffold247_contigs=8:21875-22201 Augustus predicted protein sequence Tobacco scaffold247_contigs=8~21875-22201 RED_C PF07807.6 g92363.t1 - 0.093 12.9 2.6 0.41 10.8 0 2.7 1 1 1 3 3 3 0 RED-like protein C-terminal region | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:394247-395206 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~394247-395206 Phage_integrase PF00589.17 g129855.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:3635-3979 Augustus predicted protein sequence Tobacco scaffold3123_contigs=1~3635-3979 PmrD PF11183.3 g37196.t1 - 0.041 13.6 0.1 0.06 13.1 0 1.3 1 0 0 1 1 1 0 Polymyxin resistance protein PmrD | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:21276-21599 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~21276-21599 ATHILA PF03078.10 g101212.t1 - 0.0012 17.5 0 0.0012 17.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2209_contigs=9, transcript_loc=scaffold2209_contigs=9:29557-29838 Augustus predicted protein sequence Tobacco scaffold2209_contigs=9~29557-29838 Flagellar_rod PF05149.7 g41458.t1 - 0.00035 19.8 2.1 0.00046 19.4 1.4 1.1 1 0 0 1 1 1 1 Paraflagellar rod protein | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:356127-356786 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~356127-356786 ELO PF01151.13 g51881.t1 - 0.0078 15.5 0 0.0086 15.4 0 1.1 1 0 0 1 1 1 1 GNS1/SUR4 family | Ref_seq=scaffold1172_contigs=7, transcript_loc=scaffold1172_contigs=7:53893-55398 Augustus predicted protein sequence Tobacco scaffold1172_contigs=7~53893-55398 DUF1489 PF07370.6 g98520.t1 - 0.079 12.4 0 0.092 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1489) | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:60710-60946 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~60710-60946 PH PF00169.24 g76664.t1 - 0.092 12.9 0.1 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 PH domain | Ref_seq=scaffold1618_contigs=6, transcript_loc=scaffold1618_contigs=6:30111-30422 Augustus predicted protein sequence Tobacco scaffold1618_contigs=6~30111-30422 CENP-R PF06729.7 g43414.t1 - 0.42 10.2 2.7 1.3 8.6 1.8 1.8 1 1 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:182806-185258 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~182806-185258 CDRT4 PF15213.1 g102095.t1 - 0.055 13.5 0.5 0.067 13.2 0.3 1.2 1 0 0 1 1 1 0 CMT1A duplicated region transcript 4 protein | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:70362-70972 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~70362-70972 NAD_binding_9 PF13454.1 g30215.t1 - 0.011 15.5 0 0.013 15.3 0 1.1 1 0 0 1 1 1 0 FAD-NAD(P)-binding | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:49571-50171 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~49571-50171 FlgN PF05130.7 g49001.t1 - 0.1 12.8 0.1 0.14 12.4 0 1.1 1 0 0 1 1 1 0 FlgN protein | Ref_seq=scaffold1111_contigs=7, transcript_loc=scaffold1111_contigs=7:110928-112490 Augustus predicted protein sequence Tobacco scaffold1111_contigs=7~110928-112490 DBD_Tnp_Mut PF03108.10 g17625.t1 - 0.0051 16.3 0.1 0.0065 16 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold532_contigs=7, transcript_loc=scaffold532_contigs=7:91215-91481 Augustus predicted protein sequence Tobacco scaffold532_contigs=7~91215-91481 Peptidase_C74 PF12387.3 g119672.t1 - 0.14 11.3 0.8 0.24 10.5 0 1.6 2 0 0 2 2 2 0 Pestivirus NS2 peptidase | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:200806-201452 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~200806-201452 HDAC4_Gln PF12203.3 g9842.t1 - 7.7 6.5 8.5 13 5.7 3.4 2.4 2 0 0 2 2 2 0 Glutamine rich N terminal domain of histone deacetylase 4 | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:171936-173027 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~171936-173027 GRP PF07172.6 g109140.t1 - 1.3E-010 41.6 43.1 1.3E-010 41.6 29.9 9.3 1 1 2 3 3 3 1 Glycine rich protein family | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:101853-103432 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~101853-103432 DUF4170 PF13773.1 g26861.t1 - 0.024 14.4 0 0.045 13.6 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:421817-422311 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~421817-422311 FH2 PF02181.18 g9691.t1 - 0.007 15.2 0.1 0.008 15.1 0.1 1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:101073-101441 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~101073-101441 Sigma70_ner PF04546.8 g74481.t1 - 0.0055 16.3 1 0.006 16.2 0.7 1.1 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:371073-371324 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~371073-371324 Tom5 PF10642.4 g15910.t1 - 0.07 12.7 1.1 0.12 11.9 0.8 1.4 1 0 0 1 1 1 0 Mitochondrial import receptor subunit or translocase | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:41543-42367 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~41543-42367 Daxx PF03344.10 g113779.t1 - 0.73 8.2 17.9 0.1 11 9 1.8 2 0 0 2 2 2 0 Daxx Family | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:406276-410508 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~406276-410508 Plug_translocon PF10559.4 g74203.t1 - 0.028 13.9 0.4 2.1 7.8 0 2.9 2 0 0 2 2 2 0 Plug domain of Sec61p | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:766222-768867 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~766222-768867 DUF605 PF04652.11 g93198.t1 - 0.56 9.5 16.6 0.64 9.3 11.5 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:51628-52534 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~51628-52534 Phospho_p8 PF10195.4 g30643.t1 - 0.19 11.6 0.4 26 4.7 0 2.9 2 1 1 3 3 3 0 DNA-binding nuclear phosphoprotein p8 | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:83885-84766 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~83885-84766 DUF4219 PF13961.1 g87243.t1 - 0.0044 16.3 0.3 0.015 14.6 0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:90203-90406 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~90203-90406 DUF2722 PF10846.3 g77871.t1 - 0.015 14.3 2 0.015 14.3 1.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2722) | Ref_seq=scaffold1638_contigs=15, transcript_loc=scaffold1638_contigs=15:398261-398719 Augustus predicted protein sequence Tobacco scaffold1638_contigs=15~398261-398719 Stn1_C PF12659.2 g67333.t1 - 0.012 15.4 0.1 0.015 15 0.1 1.3 1 0 0 1 1 1 0 Telomere capping C-terminal wHTH | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:61306-62290 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~61306-62290 HILPDA PF15220.1 g61445.t1 - 0.093 12.7 0.1 0.31 11 0 1.7 2 0 0 2 2 2 0 Hypoxia-inducible lipid droplet-associated | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:149757-150940 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~149757-150940 zf-CCHC PF00098.18 g38076.t1 - 0.0048 16.7 0.1 0.0089 15.9 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:140327-140941 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~140327-140941 SAGA-Tad1 PF12767.2 g119849.t1 - 0.024 14.3 0.3 0.028 14 0.2 1.1 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:341123-341440 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~341123-341440 DUF724 PF05266.9 g42152.t1 - 0.2 11.2 3.9 0.21 11.2 2.7 1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:163699-163920 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~163699-163920 UBN2 PF14223.1 g62.t1 - 0.00059 19.6 0 0.0007 19.3 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold3_contigs=2, transcript_loc=scaffold3_contigs=2:16809-17096 Augustus predicted protein sequence Tobacco scaffold3_contigs=2~16809-17096 DUF3975 PF13126.1 g33533.t1 - 0.12 12.5 0.3 0.21 11.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3975) | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:9334-9978 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~9334-9978 DUF1344 PF07076.6 g24151.t1 - 0.24 10.9 1.5 5.8 6.5 0.1 3 2 1 1 3 3 3 0 Protein of unknown function (DUF1344) | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:23300-24441 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~23300-24441 GHL15 PF14885.1 g87252.t1 - 0.66 10.2 3.4 1.2 9.3 2.3 1.5 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:130143-132472 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~130143-132472 DUF755 PF05501.6 g5817.t1 - 2.3 8.3 11.5 28 4.8 6.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF755) | Ref_seq=scaffold283_contigs=2, transcript_loc=scaffold283_contigs=2:25836-26594 Augustus predicted protein sequence Tobacco scaffold283_contigs=2~25836-26594 MYT1 PF08474.6 g51141.t1 - 0.047 13.1 0.1 0.051 13 0 1.1 1 0 0 1 1 1 0 Myelin transcription factor 1 | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:22893-23616 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~22893-23616 ATHILA PF03078.10 g4290.t1 - 0.1 11.1 0 0.12 10.9 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:38093-38557 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~38093-38557 DUF3524 PF12038.3 g62181.t1 - 0.022 14.3 0.3 0.053 13 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3524) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:128970-129407 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~128970-129407 Bac_globin PF01152.16 g62228.t1 - 0.03 14.3 0.8 0.11 12.5 0 1.9 2 0 0 2 2 2 0 Bacterial-like globin | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:236956-237603 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~236956-237603 DUF4172 PF13776.1 g62213.t1 - 0.017 15.2 0.1 0.028 14.4 0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:195332-195637 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~195332-195637 AgrD PF05931.6 g83208.t1 - 0.0045 16.5 0 0.07 12.7 0 2.3 2 0 0 2 2 2 1 Staphylococcal AgrD protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:356275-356745 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~356275-356745 TrfA PF07042.6 g100746.t1 - 0.076 11.8 0 0.085 11.6 0 1.1 1 0 0 1 1 1 0 TrfA protein | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:110108-111372 Augustus predicted protein sequence Tobacco scaffold2204_contigs=7~110108-111372 Caprin-1_C PF12287.3 g42978.t1 - 0.01 15.2 0.1 0.37 10.1 0 2 1 1 1 2 2 2 0 Cytoplasmic activation/proliferation-associated protein-1 C term | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:89290-90047 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~89290-90047 DUF2694 PF10904.3 g64256.t1 - 0.03 14.3 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:295487-296359 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~295487-296359 Mesothelin PF06060.7 g48802.t1 - 0.0059 14.7 0 0.0065 14.5 0 1.1 1 0 0 1 1 1 1 Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:396030-397209 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~396030-397209 zf-TRAF PF02176.13 g126369.t1 - 0.047 14 0.1 0.087 13.2 0.1 1.7 1 1 0 1 1 1 0 TRAF-type zinc finger | Ref_seq=scaffold2793_contigs=1, transcript_loc=scaffold2793_contigs=1:70321-70605 Augustus predicted protein sequence Tobacco scaffold2793_contigs=1~70321-70605 T4_Gp59_C PF08994.5 g59229.t1 - 0.066 13.3 1.4 0.92 9.6 0.1 2 1 1 1 2 2 2 0 T4 gene Gp59 loader of gp41 DNA helicase C-term | Ref_seq=scaffold1285_contigs=4, transcript_loc=scaffold1285_contigs=4:14061-14676 Augustus predicted protein sequence Tobacco scaffold1285_contigs=4~14061-14676 tRNA-synt_1f PF01921.13 g46877.t1 - 0.005 15.5 0.1 0.006 15.3 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:7285-9191 Augustus predicted protein sequence Tobacco scaffold1081_contigs=4~7285-9191 CT47 PF15623.1 g79753.t1 - 0.027 14.2 0 0.031 14 0 1 1 0 0 1 1 1 0 Cancer/testis gene family 47 | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:73172-73423 Augustus predicted protein sequence Tobacco scaffold1702_contigs=7~73172-73423 Ribosomal_S14 PF00253.16 g46220.t1 - 0.63 9.4 6.3 0.13 11.6 2 1.7 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e | Ref_seq=scaffold1061_contigs=9, transcript_loc=scaffold1061_contigs=9:121674-121904 Augustus predicted protein sequence Tobacco scaffold1061_contigs=9~121674-121904 Thioesterase PF00975.15 g71986.t1 - 0.073 13.2 0.2 0.085 13 0.1 1.1 1 0 0 1 1 1 0 Thioesterase domain | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:38882-39461 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~38882-39461 PTPS PF01242.14 g104965.t1 - 0.03 13.9 0 1.1 8.9 0 2.1 2 0 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:11491-12445 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~11491-12445 PGBA_C PF15437.1 g75037.t1 - 0.19 11.8 0.1 0.19 11.8 0.1 1.8 2 0 0 2 2 2 0 Plasminogen-binding protein pgbA C-terminal | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:359511-360674 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~359511-360674 Methyltransf_31 PF13847.1 g7219.t1 - 0.00037 20.1 0 0.00048 19.7 0 1.1 1 0 0 1 1 1 1 Methyltransferase domain | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:138473-139263 Augustus predicted protein sequence Tobacco scaffold309_contigs=4~138473-139263 Apis_Csd PF11671.3 g23676.t1 - 0.54 10 5.3 0.36 10.6 2.8 1.4 2 0 0 2 2 2 0 Complementary sex determiner protein | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:381764-382724 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~381764-382724 DUF2158 PF09926.4 g52334.t1 - 0.13 11.6 0 0.18 11.2 0 1.2 1 0 0 1 1 1 0 Uncharacterized small protein (DUF2158) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:21409-21756 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~21409-21756 DUF4398 PF14346.1 g31078.t1 - 0.017 15.1 0.5 0.025 14.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) | Ref_seq=scaffold785_contigs=8, transcript_loc=scaffold785_contigs=8:60479-60938 Augustus predicted protein sequence Tobacco scaffold785_contigs=8~60479-60938 Totivirus_coat PF05518.6 g122750.t1 - 0.24 9.2 3.4 0.23 9.2 2.3 1 1 0 0 1 1 1 0 Totivirus coat protein | Ref_seq=scaffold2748_contigs=28, transcript_loc=scaffold2748_contigs=28:378570-378842 Augustus predicted protein sequence Tobacco scaffold2748_contigs=28~378570-378842 SurE PF01975.12 g62189.t1 - 0.1 11.8 0.7 0.11 11.7 0.5 1.1 1 0 0 1 1 1 0 Survival protein SurE | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:143364-143738 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~143364-143738 DUF4083 PF13314.1 g123801.t1 - 0.091 12.6 7.2 0.16 11.8 5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:610356-611874 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~610356-611874 Myc_N PF01056.13 g110013.t1 - 0.0094 15.1 1.3 0.011 14.9 0.9 1.1 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold2522_contigs=11, transcript_loc=scaffold2522_contigs=11:169777-170172 Augustus predicted protein sequence Tobacco scaffold2522_contigs=11~169777-170172 zf-CCHC_4 PF14392.1 g63632.t1 - 0.055 13.1 0.8 0.082 12.5 0.5 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1378_contigs=1, transcript_loc=scaffold1378_contigs=1:15129-15347 Augustus predicted protein sequence Tobacco scaffold1378_contigs=1~15129-15347 Nop53 PF07767.6 g4449.t1 - 0.048 12.6 0.6 0.058 12.3 0.4 1 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:240982-241914 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~240982-241914 zf-Dof PF02701.10 g114220.t1 - 0.18 11.7 0.8 0.36 10.7 0.1 1.8 1 1 1 2 2 2 0 Dof domain, zinc finger | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:286550-286765 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~286550-286765 DUF3778 PF12620.3 g111273.t1 - 0.061 12.8 0.5 10 5.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3778) | Ref_seq=scaffold2588_contigs=37, transcript_loc=scaffold2588_contigs=37:11224-11688 Augustus predicted protein sequence Tobacco scaffold2588_contigs=37~11224-11688 Transposase_28 PF04195.7 g53479.t1 - 0.22 10.8 2.1 0.31 10.2 1.2 1.5 1 1 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:411261-412017 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~411261-412017 Nop14 PF04147.7 g72032.t1 - 0.0075 14.2 11.4 0.0084 14 7.9 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:140487-142534 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~140487-142534 RasGAP_C PF03836.10 g69127.t1 - 0.0063 16.2 0.5 0.009 15.6 0.3 1.1 1 0 0 1 1 1 1 RasGAP C-terminus | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:517860-518324 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~517860-518324 RdgC PF04381.7 g42410.t1 - 0.038 12.9 0 0.062 12.2 0 1.3 1 0 0 1 1 1 0 Putative exonuclease, RdgC | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:233771-234683 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~233771-234683 FA_desaturase PF00487.19 g102628.t1 - 0.055 12.8 0.1 0.065 12.6 0 1 1 0 0 1 1 1 0 Fatty acid desaturase | Ref_seq=scaffold2259_contigs=5, transcript_loc=scaffold2259_contigs=5:136420-137024 Augustus predicted protein sequence Tobacco scaffold2259_contigs=5~136420-137024 Asp-B-Hydro_N PF05279.6 g59728.t1 - 0.31 10.8 1.4 0.34 10.7 1 1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:79620-80081 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~79620-80081 GRDA PF04723.9 g78817.t1 - 0.035 13.8 0.3 0.048 13.3 0.2 1.1 1 0 0 1 1 1 0 Glycine reductase complex selenoprotein A | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:22924-23518 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~22924-23518 KfrA_N PF11740.3 g37902.t1 - 0.031 14.7 0.8 0.047 14.1 0.5 1.3 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:214794-215141 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~214794-215141 DPM3 PF08285.6 g83098.t1 - 0.13 12 0.1 0.67 9.8 0 1.9 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:93137-93442 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~93137-93442 DUF930 PF06059.7 g83396.t1 - 0.17 12.1 1.7 0.39 10.9 1.2 1.6 1 1 0 1 1 1 0 Domain of Unknown Function (DUF930) | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:33082-33725 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~33082-33725 OCIA PF07051.6 g6839.t1 - 0.085 12.2 0 0.22 10.9 0 1.6 1 1 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) | Ref_seq=scaffold305_contigs=7, transcript_loc=scaffold305_contigs=7:47471-47752 Augustus predicted protein sequence Tobacco scaffold305_contigs=7~47471-47752 DUF3353 PF11833.3 g75870.t1 - 0.036 13.5 0.1 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:47292-47977 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~47292-47977 DUF1985 PF09331.6 g27799.t1 - 0.00000043 29.8 0 0.00000043 29.8 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:325459-325746 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~325459-325746 RWP-RK PF02042.10 g128065.t1 - 0.15 11.9 0.2 0.31 10.9 0.1 1.5 1 1 0 1 1 1 0 RWP-RK domain | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:22984-23863 Augustus predicted protein sequence Tobacco scaffold2848_contigs=1~22984-23863 CASP_C PF08172.7 g118673.t1 - 0.13 11.3 0 0.14 11.1 0 1.1 1 0 0 1 1 1 0 CASP C terminal | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:470710-470994 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~470710-470994 DUF3015 PF11220.3 g64501.t1 - 0.07 12.7 0 0.12 12 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3015) | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:244028-245964 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~244028-245964 TrbE PF11100.3 g87308.t1 - 0.0065 16.3 0 0.0082 15.9 0 1.1 1 0 0 1 1 1 1 Conjugal transfer protein TrbE | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:282187-282621 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~282187-282621 Paf1 PF03985.8 g93522.t1 - 0.023 13.4 16.1 0.023 13.4 11.1 1 1 0 0 1 1 1 0 Paf1 | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:35532-35938 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~35532-35938 Tegument_dsDNA PF12818.2 g74667.t1 - 0.075 11.8 0.1 0.085 11.7 0.1 1.1 1 0 0 1 1 1 0 dsDNA viral tegument protein | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:46159-47648 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~46159-47648 Hanta_G1 PF01567.11 g25316.t1 - 0.072 11.3 0.1 0.079 11.2 0 1.1 1 0 0 1 1 1 0 Hantavirus glycoprotein G1 | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:63807-64612 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~63807-64612 F-box PF00646.28 g37134.t1 - 0.0012 18.3 4.4 0.58 9.8 0.1 2.5 2 0 0 2 2 2 2 F-box domain | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:222335-223839 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~222335-223839 zf-CCHC PF00098.18 g28898.t1 - 0.00011 22 0.7 0.00025 20.8 0.5 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:571949-573223 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~571949-573223 CAP_N PF01213.14 g115853.t1 - 0.61 9.3 6.8 0.79 8.9 4.7 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:95346-95741 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~95346-95741 Sigma70_r4_2 PF08281.7 g20600.t1 - 0.0094 15.3 0.1 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:526538-527880 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~526538-527880 zf-CCHC PF00098.18 g119954.t1 - 0.0079 16 0.6 0.0079 16 0.4 1.5 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:109639-109965 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~109639-109965 DUF972 PF06156.8 g114372.t1 - 0.0042 17.4 0.5 0.0062 16.8 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF972) | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:31313-31579 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~31313-31579 ATHILA PF03078.10 g70340.t1 - 0.00081 18 0.1 0.00093 17.8 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:315770-316236 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~315770-316236 DUF1985 PF09331.6 g2034.t1 - 0.0000042 26.6 0 0.0000071 25.8 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:34340-38202 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~34340-38202 DUF3670 PF12419.3 g118530.t1 - 0.061 12.7 0 0.1 12 0 1.3 1 0 0 1 1 1 0 SNF2 Helicase protein | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:127105-127815 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~127105-127815 PKI PF02827.11 g11270.t1 - 0.053 13.6 0 0.07 13.2 0 1.2 1 0 0 1 1 1 0 cAMP-dependent protein kinase inhibitor | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:85020-85253 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~85020-85253 Vir_act_alpha_C PF10400.4 g121048.t1 - 0.095 13 0.1 0.14 12.5 0.1 1.3 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:280911-281231 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~280911-281231 NAM-associated PF14303.1 g41194.t1 - 0.11 12.7 1.3 0.12 12.7 0.5 1.4 1 1 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold984_contigs=3, transcript_loc=scaffold984_contigs=3:66420-66686 Augustus predicted protein sequence Tobacco scaffold984_contigs=3~66420-66686 CCG PF02754.11 g96476.t1 - 0.053 13.5 0.3 0.074 13 0.2 1.2 1 0 0 1 1 1 0 Cysteine-rich domain | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:86498-86914 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~86498-86914 Microvir_lysis PF04517.7 g117441.t1 - 0.064 13 0.8 0.42 10.3 0.2 2.2 2 0 0 2 2 2 0 Microvirus lysis protein (E), C terminus | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:178407-178778 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~178407-178778 DnaI_N PF07319.6 g49798.t1 - 0.062 13.5 0.2 0.069 13.3 0.2 1.2 1 1 0 1 1 1 0 Primosomal protein DnaI N-terminus | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:159672-160358 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~159672-160358 Inhibitor_I9 PF05922.11 g26191.t1 - 0.087 13.4 0 0.11 13 0 1.1 1 0 0 1 1 1 0 Peptidase inhibitor I9 | Ref_seq=scaffold712_contigs=6, transcript_loc=scaffold712_contigs=6:8789-9001 Augustus predicted protein sequence Tobacco scaffold712_contigs=6~8789-9001 Fzo_mitofusin PF04799.8 g73072.t1 - 0.016 14.5 0.2 0.02 14.2 0.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:178868-179197 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~178868-179197 Ku_C PF03730.9 g116004.t1 - 3.8 8.1 5.7 7.3 7.2 3.9 1.4 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm | Ref_seq=scaffold2667_contigs=25, transcript_loc=scaffold2667_contigs=25:377186-377813 Augustus predicted protein sequence Tobacco scaffold2667_contigs=25~377186-377813 UBN2 PF14223.1 g124157.t1 - 0.062 13 0.1 0.083 12.6 0 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1457865-1460238 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1457865-1460238 CEP44 PF15007.1 g2429.t1 - 0.015 14.9 0 0.016 14.9 0 1.1 1 0 0 1 1 1 0 Centrosomal spindle body, CEP44 | Ref_seq=scaffold212_contigs=2, transcript_loc=scaffold212_contigs=2:32277-32501 Augustus predicted protein sequence Tobacco scaffold212_contigs=2~32277-32501 GRP PF07172.6 g25814.t1 - 0.53 10.7 10.1 0.61 10.5 7 1.2 1 0 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold704_contigs=10, transcript_loc=scaffold704_contigs=10:138961-139266 Augustus predicted protein sequence Tobacco scaffold704_contigs=10~138961-139266 Corona_M PF01635.13 g102103.t1 - 0.061 12.2 0 0.069 12.1 0 1.2 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:89673-89879 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~89673-89879 Prim-Pol PF09250.6 g332.t1 - 0.024 14.5 0 0.035 14 0 1.2 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal | Ref_seq=scaffold14_contigs=6, transcript_loc=scaffold14_contigs=6:27197-27865 Augustus predicted protein sequence Tobacco scaffold14_contigs=6~27197-27865 cobW PF02492.14 g123139.t1 - 0.09 12.2 0.1 0.15 11.5 0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain | Ref_seq=scaffold2754_contigs=4, transcript_loc=scaffold2754_contigs=4:60525-60848 Augustus predicted protein sequence Tobacco scaffold2754_contigs=4~60525-60848 Nop14 PF04147.7 g74120.t1 - 0.068 11 20.5 0.064 11.1 14.2 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:577576-578097 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~577576-578097 DUF1725 PF08333.6 g85419.t1 - 0.003 16.8 0.3 0.0057 15.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1725) | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:49718-50083 Augustus predicted protein sequence Tobacco scaffold1834_contigs=13~49718-50083 NADH_4Fe-4S PF10589.4 g60407.t1 - 0.023 13.8 0.2 0.053 12.6 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold1309_contigs=4, transcript_loc=scaffold1309_contigs=4:67098-69014 Augustus predicted protein sequence Tobacco scaffold1309_contigs=4~67098-69014 HC2 PF07382.6 g47660.t1 - 0.0045 16.8 8.6 0.0051 16.7 5.9 1.1 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:450827-451174 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~450827-451174 Corona_NS4 PF03905.8 g130504.t1 - 0.083 12.7 0.1 0.13 12 0 1.2 1 0 0 1 1 1 0 Coronavirus non-structural protein NS4 | Ref_seq=scaffold4750_contigs=1, transcript_loc=scaffold4750_contigs=1:1-293 Augustus predicted protein sequence Tobacco scaffold4750_contigs=1~1-293 Synthase_beta PF11421.3 g26251.t1 - 4.9 7.8 7.5 5 7.8 2.9 2.2 1 1 1 2 2 2 0 ATP synthase F1 beta subunit | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:156777-157204 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~156777-157204 UBN2 PF14223.1 g46052.t1 - 0.015 15.1 3.9 0.049 13.4 0 2.7 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:388524-389247 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~388524-389247 Osmo_CC PF08946.5 g14842.t1 - 0.0023 17.9 0.1 0.0023 17.9 0.1 2 2 0 0 2 2 2 1 Osmosensory transporter coiled coil | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:41281-41998 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~41281-41998 Transposase_24 PF03004.9 g23515.t1 - 0.000011 25.3 1.1 0.000014 24.9 0.7 1.2 1 0 0 1 1 1 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold648_contigs=4, transcript_loc=scaffold648_contigs=4:148569-149573 Augustus predicted protein sequence Tobacco scaffold648_contigs=4~148569-149573 zf-CCCH_2 PF14608.1 g110459.t1 - 0.14 12.1 2 0.24 11.4 1.4 1.4 1 0 0 1 1 1 0 Zinc finger C-x8-C-x5-C-x3-H type | Ref_seq=scaffold2550_contigs=9, transcript_loc=scaffold2550_contigs=9:4966-5235 Augustus predicted protein sequence Tobacco scaffold2550_contigs=9~4966-5235 YdjO PF14169.1 g107022.t1 - 0.68 9.4 4.9 1 8.8 0.8 2.4 3 0 0 3 3 3 0 Cold-inducible protein YdjO | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:385856-386814 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~385856-386814 DUF768 PF05589.6 g11970.t1 - 0.26 11.2 0.2 0.26 11.2 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF768) | Ref_seq=scaffold421_contigs=12, transcript_loc=scaffold421_contigs=12:74702-75016 Augustus predicted protein sequence Tobacco scaffold421_contigs=12~74702-75016 DUF1347 PF07079.6 g58891.t1 - 0.043 12 0 0.048 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:150293-150757 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~150293-150757 DUF465 PF04325.8 g77209.t1 - 0.035 13.7 0.1 0.059 13 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF465) | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:116819-118041 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~116819-118041 IFP_35_N PF07334.8 g38368.t1 - 0.0079 16.1 0.7 0.013 15.4 0.5 1.4 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:92442-92836 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~92442-92836 Fst_toxin PF13955.1 g124146.t1 - 0.46 10.1 2.8 0.9 9.2 2 1.5 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1432141-1433289 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1432141-1433289 Cwf_Cwc_15 PF04889.7 g25928.t1 - 0.11 12.1 3.2 0.13 11.9 2.2 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:85793-86182 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~85793-86182 BRE1 PF08647.6 g18644.t1 - 0.033 14.1 6.7 0.028 14.3 3.5 1.7 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:363038-363556 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~363038-363556 NinF PF05810.7 g91408.t1 - 1.2 8.9 3.8 1.9 8.3 2.7 1.3 1 0 0 1 1 1 0 NinF protein | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:114914-115929 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~114914-115929 DUF4413 PF14372.1 g90317.t1 - 0.000049 23.2 0.7 0.00015 21.6 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold1960_contigs=6, transcript_loc=scaffold1960_contigs=6:64333-65147 Augustus predicted protein sequence Tobacco scaffold1960_contigs=6~64333-65147 Phage_RpbA PF10789.4 g85558.t1 - 0.21 11.4 0.9 0.43 10.4 0.1 1.8 2 1 1 3 3 3 0 Phage RNA polymerase binding, RpbA | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:51649-52847 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~51649-52847 FH2 PF02181.18 g102418.t1 - 0.024 13.5 0.1 0.026 13.4 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:166092-166391 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~166092-166391 Tropomyosin PF00261.15 g11536.t1 - 0.014 14.4 10.1 0.018 14.1 7 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:286911-287345 Augustus predicted protein sequence Tobacco scaffold408_contigs=6~286911-287345 ATHILA PF03078.10 g104926.t1 - 0.0098 14.5 0 0.011 14.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:105863-106444 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~105863-106444 DNA_III_psi PF03603.8 g113677.t1 - 0.013 15.3 0.1 0.018 14.8 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase III psi subunit | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:156798-157127 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~156798-157127 Orbi_VP3 PF01700.11 g70178.t1 - 0.16 9.3 0 0.2 9 0 1.1 1 0 0 1 1 1 0 Orbivirus VP3 (T2) protein | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:21804-22399 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~21804-22399 VKOR PF07884.9 g129476.t1 - 0.061 13.1 0 0.075 12.8 0 1.1 1 0 0 1 1 1 0 Vitamin K epoxide reductase family | Ref_seq=scaffold2960_contigs=1, transcript_loc=scaffold2960_contigs=1:12892-13200 Augustus predicted protein sequence Tobacco scaffold2960_contigs=1~12892-13200 CDC45 PF02724.9 g67342.t1 - 0.092 10.7 14.9 0.12 10.3 10.3 1.4 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:76062-77018 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~76062-77018 HALZ PF02183.13 g55679.t1 - 0.000007 25.6 7.3 0.0003 20.4 1.7 2.6 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:224806-225258 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~224806-225258 DcuA_DcuB PF03605.9 g8765.t1 - 0.13 11 2.1 0.15 10.8 1.5 1 1 0 0 1 1 1 0 Anaerobic c4-dicarboxylate membrane transporter | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:143383-143727 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~143383-143727 Arena_glycoprot PF00798.13 g44532.t1 - 0.088 11.1 1.1 0.1 10.9 0.7 1 1 0 0 1 1 1 0 Arenavirus glycoprotein | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:354428-355107 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~354428-355107 MdoG PF04349.7 g104779.t1 - 0.13 10.5 0 0.13 10.5 0 1.1 1 0 0 1 1 1 0 Periplasmic glucan biosynthesis protein, MdoG | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:244043-244855 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~244043-244855 PT-VENN PF04829.8 g79384.t1 - 0.032 13.7 0.4 0.051 13.1 0.3 1.3 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif | Ref_seq=scaffold1691_contigs=8, transcript_loc=scaffold1691_contigs=8:27862-28125 Augustus predicted protein sequence Tobacco scaffold1691_contigs=8~27862-28125 gag_pre-integrs PF13976.1 g34748.t1 - 0.016 14.8 0.7 0.028 14 0.4 1.7 1 1 0 1 1 1 0 GAG-pre-integrase domain | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:206902-209175 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~206902-209175 UPF0547 PF10571.4 g111606.t1 - 0.19 11.4 0.8 0.51 10 0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:26724-30351 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~26724-30351 Sipho_Gp157 PF05565.6 g76417.t1 - 0.007 15.9 0 0.008 15.7 0 1 1 0 0 1 1 1 1 Siphovirus Gp157 | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:210769-210990 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~210769-210990 Gamma-thionin PF00304.15 g55159.t1 - 6.7 6.8 7.8 18 5.4 0.3 2.2 1 1 1 2 2 2 0 Gamma-thionin family | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:47108-47407 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~47108-47407 HALZ PF02183.13 g10590.t1 - 0.0032 17.1 8.9 0.015 15 2.3 2.5 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:329979-330470 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~329979-330470 Med2 PF11214.3 g88643.t1 - 0.35 10.9 2.7 0.58 10.2 1.9 1.2 1 0 0 1 1 1 0 Mediator complex subunit 2 | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:67536-68237 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~67536-68237 DUF4290 PF14123.1 g112113.t1 - 0.0016 17.6 0 0.0019 17.4 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4290) | Ref_seq=scaffold2603_contigs=7, transcript_loc=scaffold2603_contigs=7:19777-20168 Augustus predicted protein sequence Tobacco scaffold2603_contigs=7~19777-20168 Bac_chlorC PF02043.12 g26389.t1 - 0.029 14.1 0.2 0.15 11.8 0 1.8 2 0 0 2 2 2 0 Bacteriochlorophyll C binding protein | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:243434-243712 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~243434-243712 SPOB_a PF14689.1 g70711.t1 - 0.032 13.8 0 0.065 12.8 0 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:29219-30287 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~29219-30287 RR_TM4-6 PF06459.7 g11282.t1 - 1.7 8.4 14.5 2 8.2 10 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:105026-105535 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~105026-105535 V_ATPase_I PF01496.14 g50922.t1 - 0.22 9.3 4 0.23 9.2 2.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family | Ref_seq=scaffold1147_contigs=3, transcript_loc=scaffold1147_contigs=3:52827-53234 Augustus predicted protein sequence Tobacco scaffold1147_contigs=3~52827-53234 TAF4 PF05236.9 g13364.t1 - 0.065 12.4 0.1 0.076 12.2 0 1 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:40975-41259 Augustus predicted protein sequence Tobacco scaffold446_contigs=6~40975-41259 BT1 PF03092.11 g111783.t1 - 0.042 12.5 0.1 0.048 12.3 0.1 1.1 1 0 0 1 1 1 0 BT1 family | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:210333-210614 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~210333-210614 Erp_C PF06780.6 g44077.t1 - 0.012 15.4 0.6 0.015 15.1 0.4 1 1 0 0 1 1 1 0 Erp protein C-terminus | Ref_seq=scaffold1033_contigs=1, transcript_loc=scaffold1033_contigs=1:48291-48494 Augustus predicted protein sequence Tobacco scaffold1033_contigs=1~48291-48494 Filaggrin PF03516.8 g68460.t1 - 8.2 6.9 22.8 3.6 8 9.3 2.4 2 0 0 2 2 2 0 Filaggrin | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:104901-105474 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~104901-105474 zf-CCHC PF00098.18 g46838.t1 - 0.000082 22.3 0.7 0.00016 21.4 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1079_contigs=2, transcript_loc=scaffold1079_contigs=2:31072-31944 Augustus predicted protein sequence Tobacco scaffold1079_contigs=2~31072-31944 N_NLPC_P60 PF12912.2 g45647.t1 - 0.044 13.8 0.4 0.092 12.8 0.3 1.6 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:283466-288003 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~283466-288003 SUZ PF12752.2 g48889.t1 - 0.49 10.9 7.1 0.17 12.4 0.8 2.7 1 1 1 2 2 2 0 SUZ domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:555499-556308 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~555499-556308 Radical_SAM PF04055.16 g36057.t1 - 0.043 13.9 0 0.047 13.8 0 1.2 1 0 0 1 1 1 0 Radical SAM superfamily | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:189375-191083 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~189375-191083 DASH_Dad4 PF08650.5 g92497.t1 - 0.31 10.9 2.7 0.41 10.5 0.3 2 2 0 0 2 2 2 0 DASH complex subunit Dad4 | Ref_seq=scaffold1989_contigs=5, transcript_loc=scaffold1989_contigs=5:101363-101728 Augustus predicted protein sequence Tobacco scaffold1989_contigs=5~101363-101728 Sfi1 PF08457.5 g93181.t1 - 0.061 11.7 0.1 0.081 11.3 0 1.1 1 0 0 1 1 1 0 Sfi1 spindle body protein | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:17209-17685 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~17209-17685 R3H PF01424.17 g66018.t1 - 0.027 14.1 0.1 0.064 12.9 0 1.6 1 0 0 1 1 1 0 R3H domain | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:155026-155397 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~155026-155397 DUF4219 PF13961.1 g20774.t1 - 0.000004 26.1 0.1 0.0000057 25.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:227133-227360 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~227133-227360 XPG_I PF00867.13 g46822.t1 - 0.078 13 0 0.12 12.4 0 1.2 1 0 0 1 1 1 0 XPG I-region | Ref_seq=scaffold1077_contigs=2, transcript_loc=scaffold1077_contigs=2:6516-8578 Augustus predicted protein sequence Tobacco scaffold1077_contigs=2~6516-8578 GATase_3 PF07685.9 g89661.t1 - 0.029 13.9 0 0.04 13.5 0 1.1 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:65988-66931 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~65988-66931 DUF3484 PF11983.3 g49907.t1 - 0.00039 21.2 1 0.57 11 0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3484) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:340280-341622 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~340280-341622 FAM101 PF15068.1 g83692.t1 - 0.79 9.1 5.4 0.25 10.7 2.2 1.3 1 1 0 1 1 1 0 FAM101 family | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:30062-30750 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~30062-30750 RVT_3 PF13456.1 g35712.t1 - 0.0000006 29.1 0 0.00000074 28.8 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:183232-184386 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~183232-184386 FoP_duplication PF13865.1 g87263.t1 - 0.0029 18 1.8 0.0035 17.7 1.2 1.1 1 0 0 1 1 1 1 C-terminal duplication domain of Friend of PRMT1 | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:163296-163502 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~163296-163502 UBN2 PF14223.1 g13782.t1 - 0.0079 15.9 1.4 0.011 15.5 0 1.9 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:89553-93837 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~89553-93837 DUF1582 PF07621.6 g114297.t1 - 0.0022 17.8 0.1 3.4 7.8 0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF1582) | Ref_seq=scaffold2644_contigs=21, transcript_loc=scaffold2644_contigs=21:85986-86957 Augustus predicted protein sequence Tobacco scaffold2644_contigs=21~85986-86957 RNA_pol_3_Rpc31 PF11705.3 g96780.t1 - 0.8 9.6 7.9 0.81 9.5 5.5 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:396715-396942 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~396715-396942 Fanconi_A PF03511.9 g26625.t1 - 0.023 14.4 0.1 0.045 13.5 0.1 1.4 1 0 0 1 1 1 0 Fanconi anaemia group A protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:42136-44123 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~42136-44123 DUF3412 PF11892.3 g43045.t1 - 0.095 12.5 0 0.11 12.3 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3412) | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:210939-211956 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~210939-211956 ATHILA PF03078.10 g42697.t1 - 0.00065 18.4 0 0.00067 18.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:378193-378447 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~378193-378447 Plant_tran PF04827.9 g117885.t1 - 0.00052 19.4 0 0.00052 19.4 0 1.2 1 0 0 1 1 1 1 Plant transposon protein | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:175143-177869 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~175143-177869 Humanin PF15040.1 g52800.t1 - 0.11 11.7 0.5 0.23 10.7 0.3 1.5 1 0 0 1 1 1 0 Humanin family | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1116589-1117307 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1116589-1117307 DUF2238 PF09997.4 g115253.t1 - 0.059 12.7 0 0.075 12.4 0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:331609-332617 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~331609-332617 FH2 PF02181.18 g94584.t1 - 0.068 12 0 0.076 11.8 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:105370-105636 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~105370-105636 BORG_CEP PF14957.1 g104375.t1 - 0.056 14.3 0 11 7 0 2.3 2 0 0 2 2 2 0 Cdc42 effector | Ref_seq=scaffold2338_contigs=16, transcript_loc=scaffold2338_contigs=16:21633-26087 Augustus predicted protein sequence Tobacco scaffold2338_contigs=16~21633-26087 RsmJ PF04378.8 g86373.t1 - 0.076 11.9 0 0.11 11.4 0 1.2 1 0 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ | Ref_seq=scaffold1847_contigs=8, transcript_loc=scaffold1847_contigs=8:21717-22733 Augustus predicted protein sequence Tobacco scaffold1847_contigs=8~21717-22733 NP1-WLL PF11733.3 g46077.t1 - 0.12 12.6 10.1 0.15 12.3 7 1.1 1 0 0 1 1 1 0 Non-capsid protein NP1 | Ref_seq=scaffold1054_contigs=13, transcript_loc=scaffold1054_contigs=13:37883-38104 Augustus predicted protein sequence Tobacco scaffold1054_contigs=13~37883-38104 P19Arf_N PF07392.7 g20414.t1 - 0.093 12.9 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:241870-242352 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~241870-242352 zf-LSD1 PF06943.7 g33199.t1 - 0.13 11.8 1 15 5.2 0.1 2.3 2 0 0 2 2 2 0 LSD1 zinc finger | Ref_seq=scaffold826_contigs=19, transcript_loc=scaffold826_contigs=19:79831-80251 Augustus predicted protein sequence Tobacco scaffold826_contigs=19~79831-80251 DUF1347 PF07079.6 g12766.t1 - 0.0063 14.7 0.2 0.0075 14.5 0.1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:435856-436260 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~435856-436260 DUF1423 PF07227.6 g51117.t1 - 0.003 16.3 0.1 0.0031 16.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1423) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:140794-141845 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~140794-141845 Matrilin_ccoil PF10393.4 g130024.t1 - 0.028 13.7 0 0.048 13 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3333_contigs=1, transcript_loc=scaffold3333_contigs=1:1-479 Augustus predicted protein sequence Tobacco scaffold3333_contigs=1~1-479 MEA1 PF06910.6 g30599.t1 - 0.068 12.8 0.5 0.089 12.4 0.4 1.2 1 0 0 1 1 1 0 Male enhanced antigen 1 (MEA1) | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:7173-7847 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~7173-7847 S_tail_recep_bd PF14928.1 g89997.t1 - 0.056 13.6 0.1 0.1 12.7 0 1.5 2 0 0 2 2 2 0 Short tail fibre protein receptor-binding domain | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:199790-200924 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~199790-200924 PT PF04886.7 g103976.t1 - 0.19 11 5.7 0.11 11.7 2.4 1.7 2 0 0 2 2 2 0 PT repeat | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:12961-13677 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~12961-13677 Alpha_E3_glycop PF01563.11 g80920.t1 - 0.11 12.2 0 0.21 11.4 0 1.4 1 0 0 1 1 1 0 Alphavirus E3 glycoprotein | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:83701-84135 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~83701-84135 Mso1_C PF14477.1 g83810.t1 - 0.015 15.6 0.1 3.2 8.1 0 2.3 2 0 0 2 2 2 0 Membrane-polarising domain of Mso1 | Ref_seq=scaffold1805_contigs=6, transcript_loc=scaffold1805_contigs=6:11504-12044 Augustus predicted protein sequence Tobacco scaffold1805_contigs=6~11504-12044 DUF4164 PF13747.1 g41062.t1 - 0.00026 21 0.8 0.00039 20.4 0.5 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4164) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:577484-577847 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~577484-577847 TMF_DNA_bd PF12329.3 g55479.t1 - 0.013 15.3 1.1 0.025 14.3 0.7 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:236287-236610 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~236287-236610 DUF4028 PF13220.1 g117372.t1 - 0.017 14.7 0.4 0.029 13.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4028) | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:13117-13876 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~13117-13876 DUF3054 PF11255.3 g60553.t1 - 0.14 12 0 0.16 11.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3054) | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:551797-552081 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~551797-552081 MHCassoc_trimer PF08831.5 g70263.t1 - 0.037 13.8 0.5 0.055 13.3 0.3 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:182345-183232 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~182345-183232 zf-CCHC_4 PF14392.1 g89914.t1 - 0.000072 22.3 1.5 0.00015 21.3 1 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:27478-29239 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~27478-29239 ATHILA PF03078.10 g61929.t1 - 0.0000019 26.7 0 0.0000019 26.7 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1344_contigs=2, transcript_loc=scaffold1344_contigs=2:73318-73551 Augustus predicted protein sequence Tobacco scaffold1344_contigs=2~73318-73551 HAUS4 PF14735.1 g8151.t1 - 0.013 14.8 0 0.018 14.3 0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:136587-137135 Augustus predicted protein sequence Tobacco scaffold330_contigs=6~136587-137135 PI-PLC-X PF00388.14 g49603.t1 - 0.017 14.5 0 0.021 14.2 0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold1130_contigs=3, transcript_loc=scaffold1130_contigs=3:21073-21321 Augustus predicted protein sequence Tobacco scaffold1130_contigs=3~21073-21321 Vfa1 PF08432.5 g5192.t1 - 0.094 12.7 5.3 0.12 12.3 3.7 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold273_contigs=2, transcript_loc=scaffold273_contigs=2:40337-41037 Augustus predicted protein sequence Tobacco scaffold273_contigs=2~40337-41037 Mcm10 PF09332.6 g15394.t1 - 0.054 12.8 0 0.062 12.6 0 1 1 0 0 1 1 1 0 Mcm10 replication factor | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:234767-235948 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~234767-235948 gag-asp_proteas PF13975.1 g93010.t1 - 0.078 12.8 0 5.8 6.8 0 2.3 1 1 1 2 2 2 0 gag-polyprotein putative aspartyl protease | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:464271-464854 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~464271-464854 CIA30 PF08547.7 g99034.t1 - 0.084 12.7 0.1 0.09 12.6 0 1.1 1 0 0 1 1 1 0 Complex I intermediate-associated protein 30 (CIA30) | Ref_seq=scaffold2168_contigs=4, transcript_loc=scaffold2168_contigs=4:16074-16364 Augustus predicted protein sequence Tobacco scaffold2168_contigs=4~16074-16364 PMD PF10536.4 g128321.t1 - 0.053 12.5 0 0.053 12.5 0 1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold2862_contigs=1, transcript_loc=scaffold2862_contigs=1:15509-15724 Augustus predicted protein sequence Tobacco scaffold2862_contigs=1~15509-15724 Sulfakinin PF08257.6 g57407.t1 - 1.1 9.2 3.3 5.6 7.1 0.1 2.6 2 0 0 2 2 2 0 Sulfakinin family | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:102544-106526 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~102544-106526 Tropomyosin_1 PF12718.2 g38447.t1 - 0.038 13.8 0.1 0.044 13.6 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold940_contigs=2, transcript_loc=scaffold940_contigs=2:36566-36796 Augustus predicted protein sequence Tobacco scaffold940_contigs=2~36566-36796 DUF4413 PF14372.1 g3524.t1 - 0.00000011 31.7 0 0.00000015 31.2 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4413) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:83872-84189 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~83872-84189 NCD3G PF07562.9 g51403.t1 - 0.11 12.2 1 0.11 12.2 0.7 2.2 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:244840-245447 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~244840-245447 Kinesin-relat_1 PF12711.2 g20082.t1 - 0.056 13.8 0.3 0.13 12.6 0.2 1.7 1 0 0 1 1 1 0 Kinesin motor | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:54227-54984 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~54227-54984 Interferon PF00143.14 g128223.t1 - 0.033 14 0.1 0.056 13.3 0.1 1.3 1 1 0 1 1 1 0 Interferon alpha/beta domain | Ref_seq=scaffold2856_contigs=1, transcript_loc=scaffold2856_contigs=1:15778-16263 Augustus predicted protein sequence Tobacco scaffold2856_contigs=1~15778-16263 CCER1 PF15482.1 g95913.t1 - 0.077 12.6 1.4 0.1 12.1 0.9 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing glutamate-rich protein family 1 | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:344381-344752 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~344381-344752 AF-4 PF05110.8 g18761.t1 - 7.1 4.3 11.8 9.7 3.9 8.2 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:692890-694555 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~692890-694555 PaO PF08417.7 g120173.t1 - 0.062 13.2 0 0.11 12.4 0 1.3 1 0 0 1 1 1 0 Pheophorbide a oxygenase | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:196758-197199 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~196758-197199 MRP-L20 PF12824.2 g37795.t1 - 0.036 14 0.2 0.045 13.7 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:37540-37764 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~37540-37764 RhoGEF PF00621.15 g111085.t1 - 0.023 14.5 0.3 0.028 14.3 0.2 1.3 1 1 0 1 1 1 0 RhoGEF domain | Ref_seq=scaffold2578_contigs=10, transcript_loc=scaffold2578_contigs=10:40149-40717 Augustus predicted protein sequence Tobacco scaffold2578_contigs=10~40149-40717 UPF0561 PF10573.4 g124427.t1 - 0.12 12.1 0.3 0.18 11.6 0.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2177620-2178203 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2177620-2178203 SelB-wing_1 PF09105.5 g25095.t1 - 1.1 8.9 3.9 11 5.8 0 3 2 1 1 3 3 3 0 Elongation factor SelB, winged helix | Ref_seq=scaffold687_contigs=8, transcript_loc=scaffold687_contigs=8:9429-10170 Augustus predicted protein sequence Tobacco scaffold687_contigs=8~9429-10170 DUF4403 PF14356.1 g113985.t1 - 0.069 11.4 0.1 0.076 11.3 0.1 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4403) | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:23117-23335 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~23117-23335 GspH PF12019.3 g1944.t1 - 0.003 17.6 0.1 1.5 8.9 0 3.6 1 1 2 4 4 4 1 Type II transport protein GspH | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:48479-50586 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~48479-50586 FEZ PF07763.8 g58245.t1 - 0.1 12.3 0.2 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 FEZ-like protein | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:417295-417905 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~417295-417905 Sds3 PF08598.6 g114073.t1 - 0.006 16.1 1.2 0.0066 16 0.9 1.2 1 0 0 1 1 1 1 Sds3-like | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:190016-190734 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~190016-190734 Zn_Tnp_IS1 PF03811.8 g114552.t1 - 0.022 14.2 1.8 13 5.3 0 3.8 4 1 1 5 5 5 0 InsA N-terminal domain | Ref_seq=scaffold2651_contigs=23, transcript_loc=scaffold2651_contigs=23:14300-15735 Augustus predicted protein sequence Tobacco scaffold2651_contigs=23~14300-15735 Peptidase_M2 PF01401.13 g10479.t1 - 0.13 10.4 0 0.2 9.7 0 1.3 1 1 0 1 1 1 0 Angiotensin-converting enzyme | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:80598-81715 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~80598-81715 APG9 PF04109.11 g56364.t1 - 0.062 12.1 1.3 0.076 11.9 0.9 1.1 1 0 0 1 1 1 0 Autophagy protein Apg9 | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:9132-9783 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~9132-9783 TC1 PF15063.1 g80851.t1 - 0.038 13.5 0 0.071 12.6 0 1.4 1 0 0 1 1 1 0 Thyroid cancer protein 1 | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:176327-177228 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~176327-177228 Dimer_Tnp_hAT PF05699.9 g99846.t1 - 0.062 12.9 0 0.11 12.1 0 1.4 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold2181_contigs=6, transcript_loc=scaffold2181_contigs=6:134391-135169 Augustus predicted protein sequence Tobacco scaffold2181_contigs=6~134391-135169 Transposase_28 PF04195.7 g14231.t1 - 0.000000044 32.6 0.7 0.0022 17.2 0.1 2.2 2 0 0 2 2 2 2 Putative gypsy type transposon | Ref_seq=scaffold464_contigs=10, transcript_loc=scaffold464_contigs=10:23827-25193 Augustus predicted protein sequence Tobacco scaffold464_contigs=10~23827-25193 DUF417 PF04224.7 g1535.t1 - 0.079 12.3 0.1 0.1 11.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF417 | Ref_seq=scaffold184_contigs=2, transcript_loc=scaffold184_contigs=2:247623-247937 Augustus predicted protein sequence Tobacco scaffold184_contigs=2~247623-247937 ChlamPMP_M PF07548.6 g11533.t1 - 0.11 12.1 1.4 0.17 11.5 0.8 1.4 1 1 0 1 1 1 0 Chlamydia polymorphic membrane protein middle domain | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:284440-284886 Augustus predicted protein sequence Tobacco scaffold408_contigs=6~284440-284886 DUF3808 PF10300.4 g80111.t1 - 0.14 10.7 0.4 0.17 10.4 0.3 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3808) | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:162692-162991 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~162692-162991 Pox_H7 PF04787.7 g11442.t1 - 0.087 12.6 0 0.098 12.4 0 1.1 1 0 0 1 1 1 0 Late protein H7 | Ref_seq=scaffold406_contigs=8, transcript_loc=scaffold406_contigs=8:290374-290574 Augustus predicted protein sequence Tobacco scaffold406_contigs=8~290374-290574 Crystallin PF00525.13 g16339.t1 - 0.23 11.6 1 4.6 7.5 0.2 2.1 2 0 0 2 2 2 0 Alpha crystallin A chain, N terminal | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:91045-92290 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~91045-92290 ATHILA PF03078.10 g96025.t1 - 0.0019 16.8 0 0.0021 16.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:52914-53186 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~52914-53186 Apt1 PF10351.4 g93785.t1 - 0.022 13.6 0.1 0.028 13.3 0 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:26280-26735 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~26280-26735 CBFD_NFYB_HMF PF00808.18 g56763.t1 - 0.13 12.3 0 0.2 11.7 0 1.3 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:786474-786861 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~786474-786861 DUF1020 PF06255.8 g34244.t1 - 0.13 11.4 0.1 0.17 11 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1020) | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:90572-92144 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~90572-92144 DUF3407 PF11887.3 g4824.t1 - 0.076 12.2 0 0.083 12.1 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:119296-119598 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~119296-119598 AceK PF06315.6 g74400.t1 - 0.081 11.1 0 0.092 11 0 1.1 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:151188-152741 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~151188-152741 Endonuc-BsobI PF09194.5 g38218.t1 - 0.11 11.3 0 0.14 11 0 1.1 1 0 0 1 1 1 0 Restriction endonuclease BsobI | Ref_seq=scaffold931_contigs=12, transcript_loc=scaffold931_contigs=12:178082-178579 Augustus predicted protein sequence Tobacco scaffold931_contigs=12~178082-178579 Prothymosin PF03247.9 g102491.t1 - 0.43 10.7 5.5 0.67 10.1 3.8 1.3 1 0 0 1 1 1 0 Prothymosin/parathymosin family | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:16032-16754 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~16032-16754 DUF3710 PF12502.3 g105196.t1 - 4.5 6.5 9.4 9.8 5.4 6.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3710) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:539466-539759 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~539466-539759 Herpes_DNAp_acc PF04929.7 g20907.t1 - 5.4 5.8 8.2 0.49 9.2 2.2 1.7 2 0 0 2 2 2 0 Herpes DNA replication accessory factor | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:10884-11998 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~10884-11998 Ribosomal_60s PF00428.14 g88977.t1 - 0.077 13.3 7.9 0.12 12.7 5.5 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:326847-327173 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~326847-327173 Lysis_S PF04971.7 g27977.t1 - 0.0043 16.7 0.1 0.0055 16.3 0.1 1.2 1 0 0 1 1 1 1 Lysis protein S | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:688401-688677 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~688401-688677 Med9 PF07544.8 g60131.t1 - 0.0021 17.7 0.1 0.0045 16.7 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:70464-72422 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~70464-72422 Globin PF00042.17 g111600.t1 - 0.072 13.4 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Globin | Ref_seq=scaffold2589_contigs=1, transcript_loc=scaffold2589_contigs=1:4153-6012 Augustus predicted protein sequence Tobacco scaffold2589_contigs=1~4153-6012 Trypan_PARP PF05887.6 g64266.t1 - 3.8 7.3 18.1 4.6 7 12.5 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:316967-317630 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~316967-317630 CALCOCO1 PF07888.6 g63912.t1 - 0.0024 16.2 6.3 0.003 15.9 4.3 1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:268082-268893 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~268082-268893 NST1 PF13945.1 g40838.t1 - 0.031 14.3 0 0.038 14 0 1.1 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold982_contigs=2, transcript_loc=scaffold982_contigs=2:40473-40781 Augustus predicted protein sequence Tobacco scaffold982_contigs=2~40473-40781 DUF2219 PF09982.4 g15988.t1 - 0.083 11.6 0 0.091 11.5 0 1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:247035-247346 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~247035-247346 DUF3593 PF12159.3 g103440.t1 - 5.3 6.8 6.6 11 5.8 4.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3593) | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:565073-565609 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~565073-565609 HD-ZIP_N PF04618.7 g14136.t1 - 3.2 8.3 5.3 7.3 7.1 3.7 1.8 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold462_contigs=7, transcript_loc=scaffold462_contigs=7:147503-147931 Augustus predicted protein sequence Tobacco scaffold462_contigs=7~147503-147931 Exonuc_X-T_C PF08411.5 g85483.t1 - 0.0017 17.4 1.1 0.0028 16.7 0.8 1.3 1 0 0 1 1 1 1 Exonuclease C-terminal | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:210845-211429 Augustus predicted protein sequence Tobacco scaffold1834_contigs=13~210845-211429 zf-CCHC PF00098.18 g18063.t1 - 0.0000017 27.6 2.6 0.0000017 27.6 1.8 2.6 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:86946-87842 Augustus predicted protein sequence Tobacco scaffold541_contigs=3~86946-87842 EB1_binding PF05937.6 g76377.t1 - 0.049 14 1.6 0.052 13.9 1.1 1.1 1 0 0 1 1 1 0 EB-1 Binding Domain | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:65203-65843 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~65203-65843 UBN2_3 PF14244.1 g103056.t1 - 0.067 12.7 0 0.069 12.7 0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2287_contigs=19, transcript_loc=scaffold2287_contigs=19:84657-84896 Augustus predicted protein sequence Tobacco scaffold2287_contigs=19~84657-84896 QLQ PF08880.6 g67429.t1 - 0.11 11.9 2.3 1.3 8.4 0.1 2.7 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:257270-257956 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~257270-257956 DUF2187 PF09953.4 g74508.t1 - 0.094 12.4 0.1 3 7.6 0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:16323-16748 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~16323-16748 DUF3664 PF12406.3 g129356.t1 - 0.06 13.9 2.1 0.11 13.1 1.4 1.4 1 0 0 1 1 1 0 Surface protein | Ref_seq=scaffold2943_contigs=1, transcript_loc=scaffold2943_contigs=1:5715-5984 Augustus predicted protein sequence Tobacco scaffold2943_contigs=1~5715-5984 ATHILA PF03078.10 g99521.t1 - 0.0023 16.5 0.2 0.003 16.2 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:747318-748348 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~747318-748348 Delta_lysin PF05372.6 g81201.t1 - 0.13 11.6 0.1 0.22 10.8 0.1 1.3 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:160507-162549 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~160507-162549 RimM PF01782.13 g40107.t1 - 0.13 12.2 0.3 0.14 12 0.2 1.1 1 0 0 1 1 1 0 RimM N-terminal domain | Ref_seq=scaffold967_contigs=1, transcript_loc=scaffold967_contigs=1:1298-1507 Augustus predicted protein sequence Tobacco scaffold967_contigs=1~1298-1507 SH3_4 PF06347.8 g8995.t1 - 0.094 12.2 2.3 1 8.9 0 2.5 3 0 0 3 3 3 0 Bacterial SH3 domain | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:18095-18451 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~18095-18451 Vps5 PF09325.5 g909.t1 - 0.0054 16 0.7 0.0074 15.5 0.5 1.1 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:102267-103503 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~102267-103503 DUF2630 PF10944.3 g114945.t1 - 0.051 13.6 0.1 0.072 13.2 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2630) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:429137-429568 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~429137-429568 PRCC PF10253.4 g20194.t1 - 0.0082 16.8 0.1 0.009 16.7 0 1.2 1 0 0 1 1 1 1 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:272101-272325 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~272101-272325 TMEM18 PF14770.1 g69223.t1 - 0.0073 15.8 0.1 0.0073 15.8 0 1.5 2 0 0 2 2 2 1 Transmembrane protein 18 | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:6676-6963 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~6676-6963 DUF4201 PF13870.1 g64645.t1 - 0.0038 16.6 7.7 0.058 12.8 1.9 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:203348-203965 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~203348-203965 Y_phosphatase2 PF03162.8 g113567.t1 - 0.039 13.3 0 0.043 13.1 0 1.1 1 0 0 1 1 1 0 Tyrosine phosphatase family | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:113950-114186 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~113950-114186 DUF3079 PF11278.3 g76014.t1 - 0.0085 15.6 1.2 2.3 7.8 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3079) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:16696-17084 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~16696-17084 PBP_sp32 PF07222.7 g46015.t1 - 0.74 8.9 5.8 0.48 9.5 3 1.4 1 1 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold1053_contigs=5, transcript_loc=scaffold1053_contigs=5:312144-315416 Augustus predicted protein sequence Tobacco scaffold1053_contigs=5~312144-315416 DUF1632 PF07857.7 g87456.t1 - 0.076 12.2 0 0.091 11.9 0 1.1 1 0 0 1 1 1 0 CEO family (DUF1632) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:140943-141233 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~140943-141233 Plant_NMP1 PF06694.6 g66931.t1 - 0.0096 14.8 0.2 0.0097 14.8 0.1 1.1 1 0 0 1 1 1 1 Plant nuclear matrix protein 1 (NMP1) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:147438-149133 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~147438-149133 Tropomyosin PF00261.15 g57331.t1 - 0.013 14.5 0.1 0.015 14.3 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:66326-66775 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~66326-66775 DUF4404 PF14357.1 g123683.t1 - 0.022 15.1 0.9 0.022 15.1 0.6 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:306815-310907 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~306815-310907 DUF1347 PF07079.6 g104285.t1 - 0.092 10.9 0 0.12 10.5 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:377736-378290 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~377736-378290 ParB PF08775.5 g34329.t1 - 0.069 13.4 0.1 0.071 13.4 0.1 1.1 1 0 0 1 1 1 0 ParB family | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:12975-13202 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~12975-13202 zf-CCHC PF00098.18 g52095.t1 - 0.00015 21.5 0.8 0.0003 20.5 0.6 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:372616-373395 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~372616-373395 DUF4286 PF14114.1 g88689.t1 - 0.12 12.6 0 2.7 8.3 0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4286) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:168711-169683 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~168711-169683 Cytadhesin_P30 PF07271.6 g82792.t1 - 0.062 12.5 3.1 0.079 12.2 2.2 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:86141-86728 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~86141-86728 MRI PF15325.1 g31661.t1 - 0.3 12 3.5 0.37 11.7 2.5 1.2 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:46415-47032 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~46415-47032 CENP-B_dimeris PF09026.5 g67602.t1 - 0.014 15.6 7.3 0.038 14.2 5.1 1.8 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1451_contigs=1, transcript_loc=scaffold1451_contigs=1:20304-21227 Augustus predicted protein sequence Tobacco scaffold1451_contigs=1~20304-21227 DUF4611 PF15387.1 g59175.t1 - 0.037 14.1 0 0.053 13.6 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:76323-76553 Augustus predicted protein sequence Tobacco scaffold1283_contigs=15~76323-76553 C2 PF00168.25 g7532.t1 - 0.1 12.4 0.1 2.4 8 0.1 2.1 1 1 0 1 1 1 0 C2 domain | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:298513-298839 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~298513-298839 DUF825 PF05695.7 g101833.t1 - 0.0077 13.7 0 0.0077 13.7 0 1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF825) | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:45121-47184 Augustus predicted protein sequence Tobacco scaffold2223_contigs=8~45121-47184 DegT_DnrJ_EryC1 PF01041.12 g74268.t1 - 0.0058 15.7 0 0.0072 15.4 0 1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:48379-48933 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~48379-48933 ATHILA PF03078.10 g80404.t1 - 0.0018 16.9 0.1 0.002 16.8 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1716_contigs=6, transcript_loc=scaffold1716_contigs=6:198315-198701 Augustus predicted protein sequence Tobacco scaffold1716_contigs=6~198315-198701 DUF4074 PF13293.1 g112309.t1 - 0.0016 18.5 0.3 2.3 8.5 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4074) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:58517-59207 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~58517-59207 QLQ PF08880.6 g7953.t1 - 0.92 8.9 0.1 0.92 8.9 0 4.3 4 2 0 4 4 4 0 QLQ | Ref_seq=scaffold326_contigs=6, transcript_loc=scaffold326_contigs=6:1-1012 Augustus predicted protein sequence Tobacco scaffold326_contigs=6~1-1012 HSBP1 PF06825.7 g129287.t1 - 0.066 12.8 0.3 0.075 12.6 0.2 1.2 1 0 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold2936_contigs=1, transcript_loc=scaffold2936_contigs=1:4698-4940 Augustus predicted protein sequence Tobacco scaffold2936_contigs=1~4698-4940 DUF3220 PF11516.3 g96023.t1 - 0.067 13.1 0.1 0.086 12.8 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3120) | Ref_seq=scaffold2090_contigs=6, transcript_loc=scaffold2090_contigs=6:50399-50934 Augustus predicted protein sequence Tobacco scaffold2090_contigs=6~50399-50934 Rot1 PF10681.4 g97190.t1 - 0.043 13.1 0.5 0.054 12.8 0.3 1.1 1 0 0 1 1 1 0 Chaperone for protein-folding within the ER, fungal | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:245507-246617 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~245507-246617 CT47 PF15623.1 g74762.t1 - 1.9 8.1 19.3 2.2 7.9 13.4 1 1 0 0 1 1 1 0 Cancer/testis gene family 47 | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:38465-38908 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~38465-38908 Telomere_reg-2 PF10193.4 g21431.t1 - 0.042 14.1 0.1 0.063 13.5 0.1 1.3 1 0 0 1 1 1 0 Telomere length regulation protein | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:454494-456608 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~454494-456608 CENP-B_dimeris PF09026.5 g81200.t1 - 0.28 11.4 8.3 0.68 10.1 5.7 1.7 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1725_contigs=3, transcript_loc=scaffold1725_contigs=3:156237-158442 Augustus predicted protein sequence Tobacco scaffold1725_contigs=3~156237-158442 Dermcidin PF15291.1 g74212.t1 - 0.02 15 1.1 0.043 14 0.8 1.7 1 1 0 1 1 1 0 Dermcidin, antibiotic peptide | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:774731-775466 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~774731-775466 Frag1 PF10277.4 g23494.t1 - 0.41 10 4.4 0.48 9.8 3 1.2 1 0 0 1 1 1 0 Frag1/DRAM/Sfk1 family | Ref_seq=scaffold648_contigs=4, transcript_loc=scaffold648_contigs=4:58315-59196 Augustus predicted protein sequence Tobacco scaffold648_contigs=4~58315-59196 Mito_fiss_reg PF05308.6 g22642.t1 - 0.19 11 1.3 0.22 10.8 0.9 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:60870-61151 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~60870-61151 DUF1299 PF06975.6 g88662.t1 - 0.32 10.8 1.7 0.47 10.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1299) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:108566-109364 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~108566-109364 Cyt-b5 PF00173.23 g16350.t1 - 0.14 12 0 15 5.4 0 2.2 1 1 1 2 2 2 0 Cytochrome b5-like Heme/Steroid binding domain | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:116810-118056 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~116810-118056 Adeno_terminal PF02459.10 g5126.t1 - 0.012 13.8 0.5 0.015 13.5 0.3 1.1 1 0 0 1 1 1 0 Adenoviral DNA terminal protein | Ref_seq=scaffold271_contigs=10, transcript_loc=scaffold271_contigs=10:48673-51362 Augustus predicted protein sequence Tobacco scaffold271_contigs=10~48673-51362 Fzo_mitofusin PF04799.8 g124342.t1 - 0.012 15 3.1 0.014 14.7 2.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1964833-1965270 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1964833-1965270 PPV_E2_N PF00508.12 g21170.t1 - 0.11 11.7 0 0.24 10.5 0 1.6 2 0 0 2 2 2 0 E2 (early) protein, N terminal | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:176168-176959 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~176168-176959 Cobl PF09469.5 g28648.t1 - 0.15 12 0.1 0.33 10.9 0 1.6 2 0 0 2 2 2 0 Cordon-bleu ubiquitin-like domain | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:70879-71307 Augustus predicted protein sequence Tobacco scaffold750_contigs=7~70879-71307 ACT_6 PF13740.1 g122972.t1 - 0.064 12.9 0 0.15 11.8 0 1.6 2 0 0 2 2 2 0 ACT domain | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:281511-281958 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~281511-281958 Sigma70_ner PF04546.8 g81109.t1 - 0.0054 16.3 6 0.008 15.8 4.2 1.3 1 0 0 1 1 1 1 Sigma-70, non-essential region | Ref_seq=scaffold1724_contigs=2, transcript_loc=scaffold1724_contigs=2:15775-17003 Augustus predicted protein sequence Tobacco scaffold1724_contigs=2~15775-17003 DUF573 PF04504.9 g58819.t1 - 0.0000023 27.7 1.3 0.0000025 27.6 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF573 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:36530-37365 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~36530-37365 DUF1682 PF07946.9 g66798.t1 - 0.0029 16.5 4.7 0.0029 16.4 3.3 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:771265-771567 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~771265-771567 Ribonuc_red_2_N PF08471.5 g70077.t1 - 0.096 12.7 0 0.13 12.3 0 1.4 1 1 0 1 1 1 0 Class II vitamin B12-dependent ribonucleotide reductase | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:203333-203713 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~203333-203713 DUF4597 PF15366.1 g75264.t1 - 0.042 13.4 0.5 0.059 12.9 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4597) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:38171-39471 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~38171-39471 Minor_capsid_3 PF12691.2 g46231.t1 - 0.026 14.2 0 6.3 6.5 0 2 2 0 0 2 2 2 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold1062_contigs=3, transcript_loc=scaffold1062_contigs=3:1-1531 Augustus predicted protein sequence Tobacco scaffold1062_contigs=3~1-1531 IBB PF01749.15 g958.t1 - 0.49 10.5 2.8 0.26 11.4 0.5 1.7 2 1 0 2 2 2 0 Importin beta binding domain | Ref_seq=scaffold87_contigs=1, transcript_loc=scaffold87_contigs=1:8880-9407 Augustus predicted protein sequence Tobacco scaffold87_contigs=1~8880-9407 MTBP_C PF14920.1 g71439.t1 - 0.031 13.7 3 0.032 13.7 2.1 1 1 0 0 1 1 1 0 MDM2-binding | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:16232-16723 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~16232-16723 CofC PF01983.11 g28242.t1 - 0.056 12.3 0.7 0.11 11.3 0.5 1.5 1 1 1 2 2 2 0 Guanylyl transferase CofC like | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:28500-29166 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~28500-29166 CmcI PF04989.7 g28810.t1 - 0.0013 18.1 0.5 0.033 13.5 0 2 1 1 1 2 2 2 2 Cephalosporin hydroxylase | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:339227-339937 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~339227-339937 Cu2_monoox_C PF03712.10 g65333.t1 - 0.2 10.9 0.7 0.29 10.4 0.4 1.3 1 1 0 1 1 1 0 Copper type II ascorbate-dependent monooxygenase, C-terminal domain | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:40463-41059 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~40463-41059 RNA_pol_Rbc25 PF08292.7 g89525.t1 - 0.31 11.2 1.6 0.35 11 1.1 1 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 | Ref_seq=scaffold1948_contigs=36, transcript_loc=scaffold1948_contigs=36:199959-200263 Augustus predicted protein sequence Tobacco scaffold1948_contigs=36~199959-200263 MIP-T3 PF10243.4 g10515.t1 - 0.93 7.8 5.8 1.1 7.6 4 1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:175252-175770 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~175252-175770 Toprim_C_rpt PF13368.1 g103294.t1 - 1.8 9 6.7 2.8 8.4 4.7 1.3 1 0 0 1 1 1 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:320492-320770 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~320492-320770 OAD_gamma PF04277.8 g94196.t1 - 0.075 13.4 1.3 0.12 12.7 0.9 1.3 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:167163-167537 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~167163-167537 DREV PF05219.7 g51131.t1 - 0.058 12.2 0 0.077 11.8 0 1.1 1 0 0 1 1 1 0 DREV methyltransferase | Ref_seq=scaffold1151_contigs=2, transcript_loc=scaffold1151_contigs=2:10662-11282 Augustus predicted protein sequence Tobacco scaffold1151_contigs=2~10662-11282 PPDFL PF15060.1 g116820.t1 - 0.097 12.6 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 Differentiation and proliferation regulator | Ref_seq=scaffold2676_contigs=4, transcript_loc=scaffold2676_contigs=4:139936-140367 Augustus predicted protein sequence Tobacco scaffold2676_contigs=4~139936-140367 Pax2_C PF12403.3 g107691.t1 - 0.0011 18.6 2.3 0.13 11.9 0.2 2.2 2 0 0 2 2 2 2 Paired-box protein 2 C terminal | Ref_seq=scaffold2405_contigs=11, transcript_loc=scaffold2405_contigs=11:12969-13805 Augustus predicted protein sequence Tobacco scaffold2405_contigs=11~12969-13805 Cwf_Cwc_15 PF04889.7 g15271.t1 - 8.4 6 10.5 5.7 6.5 6.3 1.4 1 1 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:37032-37643 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~37032-37643 NDUF_B5 PF09781.4 g56642.t1 - 0.037 13.3 0 0.048 12.9 0 1.1 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:558150-559800 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~558150-559800 AceK PF06315.6 g110466.t1 - 0.0043 15.4 0.3 0.0045 15.3 0.2 1 1 0 0 1 1 1 1 Isocitrate dehydrogenase kinase/phosphatase (AceK) | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:5943-6481 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~5943-6481 Not3 PF04065.10 g75462.t1 - 0.0034 16.7 3.2 0.0037 16.5 2.2 1.2 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:9943-10365 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~9943-10365 EVE PF01878.13 g116732.t1 - 0.1 12.5 0.2 0.12 12.4 0.2 1.1 1 0 0 1 1 1 0 EVE domain | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:35889-36158 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~35889-36158 ACP_syn_III PF08545.5 g93553.t1 - 0.14 11.8 0 0.26 10.9 0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:111854-114185 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~111854-114185 DUF4201 PF13870.1 g114238.t1 - 0.0083 15.5 7.4 0.04 13.3 2.7 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:348700-349305 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~348700-349305 CAP_N PF01213.14 g74551.t1 - 0.12 11.6 6.7 0.15 11.3 4.6 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:126037-126699 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~126037-126699 Trypan_PARP PF05887.6 g118488.t1 - 0.84 9.4 11.8 0.95 9.2 8.2 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:35299-35588 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~35299-35588 Retrotrans_gag PF03732.12 g13339.t1 - 0.089 12.8 0 0.16 12 0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold445_contigs=2, transcript_loc=scaffold445_contigs=2:5439-6201 Augustus predicted protein sequence Tobacco scaffold445_contigs=2~5439-6201 Ycf54 PF10674.4 g39993.t1 - 0.02 15 0.5 3.1 7.9 0.1 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2488) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:152228-152541 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~152228-152541 DUF1971 PF09313.6 g38736.t1 - 0.066 12.9 0.1 0.42 10.3 0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1971) | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:49838-50427 Augustus predicted protein sequence Tobacco scaffold943_contigs=4~49838-50427 CALCOCO1 PF07888.6 g66453.t1 - 0.022 13 5 0.032 12.5 3.4 1.3 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:126374-127202 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~126374-127202 DUF972 PF06156.8 g83740.t1 - 0.021 15.1 12.9 0.021 15.1 9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:141799-142179 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~141799-142179 LRRNT PF01462.13 g105388.t1 - 4.1 6.9 7.9 1.1 8.8 0.2 2.2 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:566180-566398 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~566180-566398 DUF605 PF04652.11 g34521.t1 - 0.91 8.8 15.1 1.1 8.5 10.4 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:20885-21358 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~20885-21358 PP_M1 PF03012.9 g41266.t1 - 0.017 14.4 1.7 0.02 14.2 1.2 1.2 1 0 0 1 1 1 0 Phosphoprotein | Ref_seq=scaffold987_contigs=6, transcript_loc=scaffold987_contigs=6:9052-9494 Augustus predicted protein sequence Tobacco scaffold987_contigs=6~9052-9494 Mito_fiss_reg PF05308.6 g25998.t1 - 0.16 11.2 0.2 0.21 10.9 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:249129-250080 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~249129-250080 TrbC PF04956.8 g24058.t1 - 0.094 12.7 0 0.11 12.5 0 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family | Ref_seq=scaffold663_contigs=3, transcript_loc=scaffold663_contigs=3:6141-6389 Augustus predicted protein sequence Tobacco scaffold663_contigs=3~6141-6389 NtA PF03146.10 g126960.t1 - 0.054 13.1 0 0.066 12.8 0 1.2 1 0 0 1 1 1 0 Agrin NtA domain | Ref_seq=scaffold2810_contigs=1, transcript_loc=scaffold2810_contigs=1:12187-14722 Augustus predicted protein sequence Tobacco scaffold2810_contigs=1~12187-14722 PMD PF10536.4 g65755.t1 - 0.0014 17.7 0 0.0015 17.5 0 1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1428_contigs=7, transcript_loc=scaffold1428_contigs=7:3158-3490 Augustus predicted protein sequence Tobacco scaffold1428_contigs=7~3158-3490 Tropomyosin_1 PF12718.2 g20148.t1 - 0.062 13.1 0.5 0.073 12.9 0.3 1.1 1 0 0 1 1 1 0 Tropomyosin like | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:203925-204155 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~203925-204155 Cytokin-bind PF09265.5 g112421.t1 - 0.015 14.4 1.1 23 4 0 3 2 1 1 3 3 3 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:1865-5412 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~1865-5412 SSP160 PF06933.6 g91478.t1 - 0.53 8.2 4.1 0.42 8.5 2.9 1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:70636-70933 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~70636-70933 PilO PF04350.8 g129858.t1 - 0.013 15.3 0 3 7.7 0 2.2 1 1 1 2 2 2 0 Pilus assembly protein, PilO | Ref_seq=scaffold3125_contigs=1, transcript_loc=scaffold3125_contigs=1:1-1095 Augustus predicted protein sequence Tobacco scaffold3125_contigs=1~1-1095 Herpes_BLRF2 PF05812.7 g37000.t1 - 0.025 14.3 0.4 0.04 13.7 0.3 1.3 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:87938-89089 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~87938-89089 Flavodoxin_3 PF12641.2 g116291.t1 - 0.098 12 0.6 15 4.9 0 2.4 2 0 0 2 2 2 0 Flavodoxin domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:28810-30732 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~28810-30732 HTH_8 PF02954.14 g31474.t1 - 2.7 7.6 4.7 1.1 8.9 0.1 2.6 3 1 0 3 3 3 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:165275-165736 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~165275-165736 Utp14 PF04615.8 g11128.t1 - 0.016 13.4 0 0.02 13 0 1 1 0 0 1 1 1 0 Utp14 protein | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:160789-162901 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~160789-162901 zf-CCHC PF00098.18 g94940.t1 - 0.0088 15.9 3.6 0.014 15.3 2.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2049_contigs=3, transcript_loc=scaffold2049_contigs=3:21875-22299 Augustus predicted protein sequence Tobacco scaffold2049_contigs=3~21875-22299 DUF2618 PF10940.3 g123315.t1 - 0.88 9.3 4.3 26 4.7 0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2618) | Ref_seq=scaffold2756_contigs=5, transcript_loc=scaffold2756_contigs=5:126327-126599 Augustus predicted protein sequence Tobacco scaffold2756_contigs=5~126327-126599 TUG-UBL1 PF11470.3 g88192.t1 - 0.077 12.9 0.2 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 GLUT4 regulating protein TUG | Ref_seq=scaffold1915_contigs=10, transcript_loc=scaffold1915_contigs=10:342271-343226 Augustus predicted protein sequence Tobacco scaffold1915_contigs=10~342271-343226 MDMPI_C PF07398.6 g124449.t1 - 0.37 11.3 6.7 0.47 11 0.3 2.1 2 0 0 2 2 2 0 MDMPI C-terminal domain | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:46266-46730 Augustus predicted protein sequence Tobacco scaffold2762_contigs=5~46266-46730 DUF262 PF03235.9 g94114.t1 - 0.13 12.2 0 0.15 11.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF262 | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:327780-328019 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~327780-328019 Spp-24 PF07448.6 g74205.t1 - 0.082 12.8 0.3 0.37 10.7 0.2 1.8 1 1 0 1 1 1 0 Secreted phosphoprotein 24 (Spp-24) | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:770243-770599 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~770243-770599 PRCC PF10253.4 g122157.t1 - 0.061 14 4.1 0.079 13.6 2.9 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:377022-377734 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~377022-377734 DUF1741 PF08427.5 g4251.t1 - 0.024 14 2.1 0.027 13.9 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1741) | Ref_seq=scaffold255_contigs=10, transcript_loc=scaffold255_contigs=10:209243-209623 Augustus predicted protein sequence Tobacco scaffold255_contigs=10~209243-209623 DUF1524 PF07510.6 g15489.t1 - 0.28 11 1.5 0.37 10.6 1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1524) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:458987-459313 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~458987-459313 TATR PF03430.8 g63966.t1 - 0.43 9.1 2.8 0.49 8.9 1.9 1 1 0 0 1 1 1 0 Trans-activating transcriptional regulator | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:35981-36569 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~35981-36569 HTH_DeoR PF08220.7 g44421.t1 - 0.04 13.4 0.1 0.062 12.8 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:40792-43143 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~40792-43143 IncA PF04156.9 g57628.t1 - 0.012 15.2 2.2 0.013 15.1 1.5 1.1 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1253_contigs=5, transcript_loc=scaffold1253_contigs=5:68017-68592 Augustus predicted protein sequence Tobacco scaffold1253_contigs=5~68017-68592 DUF4219 PF13961.1 g13116.t1 - 0.029 13.7 0 0.029 13.7 0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:158424-159429 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~158424-159429 CAF1 PF04857.15 g116724.t1 - 0.051 12.8 0.5 0.067 12.5 0.4 1.2 1 0 0 1 1 1 0 CAF1 family ribonuclease | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:29536-30330 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~29536-30330 IlvGEDA_leader PF08046.6 g103426.t1 - 0.023 13.8 0.5 0.044 12.9 0.3 1.4 1 0 0 1 1 1 0 IlvGEDA operon leader peptide | Ref_seq=scaffold2305_contigs=28, transcript_loc=scaffold2305_contigs=28:504051-504299 Augustus predicted protein sequence Tobacco scaffold2305_contigs=28~504051-504299 Hexose_dehydrat PF03559.9 g79813.t1 - 0.075 12 0.1 0.093 11.7 0.1 1 1 0 0 1 1 1 0 NDP-hexose 2,3-dehydratase | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:234639-234848 Augustus predicted protein sequence Tobacco scaffold1702_contigs=7~234639-234848 Tautomerase_3 PF14832.1 g60453.t1 - 0.03 14.3 0 0.033 14.2 0 1.1 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme | Ref_seq=scaffold1310_contigs=21, transcript_loc=scaffold1310_contigs=21:113212-113540 Augustus predicted protein sequence Tobacco scaffold1310_contigs=21~113212-113540 zf-CCHC PF00098.18 g2927.t1 - 0.013 15.3 0.2 0.019 14.8 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:72204-72536 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~72204-72536 Trypan_PARP PF05887.6 g49684.t1 - 2.2 8 25.3 3.2 7.5 17.6 1.3 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:51823-52269 Augustus predicted protein sequence Tobacco scaffold1132_contigs=4~51823-52269 Imm_superinfect PF14373.1 g32264.t1 - 0.064 12.8 3 0.25 10.9 0 2.2 2 0 0 2 2 2 0 Superinfection immunity protein | Ref_seq=scaffold814_contigs=3, transcript_loc=scaffold814_contigs=3:40483-40890 Augustus predicted protein sequence Tobacco scaffold814_contigs=3~40483-40890 CHZ PF09649.5 g84445.t1 - 0.99 8.6 4.9 1.5 8.1 0 2.7 3 0 0 3 3 3 0 Histone chaperone domain CHZ | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:4293-4541 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~4293-4541 IDO PF01231.13 g22164.t1 - 0.031 12.6 0.1 0.036 12.4 0 1 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:65403-65639 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~65403-65639 PB1 PF00564.19 g88542.t1 - 0.011 15.4 0 0.038 13.6 0 1.9 2 0 0 2 2 2 0 PB1 domain | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:3212-3758 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~3212-3758 CemA PF03040.9 g1619.t1 - 0.018 14.6 0.2 0.02 14.5 0.1 1.1 1 0 0 1 1 1 0 CemA family | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:20486-21154 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~20486-21154 MMS1_N PF10433.4 g68226.t1 - 0.013 13.7 0.1 0.017 13.3 0.1 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:403812-404351 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~403812-404351 zf-CCHC PF00098.18 g18843.t1 - 0.069 13.1 0.8 0.069 13.1 0.5 1.6 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold557_contigs=11, transcript_loc=scaffold557_contigs=11:269742-269945 Augustus predicted protein sequence Tobacco scaffold557_contigs=11~269742-269945 DUF2697 PF10906.3 g113216.t1 - 0.097 12.6 0.1 0.26 11.2 0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2697) | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:74505-74992 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~74505-74992 ATHILA PF03078.10 g20152.t1 - 0.00018 20.2 0 0.00023 19.8 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:206947-207650 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~206947-207650 UBN2 PF14223.1 g36002.t1 - 0.00018 21.2 0.1 0.00033 20.4 0.1 1.3 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:57526-58398 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~57526-58398 DUF1631 PF07793.6 g14659.t1 - 0.09 10.8 0.6 0.11 10.6 0.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) | Ref_seq=scaffold480_contigs=8, transcript_loc=scaffold480_contigs=8:40030-40455 Augustus predicted protein sequence Tobacco scaffold480_contigs=8~40030-40455 RVT_3 PF13456.1 g64307.t1 - 0.00025 20.7 0.1 0.00052 19.7 0.1 1.5 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:414705-415049 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~414705-415049 zf-C3HC PF07967.8 g21562.t1 - 0.083 12.6 0.8 0.097 12.4 0.5 1.3 1 1 0 1 1 1 0 C3HC zinc finger-like | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:10647-10871 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~10647-10871 ATHILA PF03078.10 g96183.t1 - 0.00000001 34.2 0 0.002 16.7 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:53702-54298 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~53702-54298 DASH_Spc19 PF08287.6 g36424.t1 - 0.36 10.4 2.1 0.49 9.9 1.4 1.3 1 1 0 1 1 1 0 Spc19 | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:59373-59966 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~59373-59966 Nucleoporin_C PF03177.9 g10404.t1 - 0.037 12.5 0.6 0.042 12.3 0.4 1 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:295740-296145 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~295740-296145 zf-CCHC PF00098.18 g96707.t1 - 0.00012 21.8 1 0.00025 20.8 0.7 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:197442-198230 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~197442-198230 Tri3 PF07428.6 g119032.t1 - 0.043 12.5 0 0.049 12.3 0 1.1 1 0 0 1 1 1 0 15-O-acetyltransferase Tri3 | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:815679-816200 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~815679-816200 Citrate_ly_lig PF08218.6 g86697.t1 - 0.018 14.5 0 0.024 14.1 0 1.1 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:218081-218948 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~218081-218948 Fes1 PF08609.5 g71925.t1 - 0.66 10.5 3.2 0.41 11.1 0.5 1.8 2 1 0 2 2 2 0 Nucleotide exchange factor Fes1 | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:135073-136052 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~135073-136052 zf-CCCH PF00642.19 g90570.t1 - 0.42 10.3 6.1 1.4 8.6 0.3 2.4 2 0 0 2 2 2 0 Zinc finger C-x8-C-x5-C-x3-H type (and similar) | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:294521-294820 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~294521-294820 SOCS_box PF07525.11 g127842.t1 - 0.14 11.9 1.1 0.31 10.9 0.7 1.6 1 0 0 1 1 1 0 SOCS box | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:7140-7430 Augustus predicted protein sequence Tobacco scaffold2839_contigs=1~7140-7430 zf-BED PF02892.10 g84920.t1 - 0.0011 18.6 0.1 0.0027 17.4 0.1 1.7 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1829_contigs=9, transcript_loc=scaffold1829_contigs=9:128776-130193 Augustus predicted protein sequence Tobacco scaffold1829_contigs=9~128776-130193 CHB_HEX_C_1 PF13290.1 g95543.t1 - 0.0042 16.8 0.2 3.3 7.5 0 2.2 2 0 0 2 2 2 2 Chitobiase/beta-hexosaminidase C-terminal domain | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:799-2815 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~799-2815 Oxysterol_BP PF01237.13 g17710.t1 - 0.0095 14.4 3.3 0.0091 14.5 2.3 1 1 0 0 1 1 1 1 Oxysterol-binding protein | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:15284-15592 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~15284-15592 Latrotoxin_C PF15658.1 g28378.t1 - 0.14 11.9 0 0.15 11.9 0 1.1 1 0 0 1 1 1 0 Latrotoxin C-terminal domain | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:232687-233336 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~232687-233336 FdhE PF04216.7 g100479.t1 - 0.034 13.8 2 0.042 13.5 1.4 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation | Ref_seq=scaffold2195_contigs=2, transcript_loc=scaffold2195_contigs=2:3054-3635 Augustus predicted protein sequence Tobacco scaffold2195_contigs=2~3054-3635 DUF2238 PF09997.4 g6062.t1 - 0.014 14.8 0.1 6.1 6.2 0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2238) | Ref_seq=scaffold291_contigs=11, transcript_loc=scaffold291_contigs=11:34496-35972 Augustus predicted protein sequence Tobacco scaffold291_contigs=11~34496-35972 UBN2 PF14223.1 g68700.t1 - 0.018 14.8 0.6 0.023 14.4 0.4 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:844101-844430 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~844101-844430 Trypan_PARP PF05887.6 g57414.t1 - 7.6 6.3 24.9 11 5.8 17.3 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:119281-119586 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~119281-119586 Nepo_coat_N PF03689.10 g127675.t1 - 0.11 12.2 0 0.16 11.6 0 1.2 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain | Ref_seq=scaffold2833_contigs=1, transcript_loc=scaffold2833_contigs=1:22771-23274 Augustus predicted protein sequence Tobacco scaffold2833_contigs=1~22771-23274 AKAP2_C PF15304.1 g71550.t1 - 0.13 11.8 8.7 0.15 11.6 6 1.1 1 0 0 1 1 1 0 A-kinase anchor protein 2 C-terminus | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:6191-7142 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~6191-7142 zf-CCHC_6 PF15288.1 g70840.t1 - 0.0028 17.2 0.1 0.0097 15.5 0.1 1.9 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:267551-268373 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~267551-268373 P2X_receptor PF00864.14 g72262.t1 - 0.034 12.8 0 0.045 12.4 0 1.1 1 0 0 1 1 1 0 ATP P2X receptor | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:638440-639099 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~638440-639099 Herpes_UL49_2 PF04823.7 g107637.t1 - 0.1 12.5 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus UL49 tegument protein | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:122910-123348 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~122910-123348 Ribosomal_L50 PF10501.4 g15989.t1 - 0.058 13.3 0 0.083 12.8 0 1.4 1 1 0 1 1 1 0 Ribosomal subunit 39S | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:251678-252541 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~251678-252541 Pro-rich_19 PF15455.1 g44623.t1 - 0.054 12.5 2.3 0.067 12.2 1.6 1.1 1 0 0 1 1 1 0 Proline-rich 19 | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:12755-13069 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~12755-13069 Med13_C PF06333.7 g114136.t1 - 0.15 10.5 0.3 0.17 10.3 0.2 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:19858-20506 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~19858-20506 SlyX PF04102.7 g103219.t1 - 0.093 13.1 0.3 0.093 13.1 0.2 1.7 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:163632-163916 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~163632-163916 GP4 PF03010.9 g88518.t1 - 0.11 12.1 0.8 9 5.8 0.1 2.1 1 1 1 2 2 2 0 GP4 | Ref_seq=scaffold1928_contigs=20, transcript_loc=scaffold1928_contigs=20:15280-15761 Augustus predicted protein sequence Tobacco scaffold1928_contigs=20~15280-15761 DUF972 PF06156.8 g23747.t1 - 1.1 9.6 6.5 2.6 8.4 3.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF972) | Ref_seq=scaffold652_contigs=1, transcript_loc=scaffold652_contigs=1:5005-5361 Augustus predicted protein sequence Tobacco scaffold652_contigs=1~5005-5361 RNA_pol_Rpb1_R PF05001.8 g36299.t1 - 5.1 7.4 12.3 2200 -0.8 8.5 2.6 1 1 0 1 1 1 0 RNA polymerase Rpb1 C-terminal repeat | Ref_seq=scaffold883_contigs=3, transcript_loc=scaffold883_contigs=3:11903-12387 Augustus predicted protein sequence Tobacco scaffold883_contigs=3~11903-12387 DUF4219 PF13961.1 g59895.t1 - 0.00011 21.5 0 0.00016 20.9 0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:108434-108649 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~108434-108649 DUF3291 PF11695.3 g51099.t1 - 0.063 12.6 0 0.069 12.5 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3291) | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:90532-90843 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~90532-90843 ATP_bind_3 PF01171.15 g32676.t1 - 0.053 13 0 0.066 12.6 0 1.2 1 0 0 1 1 1 0 PP-loop family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:658599-658988 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~658599-658988 APC_CDC26 PF10471.4 g51701.t1 - 0.085 13.6 5.9 3.3 8.5 0.1 3.1 3 0 0 3 3 3 0 Anaphase-promoting complex APC subunit 1 | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:892-1590 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~892-1590 RNA_pol_3_Rpc31 PF11705.3 g61636.t1 - 0.48 10.3 5.4 0.46 10.3 3.8 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold1337_contigs=2, transcript_loc=scaffold1337_contigs=2:1-223 Augustus predicted protein sequence Tobacco scaffold1337_contigs=2~1-223 zf-C4_ClpX PF06689.8 g98911.t1 - 0.096 12.2 2 0.22 11 1.4 1.6 1 0 0 1 1 1 0 ClpX C4-type zinc finger | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:31618-32191 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~31618-32191 Repressor_Mnt PF11423.3 g109659.t1 - 0.034 13.4 0.1 7.3 6 0 2.4 2 0 0 2 2 2 0 Regulatory protein Mnt | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:242042-242618 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~242042-242618 Planc_extracel PF07595.7 g38637.t1 - 3.9 7.3 7.8 12 5.8 2 2.7 2 0 0 2 2 2 0 Planctomycete extracellular | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:232382-234122 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~232382-234122 Mannitol_dh_C PF08125.8 g11076.t1 - 0.076 12.1 0 0.089 11.9 0 1.1 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:89587-89910 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~89587-89910 EF-hand_like PF09279.6 g108238.t1 - 0.00078 19.4 0.1 0.001 19 0 1.2 1 0 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:984983-985273 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~984983-985273 7TM_GPCR_Srj PF10319.4 g87934.t1 - 0.084 11.9 0.1 0.12 11.5 0 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srj | Ref_seq=scaffold1902_contigs=4, transcript_loc=scaffold1902_contigs=4:42980-45341 Augustus predicted protein sequence Tobacco scaffold1902_contigs=4~42980-45341 NADH-G_4Fe-4S_3 PF10588.4 g84447.t1 - 0.041 13.1 0.7 0.091 12 0.5 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | Ref_seq=scaffold1822_contigs=5, transcript_loc=scaffold1822_contigs=5:7544-9131 Augustus predicted protein sequence Tobacco scaffold1822_contigs=5~7544-9131 PBP1_TM PF14812.1 g35772.t1 - 5.7 7.3 7.3 110 3.1 5.1 2.2 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:368658-369002 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~368658-369002 DUF3636 PF12331.3 g107164.t1 - 0.011 15.3 0.1 0.012 15.2 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3636) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:827172-827390 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~827172-827390 Alpha_L_fucos PF01120.12 g55544.t1 - 0.11 11.4 0 0.13 11.1 0 1.1 1 0 0 1 1 1 0 Alpha-L-fucosidase | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:367014-367547 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~367014-367547 DUF605 PF04652.11 g59795.t1 - 4.4 6.6 13.8 5.1 6.3 9.6 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:199253-199787 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~199253-199787 Trypan_PARP PF05887.6 g87525.t1 - 1.7 8.4 19.4 1.9 8.2 13.4 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:345884-346096 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~345884-346096 LAGLIDADG_2 PF03161.8 g27748.t1 - 0.054 13.4 0 0.071 13 0 1.3 1 1 0 1 1 1 0 LAGLIDADG DNA endonuclease family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:235468-235880 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~235468-235880 Cytokin_check_N PF10407.4 g38398.t1 - 0.071 12.7 0.1 0.13 11.8 0 1.4 1 0 0 1 1 1 0 Cdc14 phosphatase binding protein N-terminus | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:176245-177214 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~176245-177214 PY_rept_46 PF09689.5 g121100.t1 - 0.38 11.1 3.2 0.92 9.8 2.2 1.6 1 0 0 1 1 1 0 Plasmodium yoelii repeat (PY_rept_46) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:380965-381315 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~380965-381315 UL73_N PF12522.3 g86027.t1 - 0.028 13.9 7.4 0.048 13.2 5.1 1.4 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein N terminal | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:36726-37023 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~36726-37023 Voldacs PF03517.8 g28071.t1 - 0.17 11.7 2 0.27 11 1.4 1.2 1 0 0 1 1 1 0 Regulator of volume decrease after cellular swelling | Ref_seq=scaffold734_contigs=2, transcript_loc=scaffold734_contigs=2:5493-5986 Augustus predicted protein sequence Tobacco scaffold734_contigs=2~5493-5986 Adeno_IVa2 PF02456.10 g69565.t1 - 0.069 11.7 0 0.081 11.5 0 1 1 0 0 1 1 1 0 Adenovirus IVa2 protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:454618-454893 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~454618-454893 SlyX PF04102.7 g90275.t1 - 0.25 11.7 1.8 0.54 10.6 1.2 1.5 1 0 0 1 1 1 0 SlyX | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:489596-490000 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~489596-490000 DUF1604 PF07713.8 g120167.t1 - 0.091 12.5 0.1 0.27 11 0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1604) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:190911-191318 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~190911-191318 FlxA PF14282.1 g93991.t1 - 0.021 14.7 2.1 0.028 14.3 1.4 1.2 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:348440-348769 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~348440-348769 DUF3055 PF11256.3 g80882.t1 - 0.016 15.3 0.2 0.026 14.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3055) | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:241359-242350 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~241359-242350 SspO PF08175.7 g18098.t1 - 0.1 12.9 0.1 0.16 12.3 0.1 1.4 1 0 0 1 1 1 0 Small acid-soluble spore protein O family | Ref_seq=scaffold544_contigs=3, transcript_loc=scaffold544_contigs=3:21922-22188 Augustus predicted protein sequence Tobacco scaffold544_contigs=3~21922-22188 Snurportin1 PF11538.3 g33027.t1 - 0.038 13.7 0.2 8.7 6.2 0 2.3 2 0 0 2 2 2 0 Snurportin1 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:197701-199306 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~197701-199306 Pox_Ag35 PF03286.9 g102914.t1 - 0.27 10.7 4.7 0.35 10.3 3.3 1.2 1 0 0 1 1 1 0 Pox virus Ag35 surface protein | Ref_seq=scaffold2272_contigs=16, transcript_loc=scaffold2272_contigs=16:16041-16709 Augustus predicted protein sequence Tobacco scaffold2272_contigs=16~16041-16709 Ecotin PF03974.8 g125531.t1 - 0.13 12 0 0.14 11.8 0 1.1 1 0 0 1 1 1 0 Ecotin | Ref_seq=scaffold2776_contigs=1, transcript_loc=scaffold2776_contigs=1:545-850 Augustus predicted protein sequence Tobacco scaffold2776_contigs=1~545-850 Peptidase_C48 PF02902.14 g101559.t1 - 0.000099 22 0.2 0.00023 20.8 0.1 1.6 1 1 1 2 2 2 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:325048-326765 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~325048-326765 DUF3386 PF11866.3 g58407.t1 - 0.071 12.3 0.2 0.08 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3386) | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:420147-420353 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~420147-420353 zf-CCHC PF00098.18 g127272.t1 - 0.63 10 0.2 0.63 10 0.1 2.1 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:9397-9600 Augustus predicted protein sequence Tobacco scaffold2818_contigs=1~9397-9600 Eno-Rase_NADH_b PF12242.3 g7898.t1 - 0.83 9.4 3.5 0.92 9.3 1.8 1.5 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:40688-40921 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~40688-40921 BAR PF03114.13 g119931.t1 - 0.41 10.1 2.1 0.83 9.1 1.5 1.5 1 1 0 1 1 1 0 BAR domain | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:23424-23762 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~23424-23762 SnoaL PF07366.7 g6104.t1 - 0.11 12 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:45135-45365 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~45135-45365 REV PF00424.13 g63722.t1 - 0.084 12.7 0.2 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:174102-176139 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~174102-176139 TrbE PF11100.3 g119035.t1 - 0.11 12.3 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:823832-824092 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~823832-824092 TMEM190 PF15431.1 g3048.t1 - 0.12 12.3 0 0.15 11.9 0 1.2 1 0 0 1 1 1 0 Transmembrane protein 190 | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:201996-202828 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~201996-202828 DUF3970 PF13113.1 g38639.t1 - 0.072 12.7 0 0.1 12.3 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:236407-236682 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~236407-236682 Neuregulin PF02158.10 g116538.t1 - 0.038 12.7 0.2 0.042 12.6 0.1 1 1 0 0 1 1 1 0 Neuregulin family | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:335552-335923 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~335552-335923 SCP-1 PF05483.7 g71955.t1 - 0.000086 20.5 4 0.000098 20.3 2.8 1.1 1 0 0 1 1 1 1 Synaptonemal complex protein 1 (SCP-1) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:209946-210257 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~209946-210257 SAGA-Tad1 PF12767.2 g93589.t1 - 0.04 13.5 0.5 0.039 13.6 0.3 1.1 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:188709-189213 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~188709-189213 lci PF12197.3 g8430.t1 - 0.13 11.8 0 0.22 11.1 0 1.3 1 0 0 1 1 1 0 Bacillus cereus group antimicrobial protein | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:65718-66369 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~65718-66369 GSK-3_bind PF05350.7 g16121.t1 - 2.2 7.6 6.5 2.7 7.4 4.5 1.1 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding | Ref_seq=scaffold509_contigs=2, transcript_loc=scaffold509_contigs=2:33220-33585 Augustus predicted protein sequence Tobacco scaffold509_contigs=2~33220-33585 DUF4440 PF14534.1 g2827.t1 - 0.14 12.3 0 0.19 11.9 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:47533-47955 Augustus predicted protein sequence Tobacco scaffold219_contigs=6~47533-47955 RVT_3 PF13456.1 g82321.t1 - 0.00094 18.9 0.2 0.0029 17.3 0.1 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:221085-221456 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~221085-221456 GTSE1_N PF15259.1 g111943.t1 - 0.0095 15.8 0.1 0.011 15.6 0.1 1.1 1 0 0 1 1 1 1 G-2 and S-phase expressed 1 | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:149702-150088 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~149702-150088 UPF0731 PF14982.1 g126952.t1 - 0.11 12.3 0.1 2 8.3 0 2 1 1 1 2 2 2 0 UPF0731 family | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:76243-76559 Augustus predicted protein sequence Tobacco scaffold2809_contigs=1~76243-76559 GMC_oxred_C PF05199.8 g26199.t1 - 0.003 17.8 0.6 0.004 17.4 0.4 1.1 1 0 0 1 1 1 1 GMC oxidoreductase | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:17509-17907 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~17509-17907 CAF-1_p150 PF11600.3 g51426.t1 - 0.0062 15.9 29.3 0.0085 15.4 20.3 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:6534-7133 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~6534-7133 TrkA_N PF02254.13 g123220.t1 - 0.13 12.2 0 0.15 12 0 1.1 1 0 0 1 1 1 0 TrkA-N domain | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:103431-103835 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~103431-103835 PEARLI-4 PF05278.7 g39502.t1 - 0.0000057 25.9 4.9 0.0000083 25.3 3.4 1.2 1 0 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:78121-79270 Augustus predicted protein sequence Tobacco scaffold957_contigs=5~78121-79270 zf-CCHC PF00098.18 g44941.t1 - 0.000006 25.9 1.3 0.0000085 25.4 0.9 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:53921-54334 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~53921-54334 gp37_C PF12604.3 g30616.t1 - 0.016 14.9 0 0.022 14.5 0 1.4 1 0 0 1 1 1 0 Tail fiber protein gp37 C terminal | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:31241-32223 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~31241-32223 Sulf_coat_C PF12193.3 g84551.t1 - 0.15 11.8 0 0.65 9.8 0 1.9 1 1 1 2 2 2 0 Sulfolobus virus coat protein C terminal | Ref_seq=scaffold1823_contigs=11, transcript_loc=scaffold1823_contigs=11:181940-182269 Augustus predicted protein sequence Tobacco scaffold1823_contigs=11~181940-182269 DUF1189 PF06691.6 g75827.t1 - 0.001 18.4 0.6 0.0013 18 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1189) | Ref_seq=scaffold1604_contigs=5, transcript_loc=scaffold1604_contigs=5:1461-2003 Augustus predicted protein sequence Tobacco scaffold1604_contigs=5~1461-2003 UPF0561 PF10573.4 g108345.t1 - 0.15 11.9 2.2 6.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold2436_contigs=4, transcript_loc=scaffold2436_contigs=4:9266-9790 Augustus predicted protein sequence Tobacco scaffold2436_contigs=4~9266-9790 SURF6 PF04935.7 g76303.t1 - 0.12 11.6 2.9 0.17 11.1 1.9 1.5 1 1 0 1 1 1 0 Surfeit locus protein 6 | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:132725-133258 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~132725-133258 FDX-ACB PF03147.9 g85565.t1 - 0.0079 16.3 0.1 0.015 15.4 0 1.4 1 1 0 1 1 1 1 Ferredoxin-fold anticodon binding domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:69764-69997 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~69764-69997 Borrelia_rep PF03183.8 g73644.t1 - 0.087 12.6 1.6 0.61 9.9 0.3 2.5 2 0 0 2 2 2 0 Borrelia repeat protein | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:63986-64564 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~63986-64564 HrpB7 PF09486.5 g51725.t1 - 0.0014 18.5 0.4 0.0016 18.3 0.3 1.3 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:73153-73491 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~73153-73491 WXG100 PF06013.7 g4831.t1 - 0.76 9.8 5.7 5.2 7.1 2 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:127355-128255 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~127355-128255 PP2 PF14299.1 g39901.t1 - 0.000013 24.6 0 0.000016 24.3 0 1.2 1 0 0 1 1 1 1 Phloem protein 2 | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:111930-112349 Augustus predicted protein sequence Tobacco scaffold962_contigs=5~111930-112349 TrmB PF01978.14 g51320.t1 - 0.017 14.8 0.3 0.047 13.4 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:37793-38290 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~37793-38290 Herpes_V23 PF01802.12 g20408.t1 - 0.03 13.3 0 0.03 13.3 0 1.1 1 0 0 1 1 1 0 Herpesvirus VP23 like capsid protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:227334-227923 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~227334-227923 DUF4055 PF13264.1 g38127.t1 - 0.022 14.8 0.2 0.028 14.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:251740-252272 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~251740-252272 UBN2 PF14223.1 g125435.t1 - 0.011 15.4 1.7 0.087 12.6 0 2.3 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:104486-105943 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~104486-105943 Phage_NinH PF06322.6 g38228.t1 - 0.056 13 0.3 6 6.5 0 2.2 2 0 0 2 2 2 0 Phage NinH protein | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:1520-1972 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~1520-1972 Transposase_24 PF03004.9 g69338.t1 - 0.018 14.9 0.1 0.023 14.6 0.1 1.2 1 0 0 1 1 1 0 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:20567-21105 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~20567-21105 RVP_2 PF08284.6 g77298.t1 - 0.000000016 34.5 0 0.000000019 34.3 0 1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:268256-268468 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~268256-268468 DUF4250 PF14056.1 g98353.t1 - 0.038 13.6 0.2 0.077 12.7 0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:253574-254136 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~253574-254136 zf-CCHC_5 PF14787.1 g109719.t1 - 0.003 16.9 4.8 0.0061 16 3.3 1.5 1 0 0 1 1 1 1 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:388764-390821 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~388764-390821 Dirigent PF03018.9 g26334.t1 - 0.12 11.8 0 0.13 11.8 0 1.2 1 0 0 1 1 1 0 Dirigent-like protein | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:112982-113411 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~112982-113411 DUF848 PF05852.6 g64185.t1 - 0.12 12.1 1.3 0.14 11.9 0.9 1 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:83676-84549 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~83676-84549 DUF4512 PF14975.1 g88243.t1 - 0.031 15 0 0.036 14.8 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4512) | Ref_seq=scaffold1923_contigs=35, transcript_loc=scaffold1923_contigs=35:32112-32942 Augustus predicted protein sequence Tobacco scaffold1923_contigs=35~32112-32942 SDA1 PF05285.7 g80932.t1 - 0.6 9.3 8.2 0.7 9.1 5.7 1.2 1 0 0 1 1 1 0 SDA1 | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:100700-101735 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~100700-101735 NSP13 PF06460.7 g111057.t1 - 0.013 14.4 0.3 0.015 14.1 0.2 1.1 1 0 0 1 1 1 0 Coronavirus NSP13 | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:186216-186521 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~186216-186521 tRNA_lig_CPD PF08302.6 g98534.t1 - 0.012 14.8 0 0.014 14.6 0 1 1 0 0 1 1 1 0 Fungal tRNA ligase phosphodiesterase domain | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:88278-89186 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~88278-89186 Pap_E4 PF02711.9 g48075.t1 - 0.11 13.3 6.9 0.15 12.8 4.8 1.2 1 0 0 1 1 1 0 E4 protein | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:146230-147124 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~146230-147124 Abhydrolase_2 PF02230.11 g97181.t1 - 0.0029 17 1.5 4.7 6.5 0 3 1 1 2 3 3 3 3 Phospholipase/Carboxylesterase | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:221685-221981 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~221685-221981 PV-1 PF06637.6 g120023.t1 - 0.0012 17.4 3.3 0.0013 17.4 2.3 1 1 0 0 1 1 1 1 PV-1 protein (PLVAP) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:275197-275695 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~275197-275695 DUF2463 PF09591.5 g102420.t1 - 0.052 13.1 0.7 0.069 12.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2463) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:172489-177515 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~172489-177515 zf-met2 PF12907.2 g46269.t1 - 0.011 15.7 2.1 0.024 14.5 1.4 1.7 1 0 0 1 1 1 0 Zinc-binding | Ref_seq=scaffold1064_contigs=7, transcript_loc=scaffold1064_contigs=7:155274-156005 Augustus predicted protein sequence Tobacco scaffold1064_contigs=7~155274-156005 SAND PF01342.16 g113137.t1 - 0.0034 17 0 0.007 16 0 1.5 1 0 0 1 1 1 1 SAND domain | Ref_seq=scaffold2621_contigs=15, transcript_loc=scaffold2621_contigs=15:113677-114571 Augustus predicted protein sequence Tobacco scaffold2621_contigs=15~113677-114571 DUF1682 PF07946.9 g106499.t1 - 0.058 12.2 13.9 0.066 12 9.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) | Ref_seq=scaffold2375_contigs=1, transcript_loc=scaffold2375_contigs=1:83901-84338 Augustus predicted protein sequence Tobacco scaffold2375_contigs=1~83901-84338 YopE_N PF09020.5 g24369.t1 - 0.064 13.2 0 0.11 12.5 0 1.3 1 0 0 1 1 1 0 YopE, N terminal | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:61661-62080 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~61661-62080 DUF2656 PF10847.3 g124099.t1 - 0.013 15.4 0.4 0.017 15 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2656) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1334882-1335548 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1334882-1335548 REV PF00424.13 g112376.t1 - 1.8 8.5 9.5 5.7 6.8 0.8 2.3 2 0 0 2 2 2 0 REV protein (anti-repression trans-activator protein) | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:31158-32470 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~31158-32470 FlxA PF14282.1 g62317.t1 - 0.0091 15.9 3 0.0091 15.9 2.1 2 2 0 0 2 2 2 1 FlxA-like protein | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:423631-423876 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~423631-423876 Radial_spoke_3 PF06098.6 g29536.t1 - 0.033 13.2 3 0.044 12.7 2.1 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:156614-157399 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~156614-157399 DUF466 PF04328.8 g28146.t1 - 0.00037 20.2 0.1 0.37 10.6 0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF466) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:195471-196902 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~195471-196902 GcrA PF07750.6 g7431.t1 - 0.13 12.4 0.2 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 GcrA cell cycle regulator | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:27395-27640 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~27395-27640 UBA_e1_thiolCys PF10585.4 g67314.t1 - 0.002 17.4 0.3 0.0047 16.2 0.1 1.8 2 0 0 2 2 2 1 Ubiquitin-activating enzyme active site | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:16451-18140 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~16451-18140 RVT_3 PF13456.1 g22541.t1 - 0.032 13.9 0 0.043 13.5 0 1.3 1 1 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:47867-48193 Augustus predicted protein sequence Tobacco scaffold623_contigs=13~47867-48193 SDA1 PF05285.7 g98369.t1 - 0.55 9.4 20.5 0.6 9.3 14.2 1.2 1 0 0 1 1 1 0 SDA1 | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:21213-21524 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~21213-21524 BEX PF04538.7 g16174.t1 - 1.6 8.9 6 2.7 8.2 4.1 1.3 1 0 0 1 1 1 0 Brain expressed X-linked like family | Ref_seq=scaffold510_contigs=5, transcript_loc=scaffold510_contigs=5:16222-16710 Augustus predicted protein sequence Tobacco scaffold510_contigs=5~16222-16710 Sec3-PIP2_bind PF15277.1 g91624.t1 - 0.031 14.1 0 0.056 13.3 0 1.4 1 0 0 1 1 1 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:122393-122893 Augustus predicted protein sequence Tobacco scaffold1975_contigs=6~122393-122893 ACCA PF03255.9 g125773.t1 - 0.039 13.5 0.3 0.079 12.5 0.2 1.5 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:107595-108939 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~107595-108939 Adaptin_binding PF10199.4 g42313.t1 - 0.00016 21.9 5.9 0.0002 21.6 4.1 1.2 1 0 0 1 1 1 1 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:23233-23760 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~23233-23760 APS_kinase PF01583.15 g27746.t1 - 0.057 13 0 0.071 12.7 0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:230591-230977 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~230591-230977 YibE_F PF07907.6 g64583.t1 - 0.13 11.3 0 0.14 11.3 0 1 1 0 0 1 1 1 0 YibE/F-like protein | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:14426-14683 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~14426-14683 HSCB_C PF07743.8 g110584.t1 - 0.058 13.8 0.3 0.075 13.5 0.2 1.5 1 1 0 1 1 1 0 HSCB C-terminal oligomerisation domain | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:23861-24133 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~23861-24133 zf-CCHC PF00098.18 g100777.t1 - 0.000038 23.4 1.2 0.000056 22.8 0.8 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:157341-157550 Augustus predicted protein sequence Tobacco scaffold2204_contigs=7~157341-157550 Acyl_CoA_thio PF02551.10 g2475.t1 - 0.094 12.3 0.1 0.54 9.8 0 1.9 2 0 0 2 2 2 0 Acyl-CoA thioesterase | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:86045-88023 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~86045-88023 DUF1676 PF07898.8 g117148.t1 - 0.0076 16.5 1 0.013 15.7 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1676) | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:40665-41237 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~40665-41237 LPP20 PF02169.11 g40054.t1 - 0.07 13.2 0.6 0.094 12.8 0.4 1.2 1 0 0 1 1 1 0 LPP20 lipoprotein | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:334683-335141 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~334683-335141 zf-CCHC PF00098.18 g126234.t1 - 0.00000013 31.2 5.5 0.00000025 30.2 3.8 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:8821-9108 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~8821-9108 RNA_pol_3_Rpc31 PF11705.3 g7254.t1 - 0.69 9.8 5.8 0.69 9.8 4 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:1-204 Augustus predicted protein sequence Tobacco scaffold311_contigs=5~1-204 Flg_hook PF02120.11 g70430.t1 - 0.058 13 0.1 0.39 10.4 0.1 2.1 1 1 0 1 1 1 0 Flagellar hook-length control protein FliK | Ref_seq=scaffold1495_contigs=2, transcript_loc=scaffold1495_contigs=2:12329-12538 Augustus predicted protein sequence Tobacco scaffold1495_contigs=2~12329-12538 RVT_3 PF13456.1 g127846.t1 - 0.0011 18.6 0 0.0016 18.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2839_contigs=1, transcript_loc=scaffold2839_contigs=1:23193-23513 Augustus predicted protein sequence Tobacco scaffold2839_contigs=1~23193-23513 DUF2695 PF10905.3 g110648.t1 - 0.032 13.9 0.1 0.05 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2695) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:162388-162663 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~162388-162663 DUF959 PF06121.9 g96226.t1 - 0.023 14.3 0.1 0.025 14.2 0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF959) | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:164668-164922 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~164668-164922 CENP-B_dimeris PF09026.5 g87542.t1 - 0.026 14.7 7.6 0.049 13.8 5.2 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1884_contigs=4, transcript_loc=scaffold1884_contigs=4:24353-25191 Augustus predicted protein sequence Tobacco scaffold1884_contigs=4~24353-25191 GRP PF07172.6 g120331.t1 - 5.7 7.4 24.8 97 3.5 17.2 2 1 1 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:236945-237283 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~236945-237283 HABP4_PAI-RBP1 PF04774.10 g125988.t1 - 0.11 13 2 0.15 12.5 1.4 1.3 1 0 0 1 1 1 0 Hyaluronan / mRNA binding family | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:20109-20542 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~20109-20542 Use1 PF09753.4 g81346.t1 - 0.064 12.6 0.4 0.078 12.4 0.3 1.1 1 0 0 1 1 1 0 Membrane fusion protein Use1 | Ref_seq=scaffold1729_contigs=8, transcript_loc=scaffold1729_contigs=8:68056-68451 Augustus predicted protein sequence Tobacco scaffold1729_contigs=8~68056-68451 CENP-O PF09496.5 g102568.t1 - 0.009 16.2 0.4 0.023 14.9 0.1 1.6 1 1 0 2 2 2 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:117422-117712 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~117422-117712 Pox_G7 PF05503.7 g124381.t1 - 0.0063 15.1 0.2 0.0068 15 0.1 1 1 0 0 1 1 1 1 Poxvirus G7-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2110486-2110806 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2110486-2110806 PRONE PF03759.8 g7916.t1 - 0.061 11.8 0.2 0.085 11.3 0.2 1.1 1 0 0 1 1 1 0 PRONE (Plant-specific Rop nucleotide exchanger) | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:125530-128436 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~125530-128436 Peptidase_S46 PF10459.4 g24296.t1 - 0.099 11 1 0.11 10.8 0.7 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold669_contigs=3, transcript_loc=scaffold669_contigs=3:67616-67987 Augustus predicted protein sequence Tobacco scaffold669_contigs=3~67616-67987 Herpes_BLRF2 PF05812.7 g114989.t1 - 0.009 15.8 2.4 0.012 15.4 1.7 1.2 1 0 0 1 1 1 1 Herpesvirus BLRF2 protein | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:160220-160675 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~160220-160675 HGWP PF03578.10 g64504.t1 - 0.055 12.7 0.8 0.11 11.8 0.5 1.5 1 0 0 1 1 1 0 HGWP repeat | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:278329-278964 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~278329-278964 SAPS PF04499.10 g17210.t1 - 0.18 10.4 3.2 0.18 10.4 2.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:176363-177505 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~176363-177505 DUF1082 PF06449.6 g27035.t1 - 0.032 14.1 0.3 0.18 11.7 0 2.2 2 0 0 2 2 2 0 Mitochondrial domain of unknown function (DUF1082) | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:780284-780673 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~780284-780673 Med1 PF10744.4 g82607.t1 - 0.037 12.8 0.7 0.035 12.8 0.5 1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription subunit 1 | Ref_seq=scaffold1758_contigs=1, transcript_loc=scaffold1758_contigs=1:3326-4243 Augustus predicted protein sequence Tobacco scaffold1758_contigs=1~3326-4243 HATPase_c_5 PF14501.1 g89637.t1 - 0.079 12.6 0.5 0.11 12.2 0.3 1.2 1 0 0 1 1 1 0 GHKL domain | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:3593-3937 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~3593-3937 ATG19_autophagy PF12744.2 g93055.t1 - 0.084 12.1 1 0.16 11.1 0.1 1.9 1 1 1 2 2 2 0 Autophagy protein Atg19, Atg8-binding | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:612035-614458 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~612035-614458 Gag_p12 PF01141.13 g97479.t1 - 0.029 14.4 0.3 0.055 13.6 0.1 1.5 1 1 1 2 2 2 0 Gag polyprotein, inner coat protein p12 | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:154732-155034 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~154732-155034 F-box PF00646.28 g126642.t1 - 0.095 12.3 0.2 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 F-box domain | Ref_seq=scaffold2801_contigs=1, transcript_loc=scaffold2801_contigs=1:74489-74734 Augustus predicted protein sequence Tobacco scaffold2801_contigs=1~74489-74734 Gly-rich_Ago1 PF12764.2 g53277.t1 - 5.1 7.7 5.9 2 9 1.6 2 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1186_contigs=6, transcript_loc=scaffold1186_contigs=6:159534-160076 Augustus predicted protein sequence Tobacco scaffold1186_contigs=6~159534-160076 IBV_3A PF03617.8 g77464.t1 - 0.0053 16.4 0.4 0.0093 15.6 0.3 1.4 1 0 0 1 1 1 1 IBV 3A protein | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:129787-130056 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~129787-130056 zf-RVT PF13966.1 g89538.t1 - 0.00029 21 0.3 0.00039 20.6 0.2 1.2 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:38730-38963 Augustus predicted protein sequence Tobacco scaffold1949_contigs=5~38730-38963 HCMVantigenic_N PF12154.3 g64209.t1 - 0.062 13.2 0.2 15 5.6 0 2.2 2 0 0 2 2 2 0 Glycoprotein B N-terminal antigenic domain of HCMV | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:136686-137097 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~136686-137097 PSCyt3 PF07627.6 g5298.t1 - 0.18 11.6 1.7 13 5.6 0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:7697-9257 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~7697-9257 DUF1398 PF07166.6 g129347.t1 - 0.044 13.6 0.1 14 5.6 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:8158-9534 Augustus predicted protein sequence Tobacco scaffold2942_contigs=1~8158-9534 EIAV_Rev PF11129.3 g78963.t1 - 0.00093 19.1 1.5 1.1 9.2 0.1 2.2 2 0 0 2 2 2 2 Rev protein of equine infectious anaemia virus | Ref_seq=scaffold1679_contigs=9, transcript_loc=scaffold1679_contigs=9:18849-19478 Augustus predicted protein sequence Tobacco scaffold1679_contigs=9~18849-19478 bZIP_1 PF00170.16 g21325.t1 - 0.86 9.6 4.9 0.51 10.3 1.1 2.1 2 0 0 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:117211-117576 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~117211-117576 DUF383 PF04063.9 g11810.t1 - 0.085 12.3 0 0.093 12.2 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF383) | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:307358-309108 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~307358-309108 zf-BED PF02892.10 g97487.t1 - 0.0034 17.1 0.4 0.0076 15.9 0.3 1.7 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2137_contigs=9, transcript_loc=scaffold2137_contigs=9:210649-211287 Augustus predicted protein sequence Tobacco scaffold2137_contigs=9~210649-211287 Closter_coat PF01785.12 g66108.t1 - 0.034 13.1 0.7 0.046 12.7 0.5 1.3 1 0 0 1 1 1 0 Closterovirus coat protein | Ref_seq=scaffold1433_contigs=7, transcript_loc=scaffold1433_contigs=7:54040-55009 Augustus predicted protein sequence Tobacco scaffold1433_contigs=7~54040-55009 Prefoldin_2 PF01920.15 g81100.t1 - 0.007 16.1 0.1 0.0088 15.7 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:235444-235782 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~235444-235782 DUF4231 PF14015.1 g16701.t1 - 7.1 6.6 8.9 12 5.8 6.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:125808-126110 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~125808-126110 Seryl_tRNA_N PF02403.17 g88290.t1 - 0.29 11.1 6 0.59 10.1 4.1 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain | Ref_seq=scaffold1925_contigs=8, transcript_loc=scaffold1925_contigs=8:17727-18921 Augustus predicted protein sequence Tobacco scaffold1925_contigs=8~17727-18921 PI-PLC-X PF00388.14 g70297.t1 - 0.041 13.2 0 0.062 12.6 0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:248609-248884 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~248609-248884 MOSC PF03473.12 g17315.t1 - 0.07 12.6 0 0.09 12.2 0 1.1 1 0 0 1 1 1 0 MOSC domain | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:131354-131641 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~131354-131641 SapB_1 PF05184.10 g109048.t1 - 0.000000033 33.1 0.4 0.0094 15.7 0 2.2 2 0 0 2 2 2 2 Saposin-like type B, region 1 | Ref_seq=scaffold2475_contigs=3, transcript_loc=scaffold2475_contigs=3:1-1524 Augustus predicted protein sequence Tobacco scaffold2475_contigs=3~1-1524 ATHILA PF03078.10 g67450.t1 - 0.000087 21.2 0 0.00057 18.6 0 1.9 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:290269-290835 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~290269-290835 DUF2126 PF09899.4 g20323.t1 - 8.2 4.3 10 9.1 4.1 6.9 1 1 0 0 1 1 1 0 Putative amidoligase enzyme (DUF2126) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:33835-34710 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~33835-34710 TSC22 PF01166.13 g92320.t1 - 0.016 15.1 4 0.022 14.7 2.3 1.7 2 0 0 2 2 2 0 TSC-22/dip/bun family | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:273598-274914 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~273598-274914 DUF971 PF06155.7 g82701.t1 - 0.05 14 0 0.066 13.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF971) | Ref_seq=scaffold1763_contigs=6, transcript_loc=scaffold1763_contigs=6:16580-18204 Augustus predicted protein sequence Tobacco scaffold1763_contigs=6~16580-18204 RVT_3 PF13456.1 g9822.t1 - 0.0048 16.6 0 0.0054 16.4 0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:113472-113729 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~113472-113729 RVT_3 PF13456.1 g121726.t1 - 0.00014 21.5 1.4 0.02 14.6 0.1 2.2 1 1 1 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:89830-90257 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~89830-90257 LuxC PF05893.9 g45825.t1 - 0.022 13.5 0.3 0.024 13.3 0.2 1 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) | Ref_seq=scaffold1048_contigs=2, transcript_loc=scaffold1048_contigs=2:150623-150895 Augustus predicted protein sequence Tobacco scaffold1048_contigs=2~150623-150895 Robl_LC7 PF03259.12 g69760.t1 - 0.094 12.2 0 0.17 11.4 0 1.4 1 0 0 1 1 1 0 Roadblock/LC7 domain | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:84080-86510 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~84080-86510 RVT_3 PF13456.1 g71671.t1 - 0.003 17.2 0 0.0038 16.9 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:241987-244172 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~241987-244172 Gemini_mov PF01708.11 g125666.t1 - 0.0074 15.8 0 0.014 14.9 0 1.4 1 0 0 1 1 1 1 Geminivirus putative movement protein | Ref_seq=scaffold2778_contigs=1, transcript_loc=scaffold2778_contigs=1:29864-30397 Augustus predicted protein sequence Tobacco scaffold2778_contigs=1~29864-30397 HALZ PF02183.13 g6110.t1 - 0.0021 17.7 12.4 0.024 14.3 1.1 2.5 2 1 1 3 3 3 2 Homeobox associated leucine zipper | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:56900-57249 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~56900-57249 Orthopox_F7 PF05813.7 g26111.t1 - 0.046 13.6 0.1 0.052 13.4 0.1 1.2 1 0 0 1 1 1 0 Orthopoxvirus F7 protein | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:378708-378947 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~378708-378947 DUF241 PF03087.9 g47249.t1 - 0.089 12.2 0.9 0.11 11.9 0.6 1.1 1 0 0 1 1 1 0 Arabidopsis protein of unknown function | Ref_seq=scaffold1091_contigs=17, transcript_loc=scaffold1091_contigs=17:18583-18957 Augustus predicted protein sequence Tobacco scaffold1091_contigs=17~18583-18957 OppC_N PF12911.2 g86098.t1 - 0.14 11.5 1.8 0.24 10.7 1.2 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:171526-173893 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~171526-173893 DUF4219 PF13961.1 g54770.t1 - 0.0000045 25.9 0.3 0.0000045 25.9 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:281386-281664 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~281386-281664 R3H PF01424.17 g106303.t1 - 0.12 12.1 0 0.18 11.5 0 1.3 1 0 0 1 1 1 0 R3H domain | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:128741-129498 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~128741-129498 zf-BED PF02892.10 g29362.t1 - 0.00018 21.1 0.2 0.00032 20.3 0.1 1.4 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold758_contigs=7, transcript_loc=scaffold758_contigs=7:14934-15829 Augustus predicted protein sequence Tobacco scaffold758_contigs=7~14934-15829 HALZ PF02183.13 g76116.t1 - 0.00012 21.6 5.6 0.049 13.3 0.3 2.4 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:239291-240110 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~239291-240110 DUF1297 PF06973.7 g60160.t1 - 0.082 12.2 0 0.098 11.9 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1297) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:119225-119838 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~119225-119838 RVT_3 PF13456.1 g70960.t1 - 0.057 13.2 0.1 0.11 12.3 0 1.5 1 1 1 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:163006-163227 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~163006-163227 E6 PF00518.12 g117776.t1 - 0.12 12.7 0 0.15 12.4 0 1.1 1 0 0 1 1 1 0 Early Protein (E6) | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:72777-73897 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~72777-73897 PLDc_N PF13396.1 g36401.t1 - 0.09 12.4 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Phospholipase_D-nuclease N-terminal | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:69004-70227 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~69004-70227 EFG_II PF14492.1 g128464.t1 - 0.55 10.1 4 0.34 10.7 1 1.8 2 0 0 2 2 2 0 Elongation Factor G, domain II | Ref_seq=scaffold2870_contigs=1, transcript_loc=scaffold2870_contigs=1:19530-20429 Augustus predicted protein sequence Tobacco scaffold2870_contigs=1~19530-20429 LRRNT PF01462.13 g8736.t1 - 0.78 9.2 2.6 1 8.8 0.3 2.1 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:87525-88237 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~87525-88237 ATHILA PF03078.10 g20616.t1 - 0.0000024 26.4 0.5 0.0000027 26.2 0.4 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:556789-557121 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~556789-557121 zf-HC2 PF13490.1 g13858.t1 - 0.11 12.4 0.4 0.3 11 0 1.9 2 0 0 2 2 2 0 Putative zinc-finger | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:208049-208423 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~208049-208423 Mcm10 PF09332.6 g44202.t1 - 0.098 11.9 0.1 0.13 11.6 0.1 1 1 0 0 1 1 1 0 Mcm10 replication factor | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:213154-213966 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~213154-213966 DUF4360 PF14273.1 g5566.t1 - 0.096 12.3 0.7 0.16 11.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4360) | Ref_seq=scaffold280_contigs=12, transcript_loc=scaffold280_contigs=12:349376-352775 Augustus predicted protein sequence Tobacco scaffold280_contigs=12~349376-352775 Bd3614_N PF14442.1 g76372.t1 - 0.028 14.4 0.3 0.039 13.9 0.2 1.2 1 0 0 1 1 1 0 Bd3614-like deaminase N-terminal | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:53122-53544 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~53122-53544 PepSY_TM_2 PF13703.1 g125723.t1 - 0.27 11.4 0.2 0.27 11.4 0.2 1.9 2 1 1 3 3 3 0 PepSY-associated TM helix | Ref_seq=scaffold2779_contigs=1, transcript_loc=scaffold2779_contigs=1:1416-1748 Augustus predicted protein sequence Tobacco scaffold2779_contigs=1~1416-1748 TSGP1 PF07771.6 g111191.t1 - 0.28 11 2.6 0.15 11.9 0.7 1.4 2 0 0 2 2 2 0 Tick salivary peptide group 1 | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:87440-87694 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~87440-87694 ATHILA PF03078.10 g128591.t1 - 0.0041 15.7 0.3 0.0047 15.5 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2876_contigs=1, transcript_loc=scaffold2876_contigs=1:38243-38614 Augustus predicted protein sequence Tobacco scaffold2876_contigs=1~38243-38614 KASH PF10541.4 g66470.t1 - 0.0046 16.7 0.2 4.9 7 0 2.6 2 0 0 2 2 2 2 Nuclear envelope localisation domain | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:177951-179626 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~177951-179626 DUF3540 PF12059.3 g99955.t1 - 0.047 13.3 1.3 0.075 12.6 0.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3540) | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:40403-40696 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~40403-40696 Tachykinin PF02202.11 g98381.t1 - 0.089 12.5 0 0.2 11.4 0 1.6 1 0 0 1 1 1 0 Tachykinin family | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:42143-43035 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~42143-43035 TMF_DNA_bd PF12329.3 g20554.t1 - 0.22 11.3 12.3 0.15 11.8 7.1 1.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:462649-464045 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~462649-464045 Prolamin_like PF05617.6 g98602.t1 - 0.0031 17.5 4.7 0.0041 17.2 3.2 1.3 1 0 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold2162_contigs=10, transcript_loc=scaffold2162_contigs=10:308182-308463 Augustus predicted protein sequence Tobacco scaffold2162_contigs=10~308182-308463 PEARLI-4 PF05278.7 g101388.t1 - 0.0048 16.3 8.2 0.0048 16.3 5.7 1.4 1 1 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:147709-148167 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~147709-148167 DUF4164 PF13747.1 g23883.t1 - 0.068 13.3 0.4 0.11 12.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:285853-286392 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~285853-286392 P4Ha_N PF08336.6 g20590.t1 - 0.036 13.8 1.2 0.043 13.6 0.8 1.1 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:516614-516955 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~516614-516955 Prolamin_like PF05617.6 g43102.t1 - 0.0095 16 1.2 0.018 15.1 0.8 1.5 1 1 0 1 1 1 1 Prolamin-like | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:459773-461242 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~459773-461242 Transposase_28 PF04195.7 g17575.t1 - 0.00023 20.5 0 0.00044 19.6 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold530_contigs=12, transcript_loc=scaffold530_contigs=12:195543-197739 Augustus predicted protein sequence Tobacco scaffold530_contigs=12~195543-197739 L31 PF09784.4 g106861.t1 - 0.038 14 0 9.6 6.3 0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 | Ref_seq=scaffold2379_contigs=10, transcript_loc=scaffold2379_contigs=10:150198-150807 Augustus predicted protein sequence Tobacco scaffold2379_contigs=10~150198-150807 HALZ PF02183.13 g71546.t1 - 0.0066 16.1 6.3 0.6 9.8 0.5 3 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:250382-251248 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~250382-251248 Gln-synt_N PF03951.14 g91781.t1 - 0.17 11.4 0.9 2.6 7.6 0.1 2.6 1 1 1 3 3 3 0 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:112903-113292 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~112903-113292 BTB_2 PF02214.17 g44232.t1 - 0.13 12.5 0.3 0.64 10.2 0 2.3 3 0 0 3 3 3 0 BTB/POZ domain | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:62384-63509 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~62384-63509 ATHILA PF03078.10 g627.t1 - 0.013 14.1 0.1 0.013 14.1 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold36_contigs=4, transcript_loc=scaffold36_contigs=4:45637-45939 Augustus predicted protein sequence Tobacco scaffold36_contigs=4~45637-45939 Peptidase_C97 PF05903.9 g13533.t1 - 0.058 13.1 0 0.058 13.1 0 1.1 1 0 0 1 1 1 0 PPPDE putative peptidase domain | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:12494-12742 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~12494-12742 Cas_Csa5 PF09702.5 g102361.t1 - 0.011 15.8 0.2 0.012 15.7 0.2 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) | Ref_seq=scaffold2245_contigs=4, transcript_loc=scaffold2245_contigs=4:26996-27442 Augustus predicted protein sequence Tobacco scaffold2245_contigs=4~26996-27442 CoiA PF06054.6 g97005.t1 - 0.1 11.4 0.6 0.14 11 0.4 1.3 1 1 0 1 1 1 0 Competence protein CoiA-like family | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:302735-303301 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~302735-303301 ATHILA PF03078.10 g52046.t1 - 0.000088 21.2 0 0.000089 21.2 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:254744-255022 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~254744-255022 Trypan_PARP PF05887.6 g41130.t1 - 0.12 12.2 9.5 0.14 11.9 6.6 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:726500-727864 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~726500-727864 Spore_GerQ PF09671.5 g35517.t1 - 0.15 11.7 0 0.21 11.2 0 1.3 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:266524-266979 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~266524-266979 CALCOCO1 PF07888.6 g109110.t1 - 0.024 12.9 3.3 0.028 12.7 2.3 1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:29171-29569 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~29171-29569 DUF1423 PF07227.6 g89267.t1 - 0.00035 19.3 3.5 0.00042 19 2.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1423) | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:179630-179944 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~179630-179944 Tropomyosin PF00261.15 g31876.t1 - 0.027 13.5 6.4 0.037 13.1 4.4 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:123820-125224 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~123820-125224 YcgR PF07317.7 g40717.t1 - 0.0049 16.5 0.2 0.0053 16.4 0.1 1.1 1 0 0 1 1 1 1 Flagellar regulator YcgR | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:383926-384150 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~383926-384150 RNR_N PF08343.5 g50850.t1 - 0.22 11.3 3.7 0.24 11.2 0.1 2.5 3 0 0 3 3 3 0 Ribonucleotide reductase N-terminal | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:304177-305829 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~304177-305829 DUF690 PF05108.8 g89716.t1 - 0.094 11 0 0.094 11 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF690) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:227265-227486 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~227265-227486 DUF4608 PF15381.1 g120343.t1 - 0.14 12.3 1.2 0.31 11.2 0.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:297499-298271 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~297499-298271 DUF1985 PF09331.6 g61418.t1 - 0.0000026 27.2 1.7 0.00028 20.7 0 2.6 2 1 1 3 3 3 2 Domain of unknown function (DUF1985) | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:60381-61974 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~60381-61974 UPF0731 PF14982.1 g35301.t1 - 0.72 9.8 3.1 5.5 6.9 0.1 2.5 2 1 1 3 3 3 0 UPF0731 family | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:1659-2286 Augustus predicted protein sequence Tobacco scaffold866_contigs=9~1659-2286 DUF2170 PF09938.4 g23249.t1 - 0.046 13 0 0.063 12.6 0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2170) | Ref_seq=scaffold640_contigs=3, transcript_loc=scaffold640_contigs=3:79861-80193 Augustus predicted protein sequence Tobacco scaffold640_contigs=3~79861-80193 ATHILA PF03078.10 g52812.t1 - 0.000000087 31.1 0 0.0000001 30.9 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1181_contigs=35, transcript_loc=scaffold1181_contigs=35:1151849-1153332 Augustus predicted protein sequence Tobacco scaffold1181_contigs=35~1151849-1153332 PaO PF08417.7 g50807.t1 - 0.13 12.2 0 0.14 12 0 1.1 1 0 0 1 1 1 0 Pheophorbide a oxygenase | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:203568-204010 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~203568-204010 LEA_6 PF10714.4 g67989.t1 - 0.16 11.7 1.9 0.23 11.3 1.3 1.2 1 0 0 1 1 1 0 Late embryogenesis abundant protein 18 | Ref_seq=scaffold1464_contigs=11, transcript_loc=scaffold1464_contigs=11:109465-109731 Augustus predicted protein sequence Tobacco scaffold1464_contigs=11~109465-109731 RVT_2 PF07727.9 g75073.t1 - 0.028 13.4 0 0.07 12 0 1.6 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:94477-96399 Augustus predicted protein sequence Tobacco scaffold1566_contigs=4~94477-96399 Tombus_P19 PF03220.8 g67081.t1 - 0.073 12.4 0.3 0.12 11.7 0.1 1.4 1 1 0 1 1 1 0 Tombusvirus P19 core protein | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:496344-496646 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~496344-496646 ATHILA PF03078.10 g91762.t1 - 0.0000056 25.2 0 0.0000076 24.7 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1978_contigs=4, transcript_loc=scaffold1978_contigs=4:65746-67580 Augustus predicted protein sequence Tobacco scaffold1978_contigs=4~65746-67580 WEMBL PF05701.6 g21451.t1 - 0.0024 16.4 6 0.0025 16.3 4.2 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:492845-493381 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~492845-493381 HALZ PF02183.13 g41004.t1 - 1.8 8.3 5.4 1.3 8.8 0.9 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:388689-389431 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~388689-389431 DUF3795 PF12675.2 g92562.t1 - 0.0042 17.2 2 0.0058 16.7 1.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:82499-84384 Augustus predicted protein sequence Tobacco scaffold1993_contigs=21~82499-84384 Lumazine_bd PF12870.2 g77614.t1 - 0.0048 16.9 0.2 0.0071 16.3 0.2 1.3 1 0 0 1 1 1 1 Lumazine-binding domain | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:173260-173878 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~173260-173878 Aldose_epim PF01263.15 g129913.t1 - 0.15 11.1 0 0.19 10.8 0 1.1 1 0 0 1 1 1 0 Aldose 1-epimerase | Ref_seq=scaffold3194_contigs=1, transcript_loc=scaffold3194_contigs=1:2048-2566 Augustus predicted protein sequence Tobacco scaffold3194_contigs=1~2048-2566 Tox-HNH-EHHH PF15657.1 g81536.t1 - 0.22 11.7 0.9 2.1 8.5 0 2.2 2 0 0 2 2 2 0 HNH/Endo VII superfamily nuclease toxins | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:165477-166896 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~165477-166896 TrbE PF11100.3 g61366.t1 - 0.12 12.2 0.6 0.19 11.5 0.4 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:70772-72066 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~70772-72066 Pox_RNA_Pol_19 PF05320.7 g82417.t1 - 0.28 10.9 1.9 0.35 10.6 1.3 1.2 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:457999-458304 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~457999-458304 HsbA PF12296.3 g129701.t1 - 0.019 14.8 0.2 0.036 13.9 0.1 1.4 1 0 0 1 1 1 0 Hydrophobic surface binding protein A | Ref_seq=scaffold3028_contigs=1, transcript_loc=scaffold3028_contigs=1:2000-3509 Augustus predicted protein sequence Tobacco scaffold3028_contigs=1~2000-3509 Chromo PF00385.19 g3545.t1 - 0.042 13.5 0 0.085 12.5 0 1.6 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:130822-132436 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~130822-132436 Phosphoprotein PF00922.12 g94024.t1 - 0.23 10.6 1 0.27 10.4 0.7 1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:425993-426475 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~425993-426475 TPR_MLP1_2 PF07926.7 g56129.t1 - 0.01 15.5 2 0.015 15 1.4 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:118079-118540 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~118079-118540 AFT PF08731.6 g104955.t1 - 0.14 12.3 0.5 0.23 11.6 0.3 1.4 1 1 0 1 1 1 0 Transcription factor AFT | Ref_seq=scaffold2349_contigs=3, transcript_loc=scaffold2349_contigs=3:13576-14176 Augustus predicted protein sequence Tobacco scaffold2349_contigs=3~13576-14176 NUDIX_4 PF14815.1 g28533.t1 - 0.091 12.1 0.1 0.11 11.9 0 1.1 1 0 0 1 1 1 0 NUDIX domain | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:150823-151300 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~150823-151300 Cauli_DNA-bind PF03310.8 g119204.t1 - 0.076 12.8 2 0.14 11.9 1.4 1.5 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:101621-103265 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~101621-103265 Retrotrans_gag PF03732.12 g46798.t1 - 0.0044 17 1.1 0.0065 16.5 0 1.7 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:162225-162640 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~162225-162640 DUF2039 PF10217.4 g28853.t1 - 0.046 13.7 1 0.065 13.2 0.2 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:449496-449948 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~449496-449948 DUF2694 PF10904.3 g123917.t1 - 0.043 13.8 0.1 0.094 12.7 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:896653-897381 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~896653-897381 UBN2 PF14223.1 g71881.t1 - 0.0071 16.1 0 0.0091 15.7 0 1.3 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:11470-11861 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~11470-11861 Noelin-1 PF12308.3 g112432.t1 - 0.066 13 1.9 0.08 12.7 1.3 1.1 1 0 0 1 1 1 0 Neurogenesis glycoprotein | Ref_seq=scaffold2611_contigs=18, transcript_loc=scaffold2611_contigs=18:22514-22777 Augustus predicted protein sequence Tobacco scaffold2611_contigs=18~22514-22777 Med12 PF09497.5 g32953.t1 - 0.12 12.3 0.3 0.61 10.1 0.2 2.1 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:35911-36240 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~35911-36240 bZIP_1 PF00170.16 g45219.t1 - 0.032 14.1 6 0.21 11.5 0.5 2.5 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:95793-96278 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~95793-96278 GRP PF07172.6 g69081.t1 - 0.00001 25.8 45.4 0.00001 25.8 31.5 2.2 1 1 1 2 2 2 1 Glycine rich protein family | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:403812-404992 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~403812-404992 ARL6IP6 PF15062.1 g42014.t1 - 0.056 13.3 0 0.11 12.3 0 1.5 1 0 0 1 1 1 0 Haemopoietic lineage transmembrane helix | Ref_seq=scaffold999_contigs=6, transcript_loc=scaffold999_contigs=6:41399-42301 Augustus predicted protein sequence Tobacco scaffold999_contigs=6~41399-42301 Transposase_28 PF04195.7 g82357.t1 - 0.0026 17 0 0.0043 16.3 0 1.3 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:306065-307419 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~306065-307419 Ral PF11058.3 g59167.t1 - 0.061 12.6 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Antirestriction protein Ral | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:67455-67988 Augustus predicted protein sequence Tobacco scaffold1283_contigs=15~67455-67988 HALZ PF02183.13 g110171.t1 - 0.0058 16.3 4.1 0.0096 15.6 0.4 2.8 1 1 1 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold2528_contigs=2, transcript_loc=scaffold2528_contigs=2:8329-9000 Augustus predicted protein sequence Tobacco scaffold2528_contigs=2~8329-9000 RPW8 PF05659.6 g71809.t1 - 0.00024 20.6 0.1 0.00029 20.3 0.1 1.2 1 0 0 1 1 1 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:146955-147690 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~146955-147690 DUF295 PF03478.13 g25526.t1 - 0.069 12.5 0 0.12 11.7 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF295) | Ref_seq=scaffold698_contigs=2, transcript_loc=scaffold698_contigs=2:64770-65707 Augustus predicted protein sequence Tobacco scaffold698_contigs=2~64770-65707 rve PF00665.21 g52457.t1 - 0.13 12.4 0 0.16 12.1 0 1.2 1 0 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:302204-303204 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~302204-303204 Transposase_21 PF02992.9 g67428.t1 - 0.0083 15.2 0 0.022 13.8 0 1.5 1 1 1 2 2 2 1 Transposase family tnp2 | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:253919-256343 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~253919-256343 Bap31 PF05529.7 g114836.t1 - 2.4 7.5 5.1 3.3 7.1 3.5 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:200821-201609 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~200821-201609 Conotoxin PF02950.12 g91211.t1 - 0.063 14 0.1 0.1 13.4 0 1.4 1 0 0 1 1 1 0 Conotoxin | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:637608-637922 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~637608-637922 DUF258 PF03193.11 g63084.t1 - 0.035 13.2 0.1 0.035 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF258 | Ref_seq=scaffold1366_contigs=6, transcript_loc=scaffold1366_contigs=6:72878-73159 Augustus predicted protein sequence Tobacco scaffold1366_contigs=6~72878-73159 Herpes_BLRF2 PF05812.7 g44637.t1 - 0.0028 17.4 4.2 0.12 12.1 0.4 2.1 1 1 1 2 2 2 2 Herpesvirus BLRF2 protein | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:45640-45999 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~45640-45999 TORC_N PF12884.2 g71294.t1 - 0.039 14.4 0.3 0.072 13.6 0.2 1.4 1 0 0 1 1 1 0 Transducer of regulated CREB activity, N terminus | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:466074-467087 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~466074-467087 DUF948 PF06103.6 g38386.t1 - 0.0017 18.2 0.1 0.0025 17.6 0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:134430-134783 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~134430-134783 DUF3552 PF12072.3 g122187.t1 - 0.095 11.9 2.2 0.12 11.5 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:7589-8292 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~7589-8292 DUF1968 PF09291.5 g129680.t1 - 0.14 11.9 0 0.16 11.7 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1968) | Ref_seq=scaffold3015_contigs=1, transcript_loc=scaffold3015_contigs=1:6539-6790 Augustus predicted protein sequence Tobacco scaffold3015_contigs=1~6539-6790 TraQ PF09679.5 g130341.t1 - 0.0037 17.1 0.2 1 9.3 0 2.5 2 0 0 2 2 2 2 Type-F conjugative transfer system pilin chaperone (TraQ) | Ref_seq=scaffold4092_contigs=1, transcript_loc=scaffold4092_contigs=1:465-935 Augustus predicted protein sequence Tobacco scaffold4092_contigs=1~465-935 DUF1179 PF06678.6 g91828.t1 - 0.046 14 0.1 0.059 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1179) | Ref_seq=scaffold1980_contigs=4, transcript_loc=scaffold1980_contigs=4:16897-17187 Augustus predicted protein sequence Tobacco scaffold1980_contigs=4~16897-17187 DUF1985 PF09331.6 g115618.t1 - 0.075 12.8 0.3 0.1 12.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:798263-799010 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~798263-799010 PADR1 PF08063.7 g76742.t1 - 0.12 11.8 0.6 0.25 10.7 0.4 1.5 1 1 0 1 1 1 0 PADR1 (NUC008) domain | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:119068-119325 Augustus predicted protein sequence Tobacco scaffold1619_contigs=7~119068-119325 DUF2367 PF10164.4 g50548.t1 - 0.024 14.4 0.8 0.027 14.3 0.6 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2367) | Ref_seq=scaffold1141_contigs=11, transcript_loc=scaffold1141_contigs=11:269993-270265 Augustus predicted protein sequence Tobacco scaffold1141_contigs=11~269993-270265 Peptidase_C27 PF05407.7 g59915.t1 - 0.039 13.6 0 0.039 13.6 0 1.1 1 0 0 1 1 1 0 Rubella virus endopeptidase | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:153640-153852 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~153640-153852 DUF2723 PF11028.3 g42102.t1 - 0.077 12.4 0.9 0.6 9.5 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF2723) | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:11509-11982 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~11509-11982 Transposase_28 PF04195.7 g18278.t1 - 0.08 12.2 0 0.14 11.4 0 1.4 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold549_contigs=4, transcript_loc=scaffold549_contigs=4:29406-30177 Augustus predicted protein sequence Tobacco scaffold549_contigs=4~29406-30177 MCM_N PF14551.1 g51833.t1 - 0.091 13.2 0 0.093 13.2 0 1.1 1 0 0 1 1 1 0 MCM N-terminal domain | Ref_seq=scaffold1167_contigs=2, transcript_loc=scaffold1167_contigs=2:36286-36507 Augustus predicted protein sequence Tobacco scaffold1167_contigs=2~36286-36507 DUF4200 PF13863.1 g22733.t1 - 0.0095 15.8 8.7 0.0095 15.8 6 1.4 2 0 0 2 2 1 1 Domain of unknown function (DUF4200) | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:215284-215881 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~215284-215881 Tom22 PF04281.8 g85597.t1 - 0.0067 15.9 0.9 0.0077 15.7 0.6 1.2 1 0 0 1 1 1 1 Mitochondrial import receptor subunit Tom22 | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:151367-151651 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~151367-151651 DivIC PF04977.10 g37721.t1 - 0.002 17.5 4 0.0031 16.9 1 2.2 2 0 0 2 2 2 1 Septum formation initiator | Ref_seq=scaffold928_contigs=4, transcript_loc=scaffold928_contigs=4:270005-271091 Augustus predicted protein sequence Tobacco scaffold928_contigs=4~270005-271091 Clusterin PF01093.12 g72495.t1 - 0.0048 15.7 0.4 0.0073 15.1 0.3 1.3 1 0 0 1 1 1 1 Clusterin | Ref_seq=scaffold1508_contigs=4, transcript_loc=scaffold1508_contigs=4:25858-26431 Augustus predicted protein sequence Tobacco scaffold1508_contigs=4~25858-26431 ImpE PF07024.8 g11458.t1 - 0.13 12.2 0 0.17 11.8 0 1.2 1 0 0 1 1 1 0 ImpE protein | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:33975-34430 Augustus predicted protein sequence Tobacco scaffold408_contigs=6~33975-34430 DUF3381 PF11861.3 g61410.t1 - 0.018 14.5 1.3 0.024 14.1 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3381) | Ref_seq=scaffold1333_contigs=10, transcript_loc=scaffold1333_contigs=10:35049-35986 Augustus predicted protein sequence Tobacco scaffold1333_contigs=10~35049-35986 DUF3245 PF11595.3 g40680.t1 - 0.001 19.3 0.3 0.0013 19 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:276268-276954 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~276268-276954 DUF4611 PF15387.1 g98399.t1 - 0.094 12.8 0.3 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:67399-68474 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~67399-68474 zf-C4pol PF14260.1 g44354.t1 - 0.032 14.2 0.3 0.047 13.7 0.2 1.3 1 0 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:335274-335769 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~335274-335769 NDUF_C2 PF06374.6 g26019.t1 - 0.0021 18 0 0.14 12.1 0 2.2 1 1 1 2 2 2 2 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:285298-290992 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~285298-290992 Tropomyosin PF00261.15 g74331.t1 - 0.012 14.6 2.3 0.016 14.2 1.6 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold1554_contigs=1, transcript_loc=scaffold1554_contigs=1:7416-7724 Augustus predicted protein sequence Tobacco scaffold1554_contigs=1~7416-7724 Polyketide_cyc2 PF10604.4 g61535.t1 - 0.0052 16.9 0.2 0.0058 16.8 0.1 1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport | Ref_seq=scaffold1335_contigs=6, transcript_loc=scaffold1335_contigs=6:57359-57577 Augustus predicted protein sequence Tobacco scaffold1335_contigs=6~57359-57577 Big_3_4 PF13754.1 g124271.t1 - 0.071 13.4 0.4 0.21 11.9 0.3 1.7 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 3) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1786992-1787240 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1786992-1787240 PDDEXK_5 PF11645.3 g61054.t1 - 0.027 14.1 0 0.027 14.1 0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease | Ref_seq=scaffold1326_contigs=8, transcript_loc=scaffold1326_contigs=8:335520-335783 Augustus predicted protein sequence Tobacco scaffold1326_contigs=8~335520-335783 Endotoxin_N PF03945.9 g63489.t1 - 0.027 13.8 0 0.037 13.4 0 1.2 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain | Ref_seq=scaffold1375_contigs=5, transcript_loc=scaffold1375_contigs=5:43806-44393 Augustus predicted protein sequence Tobacco scaffold1375_contigs=5~43806-44393 RNase_H2-Ydr279 PF09468.5 g62253.t1 - 0.14 11.3 7.2 0.14 11.3 5 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:303943-304233 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~303943-304233 F-box-like PF12937.2 g61072.t1 - 0.000000038 32.9 5.2 0.00051 19.7 0.2 3.1 3 0 0 3 3 3 2 F-box-like | Ref_seq=scaffold1327_contigs=1, transcript_loc=scaffold1327_contigs=1:19036-20325 Augustus predicted protein sequence Tobacco scaffold1327_contigs=1~19036-20325 UPF0547 PF10571.4 g8696.t1 - 0.039 13.6 0.1 0.058 13 0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:23007-23494 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~23007-23494 PI3K_1B_p101 PF10486.4 g117028.t1 - 0.06 10.9 5 0.066 10.7 3.4 1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit | Ref_seq=scaffold2679_contigs=24, transcript_loc=scaffold2679_contigs=24:466913-468962 Augustus predicted protein sequence Tobacco scaffold2679_contigs=24~466913-468962 RVT_3 PF13456.1 g73173.t1 - 0.00053 19.7 0 0.00073 19.2 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1531_contigs=12, transcript_loc=scaffold1531_contigs=12:109634-109960 Augustus predicted protein sequence Tobacco scaffold1531_contigs=12~109634-109960 DUF29 PF01724.11 g101542.t1 - 0.0029 17.4 0.2 0.0039 17 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF29 | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:269432-269734 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~269432-269734 DUF2610 PF11020.3 g126226.t1 - 0.05 13.3 0 0.082 12.7 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:90458-90811 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~90458-90811 APG6 PF04111.7 g58726.t1 - 0.0085 15.1 0.9 0.0087 15.1 0.6 1 1 0 0 1 1 1 1 Autophagy protein Apg6 | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:577313-577661 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~577313-577661 NIL PF09383.5 g112016.t1 - 0.0018 17.8 2.2 1.5 8.4 0.1 2.5 2 0 0 2 2 2 2 NIL domain | Ref_seq=scaffold2600_contigs=18, transcript_loc=scaffold2600_contigs=18:72942-73894 Augustus predicted protein sequence Tobacco scaffold2600_contigs=18~72942-73894 Atg14 PF10186.4 g74242.t1 - 0.64 8.9 5 0.69 8.7 3.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold1551_contigs=3, transcript_loc=scaffold1551_contigs=3:61528-61923 Augustus predicted protein sequence Tobacco scaffold1551_contigs=3~61528-61923 PM0188 PF11477.3 g46380.t1 - 0.029 13.1 0.1 0.031 13 0 1.1 1 0 0 1 1 1 0 Sialyltransferase PMO188 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:278388-279785 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~278388-279785 NAM-associated PF14303.1 g97140.t1 - 0.00028 21.2 2.5 0.00031 21 1.8 1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:89456-89686 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~89456-89686 DUF1347 PF07079.6 g120566.t1 - 0.033 12.4 0.1 0.038 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2725_contigs=9, transcript_loc=scaffold2725_contigs=9:242095-242547 Augustus predicted protein sequence Tobacco scaffold2725_contigs=9~242095-242547 CDK5_activator PF03261.10 g56653.t1 - 0.13 11.5 0 0.2 10.9 0 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase 5 activator protein | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:580955-584779 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~580955-584779 Cytadhesin_P30 PF07271.6 g70024.t1 - 0.033 13.4 2 0.04 13.2 1.4 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:101389-101859 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~101389-101859 RE_MamI PF09567.5 g97367.t1 - 0.17 10.8 0.2 0.21 10.5 0.1 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:128368-128697 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~128368-128697 DUF3359 PF11839.3 g64893.t1 - 0.0053 17 1.7 0.0053 17 1.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3359) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:358410-358814 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~358410-358814 Nop14 PF04147.7 g96667.t1 - 8.1 4.2 39.9 10 3.8 27.7 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:104744-105961 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~104744-105961 MRI PF15325.1 g44517.t1 - 0.21 12.5 2 0.24 12.3 1.4 1.2 1 0 0 1 1 1 0 Modulator of retrovirus infection | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:313545-313811 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~313545-313811 PTP_N PF12453.3 g130458.t1 - 1.3 8.7 4.3 3.6 7.3 0.1 3.1 2 1 0 2 2 2 0 Protein tyrosine phosphatase N terminal | Ref_seq=scaffold4589_contigs=1, transcript_loc=scaffold4589_contigs=1:1-778 Augustus predicted protein sequence Tobacco scaffold4589_contigs=1~1-778 Pro-kuma_activ PF09286.6 g88547.t1 - 0.049 13.6 0.1 4.9 7.1 0 2.1 1 1 1 2 2 2 0 Pro-kumamolisin, activation domain | Ref_seq=scaffold1930_contigs=25, transcript_loc=scaffold1930_contigs=25:9599-10321 Augustus predicted protein sequence Tobacco scaffold1930_contigs=25~9599-10321 DUF972 PF06156.8 g80648.t1 - 0.064 13.6 5 0.092 13 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:30533-30814 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~30533-30814 DUF3060 PF11259.3 g70270.t1 - 0.0051 16.4 0.1 0.26 10.9 0 2.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3060) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:190969-191229 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~190969-191229 DUF1018 PF06252.7 g115508.t1 - 0.1 13.1 0 0.11 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1018) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:530506-530796 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~530506-530796 Cupin_2 PF07883.6 g14011.t1 - 0.098 12.1 0.3 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 Cupin domain | Ref_seq=scaffold459_contigs=2, transcript_loc=scaffold459_contigs=2:6414-6686 Augustus predicted protein sequence Tobacco scaffold459_contigs=2~6414-6686 RunxI PF08504.6 g9193.t1 - 0.059 13.8 0.3 0.11 12.9 0.2 1.4 1 0 0 1 1 1 0 Runx inhibition domain | Ref_seq=scaffold353_contigs=4, transcript_loc=scaffold353_contigs=4:155782-156564 Augustus predicted protein sequence Tobacco scaffold353_contigs=4~155782-156564 VanZ PF04892.7 g24688.t1 - 0.0093 15.9 1.3 0.011 15.6 0.7 1.3 1 1 0 1 1 1 1 VanZ like family | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:22447-22806 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~22447-22806 BNIP3 PF06553.7 g95003.t1 - 0.4 10 1.9 9.3 5.5 1.3 2.2 1 1 0 1 1 1 0 BNIP3 | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:95896-96240 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~95896-96240 DUF605 PF04652.11 g52400.t1 - 0.89 8.8 4.5 0.9 8.8 3.1 1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:168749-168997 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~168749-168997 DUF1682 PF07946.9 g38511.t1 - 0.0099 14.7 3.2 0.011 14.5 2.2 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:113216-113602 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~113216-113602 Antimicrobial_6 PF08036.6 g89921.t1 - 5.9 6.7 8.1 0.23 11.2 1.1 2 2 0 0 2 2 2 0 Diapausin family of antimicrobial peptide | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:43678-44807 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~43678-44807 Phage-tail_2 PF09096.5 g35869.t1 - 0.03 13.9 0 0.041 13.5 0 1.2 1 0 0 1 1 1 0 Baseplate structural protein, domain 2 | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:692804-695478 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~692804-695478 DUF2732 PF10809.3 g114825.t1 - 0.092 12.3 0.4 0.14 11.7 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2732) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:184616-184933 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~184616-184933 DUF2826 PF11442.3 g34710.t1 - 0.25 11 3 0.39 10.3 2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2826) | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:145482-146421 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~145482-146421 zf-BED PF02892.10 g57732.t1 - 0.019 14.7 2 0.047 13.4 1.4 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1258_contigs=3, transcript_loc=scaffold1258_contigs=3:40408-41354 Augustus predicted protein sequence Tobacco scaffold1258_contigs=3~40408-41354 DUF2367 PF10164.4 g129352.t1 - 0.04 13.7 3.2 0.046 13.5 2.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2367) | Ref_seq=scaffold2942_contigs=1, transcript_loc=scaffold2942_contigs=1:14070-14342 Augustus predicted protein sequence Tobacco scaffold2942_contigs=1~14070-14342 ATHILA PF03078.10 g1923.t1 - 0.00018 20.2 0 0.00022 19.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold197_contigs=2, transcript_loc=scaffold197_contigs=2:21926-23618 Augustus predicted protein sequence Tobacco scaffold197_contigs=2~21926-23618 zf-ribbon_3 PF13248.1 g89640.t1 - 0.063 12.5 0.1 12 5.3 0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:18933-19621 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~18933-19621 Ery_res_leader2 PF08057.6 g7628.t1 - 0.2 11.8 1.4 0.47 10.6 0.9 1.6 1 0 0 1 1 1 0 Erythromycin resistance leader peptide | Ref_seq=scaffold315_contigs=11, transcript_loc=scaffold315_contigs=11:501999-503092 Augustus predicted protein sequence Tobacco scaffold315_contigs=11~501999-503092 MutL_C PF08676.6 g118033.t1 - 0.045 13.3 0 0.047 13.2 0 1.1 1 0 0 1 1 1 0 MutL C terminal dimerisation domain | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:82381-82653 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~82381-82653 zf-CCHC PF00098.18 g40999.t1 - 0.0018 18.1 1.8 0.0037 17.1 1.2 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:368508-368900 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~368508-368900 TLP-20 PF06088.6 g35127.t1 - 0.4 10.3 3.2 0.5 10 2.2 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:80103-80426 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~80103-80426 DUF965 PF06135.7 g8447.t1 - 0.03 14.3 0 0.035 14.1 0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF965) | Ref_seq=scaffold337_contigs=4, transcript_loc=scaffold337_contigs=4:102504-102704 Augustus predicted protein sequence Tobacco scaffold337_contigs=4~102504-102704 NHL PF01436.16 g115076.t1 - 0.0027 17.5 0.9 1.6 8.8 0.1 2.4 2 0 0 2 2 2 2 NHL repeat | Ref_seq=scaffold2658_contigs=12, transcript_loc=scaffold2658_contigs=12:9746-10661 Augustus predicted protein sequence Tobacco scaffold2658_contigs=12~9746-10661 Daxx PF03344.10 g83564.t1 - 0.42 9 10.9 0.48 8.8 7.6 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:98583-99004 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~98583-99004 zf-RING_2 PF13639.1 g12790.t1 - 1.2E-012 47.4 14.4 0.0000048 26.2 2.3 2.6 2 0 0 2 2 2 2 Ring finger domain | Ref_seq=scaffold430_contigs=3, transcript_loc=scaffold430_contigs=3:37884-39023 Augustus predicted protein sequence Tobacco scaffold430_contigs=3~37884-39023 WEMBL PF05701.6 g44115.t1 - 0.004 15.6 10.8 0.18 10.1 0.3 2 1 1 1 2 2 2 2 Weak chloroplast movement under blue light | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:39874-40260 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~39874-40260 DUF2761 PF10959.3 g21248.t1 - 0.14 11.7 0.1 0.28 10.8 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2761) | Ref_seq=scaffold588_contigs=2, transcript_loc=scaffold588_contigs=2:70128-71823 Augustus predicted protein sequence Tobacco scaffold588_contigs=2~70128-71823 zf-BED PF02892.10 g59602.t1 - 0.044 13.5 1.9 0.11 12.2 1.3 1.6 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold1294_contigs=7, transcript_loc=scaffold1294_contigs=7:99564-103881 Augustus predicted protein sequence Tobacco scaffold1294_contigs=7~99564-103881 Isy1 PF06246.7 g7300.t1 - 0.00017 21 5 0.00019 20.9 3.5 1 1 0 0 1 1 1 1 Isy1-like splicing family | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:140020-140343 Augustus predicted protein sequence Tobacco scaffold311_contigs=5~140020-140343 DUF4262 PF14081.1 g130291.t1 - 0.00065 19.8 0 1.5 8.9 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4262) | Ref_seq=scaffold3945_contigs=1, transcript_loc=scaffold3945_contigs=1:765-1327 Augustus predicted protein sequence Tobacco scaffold3945_contigs=1~765-1327 Abi_2 PF07751.6 g48714.t1 - 0.064 13.4 0 0.064 13.4 0 1.1 1 0 0 1 1 1 0 Abi-like protein | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:196532-196750 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~196532-196750 zf-CCHC_3 PF13917.1 g51118.t1 - 0.00056 19.5 0.1 0.00056 19.5 0.1 2.3 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:141861-142202 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~141861-142202 Fer4_NifH PF00142.13 g120881.t1 - 0.093 11.8 0 0.1 11.7 0 1 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family | Ref_seq=scaffold2730_contigs=9, transcript_loc=scaffold2730_contigs=9:29568-30584 Augustus predicted protein sequence Tobacco scaffold2730_contigs=9~29568-30584 Minor_capsid_3 PF12691.2 g9603.t1 - 0.071 12.8 0.4 0.096 12.3 0.2 1.1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:109853-110116 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~109853-110116 EFP_N PF08207.7 g74897.t1 - 0.028 14.2 0 0.052 13.4 0 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:2083-2421 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~2083-2421 Transposase_24 PF03004.9 g115548.t1 - 0.000047 23.3 0.1 0.000047 23.3 0.1 1.7 2 0 0 2 2 2 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:624352-625764 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~624352-625764 Spore_GerAC PF05504.6 g99010.t1 - 0.0078 16 0.2 0.012 15.4 0.1 1.2 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:187689-190645 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~187689-190645 ATHILA PF03078.10 g42161.t1 - 0.011 14.3 0 0.012 14.2 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:175420-175668 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~175420-175668 Transposase_28 PF04195.7 g39555.t1 - 0.000035 23.1 0.1 0.000039 23 0 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:55887-56195 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~55887-56195 RVT_3 PF13456.1 g55011.t1 - 0.016 14.9 0 0.017 14.8 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:348048-349045 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~348048-349045 GVQW PF13900.1 g10093.t1 - 0.16 12 2.4 0.5 10.3 1.6 1.9 1 1 0 1 1 1 0 Putative binding domain | Ref_seq=scaffold383_contigs=3, transcript_loc=scaffold383_contigs=3:99205-99591 Augustus predicted protein sequence Tobacco scaffold383_contigs=3~99205-99591 DUF3305 PF11749.3 g110168.t1 - 0.059 13.2 0 0.086 12.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3305) | Ref_seq=scaffold2528_contigs=2, transcript_loc=scaffold2528_contigs=2:3072-3690 Augustus predicted protein sequence Tobacco scaffold2528_contigs=2~3072-3690 zf-CCHC_3 PF13917.1 g44340.t1 - 0.0029 17.3 0.1 0.0047 16.6 0.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:299587-300057 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~299587-300057 ATHILA PF03078.10 g124574.t1 - 0.073 11.6 0.2 0.091 11.3 0.1 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:58534-59308 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~58534-59308 Capsid-VNN PF11729.3 g4468.t1 - 0.061 12.2 0 0.069 12.1 0 1.1 1 0 0 1 1 1 0 nodavirus capsid protein | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:270289-270573 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~270289-270573 PolyA_pol PF01743.15 g71626.t1 - 0.15 12.2 0.3 0.15 12.2 0.2 1 1 0 0 1 1 1 0 Poly A polymerase head domain | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:188355-188591 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~188355-188591 Tup_N PF08581.5 g104589.t1 - 0.096 12.8 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 Tup N-terminal | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:117532-117927 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~117532-117927 EBV-NA3 PF05009.7 g61127.t1 - 0.33 10.1 1.3 0.35 10 0.9 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:105361-105588 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~105361-105588 THDPS_N_2 PF14805.1 g129258.t1 - 0.096 12.5 0.5 0.3 10.9 0.2 1.8 1 1 1 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal | Ref_seq=scaffold2932_contigs=1, transcript_loc=scaffold2932_contigs=1:18280-18582 Augustus predicted protein sequence Tobacco scaffold2932_contigs=1~18280-18582 CPSF100_C PF13299.1 g106687.t1 - 0.097 12.8 0 0.1 12.7 0 1.1 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:358557-359644 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~358557-359644 Herpes_UL79 PF03049.9 g60758.t1 - 0.015 14.3 0.2 0.016 14.2 0.1 1.1 1 0 0 1 1 1 0 UL79 family | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:111331-111642 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~111331-111642 Gifsy-2 PF13856.1 g102756.t1 - 0.053 13.6 0 0.068 13.3 0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:236537-236791 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~236537-236791 OAD_gamma PF04277.8 g52366.t1 - 0.1 12.9 0.9 0.24 11.7 0.6 1.6 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:106526-107750 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~106526-107750 GAS PF13851.1 g1436.t1 - 0.041 13 2.3 0.049 12.8 1.6 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:113294-113683 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~113294-113683 Apq12 PF12716.2 g107309.t1 - 0.0068 16 0.1 4.4 7 0 2.2 2 0 0 2 2 2 2 Nuclear pore assembly and biogenesis | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1128097-1128675 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1128097-1128675 zf-HC5HC2H PF13771.1 g407.t1 - 0.0039 17.2 0.3 0.0049 16.9 0.2 1.2 1 0 0 1 1 1 1 PHD-like zinc-binding domain | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:90791-93099 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~90791-93099 CAV_VP3 PF04771.7 g57474.t1 - 0.39 10.7 3.2 0.19 11.6 0.4 1.9 2 0 0 2 2 2 0 Chicken anaemia virus VP-3 protein | Ref_seq=scaffold1250_contigs=10, transcript_loc=scaffold1250_contigs=10:252474-253921 Augustus predicted protein sequence Tobacco scaffold1250_contigs=10~252474-253921 zf-CCHC PF00098.18 g41133.t1 - 0.000056 22.8 0.4 0.00014 21.6 0.3 1.7 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:728785-729210 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~728785-729210 Toxin_4 PF00706.12 g59404.t1 - 0.042 14 0.4 0.11 12.7 0.1 1.7 2 0 0 2 2 2 0 Anenome neurotoxin | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:61671-61985 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~61671-61985 DUF632 PF04782.7 g3042.t1 - 0.017 14.2 1.8 0.022 13.8 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF632) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:195034-195857 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~195034-195857 IncA PF04156.9 g74312.t1 - 0.019 14.5 11.1 0.03 13.9 7.7 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:167100-167594 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~167100-167594 Flu_PB1 PF00602.12 g79867.t1 - 0.061 11 0.4 0.06 11 0.3 1 1 0 0 1 1 1 0 Influenza RNA-dependent RNA polymerase subunit PB1 | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:66199-66928 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~66199-66928 CENP-R PF06729.7 g36267.t1 - 0.11 12.1 4.6 0.09 12.4 2 1.7 1 1 1 2 2 2 0 Kinetochore component, CENP-R | Ref_seq=scaffold881_contigs=4, transcript_loc=scaffold881_contigs=4:3582-3968 Augustus predicted protein sequence Tobacco scaffold881_contigs=4~3582-3968 TP2 PF01254.13 g29896.t1 - 0.069 13.4 7.7 0.034 14.4 3.5 1.7 2 0 0 2 2 2 0 Nuclear transition protein 2 | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:353028-353709 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~353028-353709 BNIP3 PF06553.7 g4178.t1 - 0.16 11.3 0.7 0.18 11.1 0.5 1.2 1 0 0 1 1 1 0 BNIP3 | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:50410-50712 Augustus predicted protein sequence Tobacco scaffold254_contigs=6~50410-50712 GAS PF13851.1 g26576.t1 - 0.011 14.9 8.2 0.015 14.4 5.7 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding | Ref_seq=scaffold717_contigs=7, transcript_loc=scaffold717_contigs=7:173223-173699 Augustus predicted protein sequence Tobacco scaffold717_contigs=7~173223-173699 ATHILA PF03078.10 g95134.t1 - 0.0043 15.6 0 0.0049 15.5 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:188389-188667 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~188389-188667 ABC2_membrane_3 PF12698.2 g25392.t1 - 0.0084 15.1 0.2 0.013 14.5 0.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:192894-196155 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~192894-196155 DUF2331 PF10093.4 g113701.t1 - 0.061 12 0 0.095 11.4 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2331) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:231414-232586 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~231414-232586 bZIP_1 PF00170.16 g74680.t1 - 1.4 8.9 6.9 5.4 7 0.8 2.6 1 1 1 2 2 2 0 bZIP transcription factor | Ref_seq=scaffold1562_contigs=2, transcript_loc=scaffold1562_contigs=2:74877-75626 Augustus predicted protein sequence Tobacco scaffold1562_contigs=2~74877-75626 AAA_18 PF13238.1 g55929.t1 - 0.0024 18.1 0.2 0.0091 16.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:141303-141701 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~141303-141701 Dscam_C PF12355.3 g112641.t1 - 0.012 15.8 2.2 0.018 15.3 1.5 1.3 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold2614_contigs=14, transcript_loc=scaffold2614_contigs=14:6314-6737 Augustus predicted protein sequence Tobacco scaffold2614_contigs=14~6314-6737 Phage_RpbA PF10789.4 g65608.t1 - 0.061 13.1 0.1 0.071 12.9 0.1 1.1 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA | Ref_seq=scaffold1420_contigs=9, transcript_loc=scaffold1420_contigs=9:82220-82990 Augustus predicted protein sequence Tobacco scaffold1420_contigs=9~82220-82990 PADR1 PF08063.7 g48246.t1 - 0.25 10.7 0.2 0.25 10.7 0.2 1.9 3 0 0 3 3 3 0 PADR1 (NUC008) domain | Ref_seq=scaffold1106_contigs=3, transcript_loc=scaffold1106_contigs=3:32284-32577 Augustus predicted protein sequence Tobacco scaffold1106_contigs=3~32284-32577 Dodecin PF07311.7 g93338.t1 - 0.049 13.6 3.7 0.97 9.5 0.8 2.6 2 1 0 2 2 2 0 Dodecin | Ref_seq=scaffold2015_contigs=7, transcript_loc=scaffold2015_contigs=7:80162-80661 Augustus predicted protein sequence Tobacco scaffold2015_contigs=7~80162-80661 PBP_sp32 PF07222.7 g107610.t1 - 0.036 13.2 1.4 0.042 13 1 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:68566-69324 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~68566-69324 zf-CCHC PF00098.18 g122249.t1 - 0.0034 17.2 0.6 0.0034 17.2 0.4 2.3 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:160740-161102 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~160740-161102 Kinetocho_Slk19 PF12709.2 g44999.t1 - 0.014 15.4 0.7 0.014 15.4 0.5 1.5 2 0 0 2 2 2 0 Central kinetochore-associated | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:179287-179610 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~179287-179610 Strep_SA_rep PF06696.6 g83374.t1 - 0.084 12.6 0.2 5.3 6.9 0 2.2 2 0 0 2 2 2 0 Streptococcal surface antigen repeat | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:49104-49657 Augustus predicted protein sequence Tobacco scaffold1791_contigs=14~49104-49657 YhdB PF14148.1 g93216.t1 - 0.12 12.1 0 0.15 11.8 0 1.2 1 0 0 1 1 1 0 YhdB-like protein | Ref_seq=scaffold2011_contigs=8, transcript_loc=scaffold2011_contigs=8:111605-111892 Augustus predicted protein sequence Tobacco scaffold2011_contigs=8~111605-111892 DUF4172 PF13776.1 g586.t1 - 0.081 13 2.6 0.67 10 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold31_contigs=1, transcript_loc=scaffold31_contigs=1:22546-23127 Augustus predicted protein sequence Tobacco scaffold31_contigs=1~22546-23127 DUF3302 PF11742.3 g18750.t1 - 0.0044 16.8 0.1 0.0076 16 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3302) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:654866-655222 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~654866-655222 HTH_8 PF02954.14 g1057.t1 - 0.046 13.2 0.1 0.17 11.4 0.1 2 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:195537-195884 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~195537-195884 Chlam_PMP PF02415.12 g104924.t1 - 0.048 13.9 0 15 6 0 2.5 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:103672-104586 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~103672-104586 Tnp_DNA_bind PF14706.1 g114140.t1 - 0.032 13.9 1.6 6.3 6.5 0 2.7 3 0 0 3 3 3 0 Transposase DNA-binding | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:30947-31828 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~30947-31828 DUF4581 PF15167.1 g21157.t1 - 0.069 13 0 0.076 12.9 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4581) | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:95346-95684 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~95346-95684 DUF3093 PF11292.3 g81012.t1 - 0.052 13.3 0 0.067 12.9 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) | Ref_seq=scaffold1723_contigs=7, transcript_loc=scaffold1723_contigs=7:23414-24435 Augustus predicted protein sequence Tobacco scaffold1723_contigs=7~23414-24435 RVT_3 PF13456.1 g48585.t1 - 0.014 15.1 0 0.026 14.2 0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1069836-1070318 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~1069836-1070318 RHIM PF12721.2 g67313.t1 - 0.22 11.9 2.3 0.41 11 1.6 1.4 1 0 0 1 1 1 0 RIP homotypic interaction motif | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:14992-15462 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~14992-15462 Sugarporin_N PF11471.3 g25261.t1 - 0.056 13 0.4 0.084 12.5 0.3 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold691_contigs=5, transcript_loc=scaffold691_contigs=5:31648-31884 Augustus predicted protein sequence Tobacco scaffold691_contigs=5~31648-31884 DUF1025 PF06262.6 g122210.t1 - 0.028 14.2 0 0.028 14.1 0 1.1 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:72398-73666 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~72398-73666 HSBP1 PF06825.7 g36370.t1 - 0.003 17.1 0 0.3 10.6 0.5 2.3 1 1 1 2 2 2 1 Heat shock factor binding protein 1 | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:15994-16359 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~15994-16359 GARS_C PF02843.11 g75102.t1 - 0.036 14.2 0.3 1.9 8.7 0 2.1 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain | Ref_seq=scaffold1567_contigs=2, transcript_loc=scaffold1567_contigs=2:1-406 Augustus predicted protein sequence Tobacco scaffold1567_contigs=2~1-406 Glyco_transf_15 PF01793.11 g80825.t1 - 0.049 12.5 0 0.05 12.5 0 1 1 0 0 1 1 1 0 Glycolipid 2-alpha-mannosyltransferase | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:121572-121811 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~121572-121811 EndIII_4Fe-2S PF10576.4 g118019.t1 - 0.062 13.5 0.8 5.4 7.3 0.1 2.7 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:59090-59545 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~59090-59545 PhoQ_Sensor PF08918.5 g96817.t1 - 1.4 8.4 3.1 0.4 10.1 0.5 1.3 2 0 0 2 2 2 0 PhoQ Sensor | Ref_seq=scaffold2122_contigs=11, transcript_loc=scaffold2122_contigs=11:31341-31547 Augustus predicted protein sequence Tobacco scaffold2122_contigs=11~31341-31547 DUF640 PF04852.7 g102517.t1 - 0.0003 20.9 0 0.27 11.4 0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF640) | Ref_seq=scaffold2253_contigs=17, transcript_loc=scaffold2253_contigs=17:92880-93690 Augustus predicted protein sequence Tobacco scaffold2253_contigs=17~92880-93690 zf-CCHC PF00098.18 g98256.t1 - 0.0065 16.3 2.2 0.0098 15.7 1.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:21841-22191 Augustus predicted protein sequence Tobacco scaffold2156_contigs=2~21841-22191 LCE PF14672.1 g23839.t1 - 0.095 13.1 0 0.12 12.8 0 1.1 1 0 0 1 1 1 0 Late cornified envelope | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:198086-198455 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~198086-198455 DUF538 PF04398.7 g129692.t1 - 0.095 12.9 0 0.14 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF538 | Ref_seq=scaffold3022_contigs=1, transcript_loc=scaffold3022_contigs=1:1811-2257 Augustus predicted protein sequence Tobacco scaffold3022_contigs=1~1811-2257 DUF3678 PF12435.3 g96625.t1 - 2.7 7.6 0 2.7 7.6 0 3.5 4 1 1 5 5 5 0 Protein of unknown function (DUF3678) | Ref_seq=scaffold2118_contigs=7, transcript_loc=scaffold2118_contigs=7:77482-77760 Augustus predicted protein sequence Tobacco scaffold2118_contigs=7~77482-77760 Phage_T7_Capsid PF05396.6 g5457.t1 - 0.1 12.7 0 0.13 12.4 0 1.2 1 0 0 1 1 1 0 Phage T7 capsid assembly protein | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:106648-108497 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~106648-108497 DBD_Tnp_Mut PF03108.10 g78828.t1 - 0.00000018 30.5 0 0.00000023 30.2 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:39749-40260 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~39749-40260 F420_oxidored PF03807.12 g71571.t1 - 0.066 13.6 0 1.2 9.5 0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:46762-47574 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~46762-47574 Toprim_C_rpt PF13368.1 g74934.t1 - 0.59 10.6 4 5.5 7.5 1.3 2.6 1 1 2 3 3 3 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold1565_contigs=6, transcript_loc=scaffold1565_contigs=6:132776-133015 Augustus predicted protein sequence Tobacco scaffold1565_contigs=6~132776-133015 Period_C PF12114.3 g114124.t1 - 0.56 9.7 5.1 5.6 6.5 0.2 2.1 2 0 0 2 2 2 0 Period protein 2/3C-terminal region | Ref_seq=scaffold2642_contigs=12, transcript_loc=scaffold2642_contigs=12:1-727 Augustus predicted protein sequence Tobacco scaffold2642_contigs=12~1-727 zf-TFIIIC PF12660.2 g79620.t1 - 0.17 11.8 0.7 0.22 11.4 0.5 1.4 1 1 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex | Ref_seq=scaffold1699_contigs=9, transcript_loc=scaffold1699_contigs=9:246033-246320 Augustus predicted protein sequence Tobacco scaffold1699_contigs=9~246033-246320 Bestrophin PF01062.16 g96751.t1 - 0.049 12.5 0 0.063 12.2 0 1.1 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:310078-310389 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~310078-310389 Afi1 PF07792.7 g124648.t1 - 0.11 12.5 5.1 0.17 11.8 3.5 1.3 1 0 0 1 1 1 0 Docking domain of Afi1 for Arf3 in vesicle trafficking | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:194487-195617 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~194487-195617 Amastin PF07344.6 g11060.t1 - 0.004 16.7 0 0.75 9.3 0 2 1 1 1 2 2 2 2 Amastin surface glycoprotein | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:68899-69585 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~68899-69585 PMD PF10536.4 g53121.t1 - 0.048 12.6 0.3 0.047 12.6 0.2 1 1 0 0 1 1 1 0 Plant mobile domain | Ref_seq=scaffold1184_contigs=2, transcript_loc=scaffold1184_contigs=2:100544-100825 Augustus predicted protein sequence Tobacco scaffold1184_contigs=2~100544-100825 RVT_1 PF00078.22 g127916.t1 - 0.015 14.6 0 0.024 14 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:55072-57096 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~55072-57096 Luteo_Vpg PF01659.11 g11836.t1 - 0.063 12.9 1.2 0.15 11.7 0.8 1.7 1 1 0 1 1 1 0 Luteovirus putative VPg genome linked protein | Ref_seq=scaffold414_contigs=3, transcript_loc=scaffold414_contigs=3:40742-42429 Augustus predicted protein sequence Tobacco scaffold414_contigs=3~40742-42429 Chitin_bind_1 PF00187.14 g113927.t1 - 0.15 12.1 0.3 0.15 12.1 0.2 1.9 2 1 0 2 2 2 0 Chitin recognition protein | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:759232-760327 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~759232-760327 DUF913 PF06025.7 g108484.t1 - 0.31 9.7 3.4 0.34 9.6 2.4 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:578443-578868 Augustus predicted protein sequence Tobacco scaffold2444_contigs=49~578443-578868 DUF4433 PF14487.1 g4495.t1 - 0.014 15.1 0 0.017 14.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4433) | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:330503-331025 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~330503-331025 Peptidase_S49 PF01343.13 g55485.t1 - 0.0087 15.8 0.1 0.011 15.5 0.1 1.1 1 0 0 1 1 1 1 Peptidase family S49 | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:255096-256555 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~255096-256555 ATG16 PF08614.6 g78782.t1 - 0.17 11.6 5.4 0.24 11.1 3.8 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) | Ref_seq=scaffold1672_contigs=4, transcript_loc=scaffold1672_contigs=4:142508-144130 Augustus predicted protein sequence Tobacco scaffold1672_contigs=4~142508-144130 EFG_C PF00679.19 g99972.t1 - 0.059 13.2 0 0.085 12.7 0 1.2 1 0 0 1 1 1 0 Elongation factor G C-terminus | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:101170-101436 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~101170-101436 DUF1499 PF07386.6 g64925.t1 - 0.048 13.8 0 0.048 13.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1499) | Ref_seq=scaffold1393_contigs=3, transcript_loc=scaffold1393_contigs=3:6707-7201 Augustus predicted protein sequence Tobacco scaffold1393_contigs=3~6707-7201 Pheromone PF08015.6 g98263.t1 - 0.7 10.7 9.5 13 6.7 0.4 3.3 1 1 2 3 3 3 0 Fungal mating-type pheromone | Ref_seq=scaffold2156_contigs=2, transcript_loc=scaffold2156_contigs=2:29373-29837 Augustus predicted protein sequence Tobacco scaffold2156_contigs=2~29373-29837 NST1 PF13945.1 g51091.t1 - 0.083 12.9 0 0.098 12.7 0 1.2 1 0 0 1 1 1 0 Salt tolerance down-regulator | Ref_seq=scaffold1150_contigs=3, transcript_loc=scaffold1150_contigs=3:77068-77439 Augustus predicted protein sequence Tobacco scaffold1150_contigs=3~77068-77439 F-box-like_2 PF13013.1 g72692.t1 - 0.056 13.1 0 0.06 13 0 1.1 1 0 0 1 1 1 0 F-box-like domain | Ref_seq=scaffold1518_contigs=7, transcript_loc=scaffold1518_contigs=7:7370-7597 Augustus predicted protein sequence Tobacco scaffold1518_contigs=7~7370-7597 Dimer_Tnp_Tn5 PF02281.11 g60266.t1 - 0.005 16.9 0 0.0076 16.3 0 1.3 1 0 0 1 1 1 1 Transposase Tn5 dimerisation domain | Ref_seq=scaffold1304_contigs=4, transcript_loc=scaffold1304_contigs=4:61825-64672 Augustus predicted protein sequence Tobacco scaffold1304_contigs=4~61825-64672 Chal_sti_synt_N PF00195.14 g103939.t1 - 0.1 11.8 0 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Chalcone and stilbene synthases, N-terminal domain | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:46369-46710 Augustus predicted protein sequence Tobacco scaffold2321_contigs=13~46369-46710 Hpt PF01627.18 g81733.t1 - 0.018 15 0 0.036 14 0 1.5 1 1 0 1 1 1 0 Hpt domain | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:65378-65755 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~65378-65755 CENP-B_dimeris PF09026.5 g43118.t1 - 0.035 14.3 5.1 0.057 13.6 3.6 1.3 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1012_contigs=21, transcript_loc=scaffold1012_contigs=21:537533-541372 Augustus predicted protein sequence Tobacco scaffold1012_contigs=21~537533-541372 DUF4219 PF13961.1 g46577.t1 - 0.0000017 27.2 0.2 0.0000025 26.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1071_contigs=7, transcript_loc=scaffold1071_contigs=7:193904-194122 Augustus predicted protein sequence Tobacco scaffold1071_contigs=7~193904-194122 Pax2_C PF12403.3 g119458.t1 - 0.089 12.4 0 0.15 11.7 0 1.4 1 0 0 1 1 1 0 Paired-box protein 2 C terminal | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:92429-93569 Augustus predicted protein sequence Tobacco scaffold2712_contigs=5~92429-93569 Neisseria_TspB PF05616.8 g86074.t1 - 0.13 10.6 3.7 0.14 10.5 2.6 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:131096-131655 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~131096-131655 Cas_Csa4 PF09703.5 g21329.t1 - 0.014 14.3 0 0.017 14.1 0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa4) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:139082-139634 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~139082-139634 Retrotrans_gag PF03732.12 g54216.t1 - 0.037 14 0 0.08 13 0 1.5 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:29994-30456 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~29994-30456 IFP_35_N PF07334.8 g26117.t1 - 0.032 14.1 0.4 0.071 13 0.3 1.6 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:388465-388779 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~388465-388779 DUF3464 PF11947.3 g100942.t1 - 0.3 10.5 1.7 0.6 9.5 1.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3464) | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:372552-373367 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~372552-373367 Rtf2 PF04641.7 g46789.t1 - 0.6 9.2 24.5 0.7 9 17 1.2 1 0 0 1 1 1 0 Rtf2 RING-finger | Ref_seq=scaffold1076_contigs=5, transcript_loc=scaffold1076_contigs=5:141810-142280 Augustus predicted protein sequence Tobacco scaffold1076_contigs=5~141810-142280 Rb_C PF08934.5 g129126.t1 - 0.024 14.2 0 0.026 14.1 0 1.1 1 0 0 1 1 1 0 Rb C-terminal domain | Ref_seq=scaffold2918_contigs=1, transcript_loc=scaffold2918_contigs=1:279-635 Augustus predicted protein sequence Tobacco scaffold2918_contigs=1~279-635 DUF1313 PF07011.6 g88025.t1 - 0.005 16.4 0.8 0.0056 16.3 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1313) | Ref_seq=scaffold1906_contigs=5, transcript_loc=scaffold1906_contigs=5:8939-9232 Augustus predicted protein sequence Tobacco scaffold1906_contigs=5~8939-9232 TraH_2 PF06871.6 g100427.t1 - 0.093 12.1 0 0.1 12 0 1.1 1 0 0 1 1 1 0 TraH_2 | Ref_seq=scaffold2189_contigs=3, transcript_loc=scaffold2189_contigs=3:4747-5097 Augustus predicted protein sequence Tobacco scaffold2189_contigs=3~4747-5097 LHH PF14411.1 g129426.t1 - 0.11 12.7 0.5 0.47 10.7 0.4 2 2 0 0 2 2 2 0 A nuclease of the HNH/ENDO VII superfamily with conserved LHH | Ref_seq=scaffold2954_contigs=1, transcript_loc=scaffold2954_contigs=1:8265-9273 Augustus predicted protein sequence Tobacco scaffold2954_contigs=1~8265-9273 adh_short PF00106.20 g47157.t1 - 0.13 12.1 1 0.37 10.7 0.5 1.7 1 1 1 2 2 2 0 short chain dehydrogenase | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:134511-134843 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~134511-134843 CitX PF03802.9 g93023.t1 - 0.062 12.7 0 0.066 12.6 0 1.1 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:524970-525191 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~524970-525191 Bindin PF02084.10 g56494.t1 - 0.11 12.5 3.2 0.1 12.6 2.2 1 1 0 0 1 1 1 0 Bindin | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:260146-260352 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~260146-260352 DNAP_B_exo_N PF08452.5 g6298.t1 - 0.84 8.9 5.9 1.1 8.5 0 3.4 3 0 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:449653-449880 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~449653-449880 Pneumo_att_G PF05539.6 g11067.t1 - 2.7 7.2 11.4 3.4 6.9 7.9 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:76946-77649 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~76946-77649 ATHILA PF03078.10 g55170.t1 - 0.00045 18.9 0.2 0.16 10.4 0 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:57666-58313 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~57666-58313 RUN PF02759.14 g57701.t1 - 0.07 12.8 0 0.07 12.8 0 1.1 1 0 0 1 1 1 0 RUN domain | Ref_seq=scaffold1257_contigs=2, transcript_loc=scaffold1257_contigs=2:38912-40795 Augustus predicted protein sequence Tobacco scaffold1257_contigs=2~38912-40795 PSI_8 PF00796.13 g8290.t1 - 0.67 9.5 3.2 2.1 7.9 2.2 1.9 1 1 0 1 1 1 0 Photosystem I reaction centre subunit VIII | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:101670-101960 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~101670-101960 DUF3778 PF12620.3 g6526.t1 - 0.0085 15.6 4.4 0.042 13.3 1 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF3778) | Ref_seq=scaffold299_contigs=2, transcript_loc=scaffold299_contigs=2:14526-14858 Augustus predicted protein sequence Tobacco scaffold299_contigs=2~14526-14858 Mito_fiss_reg PF05308.6 g39166.t1 - 0.16 11.3 3.1 0.24 10.7 2.1 1.3 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:35206-35709 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~35206-35709 4HBT PF03061.17 g34515.t1 - 0.052 13.6 0.1 0.089 12.9 0.1 1.4 1 1 0 1 1 1 0 Thioesterase superfamily | Ref_seq=scaffold855_contigs=1, transcript_loc=scaffold855_contigs=1:13926-14207 Augustus predicted protein sequence Tobacco scaffold855_contigs=1~13926-14207 DUF2798 PF11391.3 g45648.t1 - 0.16 11.7 0.2 0.28 10.9 0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2798) | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:294566-295357 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~294566-295357 Phage_sheath_1 PF04984.9 g104739.t1 - 0.12 10.7 0.5 0.15 10.4 0.4 1 1 0 0 1 1 1 0 Phage tail sheath protein | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:164689-164973 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~164689-164973 RVT_3 PF13456.1 g104202.t1 - 0.02 14.6 0 0.037 13.7 0 1.5 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:72873-73320 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~72873-73320 YdjO PF14169.1 g124118.t1 - 0.0078 15.6 0.4 0.013 14.9 0.3 1.4 1 0 0 1 1 1 1 Cold-inducible protein YdjO | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1387124-1387814 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1387124-1387814 Lectin_N PF03954.9 g98316.t1 - 0.012 15 0.1 0.014 14.7 0.1 1.1 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain | Ref_seq=scaffold2159_contigs=6, transcript_loc=scaffold2159_contigs=6:59381-59602 Augustus predicted protein sequence Tobacco scaffold2159_contigs=6~59381-59602 Caveolin PF01146.12 g119262.t1 - 0.018 14.6 1.2 0.024 14.2 0.9 1.2 1 0 0 1 1 1 0 Caveolin | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:134217-134715 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~134217-134715 DAZAP2 PF11029.3 g20458.t1 - 3.5 8.1 7.1 11 6.4 3.4 2 1 1 1 2 2 2 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:308899-309536 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~308899-309536 DUF605 PF04652.11 g123342.t1 - 2.8 7.2 10.8 3.2 7 7.5 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold2757_contigs=5, transcript_loc=scaffold2757_contigs=5:3685-4374 Augustus predicted protein sequence Tobacco scaffold2757_contigs=5~3685-4374 DUF538 PF04398.7 g87398.t1 - 0.000000018 34.5 0.6 0.0019 18.4 0.1 2.1 1 1 1 2 2 2 2 Protein of unknown function, DUF538 | Ref_seq=scaffold1878_contigs=7, transcript_loc=scaffold1878_contigs=7:23531-24690 Augustus predicted protein sequence Tobacco scaffold1878_contigs=7~23531-24690 Tax PF02959.11 g19653.t1 - 0.054 12.9 0.1 0.061 12.7 0.1 1 1 0 0 1 1 1 0 HTLV Tax | Ref_seq=scaffold571_contigs=4, transcript_loc=scaffold571_contigs=4:37631-37876 Augustus predicted protein sequence Tobacco scaffold571_contigs=4~37631-37876 Phage_integrase PF00589.17 g130079.t1 - 0.044 13.4 0 0.046 13.3 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:1112-1462 Augustus predicted protein sequence Tobacco scaffold3413_contigs=1~1112-1462 DUF2890 PF11081.3 g92166.t1 - 1.2 9.1 3.8 1.8 8.5 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:116264-117231 Augustus predicted protein sequence Tobacco scaffold1984_contigs=7~116264-117231 DinI PF06183.8 g16775.t1 - 0.0032 17.4 0 3.7 7.6 0 2.4 2 0 0 2 2 2 2 DinI-like family | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:389200-391377 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~389200-391377 zf-CCHC PF00098.18 g89529.t1 - 0.0027 17.5 1.6 0.0045 16.8 1.1 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:3181-4905 Augustus predicted protein sequence Tobacco scaffold1949_contigs=5~3181-4905 DUF3275 PF11679.3 g125440.t1 - 0.22 11.1 2.5 0.28 10.8 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) | Ref_seq=scaffold2773_contigs=1, transcript_loc=scaffold2773_contigs=1:112957-113343 Augustus predicted protein sequence Tobacco scaffold2773_contigs=1~112957-113343 CDC45 PF02724.9 g104365.t1 - 0.016 13.2 16.3 0.019 13 11.3 1.2 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:640105-642525 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~640105-642525 Calsarcin PF05556.6 g101937.t1 - 0.079 12.1 0.1 0.085 12 0.1 1 1 0 0 1 1 1 0 Calcineurin-binding protein (Calsarcin) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:117960-118178 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~117960-118178 DSL PF01414.14 g117927.t1 - 0.075 13 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Delta serrate ligand | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:14644-15000 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~14644-15000 DUF805 PF05656.9 g103209.t1 - 0.11 12.2 0 0.13 12 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:143882-144698 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~143882-144698 GP40 PF11025.3 g47036.t1 - 0.15 11.6 0 0.21 11.1 0 1.2 1 0 0 1 1 1 0 Glycoprotein GP40 of Cryptosporidium | Ref_seq=scaffold1083_contigs=11, transcript_loc=scaffold1083_contigs=11:409924-410244 Augustus predicted protein sequence Tobacco scaffold1083_contigs=11~409924-410244 BTK PF00779.14 g96461.t1 - 0.73 9.4 4.4 1.4 8.6 3.1 1.4 1 0 0 1 1 1 0 BTK motif | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:42941-43759 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~42941-43759 ATHILA PF03078.10 g86057.t1 - 0.0012 17.4 0 0.0013 17.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:92673-92927 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~92673-92927 DUF2310 PF10071.4 g20652.t1 - 0.11 11.4 0 0.17 10.8 0 1.2 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:626094-628754 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~626094-628754 MCPVI PF02993.9 g109792.t1 - 0.4 10.8 3.1 0.48 10.5 2.1 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:142986-143719 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~142986-143719 DUF4633 PF15464.1 g20795.t1 - 0.087 12.6 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4633) | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:269280-271301 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~269280-271301 Peptidase_S46 PF10459.4 g116254.t1 - 0.22 9.9 3.8 0.25 9.7 2.6 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:288380-290289 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~288380-290289 zf-CCHC PF00098.18 g30096.t1 - 0.0001 22 0.7 0.00023 20.9 0.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:408505-411512 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~408505-411512 MHCassoc_trimer PF08831.5 g87684.t1 - 0.19 11.6 1.1 0.35 10.7 0.8 1.5 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:74242-74906 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~74242-74906 AMA-1 PF02430.10 g41727.t1 - 0.054 12.3 0.2 0.066 12 0.2 1 1 0 0 1 1 1 0 Apical membrane antigen 1 | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:73689-74251 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~73689-74251 RVT_3 PF13456.1 g81218.t1 - 0.0084 15.8 0 0.035 13.8 0 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1726_contigs=2, transcript_loc=scaffold1726_contigs=2:27011-27391 Augustus predicted protein sequence Tobacco scaffold1726_contigs=2~27011-27391 Trypan_PARP PF05887.6 g18796.t1 - 0.012 15.4 3.7 0.014 15.1 2.5 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:783859-785771 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~783859-785771 DUF4283 PF14111.1 g3643.t1 - 7E-010 38.1 0.1 8.1E-010 37.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:177709-178086 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~177709-178086 ResIII PF04851.10 g106528.t1 - 0.023 14.5 0 0.025 14.3 0 1.1 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:10584-11228 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~10584-11228 RVT_3 PF13456.1 g109203.t1 - 0.0035 17 0 0.005 16.5 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2485_contigs=8, transcript_loc=scaffold2485_contigs=8:348551-349069 Augustus predicted protein sequence Tobacco scaffold2485_contigs=8~348551-349069 DUF4481 PF14800.1 g129393.t1 - 0.31 9.9 3.5 0.55 9 2.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4481) | Ref_seq=scaffold2947_contigs=1, transcript_loc=scaffold2947_contigs=1:4896-5740 Augustus predicted protein sequence Tobacco scaffold2947_contigs=1~4896-5740 MHCassoc_trimer PF08831.5 g106235.t1 - 0.11 12.3 0.9 0.26 11.1 0.6 1.7 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2370_contigs=5, transcript_loc=scaffold2370_contigs=5:209493-210488 Augustus predicted protein sequence Tobacco scaffold2370_contigs=5~209493-210488 Katanin_con80 PF13925.1 g105034.t1 - 0.031 14 0 0.036 13.8 0 1.1 1 0 0 1 1 1 0 con80 domain of Katanin | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:133491-134202 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~133491-134202 TOBE PF03459.12 g127534.t1 - 0.13 12.3 1.5 6.6 6.9 0.2 2.7 2 1 1 3 3 3 0 TOBE domain | Ref_seq=scaffold2829_contigs=1, transcript_loc=scaffold2829_contigs=1:1004-1393 Augustus predicted protein sequence Tobacco scaffold2829_contigs=1~1004-1393 Vpu PF00558.14 g20630.t1 - 0.14 11.7 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 Vpu protein | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:587662-588054 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~587662-588054 zf-CCHC PF00098.18 g97329.t1 - 0.00019 21.2 0.7 0.00019 21.2 0.5 2.3 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold2134_contigs=5, transcript_loc=scaffold2134_contigs=5:38088-39107 Augustus predicted protein sequence Tobacco scaffold2134_contigs=5~38088-39107 LRR_1 PF00560.28 g95995.t1 - 0.1 12.7 1.1 3.5 8 0.1 2.5 2 1 0 2 2 2 0 Leucine Rich Repeat | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:91463-91678 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~91463-91678 Peptidase_S58 PF03576.9 g30155.t1 - 0.086 12 0 2.5 7.2 0 2 1 1 1 2 2 2 0 Peptidase family S58 | Ref_seq=scaffold769_contigs=2, transcript_loc=scaffold769_contigs=2:55646-56356 Augustus predicted protein sequence Tobacco scaffold769_contigs=2~55646-56356 Glycohydro_20b2 PF14845.1 g107104.t1 - 0.0025 18.4 0.3 0.0041 17.7 0.1 1.4 1 1 0 1 1 1 1 beta-acetyl hexosaminidase like | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:650017-653833 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~650017-653833 ERM PF00769.14 g39806.t1 - 0.027 14 0.3 0.031 13.8 0.2 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:266314-268478 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~266314-268478 Herpes_IR6 PF06307.7 g69086.t1 - 0.081 12.2 0 0.1 11.8 0 1.1 1 0 0 1 1 1 0 Herpesvirus IR6 protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:431160-431977 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~431160-431977 DNA_pol3_chi PF04364.8 g79177.t1 - 0.063 13.1 0 0.082 12.7 0 1.1 1 0 0 1 1 1 0 DNA polymerase III chi subunit, HolC | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:106462-106779 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~106462-106779 FH2 PF02181.18 g97607.t1 - 0.031 13.1 0 0.043 12.7 0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2140_contigs=3, transcript_loc=scaffold2140_contigs=3:3133-5583 Augustus predicted protein sequence Tobacco scaffold2140_contigs=3~3133-5583 rve PF00665.21 g19094.t1 - 0.00047 20.2 0 0.00056 19.9 0 1.2 1 0 0 1 1 1 1 Integrase core domain | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:293644-294291 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~293644-294291 FlxA PF14282.1 g55658.t1 - 0.03 14.2 1.3 0.03 14.2 0.9 2 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:177676-178008 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~177676-178008 CNP1 PF08750.6 g84232.t1 - 0.0041 16.8 0.3 0.0046 16.6 0.2 1.1 1 0 0 1 1 1 1 CNP1-like family | Ref_seq=scaffold1816_contigs=3, transcript_loc=scaffold1816_contigs=3:76384-76671 Augustus predicted protein sequence Tobacco scaffold1816_contigs=3~76384-76671 Gln-synt_N PF03951.14 g20832.t1 - 0.096 12.2 1 2.5 7.7 0.7 2.7 2 1 0 2 2 2 0 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:332108-332582 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~332108-332582 Myc_N PF01056.13 g123742.t1 - 0.059 12.5 0.4 0.056 12.6 0.3 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:437480-437737 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~437480-437737 zf-RVT PF13966.1 g41465.t1 - 9.2E-009 35.5 0 0.000000011 35.2 0 1.1 1 0 0 1 1 1 1 zinc-binding in reverse transcriptase | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:13580-13861 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~13580-13861 DUF2034 PF10356.4 g129615.t1 - 0.1 11.7 0 0.11 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) | Ref_seq=scaffold3001_contigs=1, transcript_loc=scaffold3001_contigs=1:4722-4979 Augustus predicted protein sequence Tobacco scaffold3001_contigs=1~4722-4979 MraZ PF02381.13 g112749.t1 - 0.048 13.4 0 0.065 13 0 1.2 1 0 0 1 1 1 0 MraZ protein | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:42693-42953 Augustus predicted protein sequence Tobacco scaffold2618_contigs=26~42693-42953 Collagen_bind_2 PF12904.2 g91596.t1 - 0.12 12.1 0 0.22 11.3 0 1.5 1 0 0 1 1 1 0 Putative collagen-binding domain of a collagenase | Ref_seq=scaffold1975_contigs=6, transcript_loc=scaffold1975_contigs=6:18227-18793 Augustus predicted protein sequence Tobacco scaffold1975_contigs=6~18227-18793 PPC PF04151.10 g35128.t1 - 0.067 14.1 0.8 0.083 13.8 0.5 1.2 1 0 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:88405-88860 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~88405-88860 DUF169 PF02596.10 g10772.t1 - 1.2 8.4 4 18 4.6 0.1 2.6 3 0 0 3 3 3 0 Uncharacterised ArCR, COG2043 | Ref_seq=scaffold393_contigs=8, transcript_loc=scaffold393_contigs=8:57587-58930 Augustus predicted protein sequence Tobacco scaffold393_contigs=8~57587-58930 Urease_gamma PF00547.13 g38284.t1 - 0.065 13.2 0 0.088 12.8 0 1.2 1 0 0 1 1 1 0 Urease, gamma subunit | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:205223-206086 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~205223-206086 IATP PF04568.7 g127901.t1 - 0.23 11.5 4.2 0.25 11.4 1.7 1.8 1 1 1 2 2 2 0 Mitochondrial ATPase inhibitor, IATP | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:17111-20507 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~17111-20507 CLASP_N PF12348.3 g94025.t1 - 0.12 11.6 0.1 0.15 11.3 0.1 1.1 1 0 0 1 1 1 0 CLASP N terminal | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:426593-427549 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~426593-427549 TGFb_propeptide PF00688.13 g57007.t1 - 0.05 12.8 0.4 0.053 12.7 0.3 1 1 0 0 1 1 1 0 TGF-beta propeptide | Ref_seq=scaffold1245_contigs=4, transcript_loc=scaffold1245_contigs=4:22160-22378 Augustus predicted protein sequence Tobacco scaffold1245_contigs=4~22160-22378 IGFBP PF00219.13 g128945.t1 - 0.89 10.1 5.6 1.4 9.5 3.9 1.4 1 1 0 1 1 1 0 Insulin-like growth factor binding protein | Ref_seq=scaffold2903_contigs=1, transcript_loc=scaffold2903_contigs=1:2553-2762 Augustus predicted protein sequence Tobacco scaffold2903_contigs=1~2553-2762 OAD_gamma PF04277.8 g41240.t1 - 0.048 14 0.2 0.061 13.6 0.2 1.2 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain | Ref_seq=scaffold985_contigs=1, transcript_loc=scaffold985_contigs=1:93201-93428 Augustus predicted protein sequence Tobacco scaffold985_contigs=1~93201-93428 DUF3585 PF12130.3 g93662.t1 - 0.0013 18.5 1 0.0014 18.4 0.7 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3585) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:293917-294183 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~293917-294183 HDAC4_Gln PF12203.3 g53735.t1 - 0.16 11.9 3.2 0.19 11.7 2.2 1.1 1 0 0 1 1 1 0 Glutamine rich N terminal domain of histone deacetylase 4 | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:212208-212507 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~212208-212507 Mto2_bdg PF12808.2 g27329.t1 - 0.17 12 2.3 0.6 10.2 1.3 2.2 1 1 1 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region | Ref_seq=scaffold724_contigs=4, transcript_loc=scaffold724_contigs=4:15140-16360 Augustus predicted protein sequence Tobacco scaffold724_contigs=4~15140-16360 Pox_F17 PF04767.7 g97219.t1 - 0.027 14.7 1.6 0.044 14 0.8 1.5 1 1 0 1 1 1 0 DNA-binding 11 kDa phosphoprotein | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:33009-33341 Augustus predicted protein sequence Tobacco scaffold2130_contigs=1~33009-33341 DUF4283 PF14111.1 g68992.t1 - 0.00000074 28.3 0 0.0000012 27.7 0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:265442-266763 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~265442-266763 DICT PF10069.4 g106583.t1 - 0.063 12.8 0 0.13 11.8 0 1.5 2 0 0 2 2 2 0 Sensory domain found in DIguanylate Cyclases & Two-component systems | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:115311-115721 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~115311-115721 WEMBL PF05701.6 g75504.t1 - 0.0019 16.7 1.4 0.003 16 1 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:105493-106456 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~105493-106456 Paramyxo_ncap PF00973.14 g41423.t1 - 0.035 12.8 0 0.042 12.5 0 1 1 0 0 1 1 1 0 Paramyxovirus nucleocapsid protein | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:263633-263947 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~263633-263947 Myf5 PF12232.3 g42142.t1 - 0.034 14.7 0.1 0.076 13.6 0.1 1.6 1 0 0 1 1 1 0 Myogenic determination factor 5 | Ref_seq=scaffold1003_contigs=3, transcript_loc=scaffold1003_contigs=3:119532-120915 Augustus predicted protein sequence Tobacco scaffold1003_contigs=3~119532-120915 zf-CCHC PF00098.18 g115532.t1 - 0.000057 22.8 2 0.00012 21.8 1.4 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:584078-584420 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~584078-584420 PB1-F2 PF11986.3 g8679.t1 - 0.18 11.8 0.3 36 4.4 0 2.7 1 1 2 3 3 3 0 Influenza A Proapoptotic protein | Ref_seq=scaffold343_contigs=1, transcript_loc=scaffold343_contigs=1:1-568 Augustus predicted protein sequence Tobacco scaffold343_contigs=1~1-568 DUF745 PF05335.8 g122221.t1 - 0.11 11.9 6.1 0.3 10.5 4.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF745) | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:92360-94043 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~92360-94043 GIT_SHD PF08518.6 g23066.t1 - 0.025 13.9 8.8 15 5 0.1 4.2 4 0 0 4 4 4 0 Spa2 homology domain (SHD) of GIT | Ref_seq=scaffold635_contigs=5, transcript_loc=scaffold635_contigs=5:14220-14714 Augustus predicted protein sequence Tobacco scaffold635_contigs=5~14220-14714 RseA_C PF03873.8 g104865.t1 - 0.05 13.4 0 0.15 11.9 0 1.7 1 1 0 1 1 1 0 Anti sigma-E protein RseA, C-terminal domain | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:216971-217693 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~216971-217693 ATHILA PF03078.10 g97739.t1 - 0.000000034 32.5 0 0.000000035 32.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:47830-48147 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~47830-48147 MTS PF05175.9 g67319.t1 - 0.038 13.3 0 0.066 12.5 0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:37782-39761 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~37782-39761 DUF2999 PF11212.3 g83493.t1 - 0.083 12.9 0 0.22 11.5 0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) | Ref_seq=scaffold1793_contigs=8, transcript_loc=scaffold1793_contigs=8:106072-106674 Augustus predicted protein sequence Tobacco scaffold1793_contigs=8~106072-106674 UBN2 PF14223.1 g100796.t1 - 0.005 16.6 1.1 0.0064 16.2 0.2 1.5 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2205_contigs=11, transcript_loc=scaffold2205_contigs=11:22504-22956 Augustus predicted protein sequence Tobacco scaffold2205_contigs=11~22504-22956 Pentaxin PF00354.12 g75630.t1 - 0.099 12 0 0.12 11.7 0 1.1 1 0 0 1 1 1 0 Pentaxin family | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:115635-116679 Augustus predicted protein sequence Tobacco scaffold1576_contigs=4~115635-116679 Chromo PF00385.19 g44281.t1 - 0.00068 19.2 0 0.0011 18.5 0 1.3 1 0 0 1 1 1 1 Chromo (CHRromatin Organisation MOdifier) domain | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:148654-150353 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~148654-150353 MMS22L_N PF14910.1 g74716.t1 - 0.088 11 0.3 0.099 10.8 0.2 1 1 0 0 1 1 1 0 S-phase genomic integrity recombination mediator, N-terminal | Ref_seq=scaffold1563_contigs=5, transcript_loc=scaffold1563_contigs=5:77129-77359 Augustus predicted protein sequence Tobacco scaffold1563_contigs=5~77129-77359 RasGAP_C PF03836.10 g126434.t1 - 0.004 16.8 0.3 0.0055 16.3 0.2 1.3 1 0 0 1 1 1 1 RasGAP C-terminus | Ref_seq=scaffold2795_contigs=1, transcript_loc=scaffold2795_contigs=1:3026-4363 Augustus predicted protein sequence Tobacco scaffold2795_contigs=1~3026-4363 RVP_2 PF08284.6 g127631.t1 - 0.000057 23 0 0.000075 22.6 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold2832_contigs=1, transcript_loc=scaffold2832_contigs=1:15383-15836 Augustus predicted protein sequence Tobacco scaffold2832_contigs=1~15383-15836 GBP_C PF02841.9 g89913.t1 - 0.0042 16.3 7.8 0.0049 16 5.4 1.1 1 0 0 1 1 1 1 Guanylate-binding protein, C-terminal domain | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:23641-26176 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~23641-26176 zf-BED PF02892.10 g88382.t1 - 0.0083 15.8 2.4 0.0083 15.8 1.7 2.1 2 1 0 2 2 2 1 BED zinc finger | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:124336-126784 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~124336-126784 RWP-RK PF02042.10 g10670.t1 - 0.033 14 0.5 0.052 13.3 0.3 1.3 1 0 0 1 1 1 0 RWP-RK domain | Ref_seq=scaffold390_contigs=8, transcript_loc=scaffold390_contigs=8:177362-177730 Augustus predicted protein sequence Tobacco scaffold390_contigs=8~177362-177730 Spc7 PF08317.6 g29990.t1 - 0.0049 15.5 3.4 0.0081 14.8 2.4 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:167904-169714 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~167904-169714 TAF1_subA PF14929.1 g97391.t1 - 0.057 11.8 0 0.057 11.8 0 1 1 0 0 1 1 1 0 TAF RNA Polymerase I subunit A | Ref_seq=scaffold2135_contigs=3, transcript_loc=scaffold2135_contigs=3:34947-35231 Augustus predicted protein sequence Tobacco scaffold2135_contigs=3~34947-35231 DUF2815 PF10991.3 g117787.t1 - 0.023 14.2 0.1 0.025 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2815) | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:89185-89415 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~89185-89415 MRG PF05712.8 g90327.t1 - 0.000055 22.1 0.1 0.00007 21.7 0 1.1 1 0 0 1 1 1 1 MRG | Ref_seq=scaffold1961_contigs=3, transcript_loc=scaffold1961_contigs=3:7452-7700 Augustus predicted protein sequence Tobacco scaffold1961_contigs=3~7452-7700 Lsm_C PF14894.1 g105641.t1 - 0.31 10.5 1.7 0.59 9.6 1.2 1.4 1 0 0 1 1 1 0 Lsm C-terminal | Ref_seq=scaffold2359_contigs=12, transcript_loc=scaffold2359_contigs=12:121698-121955 Augustus predicted protein sequence Tobacco scaffold2359_contigs=12~121698-121955 zf-ribbon_3 PF13248.1 g8109.t1 - 0.16 11.2 1.1 0.28 10.4 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold329_contigs=2, transcript_loc=scaffold329_contigs=2:47505-49093 Augustus predicted protein sequence Tobacco scaffold329_contigs=2~47505-49093 ATHILA PF03078.10 g27928.t1 - 0.0000004 29 0.3 0.00000051 28.6 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:586869-587591 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~586869-587591 ATHILA PF03078.10 g116402.t1 - 0.0000026 26.3 0 0.000003 26 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:272521-272766 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~272521-272766 DUF3674 PF12426.3 g53679.t1 - 0.13 11.6 1 0.29 10.5 0.7 1.5 1 0 0 1 1 1 0 RNA dependent RNA polymerase | Ref_seq=scaffold1189_contigs=6, transcript_loc=scaffold1189_contigs=6:89876-90987 Augustus predicted protein sequence Tobacco scaffold1189_contigs=6~89876-90987 Rad10 PF03834.9 g22126.t1 - 0.0052 16.4 0 0.19 11.4 0 2.4 2 0 0 2 2 2 1 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) | Ref_seq=scaffold613_contigs=1, transcript_loc=scaffold613_contigs=1:42641-43601 Augustus predicted protein sequence Tobacco scaffold613_contigs=1~42641-43601 SRRM_C PF15230.1 g57285.t1 - 0.13 12.3 3.3 0.17 11.9 2.3 1.2 1 0 0 1 1 1 0 Serine/arginine repetitive matrix protein C-terminus | Ref_seq=scaffold1248_contigs=3, transcript_loc=scaffold1248_contigs=3:134511-136243 Augustus predicted protein sequence Tobacco scaffold1248_contigs=3~134511-136243 ATHILA PF03078.10 g112343.t1 - 0.16 10.5 0 0.19 10.3 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:139283-139729 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~139283-139729 Treslin_N PF15292.1 g4817.t1 - 0.043 11.7 0.1 0.048 11.5 0.1 1 1 0 0 1 1 1 0 Treslin N-terminus | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:102322-104148 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~102322-104148 Sigma70_ner PF04546.8 g44460.t1 - 0.016 14.8 0 0.026 14.1 0 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:141043-143805 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~141043-143805 bcl-2I13 PF12201.3 g58077.t1 - 0.04 13.3 0 0.071 12.5 0 1.4 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:314052-314753 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~314052-314753 DUF1510 PF07423.6 g41494.t1 - 0.035 13.4 6.7 0.039 13.3 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:125577-125912 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~125577-125912 Mu-conotoxin PF05374.7 g120998.t1 - 0.019 14.7 3.5 0.038 13.7 2.4 1.5 1 0 0 1 1 1 0 Mu-Conotoxin | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:195247-195561 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~195247-195561 Gallidermin PF02052.10 g87046.t1 - 0.12 12.4 0.3 0.19 11.8 0 1.6 2 0 0 2 2 2 0 Gallidermin | Ref_seq=scaffold1866_contigs=5, transcript_loc=scaffold1866_contigs=5:16050-17566 Augustus predicted protein sequence Tobacco scaffold1866_contigs=5~16050-17566 UPF0004 PF00919.15 g102951.t1 - 0.0053 16.5 0.4 0.038 13.7 0.1 1.9 1 1 1 2 2 2 1 Uncharacterized protein family UPF0004 | Ref_seq=scaffold2275_contigs=2, transcript_loc=scaffold2275_contigs=2:15546-16268 Augustus predicted protein sequence Tobacco scaffold2275_contigs=2~15546-16268 LZ_Tnp_IS66 PF13007.2 g13824.t1 - 0.044 14.4 0.4 0.044 14.4 0.3 1.9 2 0 0 2 2 2 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:157295-157983 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~157295-157983 BURP PF03181.10 g114818.t1 - 0.077 12.1 0.1 0.088 11.9 0 1.1 1 0 0 1 1 1 0 BURP domain | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:164134-164442 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~164134-164442 Phage_endo_I PF05367.6 g73943.t1 - 0.035 13.5 0 0.056 12.8 0 1.3 1 0 0 1 1 1 0 Phage endonuclease I | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:255954-256442 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~255954-256442 PET122 PF05476.6 g23714.t1 - 0.17 11.1 0 0.22 10.7 0 1.1 1 0 0 1 1 1 0 PET122 | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:490937-491212 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~490937-491212 Vezatin PF12632.2 g115069.t1 - 0.031 13.3 1.2 0.037 13.1 0.8 1.1 1 0 0 1 1 1 0 Mysoin-binding motif of peroxisomes | Ref_seq=scaffold2657_contigs=15, transcript_loc=scaffold2657_contigs=15:343820-344456 Augustus predicted protein sequence Tobacco scaffold2657_contigs=15~343820-344456 zf-CCHC PF00098.18 g119800.t1 - 0.00013 21.6 0.9 0.00019 21.2 0.6 1.2 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:198654-198968 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~198654-198968 NTP_transf_4 PF13562.1 g109252.t1 - 0.095 12.3 0 12 5.5 0 2.1 1 1 0 2 2 2 0 Sugar nucleotidyl transferase | Ref_seq=scaffold2491_contigs=9, transcript_loc=scaffold2491_contigs=9:5086-7372 Augustus predicted protein sequence Tobacco scaffold2491_contigs=9~5086-7372 DegS PF05384.6 g70200.t1 - 0.025 13.8 0.2 0.043 13 0.1 1.3 1 0 0 1 1 1 0 Sensor protein DegS | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:55808-59110 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~55808-59110 Acetyltransf_6 PF13480.1 g12710.t1 - 0.039 13.9 0.3 0.039 13.9 0.2 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:317006-317345 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~317006-317345 CDI PF02234.14 g105763.t1 - 0.0011 18.7 0.5 0.0028 17.3 0.4 1.9 1 1 0 1 1 1 1 Cyclin-dependent kinase inhibitor | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:200802-201520 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~200802-201520 Cep57_CLD_2 PF14197.1 g24489.t1 - 0.02 14.8 11.6 0.037 13.9 8 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 | Ref_seq=scaffold672_contigs=7, transcript_loc=scaffold672_contigs=7:61995-64089 Augustus predicted protein sequence Tobacco scaffold672_contigs=7~61995-64089 Drf_FH1 PF06346.7 g101884.t1 - 0.0061 16 3.3 0.008 15.7 2.3 1.1 1 0 0 1 1 1 1 Formin Homology Region 1 | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:106844-107305 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~106844-107305 DUF3024 PF11225.3 g101962.t1 - 0.057 13.3 0.1 0.089 12.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3024) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:200778-201008 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~200778-201008 Retinin_C PF04527.7 g67339.t1 - 0.088 12.8 1.1 0.13 12.3 0.5 1.5 1 1 0 1 1 1 0 Drosophila Retinin like protein | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:68958-69185 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~68958-69185 Trypan_PARP PF05887.6 g64223.t1 - 0.0016 18.2 11.9 0.0018 18.1 8.2 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:173512-174014 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~173512-174014 Prefoldin_2 PF01920.15 g65398.t1 - 0.16 11.7 0 0.25 11.1 0 1.2 1 0 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:193364-193794 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~193364-193794 IlvGEDA_leader PF08046.6 g69753.t1 - 0.065 12.3 0.5 0.065 12.3 0.3 1.7 2 0 0 2 2 2 0 IlvGEDA operon leader peptide | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:51489-51863 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~51489-51863 Rad4 PF03835.10 g118761.t1 - 0.023 14 0.2 0.03 13.7 0.2 1.2 1 0 0 1 1 1 0 Rad4 transglutaminase-like domain | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:25585-27459 Augustus predicted protein sequence Tobacco scaffold2706_contigs=4~25585-27459 ATHILA PF03078.10 g91366.t1 - 0.0000019 26.7 0 0.0000042 25.6 0 1.5 1 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1972_contigs=6, transcript_loc=scaffold1972_contigs=6:26472-27427 Augustus predicted protein sequence Tobacco scaffold1972_contigs=6~26472-27427 Xpo1 PF08389.7 g94750.t1 - 0.088 12.7 0 0.12 12.2 0 1.2 1 0 0 1 1 1 0 Exportin 1-like protein | Ref_seq=scaffold2046_contigs=5, transcript_loc=scaffold2046_contigs=5:44961-46479 Augustus predicted protein sequence Tobacco scaffold2046_contigs=5~44961-46479 Ornatin PF02088.10 g3613.t1 - 0.14 11.7 0.3 0.25 10.9 0.2 1.4 1 0 0 1 1 1 0 Ornatin | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:111266-111706 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~111266-111706 LZ_Tnp_IS481 PF13011.1 g101518.t1 - 0.013 15.8 2.7 0.016 15.5 0.8 1.9 1 1 0 2 2 2 0 leucine-zipper of insertion element IS481 | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:200459-201292 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~200459-201292 PqqD PF05402.7 g78564.t1 - 0.054 13.5 0.2 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) | Ref_seq=scaffold1658_contigs=5, transcript_loc=scaffold1658_contigs=5:20680-24778 Augustus predicted protein sequence Tobacco scaffold1658_contigs=5~20680-24778 WRKY PF03106.10 g113770.t1 - 0.027 14.3 0.1 0.039 13.8 0.1 1.3 1 0 0 1 1 1 0 WRKY DNA -binding domain | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:398401-398676 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~398401-398676 Peptidase_C74 PF12387.3 g379.t1 - 0.071 12.2 0.1 0.095 11.8 0.1 1.1 1 0 0 1 1 1 0 Pestivirus NS2 peptidase | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:43603-43962 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~43603-43962 DUF4512 PF14975.1 g94720.t1 - 0.16 12.7 0.4 0.23 12.3 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4512) | Ref_seq=scaffold2045_contigs=9, transcript_loc=scaffold2045_contigs=9:21975-22382 Augustus predicted protein sequence Tobacco scaffold2045_contigs=9~21975-22382 DUF2544 PF11245.3 g88725.t1 - 0.1 11.8 0.1 0.1 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2544) | Ref_seq=scaffold1934_contigs=9, transcript_loc=scaffold1934_contigs=9:11196-11474 Augustus predicted protein sequence Tobacco scaffold1934_contigs=9~11196-11474 RAI1 PF08652.6 g21811.t1 - 0.024 14.3 0.1 1.9 8.3 0 2.2 2 0 0 2 2 2 0 RAI1 like PD-(D/E)XK nuclease | Ref_seq=scaffold599_contigs=8, transcript_loc=scaffold599_contigs=8:247229-247576 Augustus predicted protein sequence Tobacco scaffold599_contigs=8~247229-247576 DUF3042 PF11240.3 g25858.t1 - 0.052 13.3 0.3 0.11 12.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3042) | Ref_seq=scaffold706_contigs=4, transcript_loc=scaffold706_contigs=4:29227-29538 Augustus predicted protein sequence Tobacco scaffold706_contigs=4~29227-29538 KCl_Cotrans_1 PF03522.10 g32580.t1 - 0.08 12.4 0.6 1.3 8.5 0 2.4 2 0 0 2 2 2 0 K-Cl Co-transporter type 1 (KCC1) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:414098-414945 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~414098-414945 DUF600 PF04634.7 g50758.t1 - 0.032 14.2 0.3 0.037 14 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF600 | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:32963-33501 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~32963-33501 Vir_act_alpha_C PF10400.4 g91109.t1 - 0.027 14.8 0.4 0.11 12.8 0.3 1.8 1 1 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:188861-189115 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~188861-189115 Transposase_28 PF04195.7 g57505.t1 - 0.00016 21 0.1 0.00021 20.6 0 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1251_contigs=2, transcript_loc=scaffold1251_contigs=2:7016-7366 Augustus predicted protein sequence Tobacco scaffold1251_contigs=2~7016-7366 Phage_antiter_Q PF06323.6 g82753.t1 - 0.021 14.2 0.9 0.026 13.9 0.5 1.3 1 1 0 1 1 1 0 Phage antitermination protein Q | Ref_seq=scaffold1765_contigs=2, transcript_loc=scaffold1765_contigs=2:22480-22863 Augustus predicted protein sequence Tobacco scaffold1765_contigs=2~22480-22863 DBD_Tnp_Mut PF03108.10 g23176.t1 - 0.0018 17.7 0.1 0.0022 17.5 0 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:2214-2862 Augustus predicted protein sequence Tobacco scaffold639_contigs=2~2214-2862 Dishevelled PF02377.10 g83369.t1 - 0.15 12.2 1.7 29 4.9 0.1 2.9 3 0 0 3 3 3 0 Dishevelled specific domain | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:38111-39070 Augustus predicted protein sequence Tobacco scaffold1791_contigs=14~38111-39070 Barwin PF00967.12 g53441.t1 - 0.043 13.4 0 0.069 12.8 0 1.3 1 0 0 1 1 1 0 Barwin family | Ref_seq=scaffold1187_contigs=6, transcript_loc=scaffold1187_contigs=6:322636-324850 Augustus predicted protein sequence Tobacco scaffold1187_contigs=6~322636-324850 SAM_2 PF07647.12 g119029.t1 - 0.066 13 0 0.088 12.6 0 1.2 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:813829-814062 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~813829-814062 EGF_alliinase PF04863.8 g99018.t1 - 0.96 9.4 5.3 0.19 11.7 0.4 1.9 2 0 0 2 2 2 0 Alliinase EGF-like domain | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:204178-204459 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~204178-204459 TM1506 PF08973.5 g112276.t1 - 0.063 12.8 0 0.07 12.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1893) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:7129-7643 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~7129-7643 zf-BED PF02892.10 g95447.t1 - 0.011 15.4 1.8 0.031 14 1.2 1.8 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:46685-48131 Augustus predicted protein sequence Tobacco scaffold2060_contigs=14~46685-48131 Sin3_corepress PF08295.7 g116497.t1 - 0.22 11.2 2.9 31 4.4 0.1 3.3 1 1 2 3 3 3 0 Sin3 family co-repressor | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:223000-224161 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~223000-224161 CbiG_N PF11760.3 g78649.t1 - 0.0053 16.4 1.7 0.78 9.4 0 2.4 2 0 0 2 2 2 2 Cobalamin synthesis G N-terminal | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:1-4355 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~1-4355 MtlR PF05068.7 g87496.t1 - 0.03 13.7 0.4 0.034 13.5 0.3 1.1 1 0 0 1 1 1 0 Mannitol repressor | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:254584-254967 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~254584-254967 PT-TG PF14449.1 g14617.t1 - 0.022 14.5 0.6 0.042 13.6 0 1.8 2 1 0 2 2 2 0 Pre-toxin TG | Ref_seq=scaffold478_contigs=9, transcript_loc=scaffold478_contigs=9:133589-134074 Augustus predicted protein sequence Tobacco scaffold478_contigs=9~133589-134074 PAT1 PF09770.4 g72139.t1 - 6 4.9 11.6 6.2 4.9 8 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:347701-348775 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~347701-348775 BTB PF00651.26 g88364.t1 - 0.062 13.2 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 BTB/POZ domain | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:76021-79951 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~76021-79951 Nterm_IS4 PF13006.2 g16053.t1 - 0.07 13.1 0.1 0.1 12.6 0 1.3 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:176679-177005 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~176679-177005 Fis1_TPR_C PF14853.1 g105479.t1 - 0.12 12.2 0 0.23 11.3 0 1.4 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat | Ref_seq=scaffold2355_contigs=18, transcript_loc=scaffold2355_contigs=18:360109-360589 Augustus predicted protein sequence Tobacco scaffold2355_contigs=18~360109-360589 N_NLPC_P60 PF12912.2 g107748.t1 - 0.13 12.4 0.1 2.5 8.2 0 2.2 2 0 0 2 2 2 0 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:252045-252557 Augustus predicted protein sequence Tobacco scaffold2408_contigs=11~252045-252557 CHASE4 PF05228.8 g58334.t1 - 0.052 13.1 0 0.071 12.6 0 1.2 1 0 0 1 1 1 0 CHASE4 domain | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:196141-196812 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~196141-196812 Acetyltransf_6 PF13480.1 g83947.t1 - 0.13 12.2 0 0.26 11.2 0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:153638-154299 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~153638-154299 DUF3763 PF12592.3 g3492.t1 - 0.041 13.5 0 0.052 13.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3763) | Ref_seq=scaffold235_contigs=2, transcript_loc=scaffold235_contigs=2:1-248 Augustus predicted protein sequence Tobacco scaffold235_contigs=2~1-248 Exotox-A_bind PF09101.5 g44755.t1 - 0.019 14 0.1 0.023 13.8 0.1 1.1 1 0 0 1 1 1 0 Exotoxin A binding | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:15612-16977 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~15612-16977 PQQ_3 PF13570.1 g69231.t1 - 0.0096 16.1 2.6 2.5 8.4 0.1 2.3 1 1 1 2 2 2 2 PQQ-like domain | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:28832-29336 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~28832-29336 SPOUT_MTase PF02590.12 g5424.t1 - 0.035 13.8 0 0.047 13.4 0 1.1 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase | Ref_seq=scaffold279_contigs=4, transcript_loc=scaffold279_contigs=4:14955-15824 Augustus predicted protein sequence Tobacco scaffold279_contigs=4~14955-15824 TAP42 PF04177.7 g128287.t1 - 0.053 12.4 0 0.064 12.1 0 1.1 1 0 0 1 1 1 0 TAP42-like family | Ref_seq=scaffold2860_contigs=1, transcript_loc=scaffold2860_contigs=1:42142-43997 Augustus predicted protein sequence Tobacco scaffold2860_contigs=1~42142-43997 Imm15 PF15590.1 g70154.t1 - 0.028 13.5 0.1 0.035 13.1 0 1.2 1 0 0 1 1 1 0 Immunity protein 15 | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:342448-342678 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~342448-342678 KRBA1 PF15287.1 g54204.t1 - 0.69 9.3 2.7 0.42 9.9 0.2 1.9 2 0 0 2 2 2 0 KRBA1 family repeat | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:12116-12430 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~12116-12430 RALF PF05498.6 g115632.t1 - 0.00096 19.9 1.4 0.013 16.3 1 2 1 1 0 1 1 1 1 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:840725-840976 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~840725-840976 TerY-C PF15616.1 g15656.t1 - 0.079 12.8 0.1 0.13 12.1 0 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:19497-23293 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~19497-23293 BESS PF02944.15 g70729.t1 - 0.4 10.2 1.7 2.6 7.6 0.3 2.6 3 0 0 3 3 3 0 BESS motif | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:60135-62220 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~60135-62220 DNAP_B_exo_N PF08452.5 g72738.t1 - 1 8.7 8.3 34 3.8 0 4 3 1 0 3 3 3 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold1520_contigs=13, transcript_loc=scaffold1520_contigs=13:183443-184387 Augustus predicted protein sequence Tobacco scaffold1520_contigs=13~183443-184387 GET2 PF08690.5 g104471.t1 - 0.0037 16.5 0.1 0.0048 16.1 0.1 1.1 1 0 0 1 1 1 1 GET complex subunit GET2 | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:246031-246510 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~246031-246510 DUF4283 PF14111.1 g79223.t1 - 0.0014 17.7 0 0.0018 17.3 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1689_contigs=11, transcript_loc=scaffold1689_contigs=11:283669-284189 Augustus predicted protein sequence Tobacco scaffold1689_contigs=11~283669-284189 Cast PF10174.4 g89981.t1 - 0.063 11.3 4.6 0.075 11 3.2 1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold1956_contigs=5, transcript_loc=scaffold1956_contigs=5:176844-177158 Augustus predicted protein sequence Tobacco scaffold1956_contigs=5~176844-177158 zf-CCHC PF00098.18 g42989.t1 - 0.000033 23.6 6.9 0.000051 23 4.7 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:117015-117532 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~117015-117532 zf-CW PF07496.10 g55599.t1 - 0.13 12 0.5 0.31 10.7 0.3 1.6 1 0 0 1 1 1 0 CW-type Zinc Finger | Ref_seq=scaffold1221_contigs=11, transcript_loc=scaffold1221_contigs=11:26662-27463 Augustus predicted protein sequence Tobacco scaffold1221_contigs=11~26662-27463 Vps5 PF09325.5 g62221.t1 - 0.028 13.6 0.2 0.038 13.2 0.1 1.2 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:228888-230927 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~228888-230927 zf-LITAF-like PF10601.4 g84803.t1 - 0.038 13.8 0.5 0.13 12.1 0.4 1.9 1 0 0 1 1 1 0 LITAF-like zinc ribbon domain | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:646681-647313 Augustus predicted protein sequence Tobacco scaffold1827_contigs=21~646681-647313 ATHILA PF03078.10 g89401.t1 - 0.000079 21.4 0.5 0.00023 19.8 0.3 1.7 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:56729-57307 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~56729-57307 Podoplanin PF05808.6 g56433.t1 - 0.025 14.1 2.3 0.035 13.6 1.6 1.2 1 0 0 1 1 1 0 Podoplanin | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:122270-122852 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~122270-122852 DUF3318 PF11780.3 g102168.t1 - 0.072 12.6 0 0.085 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:251573-251815 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~251573-251815 LTV PF04180.9 g96453.t1 - 0.095 12.1 0 0.095 12.1 0 1 1 0 0 1 1 1 0 Low temperature viability protein | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:22315-22578 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~22315-22578 Nucleoplasmin PF03066.10 g87955.t1 - 0.2 11.1 2.5 0.2 11.1 1.7 1.1 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1904_contigs=8, transcript_loc=scaffold1904_contigs=8:11350-11601 Augustus predicted protein sequence Tobacco scaffold1904_contigs=8~11350-11601 Cytadhesin_P30 PF07271.6 g71096.t1 - 3.6 6.7 9.2 3.5 6.8 6.4 1.1 1 0 0 1 1 1 0 Cytadhesin P30/P32 | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:29265-30456 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~29265-30456 ATHILA PF03078.10 g86097.t1 - 0.00028 19.6 0.1 0.00029 19.5 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:170986-171309 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~170986-171309 Shisa PF13908.1 g64465.t1 - 0.52 10.4 6.5 3.5 7.7 4.5 1.9 1 1 0 1 1 1 0 Wnt and FGF inhibitory regulator | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:144649-145630 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~144649-145630 EBV-NA3 PF05009.7 g1608.t1 - 0.43 9.8 2 0.45 9.7 1.4 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:1458-1691 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~1458-1691 DUF1510 PF07423.6 g11230.t1 - 5 6.4 12.2 0.16 11.3 3.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:387608-390847 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~387608-390847 DUF1762 PF08574.5 g82840.t1 - 1.9 8.9 9.4 0.35 11.3 3.5 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1762) | Ref_seq=scaffold1773_contigs=11, transcript_loc=scaffold1773_contigs=11:54635-56747 Augustus predicted protein sequence Tobacco scaffold1773_contigs=11~54635-56747 DUF2215 PF10225.4 g81703.t1 - 0.22 10.9 1.6 0.35 10.2 1.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:6462-8513 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~6462-8513 Las1 PF04031.8 g112367.t1 - 0.033 13.8 0 43 3.7 0 3.1 3 0 0 3 3 3 0 Las1-like | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:218134-221316 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~218134-221316 Metal_resist PF13801.1 g72357.t1 - 0.083 12.8 1.5 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 Heavy-metal resistance | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:879991-880305 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~879991-880305 DUF1264 PF06884.6 g85291.t1 - 0.071 12.5 0 0.076 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:136822-137315 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~136822-137315 CAF-1_p150 PF11600.3 g86194.t1 - 1.1 8.5 39.7 1.3 8.3 27.5 1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:190345-190626 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~190345-190626 ATHILA PF03078.10 g72008.t1 - 0.00000028 29.5 0 0.00000036 29.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:96870-97624 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~96870-97624 YqzE PF14038.1 g67596.t1 - 0.017 14.8 2.5 0.034 13.9 1.7 1.4 1 0 0 1 1 1 0 YqzE-like protein | Ref_seq=scaffold1450_contigs=4, transcript_loc=scaffold1450_contigs=4:21064-21414 Augustus predicted protein sequence Tobacco scaffold1450_contigs=4~21064-21414 DBD_Tnp_Mut PF03108.10 g25437.t1 - 0.024 14.1 0 0.037 13.5 0 1.3 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold696_contigs=4, transcript_loc=scaffold696_contigs=4:927-1538 Augustus predicted protein sequence Tobacco scaffold696_contigs=4~927-1538 V_ATPase_I PF01496.14 g39703.t1 - 0.0025 15.7 4 0.0037 15.1 2.8 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:61336-65035 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~61336-65035 RPAP1_N PF08621.5 g12378.t1 - 0.12 11.9 0.3 0.28 10.7 0.2 1.6 1 0 0 1 1 1 0 RPAP1-like, N-terminal | Ref_seq=scaffold426_contigs=7, transcript_loc=scaffold426_contigs=7:112607-115081 Augustus predicted protein sequence Tobacco scaffold426_contigs=7~112607-115081 DUF1479 PF07350.7 g48917.t1 - 0.072 11.5 0 0.09 11.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1479) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:611240-612528 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~611240-612528 CENP-O PF09496.5 g107179.t1 - 0.0045 17.1 0.5 0.0082 16.3 0.3 1.7 1 1 0 1 1 1 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:842950-843378 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~842950-843378 PAS_4 PF08448.5 g15992.t1 - 0.13 12.3 0.1 0.2 11.6 0 1.3 1 0 0 1 1 1 0 PAS fold | Ref_seq=scaffold507_contigs=4, transcript_loc=scaffold507_contigs=4:253962-255496 Augustus predicted protein sequence Tobacco scaffold507_contigs=4~253962-255496 Toxin_29 PF08116.6 g37148.t1 - 0.0066 16.2 0.2 0.0093 15.7 0.2 1.3 1 0 0 1 1 1 1 PhTx neurotoxin family | Ref_seq=scaffold909_contigs=6, transcript_loc=scaffold909_contigs=6:263583-264223 Augustus predicted protein sequence Tobacco scaffold909_contigs=6~263583-264223 QueF PF14489.1 g69721.t1 - 0.076 12.9 0.2 0.15 12 0.1 1.7 1 1 0 1 1 1 0 QueF-like protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:998193-998603 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~998193-998603 FXR1P_C PF12235.3 g55017.t1 - 0.43 10.6 4.3 4 7.5 0.4 2.2 2 0 0 2 2 2 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:364005-365273 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~364005-365273 CAP_N PF01213.14 g93501.t1 - 0.057 12.7 4.9 0.071 12.3 3.4 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2021_contigs=4, transcript_loc=scaffold2021_contigs=4:54269-54934 Augustus predicted protein sequence Tobacco scaffold2021_contigs=4~54269-54934 HpaP PF09483.5 g24978.t1 - 0.26 11.2 2.6 0.19 11.6 0.7 1.5 2 0 0 2 2 2 0 Type III secretion protein (HpaP) | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:156202-156910 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~156202-156910 Kelch_2 PF07646.10 g58233.t1 - 0.087 12.6 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Kelch motif | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:383836-384956 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~383836-384956 CTP_transf_3 PF02348.14 g122906.t1 - 0.12 12 1 0.17 11.4 0.7 1.2 1 1 0 1 1 1 0 Cytidylyltransferase | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:85893-86297 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~85893-86297 TBCC PF07986.7 g70997.t1 - 0.088 12.2 0.1 0.17 11.2 0 1.5 2 0 0 2 2 2 0 Tubulin binding cofactor C | Ref_seq=scaffold1499_contigs=18, transcript_loc=scaffold1499_contigs=18:234037-234810 Augustus predicted protein sequence Tobacco scaffold1499_contigs=18~234037-234810 BUD22 PF09073.5 g78266.t1 - 0.17 10.8 44.2 0.21 10.6 30.6 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1647_contigs=32, transcript_loc=scaffold1647_contigs=32:127508-129500 Augustus predicted protein sequence Tobacco scaffold1647_contigs=32~127508-129500 TOBE PF03459.12 g21464.t1 - 0.16 12.1 6.1 12 6.1 0.1 3.6 2 1 2 4 4 4 0 TOBE domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:547733-548676 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~547733-548676 Mor PF08765.6 g122572.t1 - 0.1 12.4 0 0.18 11.5 0 1.4 1 0 0 1 1 1 0 Mor transcription activator family | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:291894-294222 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~291894-294222 IFP_35_N PF07334.8 g90964.t1 - 0.00035 20.4 1.2 0.00079 19.3 0.8 1.6 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1965_contigs=7, transcript_loc=scaffold1965_contigs=7:84689-85015 Augustus predicted protein sequence Tobacco scaffold1965_contigs=7~84689-85015 CbiA PF01656.18 g89256.t1 - 0.19 11 0.5 0.24 10.7 0.4 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:162303-162719 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~162303-162719 GST_C_2 PF13410.1 g68283.t1 - 0.13 12.1 0 0.18 11.7 0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:101154-101477 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~101154-101477 Gly-rich_Ago1 PF12764.2 g118028.t1 - 0.054 14.1 3.2 0.065 13.8 1.5 1.7 1 1 1 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold2698_contigs=8, transcript_loc=scaffold2698_contigs=8:69977-70969 Augustus predicted protein sequence Tobacco scaffold2698_contigs=8~69977-70969 DUF4029 PF13221.1 g129328.t1 - 0.11 12.8 0.2 0.13 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4029) | Ref_seq=scaffold2940_contigs=1, transcript_loc=scaffold2940_contigs=1:15074-16141 Augustus predicted protein sequence Tobacco scaffold2940_contigs=1~15074-16141 DUF2215 PF10225.4 g87429.t1 - 0.042 13.2 0.5 0.05 13 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:60803-61225 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~60803-61225 Ins145_P3_rec PF08709.6 g27936.t1 - 0.00067 18.7 0 0.00071 18.6 0 1.1 1 0 0 1 1 1 1 Inositol 1,4,5-trisphosphate/ryanodine receptor | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:610216-610428 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~610216-610428 MACPF PF01823.14 g35192.t1 - 0.035 13.8 1.8 0.04 13.6 1.2 1 1 0 0 1 1 1 0 MAC/Perforin domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:177108-177419 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~177108-177419 DUF2347 PF09804.4 g130264.t1 - 0.009 15.3 0.9 1.3 8.2 0.1 2 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2347) | Ref_seq=scaffold3809_contigs=1, transcript_loc=scaffold3809_contigs=1:1085-1432 Augustus predicted protein sequence Tobacco scaffold3809_contigs=1~1085-1432 Zip PF02535.17 g117624.t1 - 0.0012 17.9 7.1 0.0013 17.7 4.9 1.2 1 0 0 1 1 1 1 ZIP Zinc transporter | Ref_seq=scaffold2689_contigs=12, transcript_loc=scaffold2689_contigs=12:186517-186903 Augustus predicted protein sequence Tobacco scaffold2689_contigs=12~186517-186903 NAM-associated PF14303.1 g82479.t1 - 0.083 13.2 13.6 0.21 11.9 9.4 1.7 1 1 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:59926-61504 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~59926-61504 SVA PF05326.6 g5390.t1 - 0.015 15 0 0.023 14.4 0 1.2 1 0 0 1 1 1 0 Seminal vesicle autoantigen (SVA) | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:154900-155310 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~154900-155310 DUF2383 PF09537.5 g7011.t1 - 0.068 13.4 0.1 0.095 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:22589-22900 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~22589-22900 PPR PF01535.15 g12173.t1 - 0.13 12.3 0 0.25 11.4 0 1.5 1 0 0 1 1 1 0 PPR repeat | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:210342-211958 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~210342-211958 uDENN PF03456.13 g120867.t1 - 0.00032 20.6 0.2 0.061 13.3 0 2.6 3 0 0 3 3 3 1 uDENN domain | Ref_seq=scaffold2729_contigs=11, transcript_loc=scaffold2729_contigs=11:391273-392466 Augustus predicted protein sequence Tobacco scaffold2729_contigs=11~391273-392466 IRF-3 PF10401.4 g71869.t1 - 0.0094 15.5 0 0.012 15.1 0 1.1 1 0 0 1 1 1 1 Interferon-regulatory factor 3 | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:235892-236862 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~235892-236862 Glyco_transf_4 PF13439.1 g101166.t1 - 0.12 12.1 0 0.13 12 0 1 1 0 0 1 1 1 0 Glycosyltransferase Family 4 | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:183731-183979 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~183731-183979 ATHILA PF03078.10 g42696.t1 - 0.00031 19.4 0.1 0.0032 16.1 0 1.9 1 1 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:377761-378078 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~377761-378078 SRP72 PF08492.7 g36995.t1 - 0.031 14.6 3.3 0.045 14.1 2.3 1.4 1 1 0 1 1 1 0 SRP72 RNA-binding domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:65595-65858 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~65595-65858 DBD_Tnp_Mut PF03108.10 g27589.t1 - 0.00027 20.4 0 0.0005 19.5 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold728_contigs=3, transcript_loc=scaffold728_contigs=3:35107-35648 Augustus predicted protein sequence Tobacco scaffold728_contigs=3~35107-35648 RNase_H2-Ydr279 PF09468.5 g73050.t1 - 0.34 10 5.8 0.25 10.4 3 1.6 2 0 0 2 2 2 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:145008-146178 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~145008-146178 Peptidase_C10 PF01640.12 g115730.t1 - 0.0039 16.9 0.2 0.0051 16.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase C10 family | Ref_seq=scaffold2661_contigs=2, transcript_loc=scaffold2661_contigs=2:132950-133552 Augustus predicted protein sequence Tobacco scaffold2661_contigs=2~132950-133552 EMP24_GP25L PF01105.19 g56521.t1 - 0.0056 16.4 0 0.0062 16.2 0 1.1 1 0 0 1 1 1 1 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:299477-299902 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~299477-299902 DUF4527 PF15030.1 g101859.t1 - 0.0051 16.1 0.8 0.0085 15.4 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4527) | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:35122-36289 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~35122-36289 DUF1719 PF08224.6 g2900.t1 - 0.16 10.9 0.3 0.15 11 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:5248-5448 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~5248-5448 WEMBL PF05701.6 g106894.t1 - 0.019 13.4 1.2 0.022 13.2 0.9 1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light | Ref_seq=scaffold2381_contigs=8, transcript_loc=scaffold2381_contigs=8:143852-144097 Augustus predicted protein sequence Tobacco scaffold2381_contigs=8~143852-144097 KN_motif PF12075.3 g91293.t1 - 1.1 9 4.1 15 5.4 0.2 3 3 0 0 3 3 3 0 KN motif | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:278374-282001 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~278374-282001 Peptidase_C98 PF15499.1 g83092.t1 - 0.021 14.1 0.2 0.023 13.9 0.1 1.1 1 0 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:86053-86322 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~86053-86322 HTH_WhiA PF02650.9 g116318.t1 - 0.043 14.2 1 0.25 11.7 0.1 2 1 1 1 2 2 2 0 WhiA C-terminal HTH domain | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:78828-79061 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~78828-79061 Sensor PF13796.1 g55076.t1 - 0.002 17.7 6.5 0.0023 17.5 4.5 1 1 0 0 1 1 1 1 Putative sensor | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:522391-522681 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~522391-522681 SAND PF01342.16 g118054.t1 - 0.12 12.1 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 SAND domain | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:51611-51820 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~51611-51820 DUF4105 PF13387.1 g2994.t1 - 0.046 12.8 0 0.065 12.4 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:84788-85416 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~84788-85416 Dishevelled PF02377.10 g56940.t1 - 0.41 10.8 4.8 0.24 11.6 0.5 2 2 0 0 2 2 2 0 Dishevelled specific domain | Ref_seq=scaffold1242_contigs=5, transcript_loc=scaffold1242_contigs=5:171535-172588 Augustus predicted protein sequence Tobacco scaffold1242_contigs=5~171535-172588 Gar1 PF04410.9 g104377.t1 - 0.24 10.8 2.1 0.37 10.2 1.4 1.3 1 0 0 1 1 1 0 Gar1/Naf1 RNA binding region | Ref_seq=scaffold2338_contigs=16, transcript_loc=scaffold2338_contigs=16:34676-35437 Augustus predicted protein sequence Tobacco scaffold2338_contigs=16~34676-35437 Trehalase PF01204.13 g124131.t1 - 0.098 11.2 4.2 0.1 11.2 2.9 1 1 0 0 1 1 1 0 Trehalase | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1407905-1408255 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1407905-1408255 Shugoshin_C PF07557.6 g74221.t1 - 0.028 13.9 1.3 0.052 13 0.9 1.5 1 0 0 1 1 1 0 Shugoshin C terminus | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:794060-795680 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~794060-795680 TilS_C PF11734.3 g72878.t1 - 0.12 11.6 0.4 0.16 11.1 0.2 1.3 1 1 0 1 1 1 0 TilS substrate C-terminal domain | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:71543-72125 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~71543-72125 UBN2 PF14223.1 g124178.t1 - 0.038 13.7 2.3 0.085 12.6 0 2.2 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1501497-1502153 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1501497-1502153 DUF2443 PF10398.4 g89647.t1 - 0.086 12.6 0 0.12 12.1 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2443) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:51499-51711 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~51499-51711 CENP-F_N PF10481.4 g73710.t1 - 0.012 15 3.3 0.015 14.6 2.3 1.2 1 0 0 1 1 1 0 Cenp-F N-terminal domain | Ref_seq=scaffold1542_contigs=5, transcript_loc=scaffold1542_contigs=5:247693-250753 Augustus predicted protein sequence Tobacco scaffold1542_contigs=5~247693-250753 DUF1658 PF07871.6 g124140.t1 - 0.83 9.3 4.4 16 5.2 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1658) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1426042-1426494 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1426042-1426494 DUF2215 PF10225.4 g15507.t1 - 0.0095 15.4 2.3 0.012 15 1.6 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:505912-506292 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~505912-506292 Eclosion PF04736.7 g95584.t1 - 0.013 14.9 0.1 0.13 11.6 0 2.1 1 1 1 2 2 2 0 Eclosion hormone | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:96305-96760 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~96305-96760 GNAT_acetyltr_2 PF13718.1 g113563.t1 - 0.01 15.2 0 0.011 15 0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase 2 | Ref_seq=scaffold2636_contigs=10, transcript_loc=scaffold2636_contigs=10:95289-97497 Augustus predicted protein sequence Tobacco scaffold2636_contigs=10~95289-97497 PetG PF02529.10 g54292.t1 - 0.055 12.9 0.1 1 8.9 0 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:159406-159759 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~159406-159759 DUF772 PF05598.6 g48749.t1 - 0.033 14 0 0.044 13.6 0 1.2 1 0 0 1 1 1 0 Transposase domain (DUF772) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:277672-278071 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~277672-278071 SWIM PF04434.12 g125344.t1 - 0.017 14.5 0 0.04 13.4 0 1.6 1 0 0 1 1 1 0 SWIM zinc finger | Ref_seq=scaffold2772_contigs=1, transcript_loc=scaffold2772_contigs=1:65831-67948 Augustus predicted protein sequence Tobacco scaffold2772_contigs=1~65831-67948 zf-CCHC PF00098.18 g102153.t1 - 0.0087 15.9 3.2 0.014 15.3 2.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:218084-218552 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~218084-218552 Sin3_corepress PF08295.7 g67432.t1 - 0.071 12.8 0.1 0.11 12.2 0 1.3 1 0 0 1 1 1 0 Sin3 family co-repressor | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:264958-265539 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~264958-265539 SAGA-Tad1 PF12767.2 g51428.t1 - 0.099 12.2 1.8 0.11 12.1 1.2 1.1 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:8428-8928 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~8428-8928 zf-CCHC_4 PF14392.1 g25275.t1 - 0.0015 18.1 1.3 0.0029 17.2 0.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold692_contigs=2, transcript_loc=scaffold692_contigs=2:4879-5508 Augustus predicted protein sequence Tobacco scaffold692_contigs=2~4879-5508 DUF1117 PF06547.7 g3406.t1 - 0.094 12.8 0.7 0.12 12.4 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1117) | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:6686-7204 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~6686-7204 Peptidase_S49_N PF08496.5 g66577.t1 - 0.042 13.6 0.5 0.051 13.3 0.3 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:127126-127519 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~127126-127519 Herpes_ICP4_C PF03585.9 g108087.t1 - 0.1 11.2 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein C-terminal region | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:230163-231987 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~230163-231987 Nucleocapsid-N PF11030.3 g100034.t1 - 9.4 6 7.1 16 5.2 4.9 1.5 1 1 0 1 1 1 0 Nucleocapsid protein N | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:344018-344353 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~344018-344353 SCRL PF06876.7 g12713.t1 - 0.0064 16.4 2.4 0.015 15.2 1.6 1.6 1 0 0 1 1 1 1 Plant self-incompatibility response (SCRL) protein | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:322026-324734 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~322026-324734 Integrase_AP2 PF14657.1 g74805.t1 - 1.6 8.5 3.5 21 4.9 0.1 3 3 0 0 3 3 3 0 AP2-like DNA-binding integrase domain | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:110919-112424 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~110919-112424 Aha1_N PF09229.6 g6375.t1 - 0.04 13.7 0.1 0.083 12.7 0 1.5 1 1 1 2 2 2 0 Activator of Hsp90 ATPase, N-terminal | Ref_seq=scaffold296_contigs=6, transcript_loc=scaffold296_contigs=6:9553-9822 Augustus predicted protein sequence Tobacco scaffold296_contigs=6~9553-9822 DUF336 PF03928.9 g124803.t1 - 0.064 13 0 0.11 12.2 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF336) | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:189705-190502 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~189705-190502 zf-CCHC PF00098.18 g114676.t1 - 0.016 15.1 5.1 0.016 15.1 3.5 2.2 3 0 0 3 3 3 0 Zinc knuckle | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:186578-187118 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~186578-187118 DUF842 PF05811.8 g77039.t1 - 0.068 12.6 1.2 0.075 12.4 0.8 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF842) | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:77744-77992 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~77744-77992 DUF2890 PF11081.3 g15357.t1 - 0.036 14.1 0.8 0.059 13.4 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2890) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:115726-116043 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~115726-116043 DUF572 PF04502.8 g57555.t1 - 6.1 5.9 8.7 10 5.2 5.8 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF572) | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:146729-147361 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~146729-147361 DUF1582 PF07621.6 g92339.t1 - 1.2 9.2 4 9 6.4 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1582) | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:302758-302973 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~302758-302973 MUG2_C PF08593.5 g106569.t1 - 3.2 8 5.8 8.9 6.6 1.3 3 2 1 1 3 3 3 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:94247-94711 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~94247-94711 Pilt PF15453.1 g20320.t1 - 0.58 9.7 4.3 0.58 9.7 3 1.1 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:27819-28049 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~27819-28049 zf-CCHC PF00098.18 g85257.t1 - 2.3 8.2 6.7 0.31 11 1.4 2.1 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:70787-71374 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~70787-71374 DUF1191 PF06697.7 g80438.t1 - 0.084 11.6 0.1 0.1 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1191) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:4688-5146 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~4688-5146 PLAC9 PF15205.1 g34863.t1 - 0.012 15.9 0 0.023 14.9 0 1.4 1 0 0 1 1 1 0 Placenta-specific protein 9 | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:85557-85922 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~85557-85922 U1snRNP70_N PF12220.3 g23295.t1 - 0.038 14.2 0 0.092 13 0 1.7 1 1 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:61999-62824 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~61999-62824 DUF1394 PF07159.7 g77599.t1 - 0.097 11.7 0.1 0.1 11.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1394) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:76736-77634 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~76736-77634 Xpo1 PF08389.7 g115815.t1 - 0.13 12.1 0.1 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 Exportin 1-like protein | Ref_seq=scaffold2665_contigs=9, transcript_loc=scaffold2665_contigs=9:7017-10330 Augustus predicted protein sequence Tobacco scaffold2665_contigs=9~7017-10330 Spore_III_AF PF09581.5 g69275.t1 - 0.1 12.4 0.2 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) | Ref_seq=scaffold1484_contigs=2, transcript_loc=scaffold1484_contigs=2:120734-124016 Augustus predicted protein sequence Tobacco scaffold1484_contigs=2~120734-124016 Methyltrn_RNA_2 PF04013.7 g83869.t1 - 0.038 13.5 0.1 0.047 13.2 0.1 1.1 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:90721-91547 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~90721-91547 ComJ PF11033.3 g29100.t1 - 0.12 12 0 0.12 12 0 1.1 1 0 0 1 1 1 0 Competence protein J (ComJ) | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:108917-109192 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~108917-109192 Gly-rich_Ago1 PF12764.2 g69323.t1 - 0.72 10.5 5.7 10 6.7 0.3 2.1 2 0 0 2 2 2 0 Glycine-rich region of argonaut | Ref_seq=scaffold1485_contigs=2, transcript_loc=scaffold1485_contigs=2:123448-123940 Augustus predicted protein sequence Tobacco scaffold1485_contigs=2~123448-123940 Med6 PF04934.9 g78120.t1 - 0.07 12.6 0.2 0.087 12.3 0.1 1.2 1 0 0 1 1 1 0 MED6 mediator sub complex component | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:457760-458155 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~457760-458155 FH2 PF02181.18 g63312.t1 - 0.02 13.8 0 0.02 13.7 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1371_contigs=10, transcript_loc=scaffold1371_contigs=10:204411-204731 Augustus predicted protein sequence Tobacco scaffold1371_contigs=10~204411-204731 LRR_8 PF13855.1 g120387.t1 - 0.00085 19 0.1 0.0013 18.4 0 1.4 1 0 0 1 1 1 1 Leucine rich repeat | Ref_seq=scaffold2724_contigs=11, transcript_loc=scaffold2724_contigs=11:5342-5545 Augustus predicted protein sequence Tobacco scaffold2724_contigs=11~5342-5545 EBV-NA3 PF05009.7 g23836.t1 - 0.14 11.4 1.3 0.14 11.3 0.9 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:191367-191594 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~191367-191594 PP-binding PF00550.20 g64658.t1 - 0.054 13.7 0.1 0.3 11.3 0 2.2 1 1 1 2 2 2 0 Phosphopantetheine attachment site | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:227524-228810 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~227524-228810 Cnd1_N PF12922.2 g126259.t1 - 0.076 12.6 0 0.099 12.2 0 1.1 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1, N-term | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:60600-61663 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~60600-61663 Phage_P2_GpE PF06528.7 g118536.t1 - 0.0035 16.7 1.1 0.0082 15.5 0.8 1.7 1 1 0 1 1 1 1 Phage P2 GpE | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:134035-134412 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~134035-134412 BRCA2 PF00634.13 g86910.t1 - 0.13 11.6 0 0.32 10.3 0 1.7 1 0 0 1 1 1 0 BRCA2 repeat | Ref_seq=scaffold1864_contigs=28, transcript_loc=scaffold1864_contigs=28:16651-17139 Augustus predicted protein sequence Tobacco scaffold1864_contigs=28~16651-17139 OprF PF05736.6 g23677.t1 - 0.091 12.2 0 0.11 12 0 1.1 1 0 0 1 1 1 0 OprF membrane domain | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:384638-385809 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~384638-385809 PBP1_TM PF14812.1 g6990.t1 - 7.7 6.8 8.5 38 4.6 5.5 2.2 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold306_contigs=7, transcript_loc=scaffold306_contigs=7:293927-294373 Augustus predicted protein sequence Tobacco scaffold306_contigs=7~293927-294373 DUF1128 PF06569.6 g26484.t1 - 0.069 12.8 0 0.093 12.4 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1128) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:162506-162769 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~162506-162769 SOXp PF12336.3 g128835.t1 - 0.14 12.8 0 0.16 12.6 0 1.1 1 0 0 1 1 1 0 SOX transcription factor | Ref_seq=scaffold2893_contigs=1, transcript_loc=scaffold2893_contigs=1:9390-10441 Augustus predicted protein sequence Tobacco scaffold2893_contigs=1~9390-10441 CCDC84 PF14968.1 g2620.t1 - 0.16 11.4 5.3 0.22 10.9 3.7 1.1 1 0 0 1 1 1 0 Coiled coil protein 84 | Ref_seq=scaffold215_contigs=2, transcript_loc=scaffold215_contigs=2:28585-29746 Augustus predicted protein sequence Tobacco scaffold215_contigs=2~28585-29746 CSD PF00313.17 g80036.t1 - 0.000012 24.9 0.1 0.00002 24.2 0.1 1.3 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain | Ref_seq=scaffold1707_contigs=8, transcript_loc=scaffold1707_contigs=8:231150-231682 Augustus predicted protein sequence Tobacco scaffold1707_contigs=8~231150-231682 AKAP2_C PF15304.1 g120032.t1 - 1.3 8.5 15.5 1.7 8.2 10.8 1.2 1 0 0 1 1 1 0 A-kinase anchor protein 2 C-terminus | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:282588-282812 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~282588-282812 DUF2451 PF10474.4 g68960.t1 - 0.11 12.2 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2451) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:204554-205045 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~204554-205045 Bac_rhamnosid_N PF08531.5 g36538.t1 - 0.11 12 0 0.15 11.5 0 1.2 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain | Ref_seq=scaffold890_contigs=10, transcript_loc=scaffold890_contigs=10:230244-232090 Augustus predicted protein sequence Tobacco scaffold890_contigs=10~230244-232090 DUF4608 PF15381.1 g35398.t1 - 0.023 14.8 0.3 0.065 13.3 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4608) | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:165916-166303 Augustus predicted protein sequence Tobacco scaffold871_contigs=9~165916-166303 UreF PF01730.11 g109069.t1 - 0.019 15 0.6 0.028 14.5 0.4 1.2 1 0 0 1 1 1 0 UreF | Ref_seq=scaffold2483_contigs=12, transcript_loc=scaffold2483_contigs=12:42086-43409 Augustus predicted protein sequence Tobacco scaffold2483_contigs=12~42086-43409 Mito_fiss_reg PF05308.6 g125588.t1 - 0.077 12.3 0.2 0.086 12.1 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2777_contigs=1, transcript_loc=scaffold2777_contigs=1:4888-5673 Augustus predicted protein sequence Tobacco scaffold2777_contigs=1~4888-5673 IgG_binding_B PF01378.12 g27995.t1 - 0.017 14.9 0 0.025 14.3 0 1.2 1 0 0 1 1 1 0 B domain | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:722196-722540 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~722196-722540 Phosphoprotein PF00922.12 g30506.t1 - 4 6.5 13.5 0.4 9.8 4.9 2 2 0 0 2 2 2 0 Vesiculovirus phosphoprotein | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1078301-1078999 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1078301-1078999 PepSY_TM_2 PF13703.1 g38553.t1 - 0.15 12.2 0.7 0.21 11.7 0.5 1.2 1 0 0 1 1 1 0 PepSY-associated TM helix | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:41310-41666 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~41310-41666 Hum_adeno_E3A PF05393.6 g76393.t1 - 0.012 15.3 0 0.013 15.1 0 1.1 1 0 0 1 1 1 0 Human adenovirus early E3A glycoprotein | Ref_seq=scaffold1613_contigs=9, transcript_loc=scaffold1613_contigs=9:124465-124665 Augustus predicted protein sequence Tobacco scaffold1613_contigs=9~124465-124665 PEGSRP PF07623.6 g97129.t1 - 0.000094 21.6 2.7 0.21 10.9 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1584) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:30320-33590 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~30320-33590 DUF1286 PF06939.6 g72298.t1 - 0.054 13.6 0 0.088 12.9 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1286) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:737512-738293 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~737512-738293 HOOK PF05622.7 g118127.t1 - 0.024 12.4 0.1 0.026 12.3 0.1 1 1 0 0 1 1 1 0 HOOK protein | Ref_seq=scaffold2699_contigs=36, transcript_loc=scaffold2699_contigs=36:294711-294953 Augustus predicted protein sequence Tobacco scaffold2699_contigs=36~294711-294953 AP-5_subunit_s1 PF15001.1 g122557.t1 - 0.14 12 0 0.19 11.6 0 1.1 1 0 0 1 1 1 0 AP-5 complex subunit sigma-1 | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:253023-253398 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~253023-253398 DUF3143 PF11341.3 g129974.t1 - 0.1 12.4 0 11 5.9 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3143) | Ref_seq=scaffold3283_contigs=1, transcript_loc=scaffold3283_contigs=1:1524-2629 Augustus predicted protein sequence Tobacco scaffold3283_contigs=1~1524-2629 ComK PF06338.6 g72249.t1 - 0.0078 15.6 0 0.009 15.4 0 1.1 1 0 0 1 1 1 1 ComK protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:617236-617565 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~617236-617565 bZIP_1 PF00170.16 g43410.t1 - 0.086 12.8 0.6 0.14 12.1 0.4 1.3 1 0 0 1 1 1 0 bZIP transcription factor | Ref_seq=scaffold1015_contigs=8, transcript_loc=scaffold1015_contigs=8:162904-163363 Augustus predicted protein sequence Tobacco scaffold1015_contigs=8~162904-163363 zf-CCHC_3 PF13917.1 g67225.t1 - 0.14 11.9 0 0.18 11.5 0 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:830559-830762 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~830559-830762 TOBE_3 PF12857.2 g118821.t1 - 0.057 13.2 0 0.094 12.5 0 1.3 1 0 0 1 1 1 0 TOBE-like domain | Ref_seq=scaffold2708_contigs=2, transcript_loc=scaffold2708_contigs=2:24554-24904 Augustus predicted protein sequence Tobacco scaffold2708_contigs=2~24554-24904 Glyoxalase_4 PF13669.1 g14503.t1 - 0.054 13.5 0 0.074 13 0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:28070-28589 Augustus predicted protein sequence Tobacco scaffold476_contigs=10~28070-28589 ESSS PF10183.4 g87878.t1 - 0.023 15 0.3 0.038 14.3 0.1 1.4 1 1 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) | Ref_seq=scaffold1901_contigs=10, transcript_loc=scaffold1901_contigs=10:81751-82017 Augustus predicted protein sequence Tobacco scaffold1901_contigs=10~81751-82017 Fez1 PF06818.10 g76537.t1 - 0.032 14.2 0.1 0.04 13.9 0 1.1 1 0 0 1 1 1 0 Fez1 | Ref_seq=scaffold1615_contigs=2, transcript_loc=scaffold1615_contigs=2:6929-7324 Augustus predicted protein sequence Tobacco scaffold1615_contigs=2~6929-7324 HC2 PF07382.6 g26380.t1 - 0.034 13.9 2.4 0.037 13.8 1.7 1.1 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:232718-232942 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~232718-232942 zf-BED PF02892.10 g95084.t1 - 0.000076 22.3 5.6 0.03 14 1.1 2.4 2 0 0 2 2 2 2 BED zinc finger | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:51-3214 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~51-3214 DUF1510 PF07423.6 g51283.t1 - 0.057 12.7 4.8 0.064 12.6 2.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1152_contigs=9, transcript_loc=scaffold1152_contigs=9:338523-339991 Augustus predicted protein sequence Tobacco scaffold1152_contigs=9~338523-339991 UBN2_3 PF14244.1 g121018.t1 - 0.0033 16.9 0.2 0.0039 16.7 0.1 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:223611-223892 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~223611-223892 MRP-S26 PF14943.1 g22655.t1 - 0.086 12.3 2.5 0.12 11.9 1.8 1.2 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:71541-71948 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~71541-71948 DUF2786 PF10979.3 g30103.t1 - 0.65 9.7 0 0.65 9.7 0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2786) | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:423278-424060 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~423278-424060 STAT_alpha PF01017.15 g110386.t1 - 0.003 17.2 0.5 0.0036 17 0.3 1 1 0 0 1 1 1 1 STAT protein, all-alpha domain | Ref_seq=scaffold2543_contigs=34, transcript_loc=scaffold2543_contigs=34:39359-39748 Augustus predicted protein sequence Tobacco scaffold2543_contigs=34~39359-39748 SERTA PF06031.8 g65783.t1 - 0.042 13.1 0.4 0.062 12.6 0.3 1.3 1 0 0 1 1 1 0 SERTA motif | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:21762-22556 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~21762-22556 DUF1180 PF06679.7 g105542.t1 - 0.037 13.9 0.6 0.05 13.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) | Ref_seq=scaffold2356_contigs=4, transcript_loc=scaffold2356_contigs=4:61917-63894 Augustus predicted protein sequence Tobacco scaffold2356_contigs=4~61917-63894 Med12 PF09497.5 g74271.t1 - 0.026 14.4 0.2 0.22 11.5 0.2 2 1 1 0 1 1 1 0 Transcription mediator complex subunit Med12 | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:52435-52716 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~52435-52716 Bactofilin PF04519.8 g16326.t1 - 0.061 13.3 0.5 0.14 12.1 0.1 1.8 1 1 0 1 1 1 0 Polymer-forming cytoskeletal | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:60022-61100 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~60022-61100 Plant_tran PF04827.9 g117812.t1 - 0.0094 15.3 0 0.021 14.2 0 1.5 1 1 1 2 2 2 1 Plant transposon protein | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:154599-155602 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~154599-155602 DUF466 PF04328.8 g83386.t1 - 0.094 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF466) | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:1-1942 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~1-1942 DUF4145 PF13643.1 g49731.t1 - 0.16 11.8 0 0.2 11.5 0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:25714-26702 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~25714-26702 PhosphMutase PF10143.4 g115378.t1 - 0.059 13 0.3 0.084 12.5 0.2 1.2 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:191615-192285 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~191615-192285 DUF4240 PF14024.1 g92986.t1 - 0.015 15.1 0.9 0.023 14.5 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4240) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:413666-414137 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~413666-414137 Orexin_rec2 PF03827.8 g15597.t1 - 0.14 12.2 0 0.2 11.7 0 1.3 1 0 0 1 1 1 0 Orexin receptor type 2 | Ref_seq=scaffold501_contigs=2, transcript_loc=scaffold501_contigs=2:23376-23914 Augustus predicted protein sequence Tobacco scaffold501_contigs=2~23376-23914 AMP-binding_C PF13193.1 g129914.t1 - 0.000091 23.3 0.5 0.016 16.1 0 2.9 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain | Ref_seq=scaffold3194_contigs=1, transcript_loc=scaffold3194_contigs=1:2727-3844 Augustus predicted protein sequence Tobacco scaffold3194_contigs=1~2727-3844 IFP_35_N PF07334.8 g35464.t1 - 0.097 12.6 2.9 0.27 11.2 2 1.8 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:125233-125757 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~125233-125757 DDE_Tnp_4 PF13359.1 g42650.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 DDE superfamily endonuclease | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:258326-258694 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~258326-258694 Prp31_C PF09785.4 g89185.t1 - 0.099 13 0.1 0.13 12.6 0.1 1.1 1 0 0 1 1 1 0 Prp31 C terminal domain | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:42549-43064 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~42549-43064 zf-Di19 PF05605.7 g87391.t1 - 0.015 15.4 3.7 0.021 14.9 2.5 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding | Ref_seq=scaffold1878_contigs=7, transcript_loc=scaffold1878_contigs=7:5764-6012 Augustus predicted protein sequence Tobacco scaffold1878_contigs=7~5764-6012 Pox_A_type_inc PF04508.7 g13809.t1 - 0.068 12.9 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:127517-128795 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~127517-128795 Chorion_2 PF03964.10 g108914.t1 - 0.016 15.7 5.7 0.018 15.5 3.9 1.2 1 0 0 1 1 1 0 Chorion family 2 | Ref_seq=scaffold2456_contigs=4, transcript_loc=scaffold2456_contigs=4:90666-90908 Augustus predicted protein sequence Tobacco scaffold2456_contigs=4~90666-90908 PBP1_TM PF14812.1 g54651.t1 - 0.26 11.6 2.7 0.3 11.4 1.9 1.3 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1211_contigs=3, transcript_loc=scaffold1211_contigs=3:37741-38469 Augustus predicted protein sequence Tobacco scaffold1211_contigs=3~37741-38469 HTH_Tnp_Tc5 PF03221.11 g59176.t1 - 0.066 13 0.1 0.21 11.4 0 1.9 2 0 0 2 2 2 0 Tc5 transposase DNA-binding domain | Ref_seq=scaffold1283_contigs=15, transcript_loc=scaffold1283_contigs=15:76590-77475 Augustus predicted protein sequence Tobacco scaffold1283_contigs=15~76590-77475 PEARLI-4 PF05278.7 g59445.t1 - 0.098 12 0.1 0.14 11.5 0 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:157130-157708 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~157130-157708 DBD_Tnp_Mut PF03108.10 g60227.t1 - 0.021 14.3 0 0.032 13.7 0 1.3 1 0 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:247121-249727 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~247121-249727 ACR_tran PF00873.14 g78906.t1 - 0.075 10.4 0.1 0.081 10.3 0 1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:13553-13798 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~13553-13798 DUF4267 PF14087.1 g91282.t1 - 0.084 12.4 0.5 0.48 10 0.1 2 1 1 1 2 2 2 0 Domain of unknown function (DUF4267) | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:249377-249778 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~249377-249778 EF-hand_9 PF14658.1 g96238.t1 - 0.079 12.8 0.1 12 5.8 0.1 2.9 1 1 1 2 2 2 0 EF-hand domain | Ref_seq=scaffold2097_contigs=12, transcript_loc=scaffold2097_contigs=12:208910-209561 Augustus predicted protein sequence Tobacco scaffold2097_contigs=12~208910-209561 Vir_act_alpha_C PF10400.4 g44871.t1 - 0.015 15.6 0 0.018 15.4 0 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1041_contigs=2, transcript_loc=scaffold1041_contigs=2:79558-79821 Augustus predicted protein sequence Tobacco scaffold1041_contigs=2~79558-79821 DUF3519 PF12033.3 g12163.t1 - 0.079 13.1 1.2 1.7 8.8 0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3519) | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:169631-170011 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~169631-170011 DUF4423 PF14394.1 g15721.t1 - 0.023 14.2 0.1 0.049 13.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:174187-174813 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~174187-174813 HPD PF05044.7 g127025.t1 - 0.061 12.9 0 0.069 12.8 0 1.1 1 0 0 1 1 1 0 Homeo-prospero domain | Ref_seq=scaffold2811_contigs=1, transcript_loc=scaffold2811_contigs=1:73749-74164 Augustus predicted protein sequence Tobacco scaffold2811_contigs=1~73749-74164 Matrilin_ccoil PF10393.4 g130053.t1 - 0.03 13.6 0 0.055 12.8 0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold3370_contigs=1, transcript_loc=scaffold3370_contigs=1:2045-2985 Augustus predicted protein sequence Tobacco scaffold3370_contigs=1~2045-2985 AAA_assoc_C PF09821.4 g52007.t1 - 0.088 13 1.2 0.18 12.1 0.1 2 2 0 0 2 2 2 0 C-terminal AAA-associated domain | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:152247-153945 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~152247-153945 FNIP_M PF14637.1 g67812.t1 - 0.0029 17.2 0.1 1.6 8.2 0 2.1 1 1 1 2 2 2 2 Folliculin-interacting protein middle domain | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:375383-376425 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~375383-376425 DUF3581 PF12119.3 g32650.t1 - 0.067 12.4 0 0.077 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3581) | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:593064-593384 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~593064-593384 DUF1297 PF06973.7 g87793.t1 - 0.11 11.7 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1297) | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:397747-398010 Augustus predicted protein sequence Tobacco scaffold1896_contigs=29~397747-398010 DUF1324 PF07038.6 g23962.t1 - 0.00096 19.1 0.2 1.2 9.1 0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1324) | Ref_seq=scaffold656_contigs=9, transcript_loc=scaffold656_contigs=9:3497-4200 Augustus predicted protein sequence Tobacco scaffold656_contigs=9~3497-4200 Mod_r PF07200.8 g127910.t1 - 0.02 14.8 0.3 0.021 14.7 0.2 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein | Ref_seq=scaffold2841_contigs=1, transcript_loc=scaffold2841_contigs=1:47026-47412 Augustus predicted protein sequence Tobacco scaffold2841_contigs=1~47026-47412 DUF3571 PF12095.3 g128059.t1 - 0.11 12.7 0.7 0.22 11.8 0.1 1.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3571) | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:6855-7560 Augustus predicted protein sequence Tobacco scaffold2848_contigs=1~6855-7560 DUF3761 PF12587.3 g87037.t1 - 0.046 13.8 0 0.11 12.5 0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3761) | Ref_seq=scaffold1865_contigs=13, transcript_loc=scaffold1865_contigs=13:15963-20341 Augustus predicted protein sequence Tobacco scaffold1865_contigs=13~15963-20341 zf-C4H2 PF10146.4 g88961.t1 - 2.4 8 7.4 5.9 6.8 0.6 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:313182-313817 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~313182-313817 zf-CCHC_5 PF14787.1 g95713.t1 - 0.051 13 1.3 0.086 12.3 0.9 1.4 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:161129-161490 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~161129-161490 UBN2 PF14223.1 g100640.t1 - 0.036 13.8 0.1 0.09 12.5 0 1.6 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:161589-162044 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~161589-162044 RRS1 PF04939.7 g115826.t1 - 0.11 12 0.5 0.16 11.4 0.4 1.3 1 0 0 1 1 1 0 Ribosome biogenesis regulatory protein (RRS1) | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:26328-27143 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~26328-27143 Nucleoplasmin PF03066.10 g105246.t1 - 0.00076 19 1.3 0.00076 19 0.9 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:60090-60916 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~60090-60916 RVT_3 PF13456.1 g117413.t1 - 0.035 13.8 0 0.056 13.2 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2685_contigs=11, transcript_loc=scaffold2685_contigs=11:118185-118737 Augustus predicted protein sequence Tobacco scaffold2685_contigs=11~118185-118737 MUG2_C PF08593.5 g42892.t1 - 0.078 13.2 0.5 0.85 9.9 0.1 2 1 1 1 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:818835-819065 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~818835-819065 DUF249 PF03158.8 g63880.t1 - 0.043 13.3 0.2 0.054 13 0.2 1.1 1 0 0 1 1 1 0 Multigene family 530 protein | Ref_seq=scaffold1383_contigs=8, transcript_loc=scaffold1383_contigs=8:142858-143217 Augustus predicted protein sequence Tobacco scaffold1383_contigs=8~142858-143217 Yeast_MT PF11403.3 g95252.t1 - 0.014 15.5 0.2 0.025 14.7 0.2 1.4 1 0 0 1 1 1 0 Yeast metallothionein | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:462176-463003 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~462176-463003 EXS PF03124.9 g86209.t1 - 0.00031 19.8 1 0.00036 19.6 0.7 1.3 1 0 0 1 1 1 1 EXS family | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:228257-229868 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~228257-229868 DUF3585 PF12130.3 g42262.t1 - 0.0021 17.9 0.9 0.0026 17.6 0.6 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3585) | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:294527-294999 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~294527-294999 CRT10 PF08728.5 g26083.t1 - 0.1 10.6 0 0.12 10.3 0 1.1 1 0 0 1 1 1 0 CRT10 | Ref_seq=scaffold708_contigs=18, transcript_loc=scaffold708_contigs=18:264770-265535 Augustus predicted protein sequence Tobacco scaffold708_contigs=18~264770-265535 MASE1 PF05231.9 g89382.t1 - 0.045 12.7 0.1 0.049 12.6 0.1 1 1 0 0 1 1 1 0 MASE1 | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:24626-25653 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~24626-25653 LpxD PF04613.9 g97089.t1 - 0.12 11.9 0 16 5.1 0 2.1 2 0 0 2 2 2 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:501557-502098 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~501557-502098 DUF2694 PF10904.3 g41891.t1 - 0.063 13.2 0.6 0.15 12 0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:176948-177439 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~176948-177439 ATHILA PF03078.10 g4363.t1 - 0.000000069 31.4 0 0.000000079 31.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:88084-88572 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~88084-88572 DUF1682 PF07946.9 g101976.t1 - 0.0009 18.1 3.2 0.00097 18 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1682) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:226435-226962 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~226435-226962 RAP-1 PF03085.10 g41148.t1 - 0.033 13.5 0.1 0.038 13.3 0.1 1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:766035-766382 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~766035-766382 DUF1690 PF07956.6 g90167.t1 - 0.082 12.8 6.3 0.1 12.5 4.4 1.1 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:238681-238959 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~238681-238959 PBP_sp32 PF07222.7 g30087.t1 - 0.17 10.9 2.7 0.25 10.5 1.9 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:401645-402429 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~401645-402429 PHD PF00628.24 g28643.t1 - 0.0044 16.6 2.9 1.1 9 0.4 2.3 1 1 1 2 2 2 2 PHD-finger | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:32942-33322 Augustus predicted protein sequence Tobacco scaffold750_contigs=7~32942-33322 Borrelia_REV PF03978.8 g67711.t1 - 0.05 13.3 0.6 0.059 13.1 0.4 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:85044-85352 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~85044-85352 zf-CCHC PF00098.18 g96869.t1 - 0.026 14.4 0.6 0.046 13.6 0.4 1.4 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2125_contigs=8, transcript_loc=scaffold2125_contigs=8:48961-49320 Augustus predicted protein sequence Tobacco scaffold2125_contigs=8~48961-49320 Vir_act_alpha_C PF10400.4 g117216.t1 - 0.14 12.5 0.1 0.15 12.4 0 1.1 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:155903-156124 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~155903-156124 EssA PF10661.4 g42084.t1 - 0.13 11.9 0.2 0.16 11.6 0.1 1.1 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA | Ref_seq=scaffold1002_contigs=4, transcript_loc=scaffold1002_contigs=4:58905-59282 Augustus predicted protein sequence Tobacco scaffold1002_contigs=4~58905-59282 zf-CCHC PF00098.18 g42953.t1 - 0.0012 18.6 3.2 0.0019 18 2.2 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:8521-8910 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~8521-8910 PT PF04886.7 g8515.t1 - 0.0007 18.8 4.6 0.32 10.3 0.3 2.1 2 0 0 2 2 2 2 PT repeat | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:82433-82871 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~82433-82871 FlxA PF14282.1 g47676.t1 - 0.03 14.2 1 0.048 13.6 0.4 1.6 2 0 0 2 2 2 0 FlxA-like protein | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:498075-498605 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~498075-498605 zf-CCHC PF00098.18 g120697.t1 - 0.003 17.4 0.6 0.0044 16.8 0.4 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:84240-84491 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~84240-84491 IncA PF04156.9 g28851.t1 - 0.025 14.1 0.4 0.036 13.6 0.3 1.2 1 0 0 1 1 1 0 IncA protein | Ref_seq=scaffold751_contigs=13, transcript_loc=scaffold751_contigs=13:441968-443410 Augustus predicted protein sequence Tobacco scaffold751_contigs=13~441968-443410 zf-CCHC PF00098.18 g4503.t1 - 0.000055 22.8 4.5 0.000082 22.3 0.7 2.5 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:344836-345111 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~344836-345111 RAG2 PF03089.9 g110358.t1 - 0.15 10.7 0 0.18 10.5 0 1.1 1 0 0 1 1 1 0 Recombination activating protein 2 | Ref_seq=scaffold2538_contigs=14, transcript_loc=scaffold2538_contigs=14:458035-458734 Augustus predicted protein sequence Tobacco scaffold2538_contigs=14~458035-458734 ImpE PF07024.8 g70682.t1 - 0.087 12.7 0 0.092 12.7 0 1.2 1 0 0 1 1 1 0 ImpE protein | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:828126-828383 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~828126-828383 YdjO PF14169.1 g68127.t1 - 1.3 8.5 4 0.31 10.5 0.5 1.7 2 0 0 2 2 2 0 Cold-inducible protein YdjO | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:102083-102607 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~102083-102607 PTS_EIIA_2 PF00359.17 g129976.t1 - 0.0067 16.1 0.1 0.014 15 0.1 1.6 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 | Ref_seq=scaffold3287_contigs=1, transcript_loc=scaffold3287_contigs=1:438-1602 Augustus predicted protein sequence Tobacco scaffold3287_contigs=1~438-1602 PPR_1 PF12854.2 g20861.t1 - 0.0000066 25.4 0 0.000012 24.7 0 1.4 1 0 0 1 1 1 1 PPR repeat | Ref_seq=scaffold584_contigs=2, transcript_loc=scaffold584_contigs=2:20143-20421 Augustus predicted protein sequence Tobacco scaffold584_contigs=2~20143-20421 HeLo PF14479.1 g89313.t1 - 0.022 14.4 3.2 0.028 14.1 2.2 1.1 1 0 0 1 1 1 0 Prion-inhibition and propagation | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:286128-287926 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~286128-287926 DUF3124 PF11322.3 g87448.t1 - 0.1 12.5 0 0.12 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3124) | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:132031-132357 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~132031-132357 Imm9 PF15561.1 g105677.t1 - 0.18 11.3 0.7 4 7 0 2.4 2 1 1 3 3 3 0 Immunity protein 9 | Ref_seq=scaffold2362_contigs=9, transcript_loc=scaffold2362_contigs=9:243-566 Augustus predicted protein sequence Tobacco scaffold2362_contigs=9~243-566 Atg14 PF10186.4 g8524.t1 - 0.17 10.7 1.8 0.3 9.9 1.2 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:94601-95751 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~94601-95751 Cyt-b5 PF00173.23 g42464.t1 - 0.076 12.8 0 0.1 12.4 0 1.2 1 0 0 1 1 1 0 Cytochrome b5-like Heme/Steroid binding domain | Ref_seq=scaffold1008_contigs=4, transcript_loc=scaffold1008_contigs=4:103211-104838 Augustus predicted protein sequence Tobacco scaffold1008_contigs=4~103211-104838 zf-CCHC PF00098.18 g14025.t1 - 0.34 10.9 2.1 0.57 10.2 0.4 2 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold461_contigs=4, transcript_loc=scaffold461_contigs=4:26297-26515 Augustus predicted protein sequence Tobacco scaffold461_contigs=4~26297-26515 Foamy_BEL PF03274.9 g23355.t1 - 0.048 12.8 0.1 0.053 12.7 0.1 1.1 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:175360-175644 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~175360-175644 DUF3733 PF12534.3 g25502.t1 - 0.0041 16.3 0.2 0.69 9.2 0 2.2 2 0 0 2 2 2 2 Leucine-rich repeat containing protein 8 | Ref_seq=scaffold698_contigs=2, transcript_loc=scaffold698_contigs=2:24511-24840 Augustus predicted protein sequence Tobacco scaffold698_contigs=2~24511-24840 Peptidase_C93 PF06035.6 g22852.t1 - 0.086 12.2 0.1 0.088 12.2 0 1 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP | Ref_seq=scaffold626_contigs=2, transcript_loc=scaffold626_contigs=2:26813-29106 Augustus predicted protein sequence Tobacco scaffold626_contigs=2~26813-29106 DUF2267 PF10025.4 g64250.t1 - 0.026 14.5 0 0.036 14.1 0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:276846-277277 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~276846-277277 ATHILA PF03078.10 g83544.t1 - 0.0038 15.8 0 0.0038 15.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1795_contigs=18, transcript_loc=scaffold1795_contigs=18:62111-62374 Augustus predicted protein sequence Tobacco scaffold1795_contigs=18~62111-62374 Trypan_PARP PF05887.6 g58924.t1 - 0.91 9.3 23.1 1.7 8.4 16 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:235097-235597 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~235097-235597 PTCRA PF15028.1 g44085.t1 - 0.0082 15.7 0 0.01 15.3 0 1.2 1 0 0 1 1 1 1 Pre-T-cell antigen receptor | Ref_seq=scaffold1033_contigs=1, transcript_loc=scaffold1033_contigs=1:54662-56285 Augustus predicted protein sequence Tobacco scaffold1033_contigs=1~54662-56285 RVT_3 PF13456.1 g50657.t1 - 0.000033 23.5 0 0.000094 22.1 0 1.7 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:186295-188946 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~186295-188946 7TM_GPCR_Srz PF10325.4 g74870.t1 - 0.059 12.4 0.7 0.06 12.4 0.5 1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srz | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:255817-256897 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~255817-256897 DUF3530 PF12048.3 g72854.t1 - 0.034 13.1 1.5 0.042 12.8 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:24701-25117 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~24701-25117 Phage_NinH PF06322.6 g49944.t1 - 0.039 13.5 0.6 2.4 7.8 0 2.3 1 1 1 2 2 2 0 Phage NinH protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:427107-427535 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~427107-427535 HC2 PF07382.6 g58959.t1 - 0.0046 16.8 2.8 0.0065 16.3 1.9 1.2 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:288418-288885 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~288418-288885 Ag332 PF04671.7 g31502.t1 - 0.048 13.4 0.5 0.1 12.3 0.3 1.5 1 0 0 1 1 1 0 Erythrocyte membrane-associated giant protein antigen 332 | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:234859-235276 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~234859-235276 VTC PF09359.5 g60822.t1 - 0.15 11 0.2 0.21 10.5 0.1 1.1 1 0 0 1 1 1 0 VTC domain | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:225097-225471 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~225097-225471 LHH PF14411.1 g75848.t1 - 0.066 13.4 0 0.078 13.1 0 1.1 1 0 0 1 1 1 0 A nuclease of the HNH/ENDO VII superfamily with conserved LHH | Ref_seq=scaffold1604_contigs=5, transcript_loc=scaffold1604_contigs=5:112751-112993 Augustus predicted protein sequence Tobacco scaffold1604_contigs=5~112751-112993 FH2 PF02181.18 g26604.t1 - 0.022 13.6 0.1 0.026 13.4 0 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:9623-9922 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~9623-9922 Osmo_CC PF08946.5 g104311.t1 - 0.036 14.1 0.2 2.8 8 0.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:466070-469493 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~466070-469493 Sema PF01403.14 g67764.t1 - 0.12 10.8 0.2 0.14 10.6 0.1 1 1 0 0 1 1 1 0 Sema domain | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:237222-237464 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~237222-237464 PPR PF01535.15 g100079.t1 - 0.1 12.6 0 0.18 11.8 0 1.4 1 0 0 1 1 1 0 PPR repeat | Ref_seq=scaffold2184_contigs=3, transcript_loc=scaffold2184_contigs=3:3671-4997 Augustus predicted protein sequence Tobacco scaffold2184_contigs=3~3671-4997 Cnd1_N PF12922.2 g72214.t1 - 0.048 13.2 1.3 0.071 12.7 0.9 1.2 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1, N-term | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:522921-523991 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~522921-523991 UBN2 PF14223.1 g125992.t1 - 0.002 17.9 0.1 0.0076 16 0.1 1.9 1 1 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:24562-25047 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~24562-25047 Birna_VP5 PF03042.9 g114535.t1 - 0.31 10.5 2.7 0.44 10 1.8 1.5 1 1 0 1 1 1 0 Birnavirus VP5 protein | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:355055-355532 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~355055-355532 TOMM6 PF15184.1 g104647.t1 - 0.13 11.6 0.2 0.21 10.9 0 1.4 2 0 0 2 2 2 0 Mitochondrial import receptor subunit TOM6 homolog | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:277915-278130 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~277915-278130 RVT_2 PF07727.9 g94273.t1 - 0.00005 22.4 0.1 0.000057 22.1 0.1 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:454821-455364 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~454821-455364 DENN PF02141.16 g21286.t1 - 0.045 13.4 0 0.079 12.6 0 1.4 1 0 0 1 1 1 0 DENN (AEX-3) domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:5930-7188 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~5930-7188 PDCD2_C PF04194.8 g122874.t1 - 0.034 13.7 0.1 0.053 13.1 0 1.3 1 1 0 1 1 1 0 Programmed cell death protein 2, C-terminal putative domain | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:11935-12204 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~11935-12204 ATP-synt_10 PF05176.9 g93829.t1 - 0.059 12.6 0 0.076 12.2 0 1 1 0 0 1 1 1 0 ATP10 protein | Ref_seq=scaffold2033_contigs=2, transcript_loc=scaffold2033_contigs=2:3924-4623 Augustus predicted protein sequence Tobacco scaffold2033_contigs=2~3924-4623 RVT_3 PF13456.1 g17854.t1 - 0.0062 16.2 0 0.017 14.8 0 1.6 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold538_contigs=15, transcript_loc=scaffold538_contigs=15:45970-46203 Augustus predicted protein sequence Tobacco scaffold538_contigs=15~45970-46203 Beta-APP PF03494.8 g97123.t1 - 0.1 12 0 0.14 11.6 0 1.2 1 0 0 1 1 1 0 Beta-amyloid peptide (beta-APP) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:18466-18708 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~18466-18708 Vps5 PF09325.5 g71819.t1 - 0.0035 16.6 1.5 0.0056 15.9 1.1 1.2 1 0 0 1 1 1 1 Vps5 C terminal like | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:163600-164268 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~163600-164268 DUF4365 PF14280.1 g108041.t1 - 0.021 14.5 0 0.023 14.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4365) | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:11850-12146 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~11850-12146 Herpes_BLRF2 PF05812.7 g110124.t1 - 0.019 14.7 1 0.031 14 0.7 1.4 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein | Ref_seq=scaffold2526_contigs=3, transcript_loc=scaffold2526_contigs=3:11696-12165 Augustus predicted protein sequence Tobacco scaffold2526_contigs=3~11696-12165 DUF1395 PF07160.7 g103203.t1 - 0.24 10.8 2.2 13 5.1 0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:131948-132706 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~131948-132706 MCR_D PF02505.9 g89218.t1 - 3.2 7.2 9 5.8 6.4 1.2 2.3 1 1 1 2 2 2 0 Methyl-coenzyme M reductase operon protein D | Ref_seq=scaffold1942_contigs=6, transcript_loc=scaffold1942_contigs=6:103857-105199 Augustus predicted protein sequence Tobacco scaffold1942_contigs=6~103857-105199 DBD_Tnp_Mut PF03108.10 g121395.t1 - 0.0025 17.3 0.2 0.0087 15.6 0 2.1 2 0 0 2 2 2 1 MuDR family transposase | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1087707-1088381 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1087707-1088381 DNAP_B_exo_N PF08452.5 g36451.t1 - 0.012 14.9 2.3 3 7.1 0.1 2.4 2 0 0 2 2 2 0 DNA polymerase family B exonuclease domain, N-terminal | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:107547-107855 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~107547-107855 Hydrolase_3 PF08282.7 g35578.t1 - 0.039 13.5 0.3 0.046 13.3 0.2 1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase | Ref_seq=scaffold875_contigs=10, transcript_loc=scaffold875_contigs=10:124773-125135 Augustus predicted protein sequence Tobacco scaffold875_contigs=10~124773-125135 RXT2_N PF08595.6 g64729.t1 - 0.021 14.6 1.1 0.024 14.4 0.8 1.1 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:18109-18610 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~18109-18610 DUF1777 PF08648.7 g71582.t1 - 9.9 5.8 19.8 12 5.6 13.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1777) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:66634-66870 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~66634-66870 UBN2 PF14223.1 g31850.t1 - 0.031 14 0.8 0.06 13.1 0.5 1.6 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold800_contigs=2, transcript_loc=scaffold800_contigs=2:69075-70513 Augustus predicted protein sequence Tobacco scaffold800_contigs=2~69075-70513 Prd1-P2 PF09214.6 g46442.t1 - 1.1 7.6 10.5 3 6.2 0.1 3.1 2 1 1 3 3 3 0 Bacteriophage Prd1, adsorption protein P2 | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:410726-412972 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~410726-412972 Strep_SA_rep PF06696.6 g11505.t1 - 0.18 11.6 3.5 0.56 10 2.4 1.7 1 1 0 1 1 1 0 Streptococcal surface antigen repeat | Ref_seq=scaffold408_contigs=6, transcript_loc=scaffold408_contigs=6:194767-195389 Augustus predicted protein sequence Tobacco scaffold408_contigs=6~194767-195389 TSC22 PF01166.13 g77150.t1 - 0.086 12.8 4.7 0.29 11.1 1.1 3 2 1 1 3 3 3 0 TSC-22/dip/bun family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:19597-20292 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~19597-20292 Delta_lysin PF05372.6 g130113.t1 - 0.022 14.1 0 0.035 13.4 0 1.2 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold3482_contigs=1, transcript_loc=scaffold3482_contigs=1:42-365 Augustus predicted protein sequence Tobacco scaffold3482_contigs=1~42-365 AHS2 PF02626.10 g119949.t1 - 0.14 11.4 0 0.16 11.2 0 1.1 1 0 0 1 1 1 0 Allophanate hydrolase subunit 2 | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:100000-102542 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~100000-102542 UBN2 PF14223.1 g102881.t1 - 0.0087 15.8 2.7 0.17 11.6 0.1 3.4 3 0 0 3 3 3 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2271_contigs=9, transcript_loc=scaffold2271_contigs=9:111315-112444 Augustus predicted protein sequence Tobacco scaffold2271_contigs=9~111315-112444 Peptidase_C48 PF02902.14 g82363.t1 - 0.000000016 34.4 0 0.000000016 34.4 0 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:327669-327875 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~327669-327875 DUF4106 PF13388.1 g13854.t1 - 0.1 11.5 0.4 0.1 11.5 0.3 1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:200850-201071 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~200850-201071 TnpB_IS66 PF05717.8 g32621.t1 - 0.0066 15.8 0 0.0077 15.6 0 1.2 1 0 0 1 1 1 1 IS66 Orf2 like protein | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:503293-503529 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~503293-503529 DUF3639 PF12341.3 g112292.t1 - 0.011 15.7 1.6 4 7.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) | Ref_seq=scaffold2609_contigs=44, transcript_loc=scaffold2609_contigs=44:28736-29189 Augustus predicted protein sequence Tobacco scaffold2609_contigs=44~28736-29189 RVP_2 PF08284.6 g112094.t1 - 0.000031 23.9 0.9 0.035 14 0.1 2.1 1 1 1 2 2 2 2 Retroviral aspartyl protease | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:145149-146309 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~145149-146309 DUF1609 PF07753.6 g21839.t1 - 0.16 11.2 0 13 4.9 0 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1609) | Ref_seq=scaffold601_contigs=9, transcript_loc=scaffold601_contigs=9:31201-32894 Augustus predicted protein sequence Tobacco scaffold601_contigs=9~31201-32894 OTCace PF00185.19 g124077.t1 - 0.039 13.8 1 1 9.1 0.2 2.1 1 1 1 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1284868-1285520 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1284868-1285520 RALF PF05498.6 g115630.t1 - 0.0003 21.5 0.2 0.00041 21.1 0.1 1.3 1 1 0 1 1 1 1 Rapid ALkalinization Factor (RALF) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:834352-834582 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~834352-834582 DUF4337 PF14235.1 g62207.t1 - 3.6 7.4 7.2 4.7 7 5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:190460-190834 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~190460-190834 GcrA PF07750.6 g12493.t1 - 0.053 13.7 0.2 0.29 11.3 0 2 2 0 0 2 2 2 0 GcrA cell cycle regulator | Ref_seq=scaffold427_contigs=11, transcript_loc=scaffold427_contigs=11:262232-262741 Augustus predicted protein sequence Tobacco scaffold427_contigs=11~262232-262741 RVP_2 PF08284.6 g51998.t1 - 0.000000011 35.1 0.1 0.000000017 34.4 0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:117134-118185 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~117134-118185 AChE_tetra PF08674.5 g15027.t1 - 0.086 12.3 2.2 5 6.7 0.2 2.5 2 0 0 2 2 2 0 Acetylcholinesterase tetramerisation domain | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:74941-76025 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~74941-76025 PsbP PF01789.11 g1610.t1 - 0.11 11.9 0.1 0.14 11.6 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:6753-7187 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~6753-7187 EST1_DNA_bind PF10373.4 g48832.t1 - 0.061 12.5 0 0.062 12.5 0 1.1 1 0 0 1 1 1 0 Est1 DNA/RNA binding domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:460744-461592 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~460744-461592 Peroxin-13_N PF04088.8 g50873.t1 - 1.3 8.9 5.5 0.2 11.5 0.5 1.8 1 1 1 2 2 2 0 Peroxin 13, N-terminal region | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:377109-377471 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~377109-377471 MIB_HERC2 PF06701.8 g35314.t1 - 0.49 10.4 3.8 8.4 6.4 0.1 2.3 2 0 0 2 2 2 0 Mib_herc2 | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:24552-25156 Augustus predicted protein sequence Tobacco scaffold866_contigs=9~24552-25156 Ribosomal_S20p PF01649.13 g81761.t1 - 0.026 14.8 0.4 0.05 13.9 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein S20 | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:40960-41702 Augustus predicted protein sequence Tobacco scaffold1736_contigs=8~40960-41702 PAH PF02671.16 g127166.t1 - 0.12 12 0 0.14 11.8 0 1.2 1 0 0 1 1 1 0 Paired amphipathic helix repeat | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:30603-30845 Augustus predicted protein sequence Tobacco scaffold2815_contigs=1~30603-30845 DUF4192 PF13830.1 g125042.t1 - 0.027 14.1 0.5 0.044 13.4 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) | Ref_seq=scaffold2767_contigs=1, transcript_loc=scaffold2767_contigs=1:7938-9105 Augustus predicted protein sequence Tobacco scaffold2767_contigs=1~7938-9105 DAZAP2 PF11029.3 g53769.t1 - 0.32 11.4 8 4 7.9 0.6 2.4 1 1 1 2 2 2 0 DAZ associated protein 2 (DAZAP2) | Ref_seq=scaffold1190_contigs=29, transcript_loc=scaffold1190_contigs=29:104611-105813 Augustus predicted protein sequence Tobacco scaffold1190_contigs=29~104611-105813 DUF3908 PF13048.1 g126950.t1 - 0.093 12.6 0.4 0.098 12.6 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3908) | Ref_seq=scaffold2809_contigs=1, transcript_loc=scaffold2809_contigs=1:67523-67768 Augustus predicted protein sequence Tobacco scaffold2809_contigs=1~67523-67768 CAP_N PF01213.14 g121331.t1 - 0.047 12.9 0.4 0.047 12.9 0.3 1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:798121-798393 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~798121-798393 DUF466 PF04328.8 g129846.t1 - 0.11 12.2 0 0.24 11.2 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF466) | Ref_seq=scaffold3114_contigs=1, transcript_loc=scaffold3114_contigs=1:1-408 Augustus predicted protein sequence Tobacco scaffold3114_contigs=1~1-408 DUF751 PF05421.6 g103302.t1 - 0.18 12.1 2.7 0.24 11.7 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF751) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:357177-357650 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~357177-357650 DDHD PF02862.12 g20769.t1 - 0.0041 16.9 9.6 0.0043 16.8 6.7 1 1 0 0 1 1 1 1 DDHD domain | Ref_seq=scaffold583_contigs=2, transcript_loc=scaffold583_contigs=2:215226-217169 Augustus predicted protein sequence Tobacco scaffold583_contigs=2~215226-217169 Dimer_Tnp_hAT PF05699.9 g67818.t1 - 0.025 14.1 0.2 0.081 12.5 0.1 1.8 2 0 0 2 2 2 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:388787-389023 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~388787-389023 Tna_leader PF08053.6 g16336.t1 - 0.61 9.5 12.2 2.9 7.3 0 4.8 5 0 0 5 5 5 0 Tryptophanese operon leader peptide | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:82580-84231 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~82580-84231 SOCS PF12610.3 g44024.t1 - 0.056 13.7 0.1 0.17 12.2 0 1.8 2 0 0 2 2 2 0 Suppressor of cytokine signalling | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:220579-220914 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~220579-220914 GUN4 PF05419.7 g62437.t1 - 0.013 15.3 0.1 0.014 15.2 0 1.1 1 0 0 1 1 1 0 GUN4-like | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:217943-218206 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~217943-218206 ATHILA PF03078.10 g81511.t1 - 0.00000022 29.8 0 0.00000025 29.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:126577-126867 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~126577-126867 PP2C PF00481.16 g50636.t1 - 0.0036 16.7 0.1 0.0055 16.1 0.1 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:119144-119909 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~119144-119909 OxoDH_E1alpha_N PF12573.3 g104705.t1 - 0.057 12.9 0 12 5.5 0 2.2 2 0 0 2 2 2 0 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal | Ref_seq=scaffold2343_contigs=14, transcript_loc=scaffold2343_contigs=14:41385-41780 Augustus predicted protein sequence Tobacco scaffold2343_contigs=14~41385-41780 zf-CCHC PF00098.18 g8970.t1 - 0.00051 19.8 0.9 0.00093 19 0.6 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold349_contigs=3, transcript_loc=scaffold349_contigs=3:17695-19109 Augustus predicted protein sequence Tobacco scaffold349_contigs=3~17695-19109 HALZ PF02183.13 g28566.t1 - 0.097 12.3 8.3 0.89 9.3 1.9 2.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:208041-208721 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~208041-208721 UPF0565 PF10561.4 g41846.t1 - 0.017 14 0.2 0.021 13.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0565 | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:87602-90163 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~87602-90163 Tautomerase PF01361.16 g13014.t1 - 0.1 12.2 0 0.18 11.4 0 1.3 1 0 0 1 1 1 0 Tautomerase enzyme | Ref_seq=scaffold441_contigs=5, transcript_loc=scaffold441_contigs=5:152830-154888 Augustus predicted protein sequence Tobacco scaffold441_contigs=5~152830-154888 YkuD PF03734.9 g85685.t1 - 0.13 12.4 0 0.15 12.3 0 1.2 1 0 0 1 1 1 0 L,D-transpeptidase catalytic domain | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:351475-352399 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~351475-352399 DUF3935 PF13071.1 g122372.t1 - 0.11 12.9 0 0.21 11.9 0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3935) | Ref_seq=scaffold2745_contigs=7, transcript_loc=scaffold2745_contigs=7:15416-16096 Augustus predicted protein sequence Tobacco scaffold2745_contigs=7~15416-16096 TBX PF12598.3 g118557.t1 - 0.12 12.7 0.5 0.12 12.7 0.3 1.8 1 1 1 2 2 2 0 T-box transcription factor | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:179125-180574 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~179125-180574 Tox-HNH-HHH PF15637.1 g22650.t1 - 0.051 13.3 0.1 0.068 12.9 0 1.2 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:66874-67080 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~66874-67080 NESP55 PF06390.7 g16731.t1 - 1.5 8.1 5 6.8 5.9 3.3 2 2 0 0 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:237370-238149 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~237370-238149 DUF2514 PF10721.4 g128078.t1 - 0.0012 18.5 2.8 0.0017 18 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2514) | Ref_seq=scaffold2848_contigs=1, transcript_loc=scaffold2848_contigs=1:52148-53052 Augustus predicted protein sequence Tobacco scaffold2848_contigs=1~52148-53052 DUF3759 PF12585.3 g18490.t1 - 0.021 14.7 0 0.78 9.6 0 2 2 0 0 2 2 2 0 Protein of unknown function (DUF3759) | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:112912-113229 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~112912-113229 Rod_cone_degen PF15201.1 g83400.t1 - 0.014 15.2 0.1 0.04 13.7 0 1.9 1 0 0 1 1 1 0 Progressive rod-cone degeneration | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:45357-46775 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~45357-46775 Ribosomal_L32e PF01655.13 g36853.t1 - 0.15 12 1.9 0.49 10.4 0.2 2.5 2 0 0 2 2 2 0 Ribosomal protein L32 | Ref_seq=scaffold902_contigs=1, transcript_loc=scaffold902_contigs=1:22105-23625 Augustus predicted protein sequence Tobacco scaffold902_contigs=1~22105-23625 Tenui_NCP PF04876.7 g97767.t1 - 0.0089 15.5 0.1 3.1 7.3 0 2.1 1 1 1 2 2 2 2 Tenuivirus major non-capsid protein | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:121098-122876 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~121098-122876 Dynamin_M PF01031.15 g34831.t1 - 0.053 12.2 0 0.063 12 0 1.1 1 0 0 1 1 1 0 Dynamin central region | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:30279-30647 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~30279-30647 IFP_35_N PF07334.8 g16519.t1 - 0.0096 15.8 1.9 0.02 14.8 1.3 1.6 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold519_contigs=1, transcript_loc=scaffold519_contigs=1:8656-9141 Augustus predicted protein sequence Tobacco scaffold519_contigs=1~8656-9141 Tmemb_40 PF10160.4 g128765.t1 - 0.038 13.2 0.5 0.041 13.1 0.3 1 1 0 0 1 1 1 0 Predicted membrane protein | Ref_seq=scaffold2887_contigs=1, transcript_loc=scaffold2887_contigs=1:31133-31354 Augustus predicted protein sequence Tobacco scaffold2887_contigs=1~31133-31354 DUF4219 PF13961.1 g83091.t1 - 0.037 13.4 0.1 0.098 12.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:82207-84549 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~82207-84549 HALZ PF02183.13 g17042.t1 - 0.0003 20.4 7 0.00046 19.8 2 2.5 1 1 1 2 2 2 1 Homeobox associated leucine zipper | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:352541-353107 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~352541-353107 FXa_inhibition PF14670.1 g116742.t1 - 0.73 10 4.5 10 6.3 1.1 2.6 2 1 0 2 2 2 0 Coagulation Factor Xa inhibitory site | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:55723-56013 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~55723-56013 DUF4655 PF15548.1 g59436.t1 - 0.62 8.9 4.7 0.65 8.8 2.7 1.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4655) | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:130489-131881 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~130489-131881 IFP_35_N PF07334.8 g9818.t1 - 0.034 14.1 0.9 0.088 12.7 0.6 1.8 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:97278-98222 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~97278-98222 CofC PF01983.11 g113456.t1 - 0.02 13.8 0.1 0.037 12.9 0.1 1.4 1 0 0 1 1 1 0 Guanylyl transferase CofC like | Ref_seq=scaffold2632_contigs=8, transcript_loc=scaffold2632_contigs=8:64950-66577 Augustus predicted protein sequence Tobacco scaffold2632_contigs=8~64950-66577 PAT1 PF09770.4 g12688.t1 - 8 4.5 19 8.9 4.4 13.2 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:270519-271108 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~270519-271108 Retrotrans_gag PF03732.12 g38612.t1 - 0.00046 20.2 0 0.00054 19.9 0 1.1 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:202092-202463 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~202092-202463 PsbP PF01789.11 g115660.t1 - 0.089 12.2 0.1 0.1 12 0.1 1.3 1 1 0 1 1 1 0 PsbP | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:917476-917937 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~917476-917937 TnpV PF14198.1 g59977.t1 - 0.18 11.7 0.7 0.31 10.9 0.5 1.3 1 0 0 1 1 1 0 Transposon-encoded protein TnpV | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:339125-340098 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~339125-340098 Spore_GerAC PF05504.6 g92175.t1 - 0.05 13.3 0.3 0.057 13.2 0.2 1.3 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal | Ref_seq=scaffold1984_contigs=7, transcript_loc=scaffold1984_contigs=7:160332-161758 Augustus predicted protein sequence Tobacco scaffold1984_contigs=7~160332-161758 MCC-bdg_PDZ PF10506.4 g10130.t1 - 0.093 12.5 0.4 0.12 12.1 0.2 1.1 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome | Ref_seq=scaffold384_contigs=11, transcript_loc=scaffold384_contigs=11:72936-73151 Augustus predicted protein sequence Tobacco scaffold384_contigs=11~72936-73151 Cut8_N PF14482.1 g92556.t1 - 0.0016 18.4 1.9 0.33 10.9 0.2 2.5 2 0 0 2 2 2 2 Cut8 proteasome-binding domain | Ref_seq=scaffold1993_contigs=21, transcript_loc=scaffold1993_contigs=21:72691-75913 Augustus predicted protein sequence Tobacco scaffold1993_contigs=21~72691-75913 Rootletin PF15035.1 g70001.t1 - 0.058 13.3 0.6 0.07 13.1 0 1.4 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:62805-67396 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~62805-67396 DUF3363 PF11843.3 g15034.t1 - 0.0014 17.3 0.7 0.0015 17.2 0.5 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) | Ref_seq=scaffold486_contigs=3, transcript_loc=scaffold486_contigs=3:85240-85572 Augustus predicted protein sequence Tobacco scaffold486_contigs=3~85240-85572 Baculo_PEP_C PF04513.7 g67159.t1 - 0.1 12.4 0.6 0.28 10.9 0.4 1.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:631897-632938 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~631897-632938 DUF1155 PF06633.6 g120192.t1 - 0.019 14.2 0.8 3.5 6.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1155) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:226597-227226 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~226597-227226 Syntaxin PF00804.20 g58205.t1 - 0.044 13.9 1.9 0.082 13 1.3 1.4 1 0 0 1 1 1 0 Syntaxin | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:256869-257961 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~256869-257961 Pox_Ag35 PF03286.9 g955.t1 - 0.0094 15.4 2.3 0.011 15.2 1.6 1 1 0 0 1 1 1 1 Pox virus Ag35 surface protein | Ref_seq=scaffold87_contigs=1, transcript_loc=scaffold87_contigs=1:3296-3592 Augustus predicted protein sequence Tobacco scaffold87_contigs=1~3296-3592 Plasmid_parti PF01672.11 g2080.t1 - 0.0027 18.1 0.4 1.1 9.7 0.1 2.1 1 1 1 2 2 2 2 Putative plasmid partition protein | Ref_seq=scaffold200_contigs=3, transcript_loc=scaffold200_contigs=3:129826-130146 Augustus predicted protein sequence Tobacco scaffold200_contigs=3~129826-130146 Lipase3_N PF03893.11 g41631.t1 - 0.058 13.2 0 0.087 12.6 0 1.2 1 0 0 1 1 1 0 Lipase 3 N-terminal region | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:67139-68070 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~67139-68070 DUF1560 PF07597.6 g107522.t1 - 0.17 11.8 1.4 0.42 10.6 0.1 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1560) | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:242680-243310 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~242680-243310 DUF3970 PF13113.1 g53164.t1 - 0.071 12.8 0 0.13 11.9 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:82394-82708 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~82394-82708 DBD_Tnp_Mut PF03108.10 g8551.t1 - 0.00027 20.4 0.1 0.00033 20.1 0.1 1.1 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:184349-184675 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~184349-184675 UBN2 PF14223.1 g70632.t1 - 0.00069 19.3 0.1 0.00075 19.2 0.1 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:704200-704445 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~704200-704445 Astacin PF01400.19 g59689.t1 - 0.056 12.8 0 0.072 12.4 0 1.1 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:111796-112215 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~111796-112215 CAP_N PF01213.14 g116394.t1 - 0.018 14.3 1.4 0.02 14.1 1 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2669_contigs=10, transcript_loc=scaffold2669_contigs=10:265271-265774 Augustus predicted protein sequence Tobacco scaffold2669_contigs=10~265271-265774 Flagellin_C PF00700.16 g13139.t1 - 0.15 12.2 0.1 0.21 11.7 0 1.2 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:254978-256565 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~254978-256565 Kinocilin PF15033.1 g54862.t1 - 0.019 14.5 0.1 2.2 7.8 0 2.1 1 1 1 2 2 2 0 Kinocilin protein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:34957-36066 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~34957-36066 Receptor_2B4 PF11465.3 g60846.t1 - 0.0032 17.3 0 0.0057 16.5 0 1.3 1 0 0 1 1 1 1 Natural killer cell receptor 2B4 | Ref_seq=scaffold1320_contigs=26, transcript_loc=scaffold1320_contigs=26:297994-299015 Augustus predicted protein sequence Tobacco scaffold1320_contigs=26~297994-299015 Choline_kin_N PF04428.9 g123240.t1 - 0.025 14 0.1 0.12 11.8 0 2 2 0 0 2 2 2 0 Choline kinase N terminus | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:155949-156326 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~155949-156326 CagX PF03524.10 g90274.t1 - 0.46 9.7 2 0.59 9.3 1.2 1.3 1 1 0 1 1 1 0 Conjugal transfer protein | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:488630-489533 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~488630-489533 DUF4618 PF15397.1 g105582.t1 - 0.014 14.7 0.4 0.018 14.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) | Ref_seq=scaffold2357_contigs=7, transcript_loc=scaffold2357_contigs=7:78803-81256 Augustus predicted protein sequence Tobacco scaffold2357_contigs=7~78803-81256 DUF2764 PF10962.3 g116225.t1 - 0.0099 15.1 0 0.011 14.9 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF2764) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:221771-222055 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~221771-222055 ApoO PF09769.4 g65666.t1 - 0.11 12.2 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Apolipoprotein O | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:53263-54204 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~53263-54204 DUF1985 PF09331.6 g68191.t1 - 0.0019 18 0 0.0031 17.3 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:325935-329873 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~325935-329873 Cast PF10174.4 g104795.t1 - 0.047 11.7 0.6 0.061 11.3 0.4 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone | Ref_seq=scaffold2344_contigs=6, transcript_loc=scaffold2344_contigs=6:9404-9700 Augustus predicted protein sequence Tobacco scaffold2344_contigs=6~9404-9700 Bindin PF02084.10 g34444.t1 - 0.027 14.5 0.9 0.032 14.2 0.6 1 1 0 0 1 1 1 0 Bindin | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:40092-40482 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~40092-40482 DUF2694 PF10904.3 g41683.t1 - 0.051 13.5 0.1 0.1 12.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold992_contigs=3, transcript_loc=scaffold992_contigs=3:200217-201056 Augustus predicted protein sequence Tobacco scaffold992_contigs=3~200217-201056 TFIIF_alpha PF05793.7 g96990.t1 - 0.08 11.3 1.7 4.9 5.4 0.1 2.1 1 1 0 2 2 2 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:250133-252009 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~250133-252009 POC1 PF10450.4 g99900.t1 - 0.1 11.3 0.1 0.56 8.9 0 1.9 2 0 0 2 2 2 0 POC1 chaperone | Ref_seq=scaffold2182_contigs=7, transcript_loc=scaffold2182_contigs=7:57749-58321 Augustus predicted protein sequence Tobacco scaffold2182_contigs=7~57749-58321 RINGv PF12906.2 g32934.t1 - 0.00036 20.5 1.8 0.00092 19.2 1.3 1.7 1 0 0 1 1 1 1 RING-variant domain | Ref_seq=scaffold824_contigs=8, transcript_loc=scaffold824_contigs=8:99206-102747 Augustus predicted protein sequence Tobacco scaffold824_contigs=8~99206-102747 DUF2823 PF11034.3 g105999.t1 - 0.0073 16.4 0.3 0.01 15.9 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2823) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1393763-1394271 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~1393763-1394271 TTKRSYEDQ PF10212.4 g108698.t1 - 0.052 12.4 0 0.055 12.3 0 1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein | Ref_seq=scaffold2448_contigs=3, transcript_loc=scaffold2448_contigs=3:78264-78518 Augustus predicted protein sequence Tobacco scaffold2448_contigs=3~78264-78518 Cortex-I_coil PF09304.5 g7181.t1 - 0.021 14.8 7.3 0.021 14.8 5.1 1.7 2 0 0 2 2 2 0 Cortexillin I, coiled coil | Ref_seq=scaffold309_contigs=4, transcript_loc=scaffold309_contigs=4:40295-42800 Augustus predicted protein sequence Tobacco scaffold309_contigs=4~40295-42800 Peptidase_C70 PF12385.3 g18518.t1 - 0.052 13.2 0 0.058 13 0 1 1 0 0 1 1 1 0 Papain-like cysteine protease AvrRpt2 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:143502-143931 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~143502-143931 DUF3407 PF11887.3 g110959.t1 - 0.1 11.8 0 0.12 11.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) | Ref_seq=scaffold2571_contigs=16, transcript_loc=scaffold2571_contigs=16:40933-42238 Augustus predicted protein sequence Tobacco scaffold2571_contigs=16~40933-42238 DUF2188 PF09954.4 g61069.t1 - 0.0055 16.5 0.3 1.5 8.8 0 2.5 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2188) | Ref_seq=scaffold1327_contigs=1, transcript_loc=scaffold1327_contigs=1:14581-17355 Augustus predicted protein sequence Tobacco scaffold1327_contigs=1~14581-17355 RgpF PF05045.7 g38882.t1 - 0.047 12.2 0.1 0.051 12.1 0 1.1 1 0 0 1 1 1 0 Rhamnan synthesis protein F | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:165698-166099 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~165698-166099 zf-CCHC PF00098.18 g23611.t1 - 0.00026 20.7 1.3 0.00038 20.2 0.9 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:185038-185334 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~185038-185334 Diphtheria_C PF02763.9 g129924.t1 - 0.038 13.4 0.3 6 6.2 0 2.1 2 0 0 2 2 2 0 Diphtheria toxin, C domain | Ref_seq=scaffold3207_contigs=1, transcript_loc=scaffold3207_contigs=1:1309-2119 Augustus predicted protein sequence Tobacco scaffold3207_contigs=1~1309-2119 FAM92 PF06730.6 g71650.t1 - 0.044 13.1 0.2 0.05 12.9 0.1 1.1 1 0 0 1 1 1 0 FAM92 protein | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:218944-219264 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~218944-219264 Radial_spoke_3 PF06098.6 g90941.t1 - 0.015 14.3 7.3 0.017 14.1 5 1 1 0 0 1 1 1 0 Radial spoke protein 3 | Ref_seq=scaffold1964_contigs=6, transcript_loc=scaffold1964_contigs=6:220144-220526 Augustus predicted protein sequence Tobacco scaffold1964_contigs=6~220144-220526 Tropomyosin PF00261.15 g12231.t1 - 0.026 13.6 1 0.43 9.6 1.1 2 2 0 0 2 2 2 0 Tropomyosin | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:369180-369795 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~369180-369795 HpaP PF09483.5 g75312.t1 - 0.075 12.9 0.8 0.078 12.9 0.6 1.1 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:132201-132539 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~132201-132539 SLD3 PF08639.5 g12224.t1 - 0.037 12.6 0 0.045 12.3 0 1.1 1 0 0 1 1 1 0 DNA replication regulator SLD3 | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:359011-359337 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~359011-359337 RAP1 PF07218.6 g21987.t1 - 0.043 11.9 0.2 0.037 12.1 0.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) | Ref_seq=scaffold607_contigs=8, transcript_loc=scaffold607_contigs=8:44738-45905 Augustus predicted protein sequence Tobacco scaffold607_contigs=8~44738-45905 Mis12 PF05859.7 g68888.t1 - 0.11 12.2 0 0.14 11.9 0 1.1 1 0 0 1 1 1 0 Mis12 protein | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:41912-42235 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~41912-42235 Collagen PF01391.13 g29476.t1 - 0.88 9.1 5.8 0.16 11.5 1.5 1.6 2 1 0 2 2 2 0 Collagen triple helix repeat (20 copies) | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:17998-18693 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~17998-18693 Phage_GP20 PF06810.6 g1880.t1 - 0.0045 16.4 0.5 0.012 15 0.4 1.7 1 0 0 1 1 1 1 Phage minor structural protein GP20 | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:139974-140633 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~139974-140633 DUF1985 PF09331.6 g112709.t1 - 0.031 14 0 0.058 13.1 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:194946-197171 Augustus predicted protein sequence Tobacco scaffold2615_contigs=8~194946-197171 Phage_integrase PF00589.17 g129853.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3123_contigs=1, transcript_loc=scaffold3123_contigs=1:1363-1707 Augustus predicted protein sequence Tobacco scaffold3123_contigs=1~1363-1707 zf-CCHC PF00098.18 g2914.t1 - 0.024 14.5 0.2 0.037 13.9 0.2 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:39334-40014 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~39334-40014 UPF0220 PF05255.6 g7257.t1 - 0.07 12.3 0 0.083 12.1 0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) | Ref_seq=scaffold311_contigs=5, transcript_loc=scaffold311_contigs=5:8448-8982 Augustus predicted protein sequence Tobacco scaffold311_contigs=5~8448-8982 zf-BED PF02892.10 g121534.t1 - 0.0039 16.9 2.4 0.01 15.5 1.7 1.7 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1605875-1606975 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1605875-1606975 CppA_C PF14507.1 g66746.t1 - 0.019 15.1 0.1 0.033 14.3 0.1 1.4 1 1 0 1 1 1 0 CppA C-terminal | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:572343-572654 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~572343-572654 RVT_3 PF13456.1 g101710.t1 - 0.0013 18.4 0 0.002 17.8 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2217_contigs=9, transcript_loc=scaffold2217_contigs=9:10732-11309 Augustus predicted protein sequence Tobacco scaffold2217_contigs=9~10732-11309 Gal_Lectin PF02140.13 g47688.t1 - 0.25 11.7 1.7 0.38 11 0.6 1.8 2 1 0 2 2 2 0 Galactose binding lectin domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:548492-548863 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~548492-548863 Leucyl-specific PF14795.1 g118818.t1 - 0.0031 17.3 0.7 14 5.6 0 3.3 3 0 0 3 3 3 3 Leucine-tRNA synthetase-specific domain | Ref_seq=scaffold2707_contigs=8, transcript_loc=scaffold2707_contigs=8:47853-53795 Augustus predicted protein sequence Tobacco scaffold2707_contigs=8~47853-53795 DUF1985 PF09331.6 g80771.t1 - 0.009 15.8 0 0.0095 15.7 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:265283-266024 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~265283-266024 AAA_9 PF12781.2 g77684.t1 - 0.0017 17.2 0.2 0.0017 17.2 0.1 1 1 0 0 1 1 1 1 ATP-binding dynein motor region D5 | Ref_seq=scaffold1637_contigs=18, transcript_loc=scaffold1637_contigs=18:68283-68567 Augustus predicted protein sequence Tobacco scaffold1637_contigs=18~68283-68567 DUF2621 PF11084.3 g37906.t1 - 0.17 11.5 0.2 0.44 10.2 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2621) | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:231374-232215 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~231374-232215 Ribosomal_L15e PF00827.12 g100776.t1 - 0.0026 17.2 1.2 0.0046 16.4 0.8 1.3 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:156189-157325 Augustus predicted protein sequence Tobacco scaffold2204_contigs=7~156189-157325 Sigma70_ner PF04546.8 g70239.t1 - 0.07 12.7 1.6 0.097 12.2 1.1 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:119708-120423 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~119708-120423 UTP15_C PF09384.5 g122517.t1 - 0.0054 16.4 0.1 0.0089 15.7 0.1 1.3 1 0 0 1 1 1 1 UTP15 C terminal | Ref_seq=scaffold2746_contigs=8, transcript_loc=scaffold2746_contigs=8:159403-160087 Augustus predicted protein sequence Tobacco scaffold2746_contigs=8~159403-160087 YaaC PF14175.1 g51763.t1 - 0.01 14.8 0.1 0.011 14.7 0.1 1 1 0 0 1 1 1 0 YaaC-like Protein | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:200904-201269 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~200904-201269 RVT_3 PF13456.1 g89537.t1 - 0.0000012 28.2 0 0.0000019 27.5 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1949_contigs=5, transcript_loc=scaffold1949_contigs=5:38266-38646 Augustus predicted protein sequence Tobacco scaffold1949_contigs=5~38266-38646 DBD_Tnp_Mut PF03108.10 g71203.t1 - 0.000000031 33 0.6 0.000000045 32.5 0.4 1.2 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:238509-238988 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~238509-238988 GTPase_Cys_C PF12631.2 g45681.t1 - 0.032 14.6 3.1 0.36 11.2 0.1 2.1 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:368818-369120 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~368818-369120 Bacteroid_pep PF14406.1 g66842.t1 - 0.083 13 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Ribosomally synthesized peptide in Bacteroidetes | Ref_seq=scaffold1443_contigs=30, transcript_loc=scaffold1443_contigs=30:101924-105417 Augustus predicted protein sequence Tobacco scaffold1443_contigs=30~101924-105417 DUF2893 PF11459.3 g59136.t1 - 0.0014 18.3 0.9 1.9 8.3 0.1 2.3 2 0 0 2 2 2 2 Protein of unknwon function (DUF2893) | Ref_seq=scaffold1281_contigs=3, transcript_loc=scaffold1281_contigs=3:66970-67665 Augustus predicted protein sequence Tobacco scaffold1281_contigs=3~66970-67665 Med5 PF08689.5 g127945.t1 - 0.014 13.1 0.8 0.014 13 0.5 1 1 0 0 1 1 1 0 Mediator complex subunit Med5 | Ref_seq=scaffold2843_contigs=1, transcript_loc=scaffold2843_contigs=1:1687-1974 Augustus predicted protein sequence Tobacco scaffold2843_contigs=1~1687-1974 Filo_glycop PF01611.11 g41541.t1 - 0.14 10.9 2.7 0.15 10.8 1.8 1.2 1 0 0 1 1 1 0 Filovirus glycoprotein | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:212710-213177 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~212710-213177 LRS4 PF10422.4 g79922.t1 - 0.0044 16.4 0.2 0.0046 16.3 0.1 1 1 0 0 1 1 1 1 Monopolin complex subunit LRS4 | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:211733-212023 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~211733-212023 ATHILA PF03078.10 g75561.t1 - 0.051 12.1 0 0.059 11.9 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:220559-220855 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~220559-220855 CBM_5_12 PF02839.9 g129922.t1 - 0.26 10.8 1.3 0.61 9.7 0.9 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain | Ref_seq=scaffold3207_contigs=1, transcript_loc=scaffold3207_contigs=1:30-296 Augustus predicted protein sequence Tobacco scaffold3207_contigs=1~30-296 DUF3859 PF12975.2 g9084.t1 - 0.12 12 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) | Ref_seq=scaffold352_contigs=11, transcript_loc=scaffold352_contigs=11:100745-101095 Augustus predicted protein sequence Tobacco scaffold352_contigs=11~100745-101095 DUF2186 PF09952.4 g41766.t1 - 0.0035 17.5 0.1 0.0055 16.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2186) | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:164483-165291 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~164483-165291 FH2 PF02181.18 g127083.t1 - 0.023 13.5 0.1 0.032 13.1 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold2813_contigs=1, transcript_loc=scaffold2813_contigs=1:20384-21240 Augustus predicted protein sequence Tobacco scaffold2813_contigs=1~20384-21240 CbiX PF01903.12 g128838.t1 - 0.078 13 0.1 0.13 12.3 0 1.3 1 0 0 1 1 1 0 CbiX | Ref_seq=scaffold2893_contigs=1, transcript_loc=scaffold2893_contigs=1:13297-15066 Augustus predicted protein sequence Tobacco scaffold2893_contigs=1~13297-15066 RhoGEF PF00621.15 g72678.t1 - 0.0037 17.1 0 0.0053 16.6 0 1.2 1 0 0 1 1 1 1 RhoGEF domain | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:385627-386113 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~385627-386113 F-box-like_2 PF13013.1 g78834.t1 - 0.14 11.8 0 0.21 11.3 0 1.2 1 0 0 1 1 1 0 F-box-like domain | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:58613-58918 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~58613-58918 Tropomyosin PF00261.15 g11077.t1 - 0.015 14.3 0.4 0.015 14.3 0.3 1.2 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:90092-90759 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~90092-90759 DUF4283 PF14111.1 g112057.t1 - 0.028 13.4 0.1 0.037 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) | Ref_seq=scaffold2602_contigs=46, transcript_loc=scaffold2602_contigs=46:66884-67174 Augustus predicted protein sequence Tobacco scaffold2602_contigs=46~66884-67174 DUF1409 PF07197.7 g124596.t1 - 0.012 15.6 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1409) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:101374-101979 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~101374-101979 PDCD2_C PF04194.8 g127696.t1 - 0.074 12.6 0 0.074 12.6 0 1.2 1 0 0 1 1 1 0 Programmed cell death protein 2, C-terminal putative domain | Ref_seq=scaffold2833_contigs=1, transcript_loc=scaffold2833_contigs=1:62713-62946 Augustus predicted protein sequence Tobacco scaffold2833_contigs=1~62713-62946 zf-like PF04071.7 g8184.t1 - 0.0019 17.8 2.6 0.0024 17.5 1.8 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:20018-20807 Augustus predicted protein sequence Tobacco scaffold331_contigs=3~20018-20807 ER-remodelling PF14755.1 g2244.t1 - 0.074 13.1 0.8 0.086 12.9 0.5 1.1 1 0 0 1 1 1 0 Intracellular membrane remodeller | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:62872-64153 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~62872-64153 FXR1P_C PF12235.3 g114026.t1 - 0.64 10.1 11.4 0.046 13.8 4.2 1.8 2 0 0 2 2 2 0 Fragile X-related 1 protein C terminal | Ref_seq=scaffold2641_contigs=5, transcript_loc=scaffold2641_contigs=5:115494-116736 Augustus predicted protein sequence Tobacco scaffold2641_contigs=5~115494-116736 NinF PF05810.7 g24843.t1 - 0.18 11.5 1.6 0.28 11 1.1 1.2 1 0 0 1 1 1 0 NinF protein | Ref_seq=scaffold677_contigs=5, transcript_loc=scaffold677_contigs=5:124982-125329 Augustus predicted protein sequence Tobacco scaffold677_contigs=5~124982-125329 RRN9 PF10680.4 g105022.t1 - 0.32 10.7 0 0.32 10.7 0 1.9 2 0 0 2 2 2 0 RNA polymerase I specific transcription initiation factor | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:113174-113509 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~113174-113509 UPF0547 PF10571.4 g44177.t1 - 0.021 14.5 0.4 0.085 12.5 0.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:174886-175564 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~174886-175564 Prog_receptor PF02161.10 g45226.t1 - 0.15 10.8 4 0.19 10.5 2.7 1.1 1 0 0 1 1 1 0 Progesterone receptor | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:103365-103992 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~103365-103992 YdjO PF14169.1 g31974.t1 - 0.0082 15.5 0.1 0.025 14 0 1.8 2 0 0 2 2 2 1 Cold-inducible protein YdjO | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:73107-73820 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~73107-73820 Tryp_FSAP PF08248.6 g75339.t1 - 0.17 12.2 4.1 0.17 12.2 2.9 2.6 2 0 0 2 2 2 0 Tryptophyllin-3 skin active peptide | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:191777-192040 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~191777-192040 Phage_connect_1 PF05135.8 g118801.t1 - 0.2 11.8 0.9 13 6 0.1 2.2 1 1 0 2 2 2 0 Phage gp6-like head-tail connector protein | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:133310-133735 Augustus predicted protein sequence Tobacco scaffold2706_contigs=4~133310-133735 DBD_Tnp_Mut PF03108.10 g21174.t1 - 0.0026 17.2 0.1 0.0043 16.5 0.1 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold587_contigs=13, transcript_loc=scaffold587_contigs=13:190281-190721 Augustus predicted protein sequence Tobacco scaffold587_contigs=13~190281-190721 Aa_trans PF01490.13 g70131.t1 - 0.026 13 0.3 0.023 13.1 0.2 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:295785-296045 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~295785-296045 Glyoxal_oxid_N PF07250.6 g119056.t1 - 0.05 12.6 0.1 0.091 11.8 0 1.4 2 0 0 2 2 2 0 Glyoxal oxidase N-terminus | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:863566-864115 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~863566-864115 Radical_SAM PF04055.16 g89388.t1 - 0.035 14.2 0 0.039 14.1 0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:30975-32254 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~30975-32254 Keratin_B2 PF01500.12 g37885.t1 - 0.076 12.7 7.4 0.11 12.3 5.1 1.4 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:188416-188802 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~188416-188802 DUF1985 PF09331.6 g34620.t1 - 0.0000019 27.7 0 0.0000023 27.5 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:77450-77824 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~77450-77824 T2SM PF04612.7 g115351.t1 - 0.11 12.2 0 0.13 12 0 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:135770-135979 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~135770-135979 Herpes_US12 PF05363.7 g80285.t1 - 0.019 15.4 0.5 0.029 14.8 0.3 1.3 1 0 0 1 1 1 0 Herpesvirus US12 family | Ref_seq=scaffold1715_contigs=5, transcript_loc=scaffold1715_contigs=5:67728-68278 Augustus predicted protein sequence Tobacco scaffold1715_contigs=5~67728-68278 PseudoU_synth_2 PF00849.17 g58983.t1 - 0.057 13.2 0.1 0.059 13.2 0.1 1.1 1 0 0 1 1 1 0 RNA pseudouridylate synthase | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:352589-352798 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~352589-352798 CENP-F_leu_zip PF10473.4 g30660.t1 - 0.0057 16.5 2.5 0.0091 15.8 1.7 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:112105-112665 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~112105-112665 MYT1 PF08474.6 g18481.t1 - 0.048 13.1 0.7 0.7 9.3 0.1 2.1 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:99638-100039 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~99638-100039 AhpC-TSA PF00578.16 g121031.t1 - 0.12 12 0 1.9 8.1 0 2.2 1 1 0 1 1 1 0 AhpC/TSA family | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:241634-242125 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~241634-242125 Peptidase_C27 PF05407.7 g117871.t1 - 0.051 13.2 0 0.06 13 0 1.1 1 0 0 1 1 1 0 Rubella virus endopeptidase | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:153285-153524 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~153285-153524 IBV_3A PF03617.8 g57657.t1 - 0.051 13.3 0.6 0.092 12.5 0.4 1.5 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1254_contigs=5, transcript_loc=scaffold1254_contigs=5:24024-24431 Augustus predicted protein sequence Tobacco scaffold1254_contigs=5~24024-24431 TAFA PF12020.3 g54152.t1 - 0.019 15 0.1 0.024 14.7 0.1 1.1 1 0 0 1 1 1 0 TAFA family | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:23863-24494 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~23863-24494 Cep57_MT_bd PF06657.8 g41892.t1 - 0.0066 16.3 0.8 0.015 15.1 0.6 1.6 1 0 0 1 1 1 1 Centrosome microtubule-binding domain of Cep57 | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:177528-177992 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~177528-177992 DUF977 PF06163.6 g28294.t1 - 0.061 13 0.1 0.074 12.7 0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:3711-3980 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~3711-3980 Uds1 PF15456.1 g49850.t1 - 0.052 13.5 1.2 0.085 12.8 0.8 1.2 1 0 0 1 1 1 0 Up-regulated During Septation | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:251125-251881 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~251125-251881 Cyclin_N PF00134.18 g103123.t1 - 0.13 11.8 0 0.13 11.8 0 1.1 1 0 0 1 1 1 0 Cyclin, N-terminal domain | Ref_seq=scaffold2301_contigs=7, transcript_loc=scaffold2301_contigs=7:15204-15903 Augustus predicted protein sequence Tobacco scaffold2301_contigs=7~15204-15903 VP4_2 PF08935.5 g60088.t1 - 0.025 15.1 0.3 0.035 14.7 0.2 1.2 1 0 0 1 1 1 0 Viral protein VP4 subunit | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:285874-288889 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~285874-288889 Spt5_N PF11942.3 g43887.t1 - 0.00036 21 0.8 0.00036 21 0.5 2.1 2 0 0 2 2 2 1 Spt5 transcription elongation factor, acidic N-terminal | Ref_seq=scaffold1030_contigs=11, transcript_loc=scaffold1030_contigs=11:249930-254746 Augustus predicted protein sequence Tobacco scaffold1030_contigs=11~249930-254746 ATHILA PF03078.10 g67131.t1 - 0.000068 21.6 0 0.000069 21.6 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:576186-576542 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~576186-576542 EB PF01683.13 g123364.t1 - 9.7 6.3 11.9 16 5.6 8.3 1.6 1 1 0 1 1 1 0 EB module | Ref_seq=scaffold2757_contigs=5, transcript_loc=scaffold2757_contigs=5:88646-89341 Augustus predicted protein sequence Tobacco scaffold2757_contigs=5~88646-89341 Flg_bb_rod PF00460.15 g124461.t1 - 0.063 13 0.1 0.097 12.4 0 1.2 1 0 0 1 1 1 0 Flagella basal body rod protein | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:91419-91667 Augustus predicted protein sequence Tobacco scaffold2762_contigs=5~91419-91667 DUF4377 PF14302.1 g102242.t1 - 0.0017 18.1 0.1 2.1 8.2 0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4377) | Ref_seq=scaffold2236_contigs=15, transcript_loc=scaffold2236_contigs=15:99902-100495 Augustus predicted protein sequence Tobacco scaffold2236_contigs=15~99902-100495 Hepatitis_core PF00906.15 g62121.t1 - 0.026 14.1 0.1 0.028 14 0.1 1 1 0 0 1 1 1 0 Hepatitis core antigen | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:25548-27132 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~25548-27132 ATHILA PF03078.10 g127159.t1 - 0.000000086 31.1 0 0.0073 14.9 0 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2815_contigs=1, transcript_loc=scaffold2815_contigs=1:17458-18099 Augustus predicted protein sequence Tobacco scaffold2815_contigs=1~17458-18099 DUF2103 PF09876.4 g64903.t1 - 0.027 14.2 0 0.035 13.8 0 1.1 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2103) | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:394004-394255 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~394004-394255 CAP_N PF01213.14 g104078.t1 - 0.055 12.7 1.2 0.058 12.6 0.8 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2328_contigs=3, transcript_loc=scaffold2328_contigs=3:6033-6554 Augustus predicted protein sequence Tobacco scaffold2328_contigs=3~6033-6554 RAMP4 PF06624.7 g73018.t1 - 0.0074 15.7 0 0.015 14.8 0 1.4 1 0 0 1 1 1 1 Ribosome associated membrane protein RAMP4 | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:73365-75318 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~73365-75318 NPV_P10 PF05531.7 g4304.t1 - 0.068 13.4 0.1 0.18 12 0.1 1.7 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:55739-55993 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~55739-55993 Myb_DNA-bind_3 PF12776.2 g71406.t1 - 0.029 15 0 0.052 14.1 0 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:843777-845398 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~843777-845398 YdjO PF14169.1 g18631.t1 - 0.039 13.3 0.3 0.065 12.6 0.2 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:340593-342769 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~340593-342769 KA1 PF02149.14 g7055.t1 - 0.051 13 0 5.9 6.4 0 2.2 2 0 0 2 2 2 0 Kinase associated domain 1 | Ref_seq=scaffold307_contigs=2, transcript_loc=scaffold307_contigs=2:111371-111792 Augustus predicted protein sequence Tobacco scaffold307_contigs=2~111371-111792 LRR_4 PF12799.2 g124887.t1 - 0.15 11.6 9.9 1.1 9 0.2 3.2 2 1 1 3 3 3 0 Leucine Rich repeats (2 copies) | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:121623-122318 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~121623-122318 Tropomyosin PF00261.15 g93657.t1 - 0.004 16.2 1.8 0.0052 15.8 1.3 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:284975-285565 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~284975-285565 RNA_pol_Rpb1_R PF05001.8 g4716.t1 - 0.12 12.5 1.3 0.41 10.8 0.9 2 1 0 0 1 1 1 0 RNA polymerase Rpb1 C-terminal repeat | Ref_seq=scaffold261_contigs=2, transcript_loc=scaffold261_contigs=2:4014-4331 Augustus predicted protein sequence Tobacco scaffold261_contigs=2~4014-4331 UPF0547 PF10571.4 g45523.t1 - 0.06 13 0.1 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:86728-87742 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~86728-87742 LZ_Tnp_IS66 PF13007.2 g14890.t1 - 0.22 12.1 1.8 0.38 11.4 1.3 1.4 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain | Ref_seq=scaffold482_contigs=7, transcript_loc=scaffold482_contigs=7:225808-226695 Augustus predicted protein sequence Tobacco scaffold482_contigs=7~225808-226695 UBN2 PF14223.1 g63463.t1 - 0.00000021 30.7 0.4 0.00000022 30.6 0.3 1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:414450-414653 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~414450-414653 Transferrin PF00405.12 g49823.t1 - 0.15 10.9 0 0.19 10.5 0 1.1 1 0 0 1 1 1 0 Transferrin | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:188325-191021 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~188325-191021 bZIP_2 PF07716.10 g71087.t1 - 3.9 7.3 7.9 26 4.7 0.3 3.6 3 1 1 4 4 4 0 Basic region leucine zipper | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:11230-11730 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~11230-11730 Fer4_21 PF14697.1 g95895.t1 - 0.2 11.5 0.2 0.2 11.5 0.1 1.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain | Ref_seq=scaffold2078_contigs=12, transcript_loc=scaffold2078_contigs=12:294006-294602 Augustus predicted protein sequence Tobacco scaffold2078_contigs=12~294006-294602 VIGSSK PF14773.1 g8760.t1 - 0.013 15.4 0 0.026 14.4 0 1.5 1 0 0 1 1 1 0 Helicase-associated putative binding domain, C-terminal | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:134036-137155 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~134036-137155 SOG2 PF10428.4 g19047.t1 - 0.27 9.8 10.2 0.31 9.6 7.1 1 1 0 0 1 1 1 0 RAM signalling pathway protein | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:191777-192341 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~191777-192341 MxiH PF09392.5 g1888.t1 - 0.91 10.1 4 1.2 9.6 2.8 1.2 1 0 0 1 1 1 0 Type III secretion needle MxiH like | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:164963-165308 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~164963-165308 Herpes_UL56 PF04534.7 g54015.t1 - 0.055 13.1 0.2 0.062 13 0.2 1.1 1 0 0 1 1 1 0 Herpesvirus UL56 protein | Ref_seq=scaffold1196_contigs=5, transcript_loc=scaffold1196_contigs=5:11806-12009 Augustus predicted protein sequence Tobacco scaffold1196_contigs=5~11806-12009 UCR_6-4kD PF08997.5 g80091.t1 - 0.24 11.1 0.8 5.5 6.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein | Ref_seq=scaffold1709_contigs=7, transcript_loc=scaffold1709_contigs=7:99498-99923 Augustus predicted protein sequence Tobacco scaffold1709_contigs=7~99498-99923 MFS_1 PF07690.11 g85555.t1 - 0.037 12.7 1.8 0.039 12.6 1.2 1 1 0 0 1 1 1 0 Major Facilitator Superfamily | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:46807-47070 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~46807-47070 LigD_N PF13298.1 g122146.t1 - 0.037 14.1 0 0.04 14 0 1.2 1 0 0 1 1 1 0 DNA polymerase Ligase (LigD) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:353286-354071 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~353286-354071 DUF2360 PF10152.4 g105859.t1 - 0.18 12 3.9 0.24 11.6 2.7 1.3 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:710407-710739 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~710407-710739 DUF1177 PF06675.6 g65901.t1 - 0.014 14 1.9 0.77 8.3 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1177) | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:26565-28207 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~26565-28207 Myosin_tail_1 PF01576.14 g77976.t1 - 0.0057 14.4 1 0.0078 14 0.7 1.2 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:136627-138634 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~136627-138634 DUF4406 PF14359.1 g75505.t1 - 0.0048 16.9 0 0.0052 16.8 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) | Ref_seq=scaffold1570_contigs=4, transcript_loc=scaffold1570_contigs=4:106975-107181 Augustus predicted protein sequence Tobacco scaffold1570_contigs=4~106975-107181 IBV_3A PF03617.8 g89660.t1 - 0.049 13.3 1.3 0.089 12.5 0.9 1.4 1 0 0 1 1 1 0 IBV 3A protein | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:63656-64631 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~63656-64631 Glyco_hydro_65C PF03633.10 g88695.t1 - 0.11 12.6 0 0.26 11.3 0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:190931-193345 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~190931-193345 BatA PF07584.6 g74517.t1 - 0.067 13.3 0.1 0.08 13.1 0 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal | Ref_seq=scaffold1557_contigs=8, transcript_loc=scaffold1557_contigs=8:39902-40162 Augustus predicted protein sequence Tobacco scaffold1557_contigs=8~39902-40162 Cep57_CLD_2 PF14197.1 g32735.t1 - 0.0067 16.3 1.3 0.037 13.9 0.9 1.9 1 1 0 1 1 1 1 Centrosome localisation domain of PPC89 | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:786074-786355 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~786074-786355 MerR-DNA-bind PF09278.6 g86335.t1 - 0.0043 17.4 5 0.012 15.9 0.2 2.4 2 0 0 2 2 2 1 MerR, DNA binding | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:67269-67790 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~67269-67790 DUF2076 PF09849.4 g63212.t1 - 3.6 7.5 7.1 6.2 6.7 4.9 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:105701-107533 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~105701-107533 Reo_sigmaC PF04582.7 g3420.t1 - 0.14 11.2 1 0.17 11 0.7 1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold234_contigs=2, transcript_loc=scaffold234_contigs=2:30292-30579 Augustus predicted protein sequence Tobacco scaffold234_contigs=2~30292-30579 CHDNT PF08073.7 g35211.t1 - 0.14 11.8 0 0.2 11.3 0 1.3 1 0 0 1 1 1 0 CHDNT (NUC034) domain | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:202108-202311 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~202108-202311 4HBT_3 PF13622.1 g22303.t1 - 5.9 6.5 7.6 7.3 6.2 5.2 1.3 1 0 0 1 1 1 0 Thioesterase-like superfamily | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:87553-88164 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~87553-88164 Pentapeptide_3 PF13576.1 g107223.t1 - 0.0019 18 0.1 0.0047 16.7 0.1 1.6 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:954670-954990 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~954670-954990 BSP_II PF05432.6 g4816.t1 - 0.024 13.8 4.9 0.032 13.4 3.4 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:95836-96557 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~95836-96557 VWA PF00092.23 g39557.t1 - 0.041 13.6 0 0.061 13 0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:56532-56930 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~56532-56930 Mito_fiss_reg PF05308.6 g25989.t1 - 0.096 12 4.7 0.11 11.8 3.3 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:239396-239812 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~239396-239812 CLU_N PF15044.1 g50782.t1 - 9.1 6.5 17.4 33 4.7 0.2 5.9 2 2 5 7 7 7 0 Mitochondrial function, CLU-N-term | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:125904-128470 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~125904-128470 NESP55 PF06390.7 g94707.t1 - 0.11 11.7 2.4 0.18 11.1 1.6 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:340936-341439 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~340936-341439 UBN2_2 PF14227.1 g59726.t1 - 0.11 12.1 1 0.12 11.9 0 1.6 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:74272-74682 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~74272-74682 Nif11 PF07862.6 g4405.t1 - 0.11 12.5 0.2 0.24 11.3 0.2 1.5 1 0 0 1 1 1 0 Nitrogen fixation protein of unknown function | Ref_seq=scaffold257_contigs=2, transcript_loc=scaffold257_contigs=2:154012-156232 Augustus predicted protein sequence Tobacco scaffold257_contigs=2~154012-156232 Tropomyosin PF00261.15 g60016.t1 - 0.0054 15.8 1.3 0.0068 15.5 0.9 1.1 1 0 0 1 1 1 1 Tropomyosin | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:74412-74897 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~74412-74897 Candida_ALS_N PF11766.3 g11662.t1 - 0.0068 15.3 0.1 0.0094 14.8 0 1.2 1 0 0 1 1 1 1 Cell-wall agglutinin N-terminal ligand-sugar binding | Ref_seq=scaffold409_contigs=16, transcript_loc=scaffold409_contigs=16:663699-664165 Augustus predicted protein sequence Tobacco scaffold409_contigs=16~663699-664165 APG6 PF04111.7 g57340.t1 - 0.019 14 1.7 0.023 13.7 1.2 1 1 0 0 1 1 1 0 Autophagy protein Apg6 | Ref_seq=scaffold1249_contigs=2, transcript_loc=scaffold1249_contigs=2:79238-81088 Augustus predicted protein sequence Tobacco scaffold1249_contigs=2~79238-81088 GP41 PF00517.12 g120030.t1 - 0.1 12.1 3.6 0.21 11.1 2.5 1.5 1 0 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:281496-282236 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~281496-282236 DUF307 PF03733.8 g39908.t1 - 0.36 11.3 3.7 0.64 10.4 2.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF307) | Ref_seq=scaffold962_contigs=5, transcript_loc=scaffold962_contigs=5:119835-120233 Augustus predicted protein sequence Tobacco scaffold962_contigs=5~119835-120233 Retrotrans_gag PF03732.12 g18638.t1 - 0.000024 24.3 0.2 0.000036 23.7 0.1 1.3 1 0 0 1 1 1 1 Retrotransposon gag protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:352667-353092 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~352667-353092 zf-CCHC_4 PF14392.1 g8839.t1 - 0.0064 16.1 0.9 0.0095 15.5 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:306441-306659 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~306441-306659 Cytochrom_B_N PF00033.14 g87101.t1 - 0.051 12.9 0.1 0.071 12.4 0 1.2 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:8471-12635 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~8471-12635 HSBP1 PF06825.7 g82094.t1 - 0.11 12.1 5.3 1.7 8.2 0.3 2.3 2 0 0 2 2 2 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:654677-654937 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~654677-654937 HALZ PF02183.13 g95673.t1 - 0.19 11.4 5.1 0.096 12.4 0.7 2.5 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:57535-58077 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~57535-58077 zf-CCHC PF00098.18 g44324.t1 - 0.0019 18 0.3 0.0031 17.3 0.2 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:259128-259955 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~259128-259955 SYCE1 PF15233.1 g23188.t1 - 0.1 12.5 0.2 0.14 12 0.1 1.3 1 1 0 1 1 1 0 Synaptonemal complex central element protein 1 | Ref_seq=scaffold639_contigs=2, transcript_loc=scaffold639_contigs=2:37743-38825 Augustus predicted protein sequence Tobacco scaffold639_contigs=2~37743-38825 IFP_35_N PF07334.8 g66586.t1 - 0.018 15 3.3 0.028 14.3 2.2 1.6 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:134715-135005 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~134715-135005 UCR_UQCRX_QCR9 PF05365.7 g109821.t1 - 0.033 13.8 0.2 6.6 6.4 0 2.1 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:245124-246414 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~245124-246414 DUF1985 PF09331.6 g96404.t1 - 0.042 13.6 0 0.047 13.5 0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2105_contigs=7, transcript_loc=scaffold2105_contigs=7:125039-125392 Augustus predicted protein sequence Tobacco scaffold2105_contigs=7~125039-125392 HXXSHH PF07586.6 g19290.t1 - 0.015 14.2 0.2 0.017 14 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) | Ref_seq=scaffold565_contigs=2, transcript_loc=scaffold565_contigs=2:6774-7099 Augustus predicted protein sequence Tobacco scaffold565_contigs=2~6774-7099 IFRD_C PF04836.7 g103871.t1 - 0.08 13.1 0 0.21 11.7 0 1.7 2 0 0 2 2 2 0 Interferon-related protein conserved region | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:269183-269692 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~269183-269692 Ribosomal_S14 PF00253.16 g55961.t1 - 0.056 12.8 1.8 0.081 12.3 1.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:231998-232216 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~231998-232216 Nairovirus_M PF07948.6 g72709.t1 - 0.035 12.2 0.7 0.041 12 0.5 1 1 0 0 1 1 1 0 Nairovirus M polyprotein-like | Ref_seq=scaffold1520_contigs=13, transcript_loc=scaffold1520_contigs=13:44663-45193 Augustus predicted protein sequence Tobacco scaffold1520_contigs=13~44663-45193 BofC_C PF08955.5 g22488.t1 - 0.033 14.2 0.7 3.1 7.9 0.3 2.4 2 0 0 2 2 2 0 BofC C-terminal domain | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:88659-90186 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~88659-90186 His_kinase PF06580.8 g103694.t1 - 0.051 13.4 0.1 0.061 13.2 0 1.1 1 0 0 1 1 1 0 Histidine kinase | Ref_seq=scaffold2312_contigs=19, transcript_loc=scaffold2312_contigs=19:72511-72720 Augustus predicted protein sequence Tobacco scaffold2312_contigs=19~72511-72720 UPF0561 PF10573.4 g33534.t1 - 2 8.2 4.7 0.71 9.7 1.3 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:14318-15465 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~14318-15465 PCI_Csn8 PF10075.4 g112208.t1 - 0.089 12.5 0.6 0.096 12.4 0.4 1 1 0 0 1 1 1 0 COP9 signalosome, subunit CSN8 | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:230456-230677 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~230456-230677 NPV_P10 PF05531.7 g114522.t1 - 0.0026 17.9 0.9 0.0039 17.3 0.6 1.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:322668-323645 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~322668-323645 PTS_EIIA_2 PF00359.17 g72508.t1 - 0.042 13.5 0 0.057 13.1 0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:18331-18591 Augustus predicted protein sequence Tobacco scaffold1509_contigs=13~18331-18591 RPAP3_C PF13877.1 g39373.t1 - 0.12 12.4 0 0.17 11.8 0 1.2 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 | Ref_seq=scaffold954_contigs=1, transcript_loc=scaffold954_contigs=1:25828-26109 Augustus predicted protein sequence Tobacco scaffold954_contigs=1~25828-26109 Baculo_11_kDa PF06143.6 g123707.t1 - 0.0054 16 0.7 0.0099 15.2 0.5 1.4 1 0 0 1 1 1 1 Baculovirus 11 kDa family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:332480-334217 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~332480-334217 E2_bind PF08825.5 g13699.t1 - 0.000012 24.9 14.7 0.17 11.7 0.5 3.8 3 0 0 3 3 3 3 E2 binding domain | Ref_seq=scaffold451_contigs=13, transcript_loc=scaffold451_contigs=13:355515-358381 Augustus predicted protein sequence Tobacco scaffold451_contigs=13~355515-358381 Late_protein_L2 PF00513.13 g117895.t1 - 0.055 12.3 0.1 0.058 12.2 0.1 1 1 0 0 1 1 1 0 Late Protein L2 | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:199626-199922 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~199626-199922 ClpB_D2-small PF10431.4 g56063.t1 - 0.047 13.5 0.7 0.065 13.1 0.5 1.2 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:6771-7088 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~6771-7088 RVT_3 PF13456.1 g55852.t1 - 0.000087 22.2 0 0.00015 21.5 0 1.4 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1233_contigs=6, transcript_loc=scaffold1233_contigs=6:102776-102982 Augustus predicted protein sequence Tobacco scaffold1233_contigs=6~102776-102982 Dpoe2NT PF12213.3 g16439.t1 - 0.075 12.9 0.2 1.2 9.1 0 2.3 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal | Ref_seq=scaffold515_contigs=6, transcript_loc=scaffold515_contigs=6:133697-134008 Augustus predicted protein sequence Tobacco scaffold515_contigs=6~133697-134008 Bac_DNA_binding PF00216.16 g101836.t1 - 0.04 13.9 0.6 0.058 13.4 0.4 1.2 1 0 0 1 1 1 0 Bacterial DNA-binding protein | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:75412-75708 Augustus predicted protein sequence Tobacco scaffold2223_contigs=8~75412-75708 Ycf4 PF02392.11 g16112.t1 - 0.11 11.7 0.1 0.22 10.7 0 1.4 1 0 0 1 1 1 0 Ycf4 | Ref_seq=scaffold509_contigs=2, transcript_loc=scaffold509_contigs=2:331-1196 Augustus predicted protein sequence Tobacco scaffold509_contigs=2~331-1196 Pox_G7 PF05503.7 g23593.t1 - 0.012 14.2 0 0.013 14.1 0 1 1 0 0 1 1 1 0 Poxvirus G7-like | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:146637-146927 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~146637-146927 Host_attach PF10116.4 g127282.t1 - 0.043 14 0.2 0.043 14 0.1 1.4 2 0 0 2 2 2 0 Protein required for attachment to host cells | Ref_seq=scaffold2818_contigs=1, transcript_loc=scaffold2818_contigs=1:37289-37956 Augustus predicted protein sequence Tobacco scaffold2818_contigs=1~37289-37956 Transcrip_act PF04949.8 g129794.t1 - 0.024 14.2 1.1 0.028 14 0.8 1 1 0 0 1 1 1 0 Transcriptional activator | Ref_seq=scaffold3064_contigs=1, transcript_loc=scaffold3064_contigs=1:5143-5460 Augustus predicted protein sequence Tobacco scaffold3064_contigs=1~5143-5460 Mitochondr_Som1 PF11093.3 g13747.t1 - 0.12 12.1 0.6 0.2 11.4 0.2 1.5 1 1 0 1 1 1 0 Mitochondrial export protein Som1 | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:21360-21680 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~21360-21680 PCIF1_WW PF12237.3 g21590.t1 - 0.14 11.4 0 0.16 11.2 0 1.1 1 0 0 1 1 1 0 Phosphorylated CTD interacting factor 1 WW domain | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:92171-92440 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~92171-92440 YscW PF09619.5 g805.t1 - 0.053 13.2 0 0.075 12.7 0 1.4 1 0 0 1 1 1 0 Type III secretion system lipoprotein chaperone (YscW) | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:24946-25272 Augustus predicted protein sequence Tobacco scaffold53_contigs=4~24946-25272 ATPase-cat_bd PF12156.3 g46360.t1 - 0.11 13 0 0.14 12.7 0 1.2 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:202720-203052 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~202720-203052 zf-CCHC PF00098.18 g94282.t1 - 0.0027 17.5 0.5 0.0027 17.5 0.4 2.3 3 0 0 3 3 3 1 Zinc knuckle | Ref_seq=scaffold2037_contigs=26, transcript_loc=scaffold2037_contigs=26:483740-485172 Augustus predicted protein sequence Tobacco scaffold2037_contigs=26~483740-485172 DUF2543 PF10820.3 g56328.t1 - 0.00084 19.2 0.1 0.0012 18.7 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2543) | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:457718-458420 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~457718-458420 FYDLN_acid PF09538.5 g2198.t1 - 0.03 14.8 5.3 0.033 14.7 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:2831-3215 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~2831-3215 DUF1900 PF08954.6 g72536.t1 - 0.0035 16.8 0 2.4 7.7 0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1900) | Ref_seq=scaffold1509_contigs=13, transcript_loc=scaffold1509_contigs=13:67801-68346 Augustus predicted protein sequence Tobacco scaffold1509_contigs=13~67801-68346 FANCAA PF15146.1 g118541.t1 - 0.13 11.1 0 0.16 10.8 0 1.1 1 0 0 1 1 1 0 Fanconi anemia-associated | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:153255-153578 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~153255-153578 Coatamer_beta_C PF07718.7 g108823.t1 - 0.12 12 0 0.21 11.2 0 1.4 1 0 0 1 1 1 0 Coatomer beta C-terminal region | Ref_seq=scaffold2449_contigs=12, transcript_loc=scaffold2449_contigs=12:308843-310453 Augustus predicted protein sequence Tobacco scaffold2449_contigs=12~308843-310453 EBV-NA3 PF05009.7 g9713.t1 - 0.18 11 1.4 0.19 10.9 1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:163008-163235 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~163008-163235 Lyase_N PF09092.6 g117234.t1 - 0.013 15.1 0.1 0.014 15 0 1.1 1 0 0 1 1 1 0 Lyase, N terminal | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:195164-195445 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~195164-195445 DBD_Tnp_Mut PF03108.10 g112712.t1 - 0.00048 19.6 0 0.00075 19 0 1.4 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:202105-202863 Augustus predicted protein sequence Tobacco scaffold2615_contigs=8~202105-202863 SF3b1 PF08920.5 g13083.t1 - 0.25 11.3 2.3 0.28 11.2 1.6 1 1 0 0 1 1 1 0 Splicing factor 3B subunit 1 | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:60349-61139 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~60349-61139 DUF4219 PF13961.1 g75709.t1 - 0.0089 15.4 0.4 0.021 14.2 0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1580_contigs=5, transcript_loc=scaffold1580_contigs=5:6862-7185 Augustus predicted protein sequence Tobacco scaffold1580_contigs=5~6862-7185 DUF1075 PF06388.6 g52356.t1 - 0.1 12.2 4.2 0.26 10.9 1.7 2 1 1 1 2 2 2 0 Protein of unknown function (DUF1075) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:98197-98809 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~98197-98809 DBD_Tnp_Mut PF03108.10 g40648.t1 - 0.017 14.6 0.2 0.04 13.5 0.1 1.7 1 1 0 1 1 1 0 MuDR family transposase | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:215151-215477 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~215151-215477 UTP15_C PF09384.5 g56292.t1 - 0.03 14 0.1 0.04 13.6 0 1.1 1 0 0 1 1 1 0 UTP15 C terminal | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:390009-390350 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~390009-390350 DUF2763 PF10961.3 g43513.t1 - 0.22 11.9 10.7 0.32 11.4 7.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2763) | Ref_seq=scaffold1021_contigs=20, transcript_loc=scaffold1021_contigs=20:325514-326155 Augustus predicted protein sequence Tobacco scaffold1021_contigs=20~325514-326155 eIF3g PF12353.3 g94549.t1 - 0.16 11.8 0.3 0.25 11.2 0.2 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:30767-31301 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~30767-31301 ATHILA PF03078.10 g109498.t1 - 0.00059 18.5 0.1 0.14 10.7 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:108269-108646 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~108269-108646 RXT2_N PF08595.6 g59351.t1 - 0.0071 16.1 1.6 0.012 15.4 1.1 1.4 1 0 0 1 1 1 1 RXT2-like, N-terminal | Ref_seq=scaffold1290_contigs=9, transcript_loc=scaffold1290_contigs=9:99661-100005 Augustus predicted protein sequence Tobacco scaffold1290_contigs=9~99661-100005 ATP-synt_E_2 PF08112.6 g78826.t1 - 0.086 12.9 0 0.13 12.3 0 1.3 1 0 0 1 1 1 0 ATP synthase epsilon subunit | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:37741-38076 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~37741-38076 60KD_IMP PF02096.15 g72235.t1 - 0.096 12.3 1 0.11 12.1 0.7 1.1 1 0 0 1 1 1 0 60Kd inner membrane protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:584199-584456 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~584199-584456 Tmemb_55A PF09788.4 g30561.t1 - 0.11 11.5 0.8 0.12 11.5 0.6 1 1 0 0 1 1 1 0 Transmembrane protein 55A | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1177173-1177433 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1177173-1177433 ATHILA PF03078.10 g28471.t1 - 1.1E-010 40.7 0.3 1.3E-010 40.4 0.2 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold746_contigs=6, transcript_loc=scaffold746_contigs=6:175105-175689 Augustus predicted protein sequence Tobacco scaffold746_contigs=6~175105-175689 RVT_3 PF13456.1 g15103.t1 - 0.0001 21.9 0.2 0.00022 20.9 0.1 1.5 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold487_contigs=1, transcript_loc=scaffold487_contigs=1:31450-32425 Augustus predicted protein sequence Tobacco scaffold487_contigs=1~31450-32425 DUF2517 PF10725.4 g40853.t1 - 0.015 14.9 0.2 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2517) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:1377-3730 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~1377-3730 Transposase_28 PF04195.7 g128297.t1 - 0.000096 21.7 0.5 0.00017 20.9 0.3 1.5 1 1 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold2861_contigs=1, transcript_loc=scaffold2861_contigs=1:16796-17281 Augustus predicted protein sequence Tobacco scaffold2861_contigs=1~16796-17281 Cytadhesin_P30 PF07271.6 g82468.t1 - 0.0031 16.8 6 0.0035 16.6 4.2 1.1 1 0 0 1 1 1 1 Cytadhesin P30/P32 | Ref_seq=scaffold1745_contigs=6, transcript_loc=scaffold1745_contigs=6:11588-11947 Augustus predicted protein sequence Tobacco scaffold1745_contigs=6~11588-11947 Hc1 PF07432.8 g7096.t1 - 0.033 14.3 0.2 0.043 13.9 0.1 1.1 1 0 0 1 1 1 0 Histone H1-like protein Hc1 | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:33263-33478 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~33263-33478 DNAJ_related PF12339.3 g123657.t1 - 0.11 12.3 0.3 0.13 12.1 0.2 1.1 1 0 0 1 1 1 0 DNA-J related protein | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:230838-231337 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~230838-231337 DUF3673 PF12425.3 g122356.t1 - 0.13 12 1.4 0.2 11.4 1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3673) | Ref_seq=scaffold2744_contigs=5, transcript_loc=scaffold2744_contigs=5:85249-85482 Augustus predicted protein sequence Tobacco scaffold2744_contigs=5~85249-85482 RVT_3 PF13456.1 g85329.t1 - 0.059 13.1 0 0.11 12.3 0 1.5 2 0 0 2 2 2 0 Reverse transcriptase-like | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:216814-217062 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~216814-217062 DUF3543 PF12063.3 g118566.t1 - 0.08 12.1 0.1 0.09 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3543) | Ref_seq=scaffold2703_contigs=7, transcript_loc=scaffold2703_contigs=7:204873-205127 Augustus predicted protein sequence Tobacco scaffold2703_contigs=7~204873-205127 INTS2 PF14750.1 g79034.t1 - 0.0099 13.4 1.1 0.0099 13.4 0.8 1 1 0 0 1 1 1 1 Integrator complex subunit 2 | Ref_seq=scaffold1685_contigs=26, transcript_loc=scaffold1685_contigs=26:179751-180041 Augustus predicted protein sequence Tobacco scaffold1685_contigs=26~179751-180041 DUF4257 PF14074.1 g73009.t1 - 0.0022 17.6 0.3 1.7 8.3 0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF4257) | Ref_seq=scaffold1528_contigs=14, transcript_loc=scaffold1528_contigs=14:54895-55553 Augustus predicted protein sequence Tobacco scaffold1528_contigs=14~54895-55553 RNA_pol_3_Rpc31 PF11705.3 g66127.t1 - 0.16 11.8 5.6 0.17 11.8 3.9 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 | Ref_seq=scaffold1435_contigs=2, transcript_loc=scaffold1435_contigs=2:9623-9904 Augustus predicted protein sequence Tobacco scaffold1435_contigs=2~9623-9904 CTX_RstB PF07459.6 g54197.t1 - 0.013 15.4 0 0.03 14.2 0 1.7 1 0 0 1 1 1 0 CTX phage RstB protein | Ref_seq=scaffold1204_contigs=5, transcript_loc=scaffold1204_contigs=5:119147-121205 Augustus predicted protein sequence Tobacco scaffold1204_contigs=5~119147-121205 MHCassoc_trimer PF08831.5 g31941.t1 - 0.056 13.2 0.1 0.12 12.2 0 1.6 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:13632-15939 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~13632-15939 Ribosomal_L29e PF01779.12 g43995.t1 - 0.31 10.9 2.6 1.1 9.2 0.4 2.2 2 0 0 2 2 2 0 Ribosomal L29e protein family | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:131529-132229 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~131529-132229 Troponin-I_N PF11636.3 g21293.t1 - 0.2 11.3 5.5 0.15 11.7 1.4 2.3 2 0 0 2 2 2 0 Troponin I residues 1-32 | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:35292-35762 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~35292-35762 Prok-RING_1 PF14446.1 g67531.t1 - 0.042 13.5 0.8 0.055 13.1 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 | Ref_seq=scaffold1448_contigs=3, transcript_loc=scaffold1448_contigs=3:41898-42101 Augustus predicted protein sequence Tobacco scaffold1448_contigs=3~41898-42101 HALZ PF02183.13 g109043.t1 - 0.083 12.6 2.6 0.25 11 1.5 2.2 1 1 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold2473_contigs=16, transcript_loc=scaffold2473_contigs=16:35213-35933 Augustus predicted protein sequence Tobacco scaffold2473_contigs=16~35213-35933 Na_K-ATPase PF00287.13 g31490.t1 - 0.13 11 0 0.23 10.1 0 1.3 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain | Ref_seq=scaffold795_contigs=8, transcript_loc=scaffold795_contigs=8:194683-195704 Augustus predicted protein sequence Tobacco scaffold795_contigs=8~194683-195704 DUF1543 PF07566.7 g65828.t1 - 0.12 11.8 0.1 0.25 10.8 0 1.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1543) | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:182482-183694 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~182482-183694 DUF2681 PF10883.3 g106847.t1 - 0.13 12.4 1.3 0.18 11.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) | Ref_seq=scaffold2379_contigs=10, transcript_loc=scaffold2379_contigs=10:117121-117435 Augustus predicted protein sequence Tobacco scaffold2379_contigs=10~117121-117435 Phage_portal_2 PF05136.8 g110482.t1 - 0.032 12.7 0.8 2.8 6.3 0.1 2.1 1 1 1 2 2 2 0 Phage portal protein, lambda family | Ref_seq=scaffold2555_contigs=31, transcript_loc=scaffold2555_contigs=31:71284-71980 Augustus predicted protein sequence Tobacco scaffold2555_contigs=31~71284-71980 Dec-1 PF04624.9 g80442.t1 - 0.017 14.7 0.6 0.03 13.9 0.4 1.3 1 0 0 1 1 1 0 Dec-1 repeat | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:20159-20973 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~20159-20973 DUF677 PF05055.7 g44175.t1 - 0.039 12.6 0 0.04 12.6 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:167427-168909 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~167427-168909 MOZART1 PF12554.3 g21882.t1 - 0.14 11.6 0.1 0.21 11.1 0 1.2 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated | Ref_seq=scaffold604_contigs=5, transcript_loc=scaffold604_contigs=5:135037-135252 Augustus predicted protein sequence Tobacco scaffold604_contigs=5~135037-135252 zf-CCHC PF00098.18 g44044.t1 - 0.00072 19.3 1.4 0.0012 18.6 1 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1032_contigs=3, transcript_loc=scaffold1032_contigs=3:40199-40417 Augustus predicted protein sequence Tobacco scaffold1032_contigs=3~40199-40417 TAT_ubiq PF07706.7 g78923.t1 - 0.074 13 0 76 3.3 0 3.7 4 0 0 4 4 4 0 Aminotransferase ubiquitination site | Ref_seq=scaffold1675_contigs=9, transcript_loc=scaffold1675_contigs=9:38020-38625 Augustus predicted protein sequence Tobacco scaffold1675_contigs=9~38020-38625 Endotoxin_N PF03945.9 g10568.t1 - 0.045 13.1 0 0.069 12.5 0 1.3 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:302555-303277 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~302555-303277 DUF2684 PF10885.3 g34864.t1 - 0.055 13.3 0.1 0.097 12.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2684) | Ref_seq=scaffold862_contigs=2, transcript_loc=scaffold862_contigs=2:86168-86527 Augustus predicted protein sequence Tobacco scaffold862_contigs=2~86168-86527 CENP-O PF09496.5 g11055.t1 - 0.0015 18.7 0.6 0.0028 17.8 0.2 1.6 1 1 1 2 2 2 1 Cenp-O kinetochore centromere component | Ref_seq=scaffold403_contigs=6, transcript_loc=scaffold403_contigs=6:59579-60025 Augustus predicted protein sequence Tobacco scaffold403_contigs=6~59579-60025 CENP-F_leu_zip PF10473.4 g27984.t1 - 0.045 13.6 2 0.13 12 1.4 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:701808-702200 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~701808-702200 IFP_35_N PF07334.8 g19679.t1 - 0.064 13.2 0.6 0.064 13.2 0.4 2 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold571_contigs=4, transcript_loc=scaffold571_contigs=4:119541-120157 Augustus predicted protein sequence Tobacco scaffold571_contigs=4~119541-120157 ATHILA PF03078.10 g11243.t1 - 9.7E-009 34.3 0 0.000000011 34.1 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:9666-10076 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~9666-10076 DUF3019 PF11456.3 g101980.t1 - 0.038 14.3 0.7 0.085 13.1 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3019) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:231812-232531 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~231812-232531 FAM176 PF14851.1 g37259.t1 - 0.0043 16.7 1.4 0.0043 16.7 1 1.5 2 0 0 2 2 2 1 FAM176 family | Ref_seq=scaffold917_contigs=1, transcript_loc=scaffold917_contigs=1:1452-1955 Augustus predicted protein sequence Tobacco scaffold917_contigs=1~1452-1955 DUF4293 PF14126.1 g61631.t1 - 0.2 11.5 4.3 0.38 10.6 2.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) | Ref_seq=scaffold1336_contigs=9, transcript_loc=scaffold1336_contigs=9:148531-148815 Augustus predicted protein sequence Tobacco scaffold1336_contigs=9~148531-148815 PsbP PF01789.11 g2910.t1 - 0.04 13.3 0.1 0.21 11 0 1.9 2 0 0 2 2 2 0 PsbP | Ref_seq=scaffold221_contigs=3, transcript_loc=scaffold221_contigs=3:33002-34258 Augustus predicted protein sequence Tobacco scaffold221_contigs=3~33002-34258 Telomere_Sde2 PF13019.1 g56209.t1 - 0.019 14.6 0 0.021 14.5 0 1.1 1 0 0 1 1 1 0 Telomere stability and silencing | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:240822-241094 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~240822-241094 GcrA PF07750.6 g11087.t1 - 0.072 13.2 0.6 0.54 10.4 0.1 2 1 1 1 2 2 2 0 GcrA cell cycle regulator | Ref_seq=scaffold404_contigs=9, transcript_loc=scaffold404_contigs=9:39437-39760 Augustus predicted protein sequence Tobacco scaffold404_contigs=9~39437-39760 SMN PF06003.7 g72005.t1 - 0.021 13.9 0.2 0.024 13.7 0.2 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:83995-85178 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~83995-85178 DUF755 PF05501.6 g2891.t1 - 0.18 11.8 8.7 0.26 11.3 6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF755) | Ref_seq=scaffold219_contigs=6, transcript_loc=scaffold219_contigs=6:215344-215718 Augustus predicted protein sequence Tobacco scaffold219_contigs=6~215344-215718 EMP24_GP25L PF01105.19 g25920.t1 - 0.027 14.2 0 0.029 14.1 0 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD | Ref_seq=scaffold707_contigs=5, transcript_loc=scaffold707_contigs=5:79684-80102 Augustus predicted protein sequence Tobacco scaffold707_contigs=5~79684-80102 NDUF_B8 PF05821.6 g105192.t1 - 0.022 14.4 0 0.025 14.2 0 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:522622-522927 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~522622-522927 UPF0547 PF10571.4 g107278.t1 - 0.087 12.5 0.2 0.39 10.4 0 2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1077729-1078754 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1077729-1078754 DUF713 PF05218.9 g56478.t1 - 0.0077 15.9 0 0.01 15.5 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF713) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:230071-231480 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~230071-231480 RVT_3 PF13456.1 g105761.t1 - 0.00000091 28.5 0.1 0.0000014 28 0.1 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:198497-198868 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~198497-198868 NOA36 PF06524.7 g25068.t1 - 0.00023 20.5 10.8 0.00026 20.3 7.5 1 1 0 0 1 1 1 1 NOA36 protein | Ref_seq=scaffold686_contigs=3, transcript_loc=scaffold686_contigs=3:84479-84975 Augustus predicted protein sequence Tobacco scaffold686_contigs=3~84479-84975 Consortin_C PF15281.1 g65710.t1 - 9.3 5.7 6.6 15 5.1 4.6 1.3 1 0 0 1 1 1 0 Consortin C-terminus | Ref_seq=scaffold1426_contigs=9, transcript_loc=scaffold1426_contigs=9:137003-137377 Augustus predicted protein sequence Tobacco scaffold1426_contigs=9~137003-137377 CCDC144C PF14915.1 g5029.t1 - 0.00086 18.3 1.9 0.00088 18.2 1.3 1 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:173200-173804 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~173200-173804 CAF-1_p150 PF11600.3 g115417.t1 - 0.0071 15.7 40.5 0.0071 15.7 28 2 3 0 0 3 3 3 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:309129-310474 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~309129-310474 DUF3665 PF12427.3 g33541.t1 - 0.37 10.1 2.8 0.72 9.2 1.9 1.5 1 0 0 1 1 1 0 Branched-chain amino acid aminotransferase | Ref_seq=scaffold832_contigs=9, transcript_loc=scaffold832_contigs=9:20473-21527 Augustus predicted protein sequence Tobacco scaffold832_contigs=9~20473-21527 EzrA PF06160.7 g129519.t1 - 0.11 10.6 0.1 0.13 10.4 0 1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:6484-6804 Augustus predicted protein sequence Tobacco scaffold2972_contigs=1~6484-6804 DNA_gyraseA_C PF03989.8 g79528.t1 - 0.034 13.4 0.1 0.07 12.4 0 1.6 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller | Ref_seq=scaffold1696_contigs=1, transcript_loc=scaffold1696_contigs=1:51178-51479 Augustus predicted protein sequence Tobacco scaffold1696_contigs=1~51178-51479 DUF4283 PF14111.1 g107585.t1 - 0.000028 23.2 0 0.000039 22.7 0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold2404_contigs=8, transcript_loc=scaffold2404_contigs=8:22873-23184 Augustus predicted protein sequence Tobacco scaffold2404_contigs=8~22873-23184 CTF_NFI PF00859.13 g38327.t1 - 0.041 13.6 0.1 0.041 13.6 0.1 1.1 1 0 0 1 1 1 0 CTF/NF-I family transcription modulation region | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:379062-380797 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~379062-380797 AraC_binding PF02311.14 g106353.t1 - 0.11 12.1 0 0.14 11.8 0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:19681-22163 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~19681-22163 zf-CCHC PF00098.18 g6178.t1 - 0.023 14.6 2.6 0.023 14.6 1.8 1.7 2 0 0 2 2 2 0 Zinc knuckle | Ref_seq=scaffold293_contigs=5, transcript_loc=scaffold293_contigs=5:189960-190831 Augustus predicted protein sequence Tobacco scaffold293_contigs=5~189960-190831 YwhD PF08741.5 g44642.t1 - 0.043 13.2 0.1 2.7 7.3 0 2 1 1 1 2 2 2 0 YwhD family | Ref_seq=scaffold1038_contigs=3, transcript_loc=scaffold1038_contigs=3:62620-64230 Augustus predicted protein sequence Tobacco scaffold1038_contigs=3~62620-64230 MHCassoc_trimer PF08831.5 g50874.t1 - 0.44 10.4 2.1 0.61 9.9 1.2 1.5 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:378190-378510 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~378190-378510 DUF3020 PF11223.3 g48050.t1 - 0.57 10.6 5 1.2 9.5 3.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3020) | Ref_seq=scaffold1104_contigs=13, transcript_loc=scaffold1104_contigs=13:27967-29119 Augustus predicted protein sequence Tobacco scaffold1104_contigs=13~27967-29119 Adaptin_binding PF10199.4 g112943.t1 - 0.19 11.9 9.9 0.45 10.7 6.8 1.6 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold2618_contigs=26, transcript_loc=scaffold2618_contigs=26:944009-944797 Augustus predicted protein sequence Tobacco scaffold2618_contigs=26~944009-944797 REV PF00424.13 g132.t1 - 0.0086 15.9 5.3 0.016 15 3.7 1.4 1 0 0 1 1 1 1 REV protein (anti-repression trans-activator protein) | Ref_seq=scaffold6_contigs=8, transcript_loc=scaffold6_contigs=8:148275-149552 Augustus predicted protein sequence Tobacco scaffold6_contigs=8~148275-149552 DUF3549 PF12069.3 g68503.t1 - 0.053 12.2 0.5 0.058 12.1 0.4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3549) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:255896-256404 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~255896-256404 NR_Repeat PF14046.1 g49251.t1 - 0.37 10.5 2.7 0.28 10.9 0.9 1.5 2 0 0 2 2 2 0 Nuclear receptor repeat | Ref_seq=scaffold1116_contigs=2, transcript_loc=scaffold1116_contigs=2:138380-138712 Augustus predicted protein sequence Tobacco scaffold1116_contigs=2~138380-138712 DUF4283 PF14111.1 g72211.t1 - 0.0000058 25.4 0 0.0000073 25.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4283) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:519733-520338 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~519733-520338 ATG27 PF09451.5 g34771.t1 - 0.054 12.7 0 0.1 11.7 0 1.3 1 0 0 1 1 1 0 Autophagy-related protein 27 | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:269247-270860 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~269247-270860 MGAT2 PF05060.9 g100681.t1 - 0.0067 15.3 0 0.0071 15.3 0 1.1 1 0 0 1 1 1 1 N-acetylglucosaminyltransferase II (MGAT2) | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:236069-236425 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~236069-236425 Hyd_WA PF06462.7 g36336.t1 - 0.28 10.8 2.2 2.9 7.6 0 2.9 3 0 0 3 3 3 0 Propeller | Ref_seq=scaffold884_contigs=5, transcript_loc=scaffold884_contigs=5:41852-42340 Augustus predicted protein sequence Tobacco scaffold884_contigs=5~41852-42340 DUF2457 PF10446.4 g48684.t1 - 0.013 14.2 6.3 0.017 13.8 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:144432-145364 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~144432-145364 Filament PF00038.16 g5728.t1 - 0.0045 16.4 4.7 0.0069 15.8 3.3 1.3 1 0 0 1 1 1 1 Intermediate filament protein | Ref_seq=scaffold281_contigs=6, transcript_loc=scaffold281_contigs=6:323873-324517 Augustus predicted protein sequence Tobacco scaffold281_contigs=6~323873-324517 ODV-E18 PF10717.4 g12534.t1 - 0.038 13.4 3 0.1 12 2.1 1.7 1 1 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:124099-124383 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~124099-124383 DUF3722 PF12519.3 g19992.t1 - 0.13 11.4 0 0.16 11.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3722) | Ref_seq=scaffold576_contigs=15, transcript_loc=scaffold576_contigs=15:236384-236864 Augustus predicted protein sequence Tobacco scaffold576_contigs=15~236384-236864 DUF3353 PF11833.3 g119943.t1 - 0.049 13 0 0.055 12.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:79783-80067 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~79783-80067 FAM176 PF14851.1 g84067.t1 - 0.22 11.2 1.3 0.28 10.8 0.9 1.2 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1810_contigs=37, transcript_loc=scaffold1810_contigs=37:556474-556809 Augustus predicted protein sequence Tobacco scaffold1810_contigs=37~556474-556809 Sigma70_r3 PF04539.11 g72640.t1 - 0.006 16.4 0 1 9.3 0 2.1 2 0 0 2 2 2 2 Sigma-70 region 3 | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:296094-296468 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~296094-296468 PP-binding PF00550.20 g41728.t1 - 0.04 14.1 0.1 0.08 13.2 0.1 1.4 1 0 0 1 1 1 0 Phosphopantetheine attachment site | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:74269-74562 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~74269-74562 DMPK_coil PF08826.5 g76701.t1 - 0.068 13 3.7 0.18 11.7 2.6 1.7 1 0 0 1 1 1 0 DMPK coiled coil domain like | Ref_seq=scaffold1619_contigs=7, transcript_loc=scaffold1619_contigs=7:29105-29724 Augustus predicted protein sequence Tobacco scaffold1619_contigs=7~29105-29724 O-FucT PF10250.4 g3381.t1 - 0.26 10.3 1.9 0.4 9.7 0 2.1 3 0 0 3 3 3 0 GDP-fucose protein O-fucosyltransferase | Ref_seq=scaffold231_contigs=3, transcript_loc=scaffold231_contigs=3:93951-95354 Augustus predicted protein sequence Tobacco scaffold231_contigs=3~93951-95354 GARS_A PF01071.14 g20126.t1 - 0.11 11.9 0.1 0.22 11 0.1 1.5 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:156749-157459 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~156749-157459 DUF1694 PF07997.6 g117492.t1 - 0.0088 15.9 1.3 3.8 7.4 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1694) | Ref_seq=scaffold2686_contigs=11, transcript_loc=scaffold2686_contigs=11:66883-72419 Augustus predicted protein sequence Tobacco scaffold2686_contigs=11~66883-72419 DDHD PF02862.12 g115589.t1 - 0.015 15.1 10.6 0.016 15 7.3 1.1 1 0 0 1 1 1 0 DDHD domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:704391-705008 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~704391-705008 14-3-3 PF00244.15 g17285.t1 - 0.039 13 0 0.049 12.7 0 1.1 1 0 0 1 1 1 0 14-3-3 protein | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:16447-17017 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~16447-17017 MG1 PF11974.3 g93039.t1 - 0.069 13.7 0.1 0.078 13.5 0 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:549954-550478 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~549954-550478 Arabinose_bd PF12625.2 g103171.t1 - 0.025 14.3 0 0.027 14.3 0 1.1 1 0 0 1 1 1 0 Arabinose-binding domain of AraC transcription regulator, N-term | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:70375-70671 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~70375-70671 DUF2290 PF10053.4 g119980.t1 - 0.0064 15.8 0 0.017 14.4 0 1.6 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2290) | Ref_seq=scaffold2719_contigs=8, transcript_loc=scaffold2719_contigs=8:182148-183091 Augustus predicted protein sequence Tobacco scaffold2719_contigs=8~182148-183091 DnaI_N PF07319.6 g69678.t1 - 0.042 14 0 0.062 13.5 0 1.3 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:883647-884024 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~883647-884024 Enkurin PF13864.1 g97122.t1 - 0.012 15.8 1.2 0.018 15.2 0.8 1.3 1 0 0 1 1 1 0 Calmodulin-binding | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:17364-17744 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~17364-17744 DUF1398 PF07166.6 g40510.t1 - 0.1 12.5 0.1 21 5 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:39183-40778 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~39183-40778 ATHILA PF03078.10 g15484.t1 - 0.012 14.1 0 0.013 14.1 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:451633-451956 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~451633-451956 SIMPL PF04402.9 g75454.t1 - 0.036 13.9 0 0.036 13.9 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) | Ref_seq=scaffold1569_contigs=5, transcript_loc=scaffold1569_contigs=5:424208-424685 Augustus predicted protein sequence Tobacco scaffold1569_contigs=5~424208-424685 Dimer_Tnp_hAT PF05699.9 g102023.t1 - 0.011 15.3 0.2 0.018 14.6 0.1 1.4 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold2227_contigs=6, transcript_loc=scaffold2227_contigs=6:42-1351 Augustus predicted protein sequence Tobacco scaffold2227_contigs=6~42-1351 DUF1463 PF07316.6 g71464.t1 - 0.1 12.2 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1463) | Ref_seq=scaffold1501_contigs=1, transcript_loc=scaffold1501_contigs=1:82872-83260 Augustus predicted protein sequence Tobacco scaffold1501_contigs=1~82872-83260 QLQ PF08880.6 g56766.t1 - 0.15 11.4 0.5 0.41 10.1 0.1 1.9 1 1 1 2 2 2 0 QLQ | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:791948-792196 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~791948-792196 MtaB PF12176.3 g21663.t1 - 0.41 9 2.7 0.44 8.9 1.9 1.1 1 0 0 1 1 1 0 Methanol-cobalamin methyltransferase B subunit | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:301338-301598 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~301338-301598 Axin_b-cat_bind PF08833.5 g119681.t1 - 0.086 12.5 0.9 0.15 11.7 0.6 1.4 1 0 0 1 1 1 0 Axin beta-catenin binding domain | Ref_seq=scaffold2715_contigs=7, transcript_loc=scaffold2715_contigs=7:237821-238048 Augustus predicted protein sequence Tobacco scaffold2715_contigs=7~237821-238048 DUF4398 PF14346.1 g70155.t1 - 0.38 10.8 10.3 0.5 10.4 7.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:342701-343113 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~342701-343113 zf-CCHC PF00098.18 g54868.t1 - 0.0084 15.9 5.1 0.0084 15.9 3.5 2.8 3 0 0 3 3 3 2 Zinc knuckle | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:40442-40690 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~40442-40690 DUF2042 PF09743.4 g128962.t1 - 0.15 11.3 0 0.17 11.1 0 1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) | Ref_seq=scaffold2903_contigs=1, transcript_loc=scaffold2903_contigs=1:25746-25997 Augustus predicted protein sequence Tobacco scaffold2903_contigs=1~25746-25997 RVT_3 PF13456.1 g101865.t1 - 0.0018 18 0 0.002 17.8 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:67506-67832 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~67506-67832 DUF1015 PF06245.6 g12843.t1 - 0.015 13.8 0.1 0.016 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) | Ref_seq=scaffold434_contigs=1, transcript_loc=scaffold434_contigs=1:28132-28554 Augustus predicted protein sequence Tobacco scaffold434_contigs=1~28132-28554 RVT_3 PF13456.1 g93868.t1 - 0.0031 17.2 0 0.0051 16.5 0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:9382-10354 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~9382-10354 SVWC PF15430.1 g113524.t1 - 0.048 14 0.1 9 6.8 0 2.1 1 1 1 2 2 2 0 Single domain von Willebrand factor type C | Ref_seq=scaffold2635_contigs=10, transcript_loc=scaffold2635_contigs=10:7837-8358 Augustus predicted protein sequence Tobacco scaffold2635_contigs=10~7837-8358 7kD_coat PF02495.12 g95161.t1 - 0.037 13.4 0.1 0.083 12.3 0 1.7 2 0 0 2 2 2 0 7kD viral coat protein | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:214067-214399 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~214067-214399 APG17 PF04108.7 g85449.t1 - 0.0037 16.1 2.1 0.0046 15.7 1.4 1.1 1 0 0 1 1 1 1 Autophagy protein Apg17 | Ref_seq=scaffold1834_contigs=13, transcript_loc=scaffold1834_contigs=13:127579-128337 Augustus predicted protein sequence Tobacco scaffold1834_contigs=13~127579-128337 Phospholamban PF04272.9 g10320.t1 - 0.097 12.1 0 0.23 10.9 0 1.6 1 0 0 1 1 1 0 Phospholamban | Ref_seq=scaffold386_contigs=10, transcript_loc=scaffold386_contigs=10:74917-75627 Augustus predicted protein sequence Tobacco scaffold386_contigs=10~74917-75627 DUF3287 PF11690.3 g61272.t1 - 0.019 15 0.6 0.029 14.4 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:54804-55271 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~54804-55271 DUF1719 PF08224.6 g50651.t1 - 0.074 12.1 0.7 0.073 12.1 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:156182-156382 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~156182-156382 Sulfate_tra_GLY PF13792.1 g93759.t1 - 0.07 12.8 0.2 0.09 12.4 0.1 1.1 1 0 0 1 1 1 0 Sulfate transporter N-terminal domain with GLY motif | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:538999-539274 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~538999-539274 NAM-associated PF14303.1 g1062.t1 - 0.17 12.2 9.8 0.22 11.8 6.8 1.5 1 1 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold95_contigs=9, transcript_loc=scaffold95_contigs=9:205231-206068 Augustus predicted protein sequence Tobacco scaffold95_contigs=9~205231-206068 ATHILA PF03078.10 g12226.t1 - 0.096 11.2 0 0.1 11.1 0 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:361225-361578 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~361225-361578 DUF4565 PF15127.1 g20090.t1 - 0.059 13.7 0.1 0.061 13.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4565) | Ref_seq=scaffold578_contigs=5, transcript_loc=scaffold578_contigs=5:61087-61290 Augustus predicted protein sequence Tobacco scaffold578_contigs=5~61087-61290 Toxin_11 PF07473.6 g95520.t1 - 0.029 14.2 2.4 0.029 14.2 1.6 3 2 0 0 2 2 2 0 Spasmodic peptide gm9a | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:386633-387642 Augustus predicted protein sequence Tobacco scaffold2060_contigs=14~386633-387642 NESP55 PF06390.7 g59655.t1 - 0.75 9.1 3.4 0.87 8.9 1.5 1.7 1 1 1 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:35930-36363 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~35930-36363 DUF745 PF05335.8 g15268.t1 - 0.0085 15.6 8.6 0.016 14.7 6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF745) | Ref_seq=scaffold495_contigs=2, transcript_loc=scaffold495_contigs=2:25812-26669 Augustus predicted protein sequence Tobacco scaffold495_contigs=2~25812-26669 DUF2051 PF09738.4 g78813.t1 - 0.021 14.1 2.7 0.029 13.6 1.8 1.1 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) | Ref_seq=scaffold1674_contigs=9, transcript_loc=scaffold1674_contigs=9:15558-16308 Augustus predicted protein sequence Tobacco scaffold1674_contigs=9~15558-16308 NADHdh_A3 PF14987.1 g105396.t1 - 1.1 9.2 4 14 5.6 3.1 2.2 1 1 1 2 2 2 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 | Ref_seq=scaffold2354_contigs=18, transcript_loc=scaffold2354_contigs=18:588886-589278 Augustus predicted protein sequence Tobacco scaffold2354_contigs=18~588886-589278 Claudin_2 PF13903.1 g5089.t1 - 0.0097 15.6 0.1 0.012 15.3 0 1.1 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction | Ref_seq=scaffold270_contigs=10, transcript_loc=scaffold270_contigs=10:296932-297369 Augustus predicted protein sequence Tobacco scaffold270_contigs=10~296932-297369 ATP-synt_B PF00430.13 g445.t1 - 1.9 8.2 7.6 0.13 12 1 2.3 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:167562-168517 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~167562-168517 RVT_2 PF07727.9 g41738.t1 - 0.00088 18.3 0.3 0.0011 17.9 0.2 1.2 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:117111-117929 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~117111-117929 TMEM154 PF15102.1 g106570.t1 - 0.11 12.2 0.3 0.13 12 0.2 1.2 1 0 0 1 1 1 0 TMEM154 protein family | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:94739-96601 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~94739-96601 EF-hand_like PF09279.6 g88887.t1 - 0.011 15.7 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold1937_contigs=11, transcript_loc=scaffold1937_contigs=11:24346-24561 Augustus predicted protein sequence Tobacco scaffold1937_contigs=11~24346-24561 MscS_porin PF12795.2 g41241.t1 - 0.0062 15.8 0.7 0.0073 15.6 0.5 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain | Ref_seq=scaffold986_contigs=2, transcript_loc=scaffold986_contigs=2:5017-5568 Augustus predicted protein sequence Tobacco scaffold986_contigs=2~5017-5568 Phage_head_chap PF11113.3 g118775.t1 - 0.076 12.9 0.8 0.27 11.1 0.5 1.9 1 1 0 1 1 1 0 Head assembly gene product | Ref_seq=scaffold2706_contigs=4, transcript_loc=scaffold2706_contigs=4:65001-65267 Augustus predicted protein sequence Tobacco scaffold2706_contigs=4~65001-65267 SPASM PF13186.1 g26339.t1 - 0.051 13.9 0.1 0.07 13.4 0 1.2 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:129570-129833 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~129570-129833 Toprim_C_rpt PF13368.1 g28572.t1 - 9.9 6.7 9 16 6 6.2 1.4 1 0 0 1 1 1 0 Topoisomerase C-terminal repeat | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:214651-215255 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~214651-215255 Ribonuc_red_lgN PF00317.16 g95176.t1 - 0.054 13.2 0 6.2 6.6 0 2.3 2 0 0 2 2 2 0 Ribonucleotide reductase, all-alpha domain | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:284967-285900 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~284967-285900 Prenyltrans PF00432.16 g109833.t1 - 0.31 10.6 2.9 0.6 9.7 2 1.4 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:286676-287381 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~286676-287381 Remorin_N PF03766.8 g77022.t1 - 0.89 9.3 5.7 0.29 10.9 1.8 1.8 2 0 0 2 2 2 0 Remorin, N-terminal region | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:22970-23365 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~22970-23365 ATHILA PF03078.10 g77899.t1 - 0.00000019 30 0.2 0.000029 22.8 0.2 2 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:11575-12066 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~11575-12066 TMEM171 PF15471.1 g119872.t1 - 0.31 9.7 1.1 0.46 9.2 0.8 1.3 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:406828-408150 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~406828-408150 YjcZ PF13990.1 g4059.t1 - 0.065 12.3 0 0.073 12.1 0 1 1 0 0 1 1 1 0 YjcZ-like protein | Ref_seq=scaffold249_contigs=5, transcript_loc=scaffold249_contigs=5:97444-97746 Augustus predicted protein sequence Tobacco scaffold249_contigs=5~97444-97746 HALZ PF02183.13 g16153.t1 - 0.011 15.3 0.6 0.028 14.1 0.4 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper | Ref_seq=scaffold509_contigs=2, transcript_loc=scaffold509_contigs=2:141292-142412 Augustus predicted protein sequence Tobacco scaffold509_contigs=2~141292-142412 Retrotrans_gag PF03732.12 g76338.t1 - 0.076 13 0 0.096 12.7 0 1.1 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:230785-231446 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~230785-231446 GSIII_N PF12437.3 g48846.t1 - 0.1 11.9 0.2 0.12 11.7 0.1 1.1 1 0 0 1 1 1 0 Glutamine synthetase type III N terminal | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:485809-486075 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~485809-486075 Med21 PF11221.3 g128958.t1 - 0.029 14.3 2.7 0.042 13.8 1.9 1.3 1 0 0 1 1 1 0 Subunit 21 of Mediator complex | Ref_seq=scaffold2903_contigs=1, transcript_loc=scaffold2903_contigs=1:16892-17491 Augustus predicted protein sequence Tobacco scaffold2903_contigs=1~16892-17491 DUF4355 PF14265.1 g72328.t1 - 0.016 15.1 4.6 0.017 15 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:801372-801680 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~801372-801680 Baculo_8kDa PF06096.6 g13446.t1 - 0.018 14.9 1.2 0.063 13.1 0.4 2 1 1 1 2 2 2 0 Baculoviridae 8.2 KDa protein | Ref_seq=scaffold448_contigs=2, transcript_loc=scaffold448_contigs=2:47451-47852 Augustus predicted protein sequence Tobacco scaffold448_contigs=2~47451-47852 CCDC14 PF15254.1 g75760.t1 - 0.058 11.7 0 0.063 11.6 0 1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 14 | Ref_seq=scaffold1593_contigs=11, transcript_loc=scaffold1593_contigs=11:16856-17155 Augustus predicted protein sequence Tobacco scaffold1593_contigs=11~16856-17155 HPP PF04982.8 g49939.t1 - 0.14 11.9 0.1 0.26 11.1 0 1.7 1 1 0 1 1 1 0 HPP family | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:420345-421122 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~420345-421122 RRM_5 PF13893.1 g40586.t1 - 0.11 12.3 0 0.27 11.1 0 1.7 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:24643-25002 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~24643-25002 DUF336 PF03928.9 g52524.t1 - 0.11 12.3 0.6 0.12 12.1 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF336) | Ref_seq=scaffold1180_contigs=1, transcript_loc=scaffold1180_contigs=1:29627-29887 Augustus predicted protein sequence Tobacco scaffold1180_contigs=1~29627-29887 zf-CCHC_4 PF14392.1 g51865.t1 - 0.19 11.4 1.8 0.31 10.7 1.2 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1171_contigs=2, transcript_loc=scaffold1171_contigs=2:3432-6946 Augustus predicted protein sequence Tobacco scaffold1171_contigs=2~3432-6946 Tachykinin PF02202.11 g125999.t1 - 0.31 10.8 0.1 0.31 10.8 0 2.6 3 0 0 3 3 3 0 Tachykinin family | Ref_seq=scaffold2785_contigs=1, transcript_loc=scaffold2785_contigs=1:47419-47667 Augustus predicted protein sequence Tobacco scaffold2785_contigs=1~47419-47667 Mastoparan_2 PF08251.6 g82005.t1 - 0.016 15.1 0 0.033 14.1 0 1.5 1 0 0 1 1 1 0 Mastoparan peptide | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:439989-440664 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~439989-440664 Ral PF11058.3 g90740.t1 - 0.14 11.5 0 0.19 11.1 0 1.1 1 0 0 1 1 1 0 Antirestriction protein Ral | Ref_seq=scaffold1963_contigs=41, transcript_loc=scaffold1963_contigs=41:1064283-1064796 Augustus predicted protein sequence Tobacco scaffold1963_contigs=41~1064283-1064796 DUF779 PF05610.6 g12764.t1 - 0.034 14.1 0 0.038 13.9 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF779) | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:433133-433570 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~433133-433570 SLR1-BP PF07333.7 g96837.t1 - 0.015 15.5 0.4 0.018 15.2 0.3 1.1 1 0 0 1 1 1 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2123_contigs=4, transcript_loc=scaffold2123_contigs=4:15446-16344 Augustus predicted protein sequence Tobacco scaffold2123_contigs=4~15446-16344 Dec-1 PF04624.9 g90306.t1 - 0.026 14.1 0.2 0.041 13.4 0.2 1.2 1 0 0 1 1 1 0 Dec-1 repeat | Ref_seq=scaffold1960_contigs=6, transcript_loc=scaffold1960_contigs=6:34937-35917 Augustus predicted protein sequence Tobacco scaffold1960_contigs=6~34937-35917 Myc_N PF01056.13 g9559.t1 - 0.0076 15.4 2.3 0.0095 15.1 1.6 1.1 1 0 0 1 1 1 1 Myc amino-terminal region | Ref_seq=scaffold375_contigs=9, transcript_loc=scaffold375_contigs=9:14263-15005 Augustus predicted protein sequence Tobacco scaffold375_contigs=9~14263-15005 Cas_Csy4 PF09618.5 g69334.t1 - 0.11 12.3 0.7 0.13 12 0.5 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy4) | Ref_seq=scaffold1486_contigs=6, transcript_loc=scaffold1486_contigs=6:3573-4303 Augustus predicted protein sequence Tobacco scaffold1486_contigs=6~3573-4303 PBP1_TM PF14812.1 g85243.t1 - 0.12 12.6 1.6 0.22 11.8 1.1 1.5 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:1-495 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~1-495 Endonuc_Holl PF10107.4 g124790.t1 - 0.0045 16.6 1.6 0.0049 16.5 1.1 1.1 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:153646-154311 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~153646-154311 Vir_act_alpha_C PF10400.4 g95997.t1 - 0.0081 16.5 5.1 0.26 11.6 0.2 2.4 2 0 0 2 2 2 2 Virulence activator alpha C-term | Ref_seq=scaffold2083_contigs=30, transcript_loc=scaffold2083_contigs=30:100113-101702 Augustus predicted protein sequence Tobacco scaffold2083_contigs=30~100113-101702 DUF4172 PF13776.1 g61509.t1 - 0.23 11.5 1.8 1.2 9.2 0 2.5 1 1 1 3 3 3 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1334_contigs=1, transcript_loc=scaffold1334_contigs=1:1344-2078 Augustus predicted protein sequence Tobacco scaffold1334_contigs=1~1344-2078 MecA_N PF05223.6 g80826.t1 - 0.02 14.9 0.9 1.6 8.8 0.1 2.2 1 1 1 2 2 2 0 NTF2-like N-terminal transpeptidase domain | Ref_seq=scaffold1721_contigs=4, transcript_loc=scaffold1721_contigs=4:122746-123180 Augustus predicted protein sequence Tobacco scaffold1721_contigs=4~122746-123180 Peptidase_C48 PF02902.14 g99254.t1 - 0.00088 18.9 0 0.00097 18.8 0 1.1 1 0 0 1 1 1 1 Ulp1 protease family, C-terminal catalytic domain | Ref_seq=scaffold2172_contigs=4, transcript_loc=scaffold2172_contigs=4:154337-154603 Augustus predicted protein sequence Tobacco scaffold2172_contigs=4~154337-154603 Syntaxin_2 PF14523.1 g109851.t1 - 0.02 14.9 0.2 0.025 14.5 0.1 1.1 1 0 0 1 1 1 0 Syntaxin-like protein | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:343124-343426 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~343124-343426 zf-4CXXC_R1 PF10497.4 g112222.t1 - 0.09 12.9 0.2 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:31325-31648 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~31325-31648 DUF2454 PF10521.4 g42606.t1 - 0.049 12.6 0 0.056 12.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2454) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:150339-152263 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~150339-152263 DUF4462 PF14692.1 g44735.t1 - 0.23 10.7 2 3.3 7 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4462) | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:178578-178853 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~178578-178853 Muted PF14942.1 g69964.t1 - 0.084 12.7 2.8 0.098 12.5 1.9 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:661876-662271 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~661876-662271 ArsD PF06953.6 g96338.t1 - 0.033 14.3 0 0.047 13.8 0 1.1 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:141883-142170 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~141883-142170 ATHILA PF03078.10 g36423.t1 - 0.000012 24.1 0 0.000078 21.4 0 1.8 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold888_contigs=4, transcript_loc=scaffold888_contigs=4:57192-57569 Augustus predicted protein sequence Tobacco scaffold888_contigs=4~57192-57569 DUF2219 PF09982.4 g130040.t1 - 0.00029 19.7 0.1 0.4 9.4 0 2.1 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2219) | Ref_seq=scaffold3349_contigs=1, transcript_loc=scaffold3349_contigs=1:2473-3374 Augustus predicted protein sequence Tobacco scaffold3349_contigs=1~2473-3374 CCDC92 PF14916.1 g109025.t1 - 0.52 9.9 0.1 0.52 9.9 0.1 2 3 0 0 3 3 3 0 Coiled-coil domain of unknown function | Ref_seq=scaffold2472_contigs=11, transcript_loc=scaffold2472_contigs=11:15929-16335 Augustus predicted protein sequence Tobacco scaffold2472_contigs=11~15929-16335 PRNT PF15174.1 g77610.t1 - 0.037 13.6 0.2 0.06 13 0.1 1.3 1 0 0 1 1 1 0 Prion-related protein testis-specific | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:135901-137572 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~135901-137572 Mito_fiss_reg PF05308.6 g127527.t1 - 0.33 10.2 3.5 0.46 9.8 2.4 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2828_contigs=1, transcript_loc=scaffold2828_contigs=1:52992-55193 Augustus predicted protein sequence Tobacco scaffold2828_contigs=1~52992-55193 Ovate PF04844.8 g79360.t1 - 0.076 12.8 0 0.13 12 0 1.4 1 0 0 1 1 1 0 Transcriptional repressor, ovate | Ref_seq=scaffold1690_contigs=25, transcript_loc=scaffold1690_contigs=25:601163-601429 Augustus predicted protein sequence Tobacco scaffold1690_contigs=25~601163-601429 GTPase_Cys_C PF12631.2 g127607.t1 - 0.081 13.3 0.3 0.14 12.6 0.2 1.4 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE | Ref_seq=scaffold2831_contigs=1, transcript_loc=scaffold2831_contigs=1:12680-13511 Augustus predicted protein sequence Tobacco scaffold2831_contigs=1~12680-13511 Transposase_28 PF04195.7 g8993.t1 - 0.0028 16.9 0.5 0.0032 16.7 0.3 1.1 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:11055-11435 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~11055-11435 PhageMin_Tail PF10145.4 g98866.t1 - 0.023 14.3 0 0.025 14.2 0 1 1 0 0 1 1 1 0 Phage-related minor tail protein | Ref_seq=scaffold2166_contigs=6, transcript_loc=scaffold2166_contigs=6:327249-327479 Augustus predicted protein sequence Tobacco scaffold2166_contigs=6~327249-327479 Fucose_iso_C PF02952.12 g28284.t1 - 0.036 13.5 0 0.053 13 0 1.2 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:115563-116048 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~115563-116048 BLOC1_2 PF10046.4 g121074.t1 - 0.026 14.6 0.4 4.4 7.4 0.2 2.6 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:321041-322286 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~321041-322286 DUF1347 PF07079.6 g63657.t1 - 0.1 10.7 0 0.11 10.7 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold1379_contigs=3, transcript_loc=scaffold1379_contigs=3:36043-36504 Augustus predicted protein sequence Tobacco scaffold1379_contigs=3~36043-36504 zf-CHCC PF10276.4 g7652.t1 - 0.14 12 0 14 5.5 0 2.2 2 0 0 2 2 2 0 Zinc-finger domain | Ref_seq=scaffold316_contigs=3, transcript_loc=scaffold316_contigs=3:37821-39217 Augustus predicted protein sequence Tobacco scaffold316_contigs=3~37821-39217 TMEM171 PF15471.1 g129793.t1 - 5.5 5.6 5.4 6.8 5.3 3.7 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 | Ref_seq=scaffold3064_contigs=1, transcript_loc=scaffold3064_contigs=1:4449-4982 Augustus predicted protein sequence Tobacco scaffold3064_contigs=1~4449-4982 Imm35 PF15581.1 g39479.t1 - 0.12 12.3 0.2 0.23 11.4 0.2 1.4 1 0 0 1 1 1 0 Immunity protein 35 | Ref_seq=scaffold957_contigs=5, transcript_loc=scaffold957_contigs=5:11652-12923 Augustus predicted protein sequence Tobacco scaffold957_contigs=5~11652-12923 TP53IP5 PF15331.1 g107018.t1 - 0.088 12.7 0.6 0.82 9.5 0 2 2 0 0 2 2 2 0 Cellular tumour antigen p53-inducible 5 | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:381233-381976 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~381233-381976 Pox_vIL-18BP PF05566.7 g6714.t1 - 0.11 12.4 0 2.8 7.9 0 2 1 1 1 2 2 2 0 Orthopoxvirus interleukin 18 binding protein | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:17755-20474 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~17755-20474 DUF4347 PF14252.1 g122940.t1 - 0.038 13.4 0 0.049 13.1 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4347) | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:209921-210837 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~209921-210837 CENP-F_leu_zip PF10473.4 g123250.t1 - 0.033 14 4.7 0.052 13.4 3.3 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:173576-174082 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~173576-174082 DUF1143 PF06608.6 g127033.t1 - 0.093 12.7 0 0.098 12.6 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1143) | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:14677-14952 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~14677-14952 Fringe PF02434.11 g116257.t1 - 0.031 13.4 0.4 4.1 6.5 0 2.1 1 1 1 2 2 2 0 Fringe-like | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:294003-295788 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~294003-295788 DUF641 PF04859.7 g104501.t1 - 0.0024 17.5 5.8 0.0024 17.5 4 1.6 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold2341_contigs=11, transcript_loc=scaffold2341_contigs=11:334730-335602 Augustus predicted protein sequence Tobacco scaffold2341_contigs=11~334730-335602 Pas_Saposin PF09016.5 g50812.t1 - 0.083 12.9 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Pas factor saposin fold | Ref_seq=scaffold1146_contigs=6, transcript_loc=scaffold1146_contigs=6:207893-208123 Augustus predicted protein sequence Tobacco scaffold1146_contigs=6~207893-208123 PilM_2 PF11104.3 g31638.t1 - 0.013 14.3 0.2 0.015 14.2 0.1 1.1 1 0 0 1 1 1 0 Type IV pilus assembly protein PilM; | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:6127-6462 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~6127-6462 DUF2694 PF10904.3 g26513.t1 - 0.021 14.8 0.1 0.037 14 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:211568-212103 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~211568-212103 FH2 PF02181.18 g62117.t1 - 0.057 12.2 0.3 0.078 11.8 0.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:14992-17111 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~14992-17111 DUF1015 PF06245.6 g2243.t1 - 0.036 12.5 0.2 0.038 12.4 0.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) | Ref_seq=scaffold204_contigs=2, transcript_loc=scaffold204_contigs=2:60995-61300 Augustus predicted protein sequence Tobacco scaffold204_contigs=2~60995-61300 Trypan_PARP PF05887.6 g49845.t1 - 1.7 8.4 17.8 3 7.6 12.3 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:239137-240003 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~239137-240003 DUF4250 PF14056.1 g114932.t1 - 0.024 14.3 0 0.062 13 0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) | Ref_seq=scaffold2656_contigs=23, transcript_loc=scaffold2656_contigs=23:398595-400264 Augustus predicted protein sequence Tobacco scaffold2656_contigs=23~398595-400264 RVP_2 PF08284.6 g64707.t1 - 0.0048 16.8 0 0.0061 16.4 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1389_contigs=6, transcript_loc=scaffold1389_contigs=6:310166-310432 Augustus predicted protein sequence Tobacco scaffold1389_contigs=6~310166-310432 RVT_3 PF13456.1 g124361.t1 - 0.07 12.9 0 0.1 12.3 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2042518-2042883 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2042518-2042883 DUF601 PF04642.7 g96971.t1 - 0.044 13.1 0.4 0.051 12.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF601 | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:203534-204303 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~203534-204303 ATHILA PF03078.10 g43964.t1 - 0.033 12.7 0 0.035 12.6 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:47593-47841 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~47593-47841 GBV-C_env PF12786.2 g3784.t1 - 0.13 10.6 0.1 0.15 10.4 0.1 1.1 1 0 0 1 1 1 0 GB virus C genotype envelope | Ref_seq=scaffold243_contigs=2, transcript_loc=scaffold243_contigs=2:7144-10420 Augustus predicted protein sequence Tobacco scaffold243_contigs=2~7144-10420 DUF1453 PF07301.6 g111899.t1 - 0.038 13.8 0 0.04 13.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) | Ref_seq=scaffold2597_contigs=14, transcript_loc=scaffold2597_contigs=14:52629-52889 Augustus predicted protein sequence Tobacco scaffold2597_contigs=14~52629-52889 WD40_alt PF14077.1 g38105.t1 - 0.038 13.6 0.2 0.099 12.2 0.2 1.7 1 0 0 1 1 1 0 Alternative WD40 repeat motif | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:202521-204385 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~202521-204385 Chitin_synth_1 PF01644.12 g80930.t1 - 0.15 11.8 0.2 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 Chitin synthase | Ref_seq=scaffold1722_contigs=6, transcript_loc=scaffold1722_contigs=6:96007-96672 Augustus predicted protein sequence Tobacco scaffold1722_contigs=6~96007-96672 ATHILA PF03078.10 g17204.t1 - 0.0000065 25 0 0.000013 24 0 1.5 2 0 0 2 2 2 1 ATHILA ORF-1 family | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:165276-166395 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~165276-166395 DUF2457 PF10446.4 g53200.t1 - 0.11 11.1 7 0.13 10.9 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold1185_contigs=5, transcript_loc=scaffold1185_contigs=5:162341-162877 Augustus predicted protein sequence Tobacco scaffold1185_contigs=5~162341-162877 Senescence_reg PF04520.8 g39790.t1 - 0.3 11.5 2.5 0.4 11.1 1.7 1.1 1 0 0 1 1 1 0 Senescence regulator | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:231624-232443 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~231624-232443 Staphylcoagulse PF04022.7 g87650.t1 - 0.019 14.3 0.6 0.038 13.3 0.4 1.4 1 0 0 1 1 1 0 Staphylocoagulase repeat | Ref_seq=scaffold1890_contigs=13, transcript_loc=scaffold1890_contigs=13:46387-47163 Augustus predicted protein sequence Tobacco scaffold1890_contigs=13~46387-47163 WRC PF08879.5 g102541.t1 - 0.027 14.1 0.1 0.039 13.6 0.1 1.3 1 0 0 1 1 1 0 WRC | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:33403-34667 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~33403-34667 Recep_L_domain PF01030.19 g50658.t1 - 0.13 12.2 0.1 0.18 11.7 0.1 1.2 1 0 0 1 1 1 0 Receptor L domain | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:191761-192814 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~191761-192814 Exc PF07825.6 g54628.t1 - 0.22 11.3 5 6.2 6.6 0.3 3 1 1 1 3 3 3 0 Excisionase-like protein | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:390946-392674 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~390946-392674 Beta_propel PF09826.4 g83187.t1 - 0.00073 18 0 0.72 8.1 0 2 2 0 0 2 2 2 2 Beta propeller domain | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:283943-284992 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~283943-284992 Chon_Sulph_att PF06566.6 g91100.t1 - 0.089 12.4 9.8 0.11 12.1 6.8 1 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:180720-181040 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~180720-181040 PSP1 PF04468.7 g87417.t1 - 0.11 12.4 0.3 0.16 11.9 0.2 1.2 1 0 0 1 1 1 0 PSP1 C-terminal conserved region | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:42087-42395 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~42087-42395 DUF1453 PF07301.6 g26290.t1 - 0.17 11.7 0 0.26 11.1 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) | Ref_seq=scaffold713_contigs=10, transcript_loc=scaffold713_contigs=10:326687-328737 Augustus predicted protein sequence Tobacco scaffold713_contigs=10~326687-328737 DUF3245 PF11595.3 g59550.t1 - 0.003 17.8 1.9 0.004 17.4 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3245) | Ref_seq=scaffold1293_contigs=3, transcript_loc=scaffold1293_contigs=3:28252-28755 Augustus predicted protein sequence Tobacco scaffold1293_contigs=3~28252-28755 DUF3552 PF12072.3 g95429.t1 - 0.011 14.9 1.2 0.011 14.9 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) | Ref_seq=scaffold2060_contigs=14, transcript_loc=scaffold2060_contigs=14:342-1241 Augustus predicted protein sequence Tobacco scaffold2060_contigs=14~342-1241 DUF4050 PF13259.1 g90450.t1 - 0.00021 21.2 0.2 0.0032 17.3 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4050) | Ref_seq=scaffold1962_contigs=17, transcript_loc=scaffold1962_contigs=17:633313-633660 Augustus predicted protein sequence Tobacco scaffold1962_contigs=17~633313-633660 DUF2215 PF10225.4 g86232.t1 - 0.00094 18.7 0.9 0.0013 18.2 0.6 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2215) | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:292183-293900 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~292183-293900 DUF2970 PF11174.3 g23954.t1 - 0.069 12.7 0.1 0.097 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) | Ref_seq=scaffold655_contigs=15, transcript_loc=scaffold655_contigs=15:305448-305714 Augustus predicted protein sequence Tobacco scaffold655_contigs=15~305448-305714 Shikimate_dh_N PF08501.6 g127712.t1 - 0.13 12.2 0 0.49 10.4 0 1.8 2 0 0 2 2 2 0 Shikimate dehydrogenase substrate binding domain | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:37583-38386 Augustus predicted protein sequence Tobacco scaffold2834_contigs=1~37583-38386 Retrotrans_gag PF03732.12 g56062.t1 - 0.052 13.6 0.1 0.08 13 0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein | Ref_seq=scaffold1240_contigs=6, transcript_loc=scaffold1240_contigs=6:5652-6345 Augustus predicted protein sequence Tobacco scaffold1240_contigs=6~5652-6345 GAS2 PF02187.12 g98927.t1 - 0.022 14.4 0 8.1 6.2 0 2.2 2 0 0 2 2 2 0 Growth-Arrest-Specific Protein 2 Domain | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:55119-55915 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~55119-55915 FH2 PF02181.18 g86320.t1 - 0.025 13.4 0.1 0.032 13.1 0.1 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold1844_contigs=20, transcript_loc=scaffold1844_contigs=20:40261-40707 Augustus predicted protein sequence Tobacco scaffold1844_contigs=20~40261-40707 Nucleoplasmin PF03066.10 g120650.t1 - 0.0081 15.6 1.1 0.0082 15.6 0.7 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold2726_contigs=2, transcript_loc=scaffold2726_contigs=2:50064-50508 Augustus predicted protein sequence Tobacco scaffold2726_contigs=2~50064-50508 HSBP1 PF06825.7 g91453.t1 - 0.066 12.8 5.2 0.45 10.1 3.6 2.1 1 1 0 1 1 1 0 Heat shock factor binding protein 1 | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:26464-28343 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~26464-28343 Med23 PF11573.3 g51345.t1 - 0.0066 13.8 0 0.0078 13.6 0 1 1 0 0 1 1 1 1 Mediator complex subunit 23 | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:85741-86217 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~85741-86217 ATHILA PF03078.10 g78470.t1 - 0.000019 23.4 0.6 0.031 12.8 0.1 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1649_contigs=4, transcript_loc=scaffold1649_contigs=4:5281-6265 Augustus predicted protein sequence Tobacco scaffold1649_contigs=4~5281-6265 DUF374 PF04028.8 g100139.t1 - 0.027 13.7 0.5 0.053 12.7 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF374) | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:154720-155280 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~154720-155280 SR-25 PF10500.4 g16348.t1 - 4.9 6.5 7.8 6.8 6 5.4 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold512_contigs=2, transcript_loc=scaffold512_contigs=2:114633-115040 Augustus predicted protein sequence Tobacco scaffold512_contigs=2~114633-115040 DUF4113 PF13438.1 g4890.t1 - 0.065 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4113) | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:161178-161396 Augustus predicted protein sequence Tobacco scaffold265_contigs=4~161178-161396 Borealin PF10512.4 g55948.t1 - 0.045 13.6 0.1 0.075 12.9 0.1 1.4 1 0 0 1 1 1 0 Cell division cycle-associated protein 8 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:199996-200538 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~199996-200538 DUF2320 PF10082.4 g130244.t1 - 0.028 13.1 0.1 0.028 13.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2320) | Ref_seq=scaffold3741_contigs=1, transcript_loc=scaffold3741_contigs=1:1-471 Augustus predicted protein sequence Tobacco scaffold3741_contigs=1~1-471 DUF1985 PF09331.6 g45.t1 - 0.00000026 30.5 0 0.00000028 30.4 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold2_contigs=1, transcript_loc=scaffold2_contigs=1:36622-36918 Augustus predicted protein sequence Tobacco scaffold2_contigs=1~36622-36918 ATHILA PF03078.10 g124830.t1 - 0.00000013 30.5 0 0.00000016 30.3 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:225543-225788 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~225543-225788 TraH_2 PF06871.6 g91995.t1 - 0.00091 18.7 0.8 0.0097 15.3 0.2 1.9 1 1 1 2 2 2 2 TraH_2 | Ref_seq=scaffold1981_contigs=8, transcript_loc=scaffold1981_contigs=8:370248-370664 Augustus predicted protein sequence Tobacco scaffold1981_contigs=8~370248-370664 SPOB_a PF14689.1 g26951.t1 - 0.074 12.6 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:588599-588886 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~588599-588886 DUF1349 PF07081.6 g110151.t1 - 0.2 10.9 0.6 0.35 10.1 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1349) | Ref_seq=scaffold2527_contigs=1, transcript_loc=scaffold2527_contigs=1:20988-21586 Augustus predicted protein sequence Tobacco scaffold2527_contigs=1~20988-21586 DUF3874 PF12990.2 g119025.t1 - 0.14 12.2 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknonw function from B. Theta Gene description (DUF3874) | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:806314-806706 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~806314-806706 RNA_bind PF08675.6 g78066.t1 - 0.0014 18.5 4.3 0.84 9.6 0.2 2.8 2 2 0 2 2 2 2 RNA binding domain | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:336740-338092 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~336740-338092 HEAT_2 PF13646.1 g68209.t1 - 0.11 12.7 0 0.12 12.6 0 1.1 1 0 0 1 1 1 0 HEAT repeats | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:360883-361582 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~360883-361582 Turandot PF07240.6 g17218.t1 - 0.068 12.6 0.3 2.2 7.8 0 2.1 1 1 1 2 2 2 0 Stress-inducible humoral factor Turandot | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:184666-187363 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~184666-187363 DUF2422 PF10337.4 g10844.t1 - 0.057 12.2 0.9 0.058 12.1 0.6 1 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:5971-6204 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~5971-6204 DUF585 PF04522.7 g120174.t1 - 0.031 13.6 0.1 0.097 12 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF585) | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:198243-199086 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~198243-199086 DUF3073 PF11273.3 g107067.t1 - 0.0089 16.5 0 0.023 15.2 0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3073) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:553736-554069 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~553736-554069 zf-CCHC_3 PF13917.1 g4187.t1 - 0.0051 16.5 0.1 0.022 14.5 0 1.9 1 1 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:57479-57721 Augustus predicted protein sequence Tobacco scaffold254_contigs=6~57479-57721 FYVE PF01363.16 g28639.t1 - 0.046 13.6 0.7 0.053 13.4 0.5 1.2 1 0 0 1 1 1 0 FYVE zinc finger | Ref_seq=scaffold750_contigs=7, transcript_loc=scaffold750_contigs=7:18903-19235 Augustus predicted protein sequence Tobacco scaffold750_contigs=7~18903-19235 CAP_N PF01213.14 g115777.t1 - 0.0014 17.9 3.4 0.0015 17.9 2.4 1.2 1 0 0 1 1 1 1 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2662_contigs=2, transcript_loc=scaffold2662_contigs=2:66423-66970 Augustus predicted protein sequence Tobacco scaffold2662_contigs=2~66423-66970 ApoC-I PF04691.7 g24769.t1 - 0.087 12.5 0 0.15 11.7 0 1.4 1 0 0 1 1 1 0 Apolipoprotein C-I (ApoC-1) | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:45667-46069 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~45667-46069 EF_assoc_2 PF08356.7 g5318.t1 - 0.16 11.7 0.1 0.22 11.3 0.1 1.2 1 0 0 1 1 1 0 EF hand associated | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:21965-22240 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~21965-22240 Rz1 PF06085.6 g106532.t1 - 0.077 12.4 0 0.16 11.3 0 1.6 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:17740-18566 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~17740-18566 FYDLN_acid PF09538.5 g94670.t1 - 0.09 13.3 17.1 0.1 13.1 11.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:269387-269677 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~269387-269677 PseudoU_synth_1 PF01416.15 g34714.t1 - 0.11 12.9 0 0.16 12.4 0 1.3 1 1 0 1 1 1 0 tRNA pseudouridine synthase | Ref_seq=scaffold859_contigs=6, transcript_loc=scaffold859_contigs=6:155339-156082 Augustus predicted protein sequence Tobacco scaffold859_contigs=6~155339-156082 DUF457 PF04307.9 g82103.t1 - 0.041 13.2 0.5 0.059 12.7 0.4 1.2 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:667445-668307 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~667445-668307 zf-C2H2_2 PF12756.2 g93046.t1 - 0.082 13 0.7 0.12 12.4 0.4 1.4 1 1 0 1 1 1 0 C2H2 type zinc-finger (2 copies) | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:571765-572091 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~571765-572091 DUF406 PF04175.7 g41937.t1 - 0.076 13.4 0 0.093 13.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF406) | Ref_seq=scaffold994_contigs=5, transcript_loc=scaffold994_contigs=5:279996-280815 Augustus predicted protein sequence Tobacco scaffold994_contigs=5~279996-280815 DDE_5 PF13546.1 g108671.t1 - 0.024 13.5 0.1 0.026 13.3 0 1 1 0 0 1 1 1 0 DDE superfamily endonuclease | Ref_seq=scaffold2444_contigs=49, transcript_loc=scaffold2444_contigs=49:1382900-1384587 Augustus predicted protein sequence Tobacco scaffold2444_contigs=49~1382900-1384587 gpUL132 PF11359.3 g61254.t1 - 0.05 12.9 0.1 0.054 12.8 0.1 1 1 0 0 1 1 1 0 Glycoprotein UL132 | Ref_seq=scaffold1330_contigs=13, transcript_loc=scaffold1330_contigs=13:28531-29357 Augustus predicted protein sequence Tobacco scaffold1330_contigs=13~28531-29357 Kinocilin PF15033.1 g42729.t1 - 0.0045 16.5 0 0.0052 16.2 0 1.1 1 0 0 1 1 1 1 Kinocilin protein | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:436635-436979 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~436635-436979 GET2 PF08690.5 g75621.t1 - 0.12 11.5 0.2 0.14 11.4 0.2 1 1 0 0 1 1 1 0 GET complex subunit GET2 | Ref_seq=scaffold1576_contigs=4, transcript_loc=scaffold1576_contigs=4:98675-98938 Augustus predicted protein sequence Tobacco scaffold1576_contigs=4~98675-98938 zf-CCHH PF10283.4 g114512.t1 - 0.038 13.8 0.5 0.065 13 0 1.6 2 0 0 2 2 2 0 Zinc-finger (CX5CX6HX5H) motif | Ref_seq=scaffold2650_contigs=9, transcript_loc=scaffold2650_contigs=9:267314-267529 Augustus predicted protein sequence Tobacco scaffold2650_contigs=9~267314-267529 PIR PF00399.14 g10495.t1 - 0.023 14 1.3 0.04 13.2 0.9 1.4 1 0 0 1 1 1 0 Yeast PIR protein repeat | Ref_seq=scaffold387_contigs=7, transcript_loc=scaffold387_contigs=7:135109-135528 Augustus predicted protein sequence Tobacco scaffold387_contigs=7~135109-135528 Baculo_PEP_C PF04513.7 g38357.t1 - 0.02 14.7 1 0.023 14.5 0.7 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold937_contigs=20, transcript_loc=scaffold937_contigs=20:59959-60267 Augustus predicted protein sequence Tobacco scaffold937_contigs=20~59959-60267 SpoVR PF04293.8 g123086.t1 - 0.041 12.2 0 0.064 11.6 0 1.3 1 0 0 1 1 1 0 SpoVR like protein | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:155983-156566 Augustus predicted protein sequence Tobacco scaffold2753_contigs=11~155983-156566 ALIX_LYPXL_bnd PF13949.1 g57578.t1 - 0.0044 16 0.2 0.0062 15.5 0.2 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV | Ref_seq=scaffold1252_contigs=16, transcript_loc=scaffold1252_contigs=16:190879-191787 Augustus predicted protein sequence Tobacco scaffold1252_contigs=16~190879-191787 DUF641 PF04859.7 g129741.t1 - 0.015 15 2.8 0.031 14 1.9 1.6 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) | Ref_seq=scaffold3044_contigs=1, transcript_loc=scaffold3044_contigs=1:1-1254 Augustus predicted protein sequence Tobacco scaffold3044_contigs=1~1-1254 Sugarporin_N PF11471.3 g63142.t1 - 0.029 14 1.7 0.035 13.7 0.7 1.6 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension | Ref_seq=scaffold1368_contigs=16, transcript_loc=scaffold1368_contigs=16:69385-69648 Augustus predicted protein sequence Tobacco scaffold1368_contigs=16~69385-69648 UPF0240 PF06784.6 g77462.t1 - 0.00044 19.9 0.6 4.7 6.8 0 3.2 1 1 1 3 3 3 3 Uncharacterised protein family (UPF0240) | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:125762-127085 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~125762-127085 DUF3511 PF12023.3 g46183.t1 - 0.0076 15.5 0 0.0099 15.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3511) | Ref_seq=scaffold1057_contigs=2, transcript_loc=scaffold1057_contigs=2:1204-1467 Augustus predicted protein sequence Tobacco scaffold1057_contigs=2~1204-1467 RNase_H2-Ydr279 PF09468.5 g117758.t1 - 0.017 14.3 2.4 0.015 14.5 1.6 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2694_contigs=28, transcript_loc=scaffold2694_contigs=28:16465-17228 Augustus predicted protein sequence Tobacco scaffold2694_contigs=28~16465-17228 DBD_Tnp_Mut PF03108.10 g27042.t1 - 0.000000013 34.2 0 0.000000018 33.8 0 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:789693-790556 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~789693-790556 RolB_RolC PF02027.12 g124817.t1 - 0.014 14.6 0 0.014 14.5 0 1.2 1 0 0 1 1 1 0 RolB/RolC glucosidase family | Ref_seq=scaffold2764_contigs=1, transcript_loc=scaffold2764_contigs=1:208668-209578 Augustus predicted protein sequence Tobacco scaffold2764_contigs=1~208668-209578 DUF4656 PF15551.1 g69629.t1 - 0.11 11.6 0 0.11 11.6 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF4656) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:665623-665856 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~665623-665856 Delta_lysin PF05372.6 g104876.t1 - 0.078 12.3 0.4 0.12 11.7 0.3 1.2 1 0 0 1 1 1 0 Delta lysin family | Ref_seq=scaffold2345_contigs=7, transcript_loc=scaffold2345_contigs=7:245784-246059 Augustus predicted protein sequence Tobacco scaffold2345_contigs=7~245784-246059 Dicty_CAD PF05720.7 g83833.t1 - 0.002 17.7 0 0.0034 17 0 1.3 1 0 0 1 1 1 1 Cell-cell adhesion domain | Ref_seq=scaffold1806_contigs=1, transcript_loc=scaffold1806_contigs=1:10678-11142 Augustus predicted protein sequence Tobacco scaffold1806_contigs=1~10678-11142 AAA_27 PF13514.1 g45640.t1 - 0.00085 17.1 5 0.00098 16.9 3.4 1.1 1 0 0 1 1 1 1 AAA domain | Ref_seq=scaffold1046_contigs=4, transcript_loc=scaffold1046_contigs=4:269202-269765 Augustus predicted protein sequence Tobacco scaffold1046_contigs=4~269202-269765 DUF4486 PF14858.1 g77604.t1 - 0.0053 15 0 0.0053 15 0 1 1 0 0 1 1 1 1 Domain of unknown function (DUF4486) | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:90129-91943 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~90129-91943 Peptidase_M57 PF12388.3 g123544.t1 - 0.12 11.7 0 0.13 11.5 0 1 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:133831-134094 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~133831-134094 Remorin_N PF03766.8 g98377.t1 - 0.042 13.6 1 0.071 12.8 0.7 1.3 1 0 0 1 1 1 0 Remorin, N-terminal region | Ref_seq=scaffold2160_contigs=6, transcript_loc=scaffold2160_contigs=6:34475-34940 Augustus predicted protein sequence Tobacco scaffold2160_contigs=6~34475-34940 DUF4211 PF13926.1 g46499.t1 - 0.088 12.2 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) | Ref_seq=scaffold1070_contigs=2, transcript_loc=scaffold1070_contigs=2:26853-27095 Augustus predicted protein sequence Tobacco scaffold1070_contigs=2~26853-27095 Baculo_PEP_C PF04513.7 g46097.t1 - 0.0014 18.4 0.8 0.29 10.9 0.4 2.2 2 0 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold1055_contigs=9, transcript_loc=scaffold1055_contigs=9:73736-74521 Augustus predicted protein sequence Tobacco scaffold1055_contigs=9~73736-74521 DUF1183 PF06682.7 g94082.t1 - 0.087 12.4 0.1 0.093 12.3 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) | Ref_seq=scaffold2035_contigs=8, transcript_loc=scaffold2035_contigs=8:207849-208121 Augustus predicted protein sequence Tobacco scaffold2035_contigs=8~207849-208121 UBN2 PF14223.1 g114615.t1 - 0.02 14.6 0.8 0.033 13.9 0.5 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:57349-57816 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~57349-57816 zf-CCHC_3 PF13917.1 g44093.t1 - 0.026 14.2 0.2 0.042 13.5 0.1 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:8954-9386 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~8954-9386 VGCC_beta4Aa_N PF12052.3 g34339.t1 - 0.00046 19.9 4.2 0.24 11.3 0.1 2.4 2 0 0 2 2 2 2 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold850_contigs=10, transcript_loc=scaffold850_contigs=10:22262-23602 Augustus predicted protein sequence Tobacco scaffold850_contigs=10~22262-23602 ATHILA PF03078.10 g115769.t1 - 0.031 12.8 0 0.034 12.7 0 1 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2662_contigs=2, transcript_loc=scaffold2662_contigs=2:59818-60165 Augustus predicted protein sequence Tobacco scaffold2662_contigs=2~59818-60165 Gln-synt_N PF03951.14 g22192.t1 - 0.084 12.4 3.7 3.4 7.3 1.2 2.9 1 1 1 2 2 2 0 Glutamine synthetase, beta-Grasp domain | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:177222-177455 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~177222-177455 ATHILA PF03078.10 g124033.t1 - 0.00027 19.6 0 0.00027 19.6 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1202056-1202887 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1202056-1202887 TRAPPC-Trs85 PF12739.2 g28941.t1 - 0.064 11.8 0.4 0.072 11.7 0.3 1 1 0 0 1 1 1 0 ER-Golgi trafficking TRAPP I complex 85 kDa subunit | Ref_seq=scaffold752_contigs=5, transcript_loc=scaffold752_contigs=5:58909-59199 Augustus predicted protein sequence Tobacco scaffold752_contigs=5~58909-59199 DUF1489 PF07370.6 g71909.t1 - 0.011 15.2 0 0.011 15.2 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1489) | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:93864-94070 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~93864-94070 ATHILA PF03078.10 g11326.t1 - 0.00028 19.5 5.4 0.0031 16.1 0.5 2.3 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold405_contigs=10, transcript_loc=scaffold405_contigs=10:199679-200635 Augustus predicted protein sequence Tobacco scaffold405_contigs=10~199679-200635 Dimer_Tnp_hAT PF05699.9 g16058.t1 - 0.00019 20.9 0 0.00025 20.6 0 1.3 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:188093-188392 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~188093-188392 DUF4321 PF14209.1 g71658.t1 - 0.098 12.3 0.1 0.79 9.4 0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4321) | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:231660-232028 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~231660-232028 DUF1447 PF07288.6 g63721.t1 - 0.049 13.4 0.1 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1447) | Ref_seq=scaffold1380_contigs=8, transcript_loc=scaffold1380_contigs=8:173401-173826 Augustus predicted protein sequence Tobacco scaffold1380_contigs=8~173401-173826 DegT_DnrJ_EryC1 PF01041.12 g4884.t1 - 0.071 12.1 0 0.097 11.6 0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:139376-141160 Augustus predicted protein sequence Tobacco scaffold265_contigs=4~139376-141160 ICAP-1_inte_bdg PF10480.4 g117006.t1 - 0.059 13.1 1.5 0.066 12.9 1.1 1 1 0 0 1 1 1 0 Beta-1 integrin binding protein | Ref_seq=scaffold2679_contigs=24, transcript_loc=scaffold2679_contigs=24:392137-392391 Augustus predicted protein sequence Tobacco scaffold2679_contigs=24~392137-392391 Clathrin PF00637.15 g38519.t1 - 0.018 14.6 0.1 0.021 14.4 0.1 1.2 1 0 0 1 1 1 0 Region in Clathrin and VPS | Ref_seq=scaffold941_contigs=6, transcript_loc=scaffold941_contigs=6:129201-129621 Augustus predicted protein sequence Tobacco scaffold941_contigs=6~129201-129621 Histone_HNS PF00816.16 g40322.t1 - 0.56 10.7 2.7 46 4.6 0 2.2 2 0 0 2 2 2 0 H-NS histone family | Ref_seq=scaffold974_contigs=15, transcript_loc=scaffold974_contigs=15:116161-117981 Augustus predicted protein sequence Tobacco scaffold974_contigs=15~116161-117981 HTH_36 PF13730.1 g96283.t1 - 0.11 12.6 0 0.67 10.1 0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold2099_contigs=9, transcript_loc=scaffold2099_contigs=9:4253-4612 Augustus predicted protein sequence Tobacco scaffold2099_contigs=9~4253-4612 RVT_3 PF13456.1 g65545.t1 - 0.0022 17.7 0 0.004 16.8 0 1.5 1 1 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1419_contigs=9, transcript_loc=scaffold1419_contigs=9:56487-56894 Augustus predicted protein sequence Tobacco scaffold1419_contigs=9~56487-56894 Nop14 PF04147.7 g129085.t1 - 1.7 6.4 12.6 1.5 6.6 8.8 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:13456-13725 Augustus predicted protein sequence Tobacco scaffold2915_contigs=1~13456-13725 DUF4510 PF14971.1 g24757.t1 - 0.014 15.5 0.6 0.015 15.4 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4510) | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:36010-36318 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~36010-36318 CBM_19 PF03427.8 g92652.t1 - 0.0042 16.8 0.9 0.0042 16.8 0.6 1.9 2 0 0 2 2 2 1 Carbohydrate binding domain (family 19) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:234299-234553 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~234299-234553 Pox_A_type_inc PF04508.7 g80690.t1 - 0.0033 17 0.3 0.21 11.4 0.1 2.9 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:97148-97489 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~97148-97489 PriCT_1 PF08708.6 g40623.t1 - 0.055 13.2 0.6 3.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Primase C terminal 1 (PriCT-1) | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:171550-172050 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~171550-172050 NifQ PF04891.7 g63642.t1 - 0.44 10.6 2.3 0.56 10.3 1.6 1.3 1 0 0 1 1 1 0 NifQ | Ref_seq=scaffold1379_contigs=3, transcript_loc=scaffold1379_contigs=3:11498-11770 Augustus predicted protein sequence Tobacco scaffold1379_contigs=3~11498-11770 NAM-associated PF14303.1 g60033.t1 - 0.0067 16.7 5.9 0.0091 16.3 4.1 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1302_contigs=6, transcript_loc=scaffold1302_contigs=6:113927-114232 Augustus predicted protein sequence Tobacco scaffold1302_contigs=6~113927-114232 Myc_N PF01056.13 g64083.t1 - 0.036 13.2 0 0.051 12.7 0 1.2 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:304409-305068 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~304409-305068 RVT_3 PF13456.1 g121377.t1 - 0.00039 20.1 0.1 0.00051 19.7 0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:1035676-1035939 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~1035676-1035939 Arena_glycoprot PF00798.13 g53982.t1 - 0.053 11.9 3.3 0.061 11.7 2.3 1 1 0 0 1 1 1 0 Arenavirus glycoprotein | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:575049-575537 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~575049-575537 NAM-associated PF14303.1 g80561.t1 - 0.000081 22.9 0.2 0.00012 22.4 0.2 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1719_contigs=7, transcript_loc=scaffold1719_contigs=7:27369-27710 Augustus predicted protein sequence Tobacco scaffold1719_contigs=7~27369-27710 DUF3741 PF12552.3 g68955.t1 - 0.69 9.6 2.8 1.5 8.6 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3741) | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:196156-196404 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~196156-196404 DUF1938 PF09153.5 g39940.t1 - 0.13 12.1 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:14533-14922 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~14533-14922 Sensor PF13796.1 g119354.t1 - 0.49 9.9 3.7 0.59 9.7 2.5 1.1 1 0 0 1 1 1 0 Putative sensor | Ref_seq=scaffold2711_contigs=30, transcript_loc=scaffold2711_contigs=30:553613-553849 Augustus predicted protein sequence Tobacco scaffold2711_contigs=30~553613-553849 Benyvirus_14KDa PF07255.6 g106741.t1 - 0.06 13.2 0 0.066 13 0 1.1 1 0 0 1 1 1 0 Benyvirus 14KDa protein | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:503833-504057 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~503833-504057 DUF1985 PF09331.6 g28202.t1 - 0.00028 20.7 0 0.00057 19.7 0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:76657-77712 Augustus predicted protein sequence Tobacco scaffold742_contigs=5~76657-77712 Glyco_transf_29 PF00777.13 g74300.t1 - 0.018 14.2 0.2 0.022 13.9 0.1 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 29 (sialyltransferase) | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:150722-151063 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~150722-151063 Nodulin_late PF07127.6 g30445.t1 - 0.0022 18 1 0.0022 18 0.7 1.8 2 0 0 2 2 2 1 Late nodulin protein | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:829328-829907 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~829328-829907 Iron_traffic PF04362.9 g80514.t1 - 0.023 14.1 0 0.028 13.8 0 1.3 1 0 0 1 1 1 0 Bacterial Fe(2+) trafficking | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:183556-183852 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~183556-183852 Ribosomal_L15e PF00827.12 g124419.t1 - 0.0016 17.9 0.5 0.0016 17.9 0.4 1.4 2 0 0 2 2 2 1 Ribosomal L15 | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:2171778-2172185 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~2171778-2172185 CoA_binding_3 PF13727.1 g64787.t1 - 2.8 7.7 6.2 3.7 7.3 4.3 1.1 1 0 0 1 1 1 0 CoA-binding domain | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:174584-175295 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~174584-175295 MYT1 PF08474.6 g74019.t1 - 0.025 14 0.8 0.035 13.5 0.1 1.4 2 0 0 2 2 2 0 Myelin transcription factor 1 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:410705-411142 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~410705-411142 WWbp PF10349.4 g117203.t1 - 0.045 14.6 0.2 0.072 13.9 0.1 1.2 1 0 0 1 1 1 0 WW-domain ligand protein | Ref_seq=scaffold2682_contigs=6, transcript_loc=scaffold2682_contigs=6:139409-139939 Augustus predicted protein sequence Tobacco scaffold2682_contigs=6~139409-139939 ER-remodelling PF14755.1 g100595.t1 - 2.1 8.3 9.2 15 5.6 0 2.5 2 1 0 2 2 2 0 Intracellular membrane remodeller | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:37764-38650 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~37764-38650 Metal_CEHH PF14455.1 g36968.t1 - 0.085 12.2 0 0.22 10.8 0 1.6 2 0 0 2 2 2 0 Predicted metal binding domain | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:18841-19781 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~18841-19781 DNA_photolyase PF00875.13 g32591.t1 - 0.04 13.6 0 0.063 13 0 1.2 1 0 0 1 1 1 0 DNA photolyase | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:445187-447558 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~445187-447558 DUF4279 PF14106.1 g101974.t1 - 0.0064 16.3 0.1 0.0076 16.1 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4279) | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:221800-222120 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~221800-222120 CCDC50_N PF15295.1 g923.t1 - 0.076 12.9 0.5 0.087 12.7 0.3 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus | Ref_seq=scaffold66_contigs=5, transcript_loc=scaffold66_contigs=5:135617-135958 Augustus predicted protein sequence Tobacco scaffold66_contigs=5~135617-135958 zf-CHCC PF10276.4 g17648.t1 - 0.056 13.2 0 0.098 12.5 0 1.4 1 0 0 1 1 1 0 Zinc-finger domain | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:2581-3481 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~2581-3481 DUF2733 PF10813.3 g36181.t1 - 2.9 7.5 4.4 10 5.7 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2733) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:436872-437354 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~436872-437354 ATHILA PF03078.10 g59935.t1 - 0.000016 23.7 0 0.000019 23.4 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:217079-217684 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~217079-217684 DUF4201 PF13870.1 g64143.t1 - 0.0047 16.3 2.7 0.0047 16.3 1.9 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:12843-13774 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~12843-13774 VMA21 PF09446.5 g9690.t1 - 0.079 12.8 0.2 0.17 11.8 0.1 1.6 1 0 0 1 1 1 0 VMA21-like domain | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:96456-101025 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~96456-101025 RRM_DME PF15628.1 g102716.t1 - 0.0094 15.6 0.1 0.89 9.2 0 2.5 1 1 1 2 2 2 2 RRM in Demeter | Ref_seq=scaffold2263_contigs=12, transcript_loc=scaffold2263_contigs=12:117690-118979 Augustus predicted protein sequence Tobacco scaffold2263_contigs=12~117690-118979 Candida_ALS_N PF11766.3 g121083.t1 - 0.006 15.5 0 0.0084 15 0 1.2 1 0 0 1 1 1 1 Cell-wall agglutinin N-terminal ligand-sugar binding | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:331986-332552 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~331986-332552 UBN2 PF14223.1 g22697.t1 - 0.0065 16.2 0 0.0083 15.9 0 1.2 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold624_contigs=9, transcript_loc=scaffold624_contigs=9:138666-139177 Augustus predicted protein sequence Tobacco scaffold624_contigs=9~138666-139177 Dehydrin PF00257.14 g49583.t1 - 0.000022 24.8 31.7 0.00058 20.2 2.2 2.1 1 1 1 2 2 2 2 Dehydrin | Ref_seq=scaffold1127_contigs=3, transcript_loc=scaffold1127_contigs=3:21811-22288 Augustus predicted protein sequence Tobacco scaffold1127_contigs=3~21811-22288 CAF-1_p150 PF11600.3 g25031.t1 - 0.003 16.9 29.3 0.0035 16.7 20.3 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold685_contigs=4, transcript_loc=scaffold685_contigs=4:113879-114289 Augustus predicted protein sequence Tobacco scaffold685_contigs=4~113879-114289 Phage_GP20 PF06810.6 g35095.t1 - 0.043 13.2 11.5 1.9 7.9 8.4 2 1 1 0 1 1 1 0 Phage minor structural protein GP20 | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:28788-29351 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~28788-29351 Vir_act_alpha_C PF10400.4 g77978.t1 - 0.011 16.1 0.1 0.055 13.8 0 1.9 2 0 0 2 2 2 0 Virulence activator alpha C-term | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:145903-146253 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~145903-146253 PAT1 PF09770.4 g85694.t1 - 7.7 4.6 10.3 9 4.3 7.2 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:365503-366216 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~365503-366216 Perm-CXXC PF15629.1 g88368.t1 - 0.75 9.8 3.3 9.3 6.3 0.5 2.2 2 0 0 2 2 2 0 Permuted single zf-CXXC unit | Ref_seq=scaffold1926_contigs=8, transcript_loc=scaffold1926_contigs=8:91621-92090 Augustus predicted protein sequence Tobacco scaffold1926_contigs=8~91621-92090 Fer4_12 PF13353.1 g21634.t1 - 0.13 12.3 0.5 0.25 11.4 0.3 1.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:201492-202067 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~201492-202067 Jag_N PF14804.1 g45118.t1 - 0.11 12.4 0 26 4.9 0 2.5 2 0 0 2 2 2 0 Jag N-terminus | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:453183-454197 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~453183-454197 DUF3858 PF12970.2 g58596.t1 - 0.11 12.2 0 0.14 11.9 0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3858) | Ref_seq=scaffold1273_contigs=11, transcript_loc=scaffold1273_contigs=11:254675-255025 Augustus predicted protein sequence Tobacco scaffold1273_contigs=11~254675-255025 CHDCT2 PF08074.6 g17811.t1 - 0.04 13.6 0.3 0.052 13.2 0.2 1.2 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:274200-276702 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~274200-276702 DUF982 PF06169.7 g50966.t1 - 0.049 13.3 0.2 0.057 13.1 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF982) | Ref_seq=scaffold1148_contigs=4, transcript_loc=scaffold1148_contigs=4:112196-112438 Augustus predicted protein sequence Tobacco scaffold1148_contigs=4~112196-112438 zf-CCHC PF00098.18 g71564.t1 - 0.00057 19.6 1.4 0.001 18.9 0.9 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1502_contigs=2, transcript_loc=scaffold1502_contigs=2:38102-38464 Augustus predicted protein sequence Tobacco scaffold1502_contigs=2~38102-38464 Rubis-subs-bind PF09273.6 g43199.t1 - 0.036 13.9 0 0.05 13.5 0 1.3 1 0 0 1 1 1 0 Rubisco LSMT substrate-binding | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:90168-90476 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~90168-90476 Hum_adeno_E3A PF05393.6 g55069.t1 - 0.072 12.7 0 9.1 6 0 2.1 2 0 0 2 2 2 0 Human adenovirus early E3A glycoprotein | Ref_seq=scaffold1213_contigs=18, transcript_loc=scaffold1213_contigs=18:494485-494823 Augustus predicted protein sequence Tobacco scaffold1213_contigs=18~494485-494823 DUF1985 PF09331.6 g1883.t1 - 0.000000095 31.9 0 0.00000016 31.2 0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold195_contigs=3, transcript_loc=scaffold195_contigs=3:146313-148631 Augustus predicted protein sequence Tobacco scaffold195_contigs=3~146313-148631 DUF3966 PF13110.1 g14760.t1 - 0.064 13 0.1 0.17 11.7 0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3966) | Ref_seq=scaffold481_contigs=9, transcript_loc=scaffold481_contigs=9:135418-135672 Augustus predicted protein sequence Tobacco scaffold481_contigs=9~135418-135672 LRR_5 PF13306.1 g36155.t1 - 0.11 12.1 0 0.13 11.9 0 1.1 1 0 0 1 1 1 0 Leucine rich repeats (6 copies) | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:394655-394879 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~394655-394879 zf-CCHC PF00098.18 g82077.t1 - 0.00011 21.9 0.7 0.00023 20.9 0.5 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:625342-626547 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~625342-626547 Ustilago_mating PF05722.7 g21407.t1 - 0.2 10.9 1.7 0.21 10.8 1.2 1.1 1 0 0 1 1 1 0 Ustilago B locus mating-type protein | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:370102-370365 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~370102-370365 DUF2959 PF11172.3 g62284.t1 - 0.012 15.3 2.2 0.017 14.9 1.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:346829-347502 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~346829-347502 SMP_2 PF10144.4 g84342.t1 - 0.012 14.7 0 0.012 14.7 0 1 1 0 0 1 1 1 0 Bacterial virulence factor haemolysin | Ref_seq=scaffold1819_contigs=5, transcript_loc=scaffold1819_contigs=5:109652-110192 Augustus predicted protein sequence Tobacco scaffold1819_contigs=5~109652-110192 Nucleoplasmin PF03066.10 g97128.t1 - 0.00062 19.3 2.1 0.00062 19.3 1.4 1.1 1 0 0 1 1 1 1 Nucleoplasmin | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:29542-29805 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~29542-29805 Tox-REase-5 PF15648.1 g53577.t1 - 0.066 13.4 0 7 7 0 2.2 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 5 | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:125979-128184 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~125979-128184 Myb_DNA-bind_4 PF13837.1 g110560.t1 - 0.009 16.1 0.9 3.7 7.7 0.1 2.4 2 0 0 2 2 2 2 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold2564_contigs=13, transcript_loc=scaffold2564_contigs=13:88471-90021 Augustus predicted protein sequence Tobacco scaffold2564_contigs=13~88471-90021 GETHR PF05671.6 g10862.t1 - 5.9 6.1 6.2 25 4.1 0.1 3.2 3 0 0 3 3 3 0 GETHR pentapeptide repeat (5 copies) | Ref_seq=scaffold395_contigs=7, transcript_loc=scaffold395_contigs=7:41001-41681 Augustus predicted protein sequence Tobacco scaffold395_contigs=7~41001-41681 7TM_GPCR_Srv PF10323.4 g87611.t1 - 0.042 12.9 0.1 0.048 12.7 0.1 1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srv | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:117290-117550 Augustus predicted protein sequence Tobacco scaffold1886_contigs=2~117290-117550 IFT43 PF15305.1 g97630.t1 - 0.039 13.9 0.6 0.046 13.7 0.4 1.2 1 0 0 1 1 1 0 Intraflagellar transport protein 43 | Ref_seq=scaffold2141_contigs=2, transcript_loc=scaffold2141_contigs=2:841-1275 Augustus predicted protein sequence Tobacco scaffold2141_contigs=2~841-1275 Dioxygenase_C PF00775.16 g3007.t1 - 0.07 12.3 0 0.071 12.3 0 1.1 1 0 0 1 1 1 0 Dioxygenase | Ref_seq=scaffold223_contigs=4, transcript_loc=scaffold223_contigs=4:102306-102687 Augustus predicted protein sequence Tobacco scaffold223_contigs=4~102306-102687 LPP20 PF02169.11 g27135.t1 - 0.084 12.9 0 0.12 12.5 0 1.2 1 0 0 1 1 1 0 LPP20 lipoprotein | Ref_seq=scaffold721_contigs=12, transcript_loc=scaffold721_contigs=12:249132-249398 Augustus predicted protein sequence Tobacco scaffold721_contigs=12~249132-249398 TSNR_N PF04705.7 g30115.t1 - 0.028 14.2 0 0.039 13.7 0 1.2 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:483929-484965 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~483929-484965 DUF4048 PF13257.1 g78662.t1 - 0.089 12.4 0 0.095 12.3 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4048) | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:27252-28044 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~27252-28044 DUF2960 PF11173.3 g26421.t1 - 0.028 14.7 0.3 0.055 13.7 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2960) | Ref_seq=scaffold715_contigs=2, transcript_loc=scaffold715_contigs=2:36230-37882 Augustus predicted protein sequence Tobacco scaffold715_contigs=2~36230-37882 p47_phox_C PF08944.6 g103793.t1 - 0.19 11.9 2.3 0.36 11 1.6 1.4 1 0 0 1 1 1 0 NADPH oxidase subunit p47Phox, C terminal domain | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:56519-56896 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~56519-56896 Myb_DNA-bind_4 PF13837.1 g28582.t1 - 0.0015 18.6 0.5 0.0026 17.8 0.3 1.4 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:254323-257296 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~254323-257296 Sigma70_ner PF04546.8 g54746.t1 - 0.053 13.1 5.3 0.056 13 2.8 1.7 1 1 0 1 1 1 0 Sigma-70, non-essential region | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:221293-221844 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~221293-221844 BCAS2 PF05700.6 g74775.t1 - 0.0015 18 5.2 0.0021 17.5 3.6 1.2 1 0 0 1 1 1 1 Breast carcinoma amplified sequence 2 (BCAS2) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:59717-60163 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~59717-60163 eIF3g PF12353.3 g8602.t1 - 0.23 11.3 2.7 0.26 11.2 1.8 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit G | Ref_seq=scaffold338_contigs=10, transcript_loc=scaffold338_contigs=10:341212-341430 Augustus predicted protein sequence Tobacco scaffold338_contigs=10~341212-341430 Nucleoplasmin PF03066.10 g55930.t1 - 3 7.3 7.4 5.5 6.4 5.2 1.4 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:141708-144028 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~141708-144028 Nup160 PF11715.3 g77021.t1 - 0.047 11.8 0.1 0.052 11.6 0 1.1 1 0 0 1 1 1 0 Nucleoporin Nup120/160 | Ref_seq=scaffold1625_contigs=4, transcript_loc=scaffold1625_contigs=4:22564-22923 Augustus predicted protein sequence Tobacco scaffold1625_contigs=4~22564-22923 Cache_1 PF02743.13 g128019.t1 - 0.049 13.1 0 0.056 13 0 1.2 1 0 0 1 1 1 0 Cache domain | Ref_seq=scaffold2846_contigs=1, transcript_loc=scaffold2846_contigs=1:32601-32804 Augustus predicted protein sequence Tobacco scaffold2846_contigs=1~32601-32804 Mito_fiss_reg PF05308.6 g95194.t1 - 0.19 11 0.6 0.22 10.8 0.4 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator | Ref_seq=scaffold2053_contigs=16, transcript_loc=scaffold2053_contigs=16:322286-322624 Augustus predicted protein sequence Tobacco scaffold2053_contigs=16~322286-322624 RVT_3 PF13456.1 g78139.t1 - 9.9E-009 34.8 0 0.000000016 34.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold1640_contigs=5, transcript_loc=scaffold1640_contigs=5:24625-26920 Augustus predicted protein sequence Tobacco scaffold1640_contigs=5~24625-26920 DUF2743 PF10899.3 g38059.t1 - 0.0076 15.6 0.3 0.0087 15.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2743) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:108371-108811 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~108371-108811 Pex19 PF04614.7 g77348.t1 - 0.36 10.3 2.5 0.47 10 1.7 1.1 1 0 0 1 1 1 0 Pex19 protein family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:354935-355315 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~354935-355315 MNE1 PF13762.1 g30627.t1 - 0.0025 17.8 0.5 0.0027 17.7 0.3 1.1 1 0 0 1 1 1 1 Mitochondrial splicing apparatus component | Ref_seq=scaffold777_contigs=4, transcript_loc=scaffold777_contigs=4:46802-47407 Augustus predicted protein sequence Tobacco scaffold777_contigs=4~46802-47407 FtsQ PF03799.10 g74497.t1 - 0.13 12.4 0 0.17 12 0 1.3 1 0 0 1 1 1 0 Cell division protein FtsQ | Ref_seq=scaffold1555_contigs=12, transcript_loc=scaffold1555_contigs=12:430576-431459 Augustus predicted protein sequence Tobacco scaffold1555_contigs=12~430576-431459 VP7 PF00434.13 g27600.t1 - 0.11 11.3 0 0.15 10.9 0 1.2 1 0 0 1 1 1 0 Glycoprotein VP7 | Ref_seq=scaffold729_contigs=3, transcript_loc=scaffold729_contigs=3:5506-8493 Augustus predicted protein sequence Tobacco scaffold729_contigs=3~5506-8493 MHCassoc_trimer PF08831.5 g94005.t1 - 0.049 13.4 0.6 0.088 12.6 0.4 1.4 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:402906-403355 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~402906-403355 DUF1116 PF06545.6 g37228.t1 - 0.097 11.7 0 0.12 11.4 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1116) | Ref_seq=scaffold914_contigs=7, transcript_loc=scaffold914_contigs=7:148794-149054 Augustus predicted protein sequence Tobacco scaffold914_contigs=7~148794-149054 HrpA_pilin PF09589.5 g114604.t1 - 0.62 10.4 3.8 0.86 10 2.4 1.4 1 1 0 1 1 1 0 HrpA pilus formation protein | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:47720-48268 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~47720-48268 IFP_35_N PF07334.8 g35489.t1 - 0.0097 15.8 2.6 0.019 14.9 1.8 1.5 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:216601-218021 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~216601-218021 UBN2 PF14223.1 g24877.t1 - 0.0004 20.1 0 0.00052 19.7 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold680_contigs=7, transcript_loc=scaffold680_contigs=7:25203-25633 Augustus predicted protein sequence Tobacco scaffold680_contigs=7~25203-25633 Myc_N PF01056.13 g38323.t1 - 0.045 12.9 4.2 0.045 12.9 2.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold933_contigs=12, transcript_loc=scaffold933_contigs=12:361097-361297 Augustus predicted protein sequence Tobacco scaffold933_contigs=12~361097-361297 Ribosomal_60s PF00428.14 g30754.t1 - 0.013 15.8 2.9 0.019 15.3 2 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold779_contigs=3, transcript_loc=scaffold779_contigs=3:68214-68624 Augustus predicted protein sequence Tobacco scaffold779_contigs=3~68214-68624 DUF1151 PF06625.6 g95662.t1 - 0.14 11.8 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1151) | Ref_seq=scaffold2070_contigs=9, transcript_loc=scaffold2070_contigs=9:45253-45543 Augustus predicted protein sequence Tobacco scaffold2070_contigs=9~45253-45543 YdjO PF14169.1 g16698.t1 - 0.068 12.6 0.1 0.14 11.5 0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO | Ref_seq=scaffold523_contigs=15, transcript_loc=scaffold523_contigs=15:117870-118765 Augustus predicted protein sequence Tobacco scaffold523_contigs=15~117870-118765 MRP-S26 PF14943.1 g15405.t1 - 0.011 15.2 6.6 0.02 14.4 4.6 1.4 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:245257-245748 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~245257-245748 DBD_Tnp_Mut PF03108.10 g104138.t1 - 3E-011 42.7 1.4 8E-011 41.3 1 1.6 1 1 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold2333_contigs=2, transcript_loc=scaffold2333_contigs=2:65772-66026 Augustus predicted protein sequence Tobacco scaffold2333_contigs=2~65772-66026 zf-CCHC PF00098.18 g67022.t1 - 0.0016 18.2 4.1 0.0025 17.6 2.8 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:367557-367917 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~367557-367917 RVP_2 PF08284.6 g13822.t1 - 0.000000018 34.3 0 0.000000025 33.9 0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold455_contigs=9, transcript_loc=scaffold455_contigs=9:153691-155047 Augustus predicted protein sequence Tobacco scaffold455_contigs=9~153691-155047 DUF1168 PF06658.7 g88681.t1 - 0.61 9.5 34.2 0.024 14.1 19.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1168) | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:147736-149537 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~147736-149537 SIP PF04954.8 g13378.t1 - 0.068 13.5 0.2 0.13 12.6 0.1 1.5 1 0 0 1 1 1 0 Siderophore-interacting protein | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:69807-70208 Augustus predicted protein sequence Tobacco scaffold446_contigs=6~69807-70208 PhaP_Bmeg PF09602.5 g117349.t1 - 0.074 12.8 2.4 0.39 10.5 0.8 1.9 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) | Ref_seq=scaffold2684_contigs=8, transcript_loc=scaffold2684_contigs=8:267005-267226 Augustus predicted protein sequence Tobacco scaffold2684_contigs=8~267005-267226 Nop14 PF04147.7 g77276.t1 - 4.9 4.9 10 5.2 4.8 7 1 1 0 0 1 1 1 0 Nop14-like family | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:222689-224005 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~222689-224005 DUF724 PF05266.9 g35425.t1 - 0.044 13.4 2.3 0.059 12.9 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) | Ref_seq=scaffold874_contigs=5, transcript_loc=scaffold874_contigs=5:35254-35586 Augustus predicted protein sequence Tobacco scaffold874_contigs=5~35254-35586 DUF1725 PF08333.6 g63001.t1 - 0.13 11.5 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:184701-185231 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~184701-185231 LTV PF04180.9 g28375.t1 - 0.068 12.6 0.3 0.11 12 0.2 1.3 1 0 0 1 1 1 0 Low temperature viability protein | Ref_seq=scaffold744_contigs=4, transcript_loc=scaffold744_contigs=4:222023-225817 Augustus predicted protein sequence Tobacco scaffold744_contigs=4~222023-225817 Herpes_LMP1 PF05297.6 g35364.t1 - 1.3 7.8 6.2 0.22 10.4 1.8 1.4 1 1 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) | Ref_seq=scaffold871_contigs=9, transcript_loc=scaffold871_contigs=9:32074-32616 Augustus predicted protein sequence Tobacco scaffold871_contigs=9~32074-32616 HALZ PF02183.13 g24871.t1 - 0.084 12.6 1.5 0.49 10.1 0.1 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold680_contigs=7, transcript_loc=scaffold680_contigs=7:20407-21886 Augustus predicted protein sequence Tobacco scaffold680_contigs=7~20407-21886 MULE PF10551.4 g62446.t1 - 0.000031 24 0 0.000053 23.3 0 1.4 1 0 0 1 1 1 1 MULE transposase domain | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:242636-242950 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~242636-242950 RMMBL PF07521.7 g90289.t1 - 0.022 14.5 0.1 0.037 13.8 0.1 1.4 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:513864-514569 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~513864-514569 PRCC PF10253.4 g107564.t1 - 0.012 16.3 0.2 0.013 16.2 0.1 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold2394_contigs=12, transcript_loc=scaffold2394_contigs=12:339124-339348 Augustus predicted protein sequence Tobacco scaffold2394_contigs=12~339124-339348 Period_C PF12114.3 g120964.t1 - 0.29 10.7 9.5 0.34 10.4 6.6 1.2 1 0 0 1 1 1 0 Period protein 2/3C-terminal region | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:110980-112403 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~110980-112403 Transposase_28 PF04195.7 g19171.t1 - 0.00022 20.5 0.1 0.00029 20.1 0.1 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:503763-504191 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~503763-504191 Syntaxin-18_N PF10496.4 g37820.t1 - 0.021 14.6 0 0.039 13.7 0 1.4 1 0 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus | Ref_seq=scaffold929_contigs=9, transcript_loc=scaffold929_contigs=9:71870-72866 Augustus predicted protein sequence Tobacco scaffold929_contigs=9~71870-72866 SpoA PF01052.15 g105869.t1 - 0.038 13.5 0.1 0.065 12.8 0 1.4 1 0 0 1 1 1 0 Surface presentation of antigens (SPOA) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:742813-743280 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~742813-743280 RecO_N_2 PF13114.1 g47294.t1 - 0.0000093 25.2 0 0.11 12.2 0 2.1 1 1 1 2 2 2 2 RecO N terminal | Ref_seq=scaffold1092_contigs=11, transcript_loc=scaffold1092_contigs=11:17564-18523 Augustus predicted protein sequence Tobacco scaffold1092_contigs=11~17564-18523 BChl_A PF02327.12 g86196.t1 - 0.069 11.7 0.6 0.08 11.5 0.4 1 1 0 0 1 1 1 0 Bacteriochlorophyll A protein | Ref_seq=scaffold1842_contigs=9, transcript_loc=scaffold1842_contigs=9:192087-192608 Augustus predicted protein sequence Tobacco scaffold1842_contigs=9~192087-192608 DUF3704 PF12488.3 g60163.t1 - 3.7 7.2 5.1 2 8.1 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3704) | Ref_seq=scaffold1303_contigs=5, transcript_loc=scaffold1303_contigs=5:129988-130931 Augustus predicted protein sequence Tobacco scaffold1303_contigs=5~129988-130931 CHU_C PF13585.1 g55974.t1 - 8.7 6.3 6.2 86 3.1 4.3 2.3 1 1 0 1 1 1 0 C-terminal domain of CHU protein family | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:268763-270319 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~268763-270319 PAT1 PF09770.4 g40490.t1 - 3 5.9 10.5 3.2 5.8 7.2 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold976_contigs=1, transcript_loc=scaffold976_contigs=1:1655-4956 Augustus predicted protein sequence Tobacco scaffold976_contigs=1~1655-4956 GP41 PF00517.12 g40456.t1 - 0.42 10.1 3 0.51 9.8 1.8 1.3 1 1 0 1 1 1 0 Retroviral envelope protein | Ref_seq=scaffold975_contigs=17, transcript_loc=scaffold975_contigs=17:253575-254099 Augustus predicted protein sequence Tobacco scaffold975_contigs=17~253575-254099 DUF2587 PF10759.4 g78677.t1 - 0.017 14.4 1.4 0.038 13.3 0.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2587) | Ref_seq=scaffold1667_contigs=5, transcript_loc=scaffold1667_contigs=5:64359-65247 Augustus predicted protein sequence Tobacco scaffold1667_contigs=5~64359-65247 BSD PF03909.12 g70061.t1 - 0.1 12.3 0.8 0.2 11.4 0.5 1.4 1 0 0 1 1 1 0 BSD domain | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:175151-175918 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~175151-175918 MbeB_N PF04837.7 g108052.t1 - 0.1 12.6 0.4 0.5 10.4 0.1 2 2 0 0 2 2 2 0 MbeB-like, N-term conserved region | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:62468-62701 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~62468-62701 ATHILA PF03078.10 g59817.t1 - 0.00000006 31.6 0 0.000000072 31.4 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:252422-252688 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~252422-252688 zf-BED PF02892.10 g87251.t1 - 0.002 17.8 0.1 0.0046 16.6 0.1 1.6 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1876_contigs=18, transcript_loc=scaffold1876_contigs=18:127835-128491 Augustus predicted protein sequence Tobacco scaffold1876_contigs=18~127835-128491 DUF3634 PF12321.3 g105803.t1 - 0.14 12.1 0.8 0.15 12 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3634) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:378152-378358 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~378152-378358 LURAP PF14854.1 g85333.t1 - 0.15 11.7 0 0.2 11.4 0 1.1 1 0 0 1 1 1 0 Leucine rich adaptor protein | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:223943-224254 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~223943-224254 QueF_N PF14819.1 g110765.t1 - 0.11 12.6 0 0.18 11.9 0 1.4 1 0 0 1 1 1 0 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:408989-410879 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~408989-410879 YaeQ PF07152.7 g62257.t1 - 0.14 11.4 1.4 0.22 10.8 0.9 1.3 1 0 0 1 1 1 0 YaeQ protein | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:306429-307368 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~306429-307368 PAT1 PF09770.4 g53995.t1 - 4.8 5.3 10.3 5.4 5.1 7.2 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:602311-602733 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~602311-602733 NADH5_C PF06455.6 g69631.t1 - 1.7 7.9 6.1 0.52 9.6 2.4 1.4 2 0 0 2 2 2 0 NADH dehydrogenase subunit 5 C-terminus | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:670144-671197 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~670144-671197 Gifsy-2 PF13856.1 g114738.t1 - 0.026 14.6 0.3 6.9 6.8 0 2.3 2 0 0 2 2 2 0 ATP-binding sugar transporter from pro-phage | Ref_seq=scaffold2655_contigs=13, transcript_loc=scaffold2655_contigs=13:51665-53027 Augustus predicted protein sequence Tobacco scaffold2655_contigs=13~51665-53027 PP2 PF14299.1 g3378.t1 - 0.000037 23.1 0 0.000044 22.9 0 1.2 1 0 0 1 1 1 1 Phloem protein 2 | Ref_seq=scaffold231_contigs=3, transcript_loc=scaffold231_contigs=3:85110-85436 Augustus predicted protein sequence Tobacco scaffold231_contigs=3~85110-85436 NAM-associated PF14303.1 g76331.t1 - 0.0051 17.1 0.9 0.006 16.9 0.6 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1611_contigs=6, transcript_loc=scaffold1611_contigs=6:209784-210251 Augustus predicted protein sequence Tobacco scaffold1611_contigs=6~209784-210251 Flag1_repress PF03614.8 g63378.t1 - 0.02 14.4 0 0.024 14.1 0 1.1 1 0 0 1 1 1 0 Repressor of phase-1 flagellin | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:77589-77828 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~77589-77828 PapD_C PF02753.12 g84718.t1 - 0.0052 16.5 0 0.0066 16.2 0 1.1 1 0 0 1 1 1 1 Pili assembly chaperone PapD, C-terminal domain | Ref_seq=scaffold1827_contigs=21, transcript_loc=scaffold1827_contigs=21:206149-206599 Augustus predicted protein sequence Tobacco scaffold1827_contigs=21~206149-206599 ANTH PF07651.11 g65801.t1 - 0.085 11.5 0.1 0.096 11.3 0 1.1 1 0 0 1 1 1 0 ANTH domain | Ref_seq=scaffold1429_contigs=14, transcript_loc=scaffold1429_contigs=14:109236-110734 Augustus predicted protein sequence Tobacco scaffold1429_contigs=14~109236-110734 API5 PF05918.6 g22403.t1 - 1.1 7.6 5.8 1.5 7.1 4 1.2 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) | Ref_seq=scaffold619_contigs=14, transcript_loc=scaffold619_contigs=14:184041-186380 Augustus predicted protein sequence Tobacco scaffold619_contigs=14~184041-186380 PRRSV_2b PF07069.6 g12141.t1 - 0.14 12.4 0 0.38 11 0 1.6 1 1 1 2 2 2 0 Porcine reproductive and respiratory syndrome virus 2b | Ref_seq=scaffold423_contigs=9, transcript_loc=scaffold423_contigs=9:63180-64533 Augustus predicted protein sequence Tobacco scaffold423_contigs=9~63180-64533 DUF605 PF04652.11 g25328.t1 - 1.9 7.8 12 2.2 7.6 8.3 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:84519-86130 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~84519-86130 UCR_hinge PF02320.11 g75757.t1 - 0.056 13.3 0.1 0.083 12.8 0.1 1.3 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase hinge protein | Ref_seq=scaffold1592_contigs=13, transcript_loc=scaffold1592_contigs=13:37722-38062 Augustus predicted protein sequence Tobacco scaffold1592_contigs=13~37722-38062 DUF2457 PF10446.4 g114252.t1 - 0.056 12.1 5 0.057 12.1 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) | Ref_seq=scaffold2643_contigs=16, transcript_loc=scaffold2643_contigs=16:365268-365571 Augustus predicted protein sequence Tobacco scaffold2643_contigs=16~365268-365571 Arg_repressor_C PF02863.13 g115418.t1 - 0.15 11.5 0 0.22 11 0 1.3 1 0 0 1 1 1 0 Arginine repressor, C-terminal domain | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:310564-310906 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~310564-310906 DUF4047 PF13256.1 g52050.t1 - 0.0057 16.5 0.2 0.025 14.5 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4047) | Ref_seq=scaffold1175_contigs=16, transcript_loc=scaffold1175_contigs=16:260511-261098 Augustus predicted protein sequence Tobacco scaffold1175_contigs=16~260511-261098 Phage_lambd_GpG PF06894.6 g129414.t1 - 0.086 12.4 0 0.15 11.6 0 1.3 1 0 0 1 1 1 0 Bacteriophage lambda minor tail protein (GpG) | Ref_seq=scaffold2952_contigs=1, transcript_loc=scaffold2952_contigs=1:931-3772 Augustus predicted protein sequence Tobacco scaffold2952_contigs=1~931-3772 WH1 PF00568.18 g60377.t1 - 0.057 13.1 0.2 0.071 12.8 0.2 1.1 1 0 0 1 1 1 0 WH1 domain | Ref_seq=scaffold1308_contigs=16, transcript_loc=scaffold1308_contigs=16:178921-180021 Augustus predicted protein sequence Tobacco scaffold1308_contigs=16~178921-180021 bZIP_Maf PF03131.12 g73787.t1 - 5.2 7.4 9 0.08 13.2 1.6 1.6 2 0 0 2 2 2 0 bZIP Maf transcription factor | Ref_seq=scaffold1548_contigs=4, transcript_loc=scaffold1548_contigs=4:2947-3219 Augustus predicted protein sequence Tobacco scaffold1548_contigs=4~2947-3219 FH2 PF02181.18 g66053.t1 - 0.022 13.6 0.3 0.056 12.3 0 1.6 2 0 0 2 2 2 0 Formin Homology 2 Domain | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:227448-228236 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~227448-228236 DUF1199 PF06712.6 g2655.t1 - 0.1 12.4 0.9 0.19 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1199) | Ref_seq=scaffold217_contigs=3, transcript_loc=scaffold217_contigs=3:30654-31025 Augustus predicted protein sequence Tobacco scaffold217_contigs=3~30654-31025 Pescadillo_N PF06732.6 g115640.t1 - 0.058 12.6 0.1 0.12 11.5 0 1.4 2 0 0 2 2 2 0 Pescadillo N-terminus | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:853962-856916 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~853962-856916 PMD PF10536.4 g42278.t1 - 0.000011 24.5 0 0.000014 24.3 0 1.4 1 1 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1004_contigs=12, transcript_loc=scaffold1004_contigs=12:325863-327306 Augustus predicted protein sequence Tobacco scaffold1004_contigs=12~325863-327306 Myc_N PF01056.13 g127963.t1 - 0.017 14.3 3.5 0.017 14.2 2.4 1 1 0 0 1 1 1 0 Myc amino-terminal region | Ref_seq=scaffold2844_contigs=1, transcript_loc=scaffold2844_contigs=1:7695-8024 Augustus predicted protein sequence Tobacco scaffold2844_contigs=1~7695-8024 IF2_assoc PF08364.6 g8763.t1 - 0.13 12.3 0.5 0.31 11 0.4 1.6 1 0 0 1 1 1 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:140829-141974 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~140829-141974 DUF3931 PF13082.1 g70654.t1 - 0.088 12.6 0 0.12 12.2 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) | Ref_seq=scaffold1496_contigs=26, transcript_loc=scaffold1496_contigs=26:756987-757211 Augustus predicted protein sequence Tobacco scaffold1496_contigs=26~756987-757211 IN_DBD_C PF00552.16 g21410.t1 - 0.043 13.2 0.6 0.077 12.4 0.4 1.4 1 0 0 1 1 1 0 Integrase DNA binding domain | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:371717-372031 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~371717-372031 ATHILA PF03078.10 g86085.t1 - 2.8E-009 36 0 3.3E-009 35.8 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1841_contigs=12, transcript_loc=scaffold1841_contigs=12:157208-157585 Augustus predicted protein sequence Tobacco scaffold1841_contigs=12~157208-157585 PAT1 PF09770.4 g8732.t1 - 6.3 4.9 12 6.9 4.7 8.3 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:82619-83158 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~82619-83158 DUF1686 PF07937.6 g102133.t1 - 0.028 14 0.7 0.032 13.8 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1686) | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:175245-175547 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~175245-175547 zf-CCHC PF00098.18 g16000.t1 - 0.011 15.6 0.7 0.021 14.7 0.5 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold508_contigs=9, transcript_loc=scaffold508_contigs=9:23574-23970 Augustus predicted protein sequence Tobacco scaffold508_contigs=9~23574-23970 Hormone_5 PF00184.12 g31786.t1 - 0.0099 16.4 2.1 0.013 16 1.5 1.2 1 0 0 1 1 1 1 Neurohypophysial hormones, C-terminal Domain | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:39175-39444 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~39175-39444 Stb3 PF10330.4 g122212.t1 - 0.11 12.1 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 Putative Sin3 binding protein | Ref_seq=scaffold2742_contigs=4, transcript_loc=scaffold2742_contigs=4:77556-78020 Augustus predicted protein sequence Tobacco scaffold2742_contigs=4~77556-78020 MarR PF01047.17 g69923.t1 - 0.016 14.9 0 0.053 13.2 0 1.9 1 1 1 2 2 2 0 MarR family | Ref_seq=scaffold1491_contigs=15, transcript_loc=scaffold1491_contigs=15:573791-574123 Augustus predicted protein sequence Tobacco scaffold1491_contigs=15~573791-574123 DUF506 PF04720.7 g121315.t1 - 0.015 14.9 0.2 0.015 14.9 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF506) | Ref_seq=scaffold2733_contigs=41, transcript_loc=scaffold2733_contigs=41:744495-744816 Augustus predicted protein sequence Tobacco scaffold2733_contigs=41~744495-744816 Herpes_US12 PF05363.7 g55178.t1 - 0.17 12.4 0.5 0.46 11 0.1 1.9 1 1 1 2 2 2 0 Herpesvirus US12 family | Ref_seq=scaffold1215_contigs=2, transcript_loc=scaffold1215_contigs=2:71477-71830 Augustus predicted protein sequence Tobacco scaffold1215_contigs=2~71477-71830 DUF3847 PF12958.2 g31789.t1 - 0.0065 16.2 0 0.0081 15.8 0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3847) | Ref_seq=scaffold799_contigs=2, transcript_loc=scaffold799_contigs=2:44137-44382 Augustus predicted protein sequence Tobacco scaffold799_contigs=2~44137-44382 Zein PF01559.11 g113347.t1 - 0.053 12.7 0.4 0.061 12.5 0.3 1.1 1 0 0 1 1 1 0 Zein seed storage protein | Ref_seq=scaffold2627_contigs=1, transcript_loc=scaffold2627_contigs=1:1-564 Augustus predicted protein sequence Tobacco scaffold2627_contigs=1~1-564 Chitin_bind_1 PF00187.14 g129121.t1 - 0.084 12.8 2.1 0.21 11.5 1.5 1.6 1 0 0 1 1 1 0 Chitin recognition protein | Ref_seq=scaffold2917_contigs=1, transcript_loc=scaffold2917_contigs=1:18302-19116 Augustus predicted protein sequence Tobacco scaffold2917_contigs=1~18302-19116 DUF260 PF03195.9 g60347.t1 - 0.0000087 25.9 5.8 0.000011 25.6 4 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF260 | Ref_seq=scaffold1306_contigs=15, transcript_loc=scaffold1306_contigs=15:52608-52838 Augustus predicted protein sequence Tobacco scaffold1306_contigs=15~52608-52838 HCBP_related PF06594.6 g65488.t1 - 0.096 12.3 0 0.21 11.2 0 1.5 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain | Ref_seq=scaffold1415_contigs=17, transcript_loc=scaffold1415_contigs=17:25129-25575 Augustus predicted protein sequence Tobacco scaffold1415_contigs=17~25129-25575 Prp19_bind PF06991.6 g12759.t1 - 0.91 8.7 5.4 1.1 8.4 3.7 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:426122-426802 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~426122-426802 K167R PF08065.7 g90174.t1 - 0.15 12.2 6.3 0.048 13.7 1.8 1.9 1 1 1 2 2 2 0 K167R (NUC007) repeat | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:245210-245707 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~245210-245707 Microtub_assoc PF07989.6 g8398.t1 - 0.0015 18.2 0 1.9 8.3 0 2.1 2 0 0 2 2 2 2 Microtubule associated | Ref_seq=scaffold336_contigs=3, transcript_loc=scaffold336_contigs=3:12329-12971 Augustus predicted protein sequence Tobacco scaffold336_contigs=3~12329-12971 DUF3323 PF11796.3 g26363.t1 - 0.12 11.7 3.5 0.15 11.3 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:175547-176065 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~175547-176065 BTV_NS2 PF04514.7 g1618.t1 - 0.067 12 3.3 0.094 11.5 2.3 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 | Ref_seq=scaffold189_contigs=2, transcript_loc=scaffold189_contigs=2:16622-17703 Augustus predicted protein sequence Tobacco scaffold189_contigs=2~16622-17703 DUF4635 PF15466.1 g67489.t1 - 0.14 11.4 1.3 0.18 11 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:361174-362076 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~361174-362076 DNA_methylase PF00145.12 g63948.t1 - 0.12 11.4 0 0.13 11.4 0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase | Ref_seq=scaffold1384_contigs=11, transcript_loc=scaffold1384_contigs=11:1-160 Augustus predicted protein sequence Tobacco scaffold1384_contigs=11~1-160 KRTAP PF11759.3 g120308.t1 - 4.2 7.6 8.8 790 0.4 6.1 2.6 1 1 0 1 1 1 0 Keratin-associated matrix | Ref_seq=scaffold2722_contigs=6, transcript_loc=scaffold2722_contigs=6:177647-178721 Augustus predicted protein sequence Tobacco scaffold2722_contigs=6~177647-178721 Adeno_E1B_55K_N PF04623.7 g87765.t1 - 8.7 6.9 12.7 0.52 10.8 3.2 2.3 2 0 0 2 2 2 0 Adenovirus E1B protein N-terminus | Ref_seq=scaffold1896_contigs=29, transcript_loc=scaffold1896_contigs=29:191773-192327 Augustus predicted protein sequence Tobacco scaffold1896_contigs=29~191773-192327 zf-CCHC PF00098.18 g29517.t1 - 0.00024 20.8 0.9 0.00034 20.4 0.6 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold760_contigs=13, transcript_loc=scaffold760_contigs=13:114006-114227 Augustus predicted protein sequence Tobacco scaffold760_contigs=13~114006-114227 BMC PF00936.14 g77454.t1 - 0.045 13.4 0.3 0.068 12.8 0.1 1.3 1 1 0 1 1 1 0 BMC domain | Ref_seq=scaffold1630_contigs=40, transcript_loc=scaffold1630_contigs=40:117312-117560 Augustus predicted protein sequence Tobacco scaffold1630_contigs=40~117312-117560 YaaC PF14175.1 g12907.t1 - 0.022 13.7 0.1 0.026 13.5 0.1 1.1 1 0 0 1 1 1 0 YaaC-like Protein | Ref_seq=scaffold436_contigs=4, transcript_loc=scaffold436_contigs=4:58021-58404 Augustus predicted protein sequence Tobacco scaffold436_contigs=4~58021-58404 Ribosomal_L37e PF01907.14 g109619.t1 - 0.0093 15.7 0.6 0.013 15.2 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:143328-143552 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~143328-143552 Linocin_M18 PF04454.7 g71082.t1 - 0.048 12.5 0 0.077 11.8 0 1.3 1 0 0 1 1 1 0 Encapsulating protein for peroxidase | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:6486-7145 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~6486-7145 DUF1762 PF08574.5 g17463.t1 - 0.06 13.7 1.9 2.7 8.4 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1762) | Ref_seq=scaffold529_contigs=26, transcript_loc=scaffold529_contigs=26:733730-734692 Augustus predicted protein sequence Tobacco scaffold529_contigs=26~733730-734692 TORC_N PF12884.2 g89129.t1 - 0.077 13.5 0 0.22 12 0 1.8 1 0 0 1 1 1 0 Transducer of regulated CREB activity, N terminus | Ref_seq=scaffold1939_contigs=7, transcript_loc=scaffold1939_contigs=7:145000-145902 Augustus predicted protein sequence Tobacco scaffold1939_contigs=7~145000-145902 Herpes_US12 PF05363.7 g65904.t1 - 0.044 14.2 0.1 0.17 12.4 0 1.9 1 1 1 2 2 2 0 Herpesvirus US12 family | Ref_seq=scaffold1430_contigs=34, transcript_loc=scaffold1430_contigs=34:33401-34009 Augustus predicted protein sequence Tobacco scaffold1430_contigs=34~33401-34009 TBX PF12598.3 g127825.t1 - 0.083 13.2 1.6 0.14 12.5 1.1 1.4 1 0 0 1 1 1 0 T-box transcription factor | Ref_seq=scaffold2838_contigs=1, transcript_loc=scaffold2838_contigs=1:30728-31272 Augustus predicted protein sequence Tobacco scaffold2838_contigs=1~30728-31272 LPAM_1 PF08139.7 g21945.t1 - 0.34 11.2 3.3 0.54 10.5 2.3 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site | Ref_seq=scaffold606_contigs=3, transcript_loc=scaffold606_contigs=3:6074-6301 Augustus predicted protein sequence Tobacco scaffold606_contigs=3~6074-6301 CD99L2 PF12301.3 g116605.t1 - 0.0011 18.7 1.9 0.0015 18.2 1.3 1.2 1 0 0 1 1 1 1 CD99 antigen like protein 2 | Ref_seq=scaffold2672_contigs=4, transcript_loc=scaffold2672_contigs=4:21777-24265 Augustus predicted protein sequence Tobacco scaffold2672_contigs=4~21777-24265 zf-CCHC PF00098.18 g54791.t1 - 0.00011 21.9 5.1 0.00017 21.3 3.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1212_contigs=14, transcript_loc=scaffold1212_contigs=14:374695-374955 Augustus predicted protein sequence Tobacco scaffold1212_contigs=14~374695-374955 FlxA PF14282.1 g63464.t1 - 0.029 14.3 3.5 0.029 14.3 2.4 3.7 3 1 1 4 4 4 0 FlxA-like protein | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:414743-415618 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~414743-415618 Tetradecapep PF08187.6 g48558.t1 - 0.12 12.2 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 Myoactive tetradecapeptides family | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:955429-955680 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~955429-955680 IL13 PF03487.8 g49602.t1 - 0.02 14.5 0 0.034 13.8 0 1.4 1 0 0 1 1 1 0 Interleukin-13 | Ref_seq=scaffold1130_contigs=3, transcript_loc=scaffold1130_contigs=3:20609-20993 Augustus predicted protein sequence Tobacco scaffold1130_contigs=3~20609-20993 DUF372 PF04036.7 g129605.t1 - 0.0017 17.8 0.4 0.88 9 0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF372) | Ref_seq=scaffold2998_contigs=1, transcript_loc=scaffold2998_contigs=1:2837-3769 Augustus predicted protein sequence Tobacco scaffold2998_contigs=1~2837-3769 LGT PF01790.13 g101401.t1 - 0.047 12.6 0.1 0.047 12.6 0.1 1.1 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase | Ref_seq=scaffold2210_contigs=4, transcript_loc=scaffold2210_contigs=4:180292-180651 Augustus predicted protein sequence Tobacco scaffold2210_contigs=4~180292-180651 ATHILA PF03078.10 g128737.t1 - 0.001 17.7 0.1 0.45 9 0.1 2.1 2 0 0 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2884_contigs=1, transcript_loc=scaffold2884_contigs=1:30566-31480 Augustus predicted protein sequence Tobacco scaffold2884_contigs=1~30566-31480 NAM-associated PF14303.1 g111219.t1 - 0.00000024 31.1 5.4 0.0043 17.3 0.5 2.2 1 1 1 2 2 2 2 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2581_contigs=30, transcript_loc=scaffold2581_contigs=30:156191-157008 Augustus predicted protein sequence Tobacco scaffold2581_contigs=30~156191-157008 RVT_3 PF13456.1 g77577.t1 - 0.11 12.3 0 0.13 12 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1633_contigs=40, transcript_loc=scaffold1633_contigs=40:21644-22131 Augustus predicted protein sequence Tobacco scaffold1633_contigs=40~21644-22131 WWbp PF10349.4 g33864.t1 - 0.061 14.2 0.6 0.088 13.7 0.4 1.2 1 0 0 1 1 1 0 WW-domain ligand protein | Ref_seq=scaffold834_contigs=26, transcript_loc=scaffold834_contigs=26:929774-930911 Augustus predicted protein sequence Tobacco scaffold834_contigs=26~929774-930911 Pox_RNA_Pol_22 PF05273.8 g82387.t1 - 0.097 12.2 0 0.097 12.2 0 1.1 1 0 0 1 1 1 0 Poxvirus RNA polymerase 22 kDa subunit | Ref_seq=scaffold1743_contigs=11, transcript_loc=scaffold1743_contigs=11:389893-390186 Augustus predicted protein sequence Tobacco scaffold1743_contigs=11~389893-390186 DBD_Tnp_Mut PF03108.10 g81772.t1 - 4.1E-009 35.8 0 8.9E-009 34.8 0 1.6 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:78650-79364 Augustus predicted protein sequence Tobacco scaffold1736_contigs=8~78650-79364 DUF919 PF06034.6 g74255.t1 - 0.065 12.8 0.5 0.14 11.7 0.4 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) | Ref_seq=scaffold1552_contigs=5, transcript_loc=scaffold1552_contigs=5:299-817 Augustus predicted protein sequence Tobacco scaffold1552_contigs=5~299-817 DUF736 PF05284.7 g115353.t1 - 0.07 12.9 0 0.085 12.6 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF736) | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:137218-137615 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~137218-137615 DUF366 PF04017.7 g63056.t1 - 0.009 15.2 0 0.01 15.1 0 1 1 0 0 1 1 1 1 Domain of unknown function (DUF366) | Ref_seq=scaffold1363_contigs=4, transcript_loc=scaffold1363_contigs=4:27067-27276 Augustus predicted protein sequence Tobacco scaffold1363_contigs=4~27067-27276 Big_1 PF02369.11 g122031.t1 - 0.034 14 0.3 0.046 13.6 0.2 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:44705-45088 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~44705-45088 DUF1347 PF07079.6 g105087.t1 - 0.021 13 0 0.025 12.8 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2350_contigs=15, transcript_loc=scaffold2350_contigs=15:285659-286009 Augustus predicted protein sequence Tobacco scaffold2350_contigs=15~285659-286009 ERM PF00769.14 g2501.t1 - 0.054 13 1.1 0.061 12.8 0.8 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family | Ref_seq=scaffold213_contigs=5, transcript_loc=scaffold213_contigs=5:135460-135855 Augustus predicted protein sequence Tobacco scaffold213_contigs=5~135460-135855 DUF3136 PF11334.3 g8157.t1 - 0.063 12.7 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3136) | Ref_seq=scaffold330_contigs=6, transcript_loc=scaffold330_contigs=6:142348-143235 Augustus predicted protein sequence Tobacco scaffold330_contigs=6~142348-143235 DUF2051 PF09738.4 g23516.t1 - 0.07 12.4 2.5 0.087 12.1 1.8 1.2 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) | Ref_seq=scaffold648_contigs=4, transcript_loc=scaffold648_contigs=4:149980-150449 Augustus predicted protein sequence Tobacco scaffold648_contigs=4~149980-150449 Peptidase_M16_C PF05193.16 g43197.t1 - 0.037 13.6 0 0.047 13.3 0 1.1 1 0 0 1 1 1 0 Peptidase M16 inactive domain | Ref_seq=scaffold1013_contigs=9, transcript_loc=scaffold1013_contigs=9:88797-89487 Augustus predicted protein sequence Tobacco scaffold1013_contigs=9~88797-89487 ASL_C2 PF14698.1 g63421.t1 - 0.056 13.5 0 0.11 12.5 0 1.5 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal | Ref_seq=scaffold1373_contigs=18, transcript_loc=scaffold1373_contigs=18:244112-244566 Augustus predicted protein sequence Tobacco scaffold1373_contigs=18~244112-244566 BLOC1_2 PF10046.4 g128443.t1 - 0.00067 19.7 1.5 0.00067 19.7 1.1 1.4 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 | Ref_seq=scaffold2868_contigs=1, transcript_loc=scaffold2868_contigs=1:18881-19477 Augustus predicted protein sequence Tobacco scaffold2868_contigs=1~18881-19477 nec1 PF10379.4 g90266.t1 - 0.087 12 1.1 0.95 8.7 0.2 2 1 1 1 2 2 2 0 Virulence protein nec1 | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:479162-479545 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~479162-479545 DUF2828 PF11443.3 g57980.t1 - 0.092 10.9 0 0.092 10.9 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:32312-32569 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~32312-32569 DUF3515 PF12028.3 g67004.t1 - 0.12 11.6 0 0.13 11.4 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3515) | Ref_seq=scaffold1445_contigs=10, transcript_loc=scaffold1445_contigs=10:331620-332057 Augustus predicted protein sequence Tobacco scaffold1445_contigs=10~331620-332057 ATHILA PF03078.10 g43965.t1 - 4.7E-010 38.6 0 0.00039 19.1 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1031_contigs=7, transcript_loc=scaffold1031_contigs=7:47850-48269 Augustus predicted protein sequence Tobacco scaffold1031_contigs=7~47850-48269 Phage_fiber PF03335.8 g50439.t1 - 0.043 13.4 4.9 0.34 10.7 0.4 3.1 3 0 0 3 3 3 0 Phage tail fibre repeat | Ref_seq=scaffold1139_contigs=15, transcript_loc=scaffold1139_contigs=15:326352-326630 Augustus predicted protein sequence Tobacco scaffold1139_contigs=15~326352-326630 DUF4219 PF13961.1 g13552.t1 - 0.00064 19 0.2 0.001 18.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:45464-45691 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~45464-45691 DUF4201 PF13870.1 g129838.t1 - 0.025 14 0.4 0.05 13 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) | Ref_seq=scaffold3100_contigs=1, transcript_loc=scaffold3100_contigs=1:3244-3687 Augustus predicted protein sequence Tobacco scaffold3100_contigs=1~3244-3687 Ribosomal_L15e PF00827.12 g91108.t1 - 0.00069 19.1 0.7 0.0011 18.5 0.5 1.4 1 0 0 1 1 1 1 Ribosomal L15 | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:187480-188575 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~187480-188575 SCA7 PF08313.7 g112411.t1 - 0.044 13.3 0 11 5.7 0 2.3 2 0 0 2 2 2 0 SCA7, zinc-binding domain | Ref_seq=scaffold2610_contigs=20, transcript_loc=scaffold2610_contigs=20:96246-96903 Augustus predicted protein sequence Tobacco scaffold2610_contigs=20~96246-96903 zf-CCHC PF00098.18 g100100.t1 - 0.014 15.3 0.1 0.025 14.4 0.1 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold2185_contigs=9, transcript_loc=scaffold2185_contigs=9:39763-41003 Augustus predicted protein sequence Tobacco scaffold2185_contigs=9~39763-41003 Elongin_A PF06881.6 g35248.t1 - 0.079 13.3 3.7 0.087 13.2 2.5 1 1 0 0 1 1 1 0 RNA polymerase II transcription factor SIII (Elongin) subunit A | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:277674-277916 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~277674-277916 Herpes_gE PF02480.11 g61207.t1 - 0.00078 17.8 0.1 0.00088 17.6 0.1 1 1 0 0 1 1 1 1 Alphaherpesvirus glycoprotein E | Ref_seq=scaffold1329_contigs=11, transcript_loc=scaffold1329_contigs=11:204825-205121 Augustus predicted protein sequence Tobacco scaffold1329_contigs=11~204825-205121 Herpes_UL56 PF04534.7 g30149.t1 - 0.035 13.8 0.6 0.043 13.5 0.4 1.1 1 0 0 1 1 1 0 Herpesvirus UL56 protein | Ref_seq=scaffold769_contigs=2, transcript_loc=scaffold769_contigs=2:50037-50519 Augustus predicted protein sequence Tobacco scaffold769_contigs=2~50037-50519 Tropomyosin PF00261.15 g115249.t1 - 0.098 11.7 0 0.11 11.5 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:324043-324459 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~324043-324459 Prefoldin_2 PF01920.15 g99321.t1 - 0.15 11.8 1.4 0.28 10.9 1 1.5 1 1 0 1 1 1 0 Prefoldin subunit | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:170098-170639 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~170098-170639 Zn_Tnp_IS1595 PF12760.2 g47527.t1 - 0.096 12.5 1.4 0.22 11.3 0.6 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:170161-170436 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~170161-170436 DUF4259 PF14078.1 g92569.t1 - 0.025 15 0.2 0.066 13.7 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4259) | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:17569-19336 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~17569-19336 DUF3821 PF12863.2 g4531.t1 - 0.0081 15.8 0 0.01 15.5 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:55095-56181 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~55095-56181 Stm1_N PF09598.5 g44252.t1 - 7.9 7.2 7.6 2 9.1 2.8 1.7 1 1 1 2 2 2 0 Stm1 | Ref_seq=scaffold1035_contigs=10, transcript_loc=scaffold1035_contigs=10:102581-103087 Augustus predicted protein sequence Tobacco scaffold1035_contigs=10~102581-103087 PMT_C PF11647.3 g73112.t1 - 0.12 11.9 0 0.24 11 0 1.5 1 0 0 1 1 1 0 C-terminal region of Pasteurella multocida toxin residues 569-1285 | Ref_seq=scaffold1529_contigs=6, transcript_loc=scaffold1529_contigs=6:89324-89710 Augustus predicted protein sequence Tobacco scaffold1529_contigs=6~89324-89710 DUF1534 PF07551.6 g41408.t1 - 0.099 12.1 0.4 0.16 11.5 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1534) | Ref_seq=scaffold989_contigs=10, transcript_loc=scaffold989_contigs=10:220265-221194 Augustus predicted protein sequence Tobacco scaffold989_contigs=10~220265-221194 TPR_MLP1_2 PF07926.7 g12504.t1 - 0.012 15.3 0 0.019 14.7 0 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:29667-30514 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~29667-30514 TRADD_N PF09034.5 g55204.t1 - 0.058 13.3 0.8 0.061 13.3 0.6 1.2 1 0 0 1 1 1 0 TRADD, N-terminal domain | Ref_seq=scaffold1216_contigs=10, transcript_loc=scaffold1216_contigs=10:42521-42766 Augustus predicted protein sequence Tobacco scaffold1216_contigs=10~42521-42766 CENP-R PF06729.7 g72294.t1 - 0.021 14.5 4.6 0.022 14.4 2.6 1.5 1 1 0 1 1 1 0 Kinetochore component, CENP-R | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:732205-732600 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~732205-732600 Transcrip_act PF04949.8 g38443.t1 - 0.0027 17.3 0.3 0.0031 17.1 0.2 1.1 1 0 0 1 1 1 1 Transcriptional activator | Ref_seq=scaffold940_contigs=2, transcript_loc=scaffold940_contigs=2:30059-30550 Augustus predicted protein sequence Tobacco scaffold940_contigs=2~30059-30550 Sipho_Gp157 PF05565.6 g27008.t1 - 0.12 11.9 0.4 0.93 9 0.3 2 1 1 0 1 1 1 0 Siphovirus Gp157 | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:708064-709503 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~708064-709503 ATHILA PF03078.10 g70151.t1 - 0.000000011 34.1 0 0.000000016 33.5 0 1.2 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1492_contigs=3, transcript_loc=scaffold1492_contigs=3:334743-335670 Augustus predicted protein sequence Tobacco scaffold1492_contigs=3~334743-335670 Neisseria_TspB PF05616.8 g102809.t1 - 0.21 9.9 11.1 0.24 9.7 7.7 1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein | Ref_seq=scaffold2269_contigs=7, transcript_loc=scaffold2269_contigs=7:24180-24521 Augustus predicted protein sequence Tobacco scaffold2269_contigs=7~24180-24521 Dimer_Tnp_hAT PF05699.9 g41571.t1 - 0.051 13.2 0 0.073 12.7 0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region | Ref_seq=scaffold990_contigs=6, transcript_loc=scaffold990_contigs=6:339587-339853 Augustus predicted protein sequence Tobacco scaffold990_contigs=6~339587-339853 RNF111_N PF15303.1 g125969.t1 - 0.61 9.5 7.5 0.35 10.3 4.2 1.4 1 1 0 1 1 1 0 E3 ubiquitin-protein ligase Arkadia N-terminus | Ref_seq=scaffold2784_contigs=1, transcript_loc=scaffold2784_contigs=1:102715-103241 Augustus predicted protein sequence Tobacco scaffold2784_contigs=1~102715-103241 DUF2894 PF11445.3 g75080.t1 - 0.0066 16.7 0.4 0.0099 16.1 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2894) | Ref_seq=scaffold1566_contigs=4, transcript_loc=scaffold1566_contigs=4:112856-113590 Augustus predicted protein sequence Tobacco scaffold1566_contigs=4~112856-113590 DUF2815 PF10991.3 g70260.t1 - 0.16 11.5 0 36 3.8 0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2815) | Ref_seq=scaffold1493_contigs=5, transcript_loc=scaffold1493_contigs=5:163851-164144 Augustus predicted protein sequence Tobacco scaffold1493_contigs=5~163851-164144 MH1 PF03165.11 g58163.t1 - 0.056 13.4 2.2 0.19 11.7 0.1 2.1 1 1 1 2 2 2 0 MH1 domain | Ref_seq=scaffold1267_contigs=12, transcript_loc=scaffold1267_contigs=12:128758-130012 Augustus predicted protein sequence Tobacco scaffold1267_contigs=12~128758-130012 DUF1645 PF07816.6 g62425.t1 - 0.036 14.5 0.2 0.039 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1645) | Ref_seq=scaffold1348_contigs=7, transcript_loc=scaffold1348_contigs=7:204882-205558 Augustus predicted protein sequence Tobacco scaffold1348_contigs=7~204882-205558 Spectrin PF00435.16 g120185.t1 - 0.00016 21.9 1.1 0.0021 18.3 0.2 2 1 1 1 2 2 2 2 Spectrin repeat | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:218950-219207 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~218950-219207 RVT_3 PF13456.1 g14904.t1 - 0.0001 21.9 0 0.00039 20.1 0 1.8 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold484_contigs=2, transcript_loc=scaffold484_contigs=2:4732-5019 Augustus predicted protein sequence Tobacco scaffold484_contigs=2~4732-5019 TAA-Trp-ring PF15401.1 g9030.t1 - 0.25 11.5 6.6 0.44 10.8 4.6 1.3 1 0 0 1 1 1 0 Tryptophan-ring motif of head of Trimeric autotransporter adhesin | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:106883-107278 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~106883-107278 DUF2389 PF09493.5 g4848.t1 - 0.039 14.2 0 0.066 13.4 0 1.3 1 0 0 1 1 1 0 Tryptophan-rich protein (DUF2389) | Ref_seq=scaffold265_contigs=4, transcript_loc=scaffold265_contigs=4:8529-8852 Augustus predicted protein sequence Tobacco scaffold265_contigs=4~8529-8852 GAGE PF05831.6 g20909.t1 - 0.45 10.6 2.9 23 5.1 0.2 2.5 2 0 0 2 2 2 0 GAGE protein | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:14824-16131 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~14824-16131 EF-hand_like PF09279.6 g121799.t1 - 0.0041 17 0.6 0.006 16.5 0.4 1.3 1 1 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:369760-370116 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~369760-370116 BUD22 PF09073.5 g74139.t1 - 0.83 8.6 7.2 1 8.3 5 1.1 1 0 0 1 1 1 0 BUD22 | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:606744-608525 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~606744-608525 Upf2 PF04050.9 g29056.t1 - 0.024 14.4 3 0.056 13.2 2.1 1.5 1 0 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold756_contigs=8, transcript_loc=scaffold756_contigs=8:1-1460 Augustus predicted protein sequence Tobacco scaffold756_contigs=8~1-1460 Sec31 PF11549.3 g87414.t1 - 0.0048 16.5 0 3.2 7.4 0 2.1 2 0 0 2 2 2 2 Protein transport protein SEC31 | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:39064-40031 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~39064-40031 SspN PF08177.6 g93955.t1 - 0.33 10.7 0 0.33 10.7 0 2.2 2 0 0 2 2 2 0 Small acid-soluble spore protein N family | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:265540-265788 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~265540-265788 RRN9 PF10680.4 g53949.t1 - 0.079 12.7 0 0.23 11.2 0 1.7 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:489362-490918 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~489362-490918 CAP_N PF01213.14 g21460.t1 - 0.089 12 1.7 0.09 12 1.2 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:521632-523169 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~521632-523169 VARLMGL PF14383.1 g16618.t1 - 0.00000085 28 0.1 0.0000019 26.9 0 1.5 1 0 0 1 1 1 1 DUF761-associated sequence motif | Ref_seq=scaffold522_contigs=18, transcript_loc=scaffold522_contigs=18:276238-276663 Augustus predicted protein sequence Tobacco scaffold522_contigs=18~276238-276663 DUF3348 PF11828.3 g13160.t1 - 0.039 13.3 0 0.049 13 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3348) | Ref_seq=scaffold442_contigs=14, transcript_loc=scaffold442_contigs=14:281080-281352 Augustus predicted protein sequence Tobacco scaffold442_contigs=14~281080-281352 Myosin_tail_1 PF01576.14 g126457.t1 - 0.0051 14.6 5.3 0.0065 14.2 3.7 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold2795_contigs=1, transcript_loc=scaffold2795_contigs=1:40988-41983 Augustus predicted protein sequence Tobacco scaffold2795_contigs=1~40988-41983 DotA PF11388.3 g93065.t1 - 0.0043 17 0 4.5 7.3 0 2.8 1 1 2 3 3 3 2 Phagosome trafficking protein DotA | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:642554-642844 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~642554-642844 Daxx PF03344.10 g93688.t1 - 0.095 11.1 11.2 0.097 11.1 7.8 1 1 0 0 1 1 1 0 Daxx Family | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:347053-347786 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~347053-347786 Streptin-Immun PF11083.3 g38920.t1 - 0.094 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein | Ref_seq=scaffold945_contigs=10, transcript_loc=scaffold945_contigs=10:267324-267785 Augustus predicted protein sequence Tobacco scaffold945_contigs=10~267324-267785 FIST_C PF10442.4 g18463.t1 - 0.044 13.7 0 0.09 12.7 0 1.5 2 0 0 2 2 2 0 FIST C domain | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:66958-68103 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~66958-68103 UPF0564 PF10595.4 g100031.t1 - 0.0037 16.2 0.3 0.0049 15.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0564 | Ref_seq=scaffold2183_contigs=22, transcript_loc=scaffold2183_contigs=22:320959-321887 Augustus predicted protein sequence Tobacco scaffold2183_contigs=22~320959-321887 ATG19_autophagy PF12744.2 g13546.t1 - 0.027 13.7 0.8 0.042 13.1 0.6 1.2 1 0 0 1 1 1 0 Autophagy protein Atg19, Atg8-binding | Ref_seq=scaffold449_contigs=4, transcript_loc=scaffold449_contigs=4:40312-42490 Augustus predicted protein sequence Tobacco scaffold449_contigs=4~40312-42490 EBV-NA3 PF05009.7 g30993.t1 - 0.045 12.9 2.1 0.051 12.8 1.5 1.1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold782_contigs=17, transcript_loc=scaffold782_contigs=17:355124-355838 Augustus predicted protein sequence Tobacco scaffold782_contigs=17~355124-355838 FH2 PF02181.18 g38554.t1 - 0.011 14.6 0.4 0.013 14.4 0.3 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold942_contigs=10, transcript_loc=scaffold942_contigs=10:41839-42102 Augustus predicted protein sequence Tobacco scaffold942_contigs=10~41839-42102 DUF1985 PF09331.6 g4588.t1 - 8.6E-009 35.3 0 0.000000009 35.2 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold258_contigs=4, transcript_loc=scaffold258_contigs=4:240969-241271 Augustus predicted protein sequence Tobacco scaffold258_contigs=4~240969-241271 Peptidase_M7 PF02031.11 g112241.t1 - 0.15 11.8 1.1 0.22 11.2 0.7 1.3 1 0 0 1 1 1 0 Streptomyces extracellular neutral proteinase (M7) family | Ref_seq=scaffold2606_contigs=15, transcript_loc=scaffold2606_contigs=15:54226-57965 Augustus predicted protein sequence Tobacco scaffold2606_contigs=15~54226-57965 zf-CCCH_2 PF14608.1 g81576.t1 - 0.066 13.2 0.2 0.13 12.3 0.2 1.5 1 0 0 1 1 1 0 Zinc finger C-x8-C-x5-C-x3-H type | Ref_seq=scaffold1730_contigs=8, transcript_loc=scaffold1730_contigs=8:251168-251504 Augustus predicted protein sequence Tobacco scaffold1730_contigs=8~251168-251504 Transposase_28 PF04195.7 g73876.t1 - 0.018 14.3 0 0.018 14.3 0 1.1 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold1550_contigs=16, transcript_loc=scaffold1550_contigs=16:107861-108148 Augustus predicted protein sequence Tobacco scaffold1550_contigs=16~107861-108148 CENP-B_dimeris PF09026.5 g53973.t1 - 0.93 9.7 4.4 1.2 9.4 3 1.2 1 0 0 1 1 1 0 Centromere protein B dimerisation domain | Ref_seq=scaffold1193_contigs=15, transcript_loc=scaffold1193_contigs=15:561579-561869 Augustus predicted protein sequence Tobacco scaffold1193_contigs=15~561579-561869 K1377 PF15352.1 g72674.t1 - 0.021 12.7 0.3 0.023 12.6 0.2 1.1 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy | Ref_seq=scaffold1517_contigs=17, transcript_loc=scaffold1517_contigs=17:382590-383105 Augustus predicted protein sequence Tobacco scaffold1517_contigs=17~382590-383105 Imm18 PF15566.1 g90290.t1 - 0.099 11.9 0 0.19 11 0 1.5 1 0 0 1 1 1 0 Immunity protein 18 | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:517062-517643 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~517062-517643 HR1 PF02185.11 g72879.t1 - 0.005 16.5 3.1 0.043 13.5 2.1 2 1 1 0 1 1 1 1 Hr1 repeat | Ref_seq=scaffold1525_contigs=4, transcript_loc=scaffold1525_contigs=4:72678-73105 Augustus predicted protein sequence Tobacco scaffold1525_contigs=4~72678-73105 DUF1189 PF06691.6 g11690.t1 - 0.00093 18.5 0.6 0.001 18.4 0.4 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1189) | Ref_seq=scaffold411_contigs=3, transcript_loc=scaffold411_contigs=3:55187-55471 Augustus predicted protein sequence Tobacco scaffold411_contigs=3~55187-55471 Tim54 PF11711.3 g55956.t1 - 0.015 13.9 3 0.018 13.6 2.1 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 | Ref_seq=scaffold1238_contigs=39, transcript_loc=scaffold1238_contigs=39:224828-225586 Augustus predicted protein sequence Tobacco scaffold1238_contigs=39~224828-225586 DUF972 PF06156.8 g49700.t1 - 0.028 14.7 1.1 0.03 14.6 0.8 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF972) | Ref_seq=scaffold1132_contigs=4, transcript_loc=scaffold1132_contigs=4:76141-76437 Augustus predicted protein sequence Tobacco scaffold1132_contigs=4~76141-76437 DUF566 PF04484.7 g34626.t1 - 0.51 9.7 10.5 0.12 11.8 0.6 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF566) | Ref_seq=scaffold858_contigs=4, transcript_loc=scaffold858_contigs=4:87904-88719 Augustus predicted protein sequence Tobacco scaffold858_contigs=4~87904-88719 AIG2 PF06094.7 g46872.t1 - 0.069 13.6 0 0.086 13.3 0 1.1 1 0 0 1 1 1 0 AIG2-like family | Ref_seq=scaffold1081_contigs=4, transcript_loc=scaffold1081_contigs=4:2526-2762 Augustus predicted protein sequence Tobacco scaffold1081_contigs=4~2526-2762 LZ_Tnp_IS481 PF13011.1 g71931.t1 - 0.15 12.4 0 0.16 12.2 0 1.1 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 | Ref_seq=scaffold1504_contigs=10, transcript_loc=scaffold1504_contigs=10:141522-141722 Augustus predicted protein sequence Tobacco scaffold1504_contigs=10~141522-141722 YkyB PF14177.1 g26795.t1 - 0.13 12.4 0.1 0.19 11.8 0 1.2 1 0 0 1 1 1 0 YkyB-like protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:322445-322756 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~322445-322756 DUF4219 PF13961.1 g116845.t1 - 0.00025 20.3 0 0.00038 19.7 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold2677_contigs=10, transcript_loc=scaffold2677_contigs=10:12734-14929 Augustus predicted protein sequence Tobacco scaffold2677_contigs=10~12734-14929 PMD PF10536.4 g50709.t1 - 0.0000011 27.9 0.1 0.0000015 27.4 0.1 1.3 1 1 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:62299-64474 Augustus predicted protein sequence Tobacco scaffold1144_contigs=4~62299-64474 NUC129 PF08157.6 g124911.t1 - 0.42 10.5 1.7 0.34 10.8 0.2 1.6 2 0 0 2 2 2 0 NUC129 domain | Ref_seq=scaffold2765_contigs=1, transcript_loc=scaffold2765_contigs=1:161315-161652 Augustus predicted protein sequence Tobacco scaffold2765_contigs=1~161315-161652 Baculo_VP39 PF04501.7 g89858.t1 - 0.032 13.2 0.3 0.037 13 0.2 1.1 1 0 0 1 1 1 0 Baculovirus major capsid protein VP39 | Ref_seq=scaffold1955_contigs=3, transcript_loc=scaffold1955_contigs=3:11365-12038 Augustus predicted protein sequence Tobacco scaffold1955_contigs=3~11365-12038 DUF3281 PF11685.3 g93526.t1 - 0.062 12.4 0 0.071 12.2 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3281) | Ref_seq=scaffold2023_contigs=13, transcript_loc=scaffold2023_contigs=13:42447-43020 Augustus predicted protein sequence Tobacco scaffold2023_contigs=13~42447-43020 Kinesin-relat_1 PF12711.2 g58383.t1 - 0.012 15.9 2.8 0.019 15.3 1.9 1.3 1 0 0 1 1 1 0 Kinesin motor | Ref_seq=scaffold1269_contigs=10, transcript_loc=scaffold1269_contigs=10:366516-366803 Augustus predicted protein sequence Tobacco scaffold1269_contigs=10~366516-366803 X PF00739.14 g23171.t1 - 0.013 15.3 0 0.015 15.2 0 1.1 1 0 0 1 1 1 0 Trans-activation protein X | Ref_seq=scaffold638_contigs=8, transcript_loc=scaffold638_contigs=8:29982-30287 Augustus predicted protein sequence Tobacco scaffold638_contigs=8~29982-30287 DUF4525 PF15027.1 g411.t1 - 0.1 12.1 0 0.1 12.1 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:102434-103379 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~102434-103379 BMC PF00936.14 g88687.t1 - 0.073 12.7 0.2 0.2 11.3 0 1.8 1 1 0 1 1 1 0 BMC domain | Ref_seq=scaffold1933_contigs=6, transcript_loc=scaffold1933_contigs=6:165217-165674 Augustus predicted protein sequence Tobacco scaffold1933_contigs=6~165217-165674 DUF678 PF05077.7 g110677.t1 - 0.039 13.9 0.1 0.047 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF678) | Ref_seq=scaffold2568_contigs=17, transcript_loc=scaffold2568_contigs=17:229797-230054 Augustus predicted protein sequence Tobacco scaffold2568_contigs=17~229797-230054 DUF1979 PF09322.5 g44837.t1 - 0.11 12.1 0 0.2 11.3 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) | Ref_seq=scaffold1040_contigs=3, transcript_loc=scaffold1040_contigs=3:292492-293668 Augustus predicted protein sequence Tobacco scaffold1040_contigs=3~292492-293668 CCDC155 PF14662.1 g94986.t1 - 0.00000056 29.3 3.6 0.00000069 29 2.5 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold2050_contigs=3, transcript_loc=scaffold2050_contigs=3:50621-51192 Augustus predicted protein sequence Tobacco scaffold2050_contigs=3~50621-51192 Bap31 PF05529.7 g30212.t1 - 0.76 9.2 3.2 1.1 8.7 2.3 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like | Ref_seq=scaffold773_contigs=6, transcript_loc=scaffold773_contigs=6:47344-48128 Augustus predicted protein sequence Tobacco scaffold773_contigs=6~47344-48128 DUF1032 PF06278.6 g82001.t1 - 0.044 12.2 0.3 0.045 12.2 0.2 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:436150-436505 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~436150-436505 PLDc_N PF13396.1 g68603.t1 - 0.0044 16.6 3.3 1.9 8.2 0 3 3 0 0 3 3 3 2 Phospholipase_D-nuclease N-terminal | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:561779-562730 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~561779-562730 YIEGIA PF14045.1 g49874.t1 - 0.012 14.3 0.1 0.012 14.2 0.1 1.1 1 0 0 1 1 1 0 YIEGIA protein | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:293940-294224 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~293940-294224 Casc1 PF12366.3 g39270.t1 - 0.057 12.9 3 0.067 12.6 2.1 1.1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 | Ref_seq=scaffold949_contigs=2, transcript_loc=scaffold949_contigs=2:265214-265641 Augustus predicted protein sequence Tobacco scaffold949_contigs=2~265214-265641 HNH_4 PF13395.1 g129380.t1 - 0.00011 21.7 0.1 0.42 10.2 0 2.3 1 1 1 2 2 2 2 HNH endonuclease | Ref_seq=scaffold2946_contigs=1, transcript_loc=scaffold2946_contigs=1:1589-2424 Augustus predicted protein sequence Tobacco scaffold2946_contigs=1~1589-2424 zf-CCHC PF00098.18 g41993.t1 - 0.013 15.4 1.8 0.024 14.5 1.3 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold998_contigs=1, transcript_loc=scaffold998_contigs=1:8100-9020 Augustus predicted protein sequence Tobacco scaffold998_contigs=1~8100-9020 MRF_C1 PF13887.1 g39609.t1 - 0.13 11.3 0.3 2.7 7 0 2.4 2 0 0 2 2 2 0 Myelin gene regulatory factor -C-terminal domain 1 | Ref_seq=scaffold958_contigs=5, transcript_loc=scaffold958_contigs=5:163968-164860 Augustus predicted protein sequence Tobacco scaffold958_contigs=5~163968-164860 DUF4372 PF14294.1 g91560.t1 - 0.061 13.2 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4372) | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:239641-241828 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~239641-241828 DUF1003 PF06210.6 g92814.t1 - 0.25 11.3 2 0.29 11 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:299773-300000 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~299773-300000 Transposase_28 PF04195.7 g47704.t1 - 0.0033 16.7 0.1 0.0042 16.3 0.1 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:596096-596921 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~596096-596921 SR-25 PF10500.4 g24902.t1 - 1.1 8.6 3.9 1.4 8.3 2.7 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein | Ref_seq=scaffold680_contigs=7, transcript_loc=scaffold680_contigs=7:146039-146401 Augustus predicted protein sequence Tobacco scaffold680_contigs=7~146039-146401 CDC45 PF02724.9 g63229.t1 - 0.0039 15.3 9.2 0.004 15.2 6.4 1.3 1 0 0 1 1 1 1 CDC45-like protein | Ref_seq=scaffold1370_contigs=2, transcript_loc=scaffold1370_contigs=2:125115-125885 Augustus predicted protein sequence Tobacco scaffold1370_contigs=2~125115-125885 LHC PF00556.15 g66474.t1 - 0.11 12.3 0.3 0.24 11.3 0.2 1.5 1 0 0 1 1 1 0 Antenna complex alpha/beta subunit | Ref_seq=scaffold1440_contigs=6, transcript_loc=scaffold1440_contigs=6:190615-190908 Augustus predicted protein sequence Tobacco scaffold1440_contigs=6~190615-190908 DUF1154 PF06631.6 g89720.t1 - 0.036 13.7 1.2 0.084 12.5 0.2 2 2 0 0 2 2 2 0 Protein of unknown function (DUF1154) | Ref_seq=scaffold1951_contigs=6, transcript_loc=scaffold1951_contigs=6:229619-229882 Augustus predicted protein sequence Tobacco scaffold1951_contigs=6~229619-229882 Transposase_28 PF04195.7 g26724.t1 - 0.0023 17.2 3.4 0.01 15.1 2.3 2 1 1 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:212125-212778 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~212125-212778 ATHILA PF03078.10 g56700.t1 - 0.00000031 29.3 0.1 0.00000035 29.1 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:688325-688582 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~688325-688582 Endosulfine PF04667.12 g101945.t1 - 0.028 14.3 0.2 0.036 14 0.2 1.3 1 0 0 1 1 1 0 cAMP-regulated phosphoprotein/endosulfine conserved region | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:158185-158727 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~158185-158727 A_amylase_inhib PF01356.14 g2591.t1 - 0.078 12.7 1.3 0.12 12.1 0.8 1.4 1 1 0 1 1 1 0 Alpha amylase inhibitor | Ref_seq=scaffold214_contigs=4, transcript_loc=scaffold214_contigs=4:5270-5485 Augustus predicted protein sequence Tobacco scaffold214_contigs=4~5270-5485 EF-hand_like PF09279.6 g102092.t1 - 0.0091 16 0.8 0.017 15.1 0.6 1.6 1 1 0 1 1 1 1 Phosphoinositide-specific phospholipase C, efhand-like | Ref_seq=scaffold2231_contigs=8, transcript_loc=scaffold2231_contigs=8:67895-68335 Augustus predicted protein sequence Tobacco scaffold2231_contigs=8~67895-68335 Dehydratase_SU PF02287.10 g55403.t1 - 0.054 13.2 0 0.066 12.9 0 1.1 1 0 0 1 1 1 0 Dehydratase small subunit | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:33317-33872 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~33317-33872 Cytokin-bind PF09265.5 g1419.t1 - 0.19 10.8 1.5 0.24 10.5 1 1.1 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:96054-96344 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~96054-96344 Polysacc_deac_1 PF01522.16 g59444.t1 - 0.069 12.7 0 0.09 12.4 0 1.2 1 0 0 1 1 1 0 Polysaccharide deacetylase | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:150020-151458 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~150020-151458 UPF0547 PF10571.4 g118896.t1 - 0.015 14.9 1.6 0.052 13.2 1.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:331712-332860 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~331712-332860 DUF664 PF04978.7 g59794.t1 - 0.12 12.5 0.1 0.17 12 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF664) | Ref_seq=scaffold1299_contigs=5, transcript_loc=scaffold1299_contigs=5:198350-199155 Augustus predicted protein sequence Tobacco scaffold1299_contigs=5~198350-199155 DUF1347 PF07079.6 g118403.t1 - 0.077 11.1 0.1 0.33 9 0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:621425-622078 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~621425-622078 zf-met2 PF12907.2 g109458.t1 - 0.0000095 25.4 0.9 0.075 13 0.2 2.7 2 0 0 2 2 2 2 Zinc-binding | Ref_seq=scaffold2510_contigs=23, transcript_loc=scaffold2510_contigs=23:26117-26893 Augustus predicted protein sequence Tobacco scaffold2510_contigs=23~26117-26893 Dor1 PF04124.7 g86699.t1 - 0.00071 18.1 2.3 0.00087 17.8 1.6 1.1 1 0 0 1 1 1 1 Dor1-like family | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:220867-221636 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~220867-221636 DUF1985 PF09331.6 g51358.t1 - 0.000000021 34 0.1 0.000000048 32.9 0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1985) | Ref_seq=scaffold1153_contigs=2, transcript_loc=scaffold1153_contigs=2:134416-136041 Augustus predicted protein sequence Tobacco scaffold1153_contigs=2~134416-136041 OsmC PF02566.14 g32632.t1 - 0.033 14.3 0 0.045 13.9 0 1.2 1 0 0 1 1 1 0 OsmC-like protein | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:525203-525534 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~525203-525534 DUF3839 PF12943.2 g116902.t1 - 0.014 14.5 0.7 0.017 14.2 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3839) | Ref_seq=scaffold2678_contigs=5, transcript_loc=scaffold2678_contigs=5:56566-56892 Augustus predicted protein sequence Tobacco scaffold2678_contigs=5~56566-56892 zf-CCHC PF00098.18 g40746.t1 - 0.00012 21.8 0.7 0.00018 21.2 0.5 1.3 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold980_contigs=13, transcript_loc=scaffold980_contigs=13:469420-470833 Augustus predicted protein sequence Tobacco scaffold980_contigs=13~469420-470833 Cwf_Cwc_15 PF04889.7 g50037.t1 - 0.01 15.5 18.1 0.012 15.3 12.5 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:105822-109875 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~105822-109875 MarC PF01914.12 g87625.t1 - 0.079 12 0.1 0.087 11.9 0.1 1 1 0 0 1 1 1 0 MarC family integral membrane protein | Ref_seq=scaffold1889_contigs=7, transcript_loc=scaffold1889_contigs=7:101209-101688 Augustus predicted protein sequence Tobacco scaffold1889_contigs=7~101209-101688 Bd3614_N PF14442.1 g20617.t1 - 0.33 10.9 1.5 0.83 9.6 1.3 1.5 2 0 0 2 2 2 0 Bd3614-like deaminase N-terminal | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:557132-557816 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~557132-557816 RVP_2 PF08284.6 g36641.t1 - 0.15 11.9 0 0.28 11.1 0 1.4 1 1 0 1 1 1 0 Retroviral aspartyl protease | Ref_seq=scaffold893_contigs=2, transcript_loc=scaffold893_contigs=2:167095-167415 Augustus predicted protein sequence Tobacco scaffold893_contigs=2~167095-167415 Prominin PF05478.6 g52434.t1 - 0.016 12.7 0.2 0.022 12.3 0.1 1.2 1 0 0 1 1 1 0 Prominin | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:267783-268328 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~267783-268328 DUF3337 PF11816.3 g97170.t1 - 0.051 12.9 0.7 0.054 12.8 0.5 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) | Ref_seq=scaffold2128_contigs=9, transcript_loc=scaffold2128_contigs=9:191706-192092 Augustus predicted protein sequence Tobacco scaffold2128_contigs=9~191706-192092 DUF3381 PF11861.3 g130445.t1 - 0.0089 15.5 0 0.0091 15.5 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3381) | Ref_seq=scaffold4540_contigs=1, transcript_loc=scaffold4540_contigs=1:61-315 Augustus predicted protein sequence Tobacco scaffold4540_contigs=1~61-315 TIG PF01833.19 g17033.t1 - 0.037 14 0.3 0.062 13.3 0.2 1.3 1 0 0 1 1 1 0 IPT/TIG domain | Ref_seq=scaffold525_contigs=12, transcript_loc=scaffold525_contigs=12:323494-325133 Augustus predicted protein sequence Tobacco scaffold525_contigs=12~323494-325133 UBN2 PF14223.1 g412.t1 - 0.000011 25.1 0.3 0.000034 23.5 0.1 1.8 2 1 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:103546-104239 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~103546-104239 DUF2743 PF10899.3 g14492.t1 - 0.035 13.4 0.7 0.042 13.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) | Ref_seq=scaffold476_contigs=10, transcript_loc=scaffold476_contigs=10:7092-7397 Augustus predicted protein sequence Tobacco scaffold476_contigs=10~7092-7397 ATHILA PF03078.10 g41058.t1 - 0.000011 24.2 0 0.000013 23.9 0 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:569607-570032 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~569607-570032 DUF3762 PF12591.3 g92854.t1 - 0.18 11.8 0.1 0.18 11.8 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3762) | Ref_seq=scaffold1997_contigs=2, transcript_loc=scaffold1997_contigs=2:54126-57780 Augustus predicted protein sequence Tobacco scaffold1997_contigs=2~54126-57780 LURAP PF14854.1 g36984.t1 - 0.072 12.8 1.3 6.2 6.5 0.2 2.4 1 1 1 2 2 2 0 Leucine rich adaptor protein | Ref_seq=scaffold907_contigs=7, transcript_loc=scaffold907_contigs=7:47628-48244 Augustus predicted protein sequence Tobacco scaffold907_contigs=7~47628-48244 UPF0561 PF10573.4 g30687.t1 - 0.023 14.5 4.3 0.027 14.3 3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:57462-58214 Augustus predicted protein sequence Tobacco scaffold778_contigs=11~57462-58214 DUF3590 PF12148.3 g59932.t1 - 0.89 9.2 2.6 5.1 6.7 0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3590) | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:201952-204455 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~201952-204455 PMD PF10536.4 g79784.t1 - 0.000022 23.6 0.2 0.000026 23.3 0.1 1.1 1 0 0 1 1 1 1 Plant mobile domain | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:163520-164983 Augustus predicted protein sequence Tobacco scaffold1702_contigs=7~163520-164983 Potex_coat PF06184.6 g72245.t1 - 0.044 13.1 0 0.054 12.8 0 1.1 1 0 0 1 1 1 0 Potexvirus coat protein | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:601534-602057 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~601534-602057 zf-BED PF02892.10 g41780.t1 - 0.00019 21.1 0.7 0.00036 20.2 0.5 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold993_contigs=5, transcript_loc=scaffold993_contigs=5:198761-199033 Augustus predicted protein sequence Tobacco scaffold993_contigs=5~198761-199033 DUF4228 PF14009.1 g48607.t1 - 0.00000016 31.6 0.5 0.000089 22.7 0.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4228) | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1184312-1184635 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~1184312-1184635 Fibrinogen_BP PF08017.6 g106285.t1 - 0.23 9.6 0.5 0.28 9.3 0.3 1.1 1 0 0 1 1 1 0 Fibrinogen binding protein | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:92518-93912 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~92518-93912 rve_3 PF13683.1 g34252.t1 - 0.06 12.8 0 0.15 11.6 0 1.7 1 1 0 1 1 1 0 Integrase core domain | Ref_seq=scaffold848_contigs=10, transcript_loc=scaffold848_contigs=10:105492-106920 Augustus predicted protein sequence Tobacco scaffold848_contigs=10~105492-106920 HALZ PF02183.13 g114628.t1 - 0.029 14 3.3 0.16 11.6 0.7 2.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:111323-111763 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~111323-111763 DUF217 PF02697.9 g129929.t1 - 0.032 14.4 3 0.035 14.3 2.1 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 | Ref_seq=scaffold3215_contigs=1, transcript_loc=scaffold3215_contigs=1:1801-2001 Augustus predicted protein sequence Tobacco scaffold3215_contigs=1~1801-2001 Dimer_Tnp_hAT PF05699.9 g108133.t1 - 0.00000036 29.7 0 0.00000054 29.1 0 1.3 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region | Ref_seq=scaffold2434_contigs=40, transcript_loc=scaffold2434_contigs=40:501095-501383 Augustus predicted protein sequence Tobacco scaffold2434_contigs=40~501095-501383 GAT PF03127.9 g116521.t1 - 0.0053 16.7 0.5 0.0073 16.2 0.4 1.2 1 0 0 1 1 1 1 GAT domain | Ref_seq=scaffold2670_contigs=15, transcript_loc=scaffold2670_contigs=15:303843-304231 Augustus predicted protein sequence Tobacco scaffold2670_contigs=15~303843-304231 bZIP_2 PF07716.10 g123182.t1 - 0.015 15.1 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Basic region leucine zipper | Ref_seq=scaffold2755_contigs=10, transcript_loc=scaffold2755_contigs=10:32125-32385 Augustus predicted protein sequence Tobacco scaffold2755_contigs=10~32125-32385 SOCS PF12610.3 g44414.t1 - 0.055 13.7 10.2 0.29 11.4 1.1 2.2 1 1 1 2 2 2 0 Suppressor of cytokine signalling | Ref_seq=scaffold1037_contigs=11, transcript_loc=scaffold1037_contigs=11:17835-19861 Augustus predicted protein sequence Tobacco scaffold1037_contigs=11~17835-19861 Curto_V2 PF07325.6 g1655.t1 - 0.083 12.5 0.8 0.13 11.9 0.6 1.2 1 0 0 1 1 1 0 Curtovirus V2 protein | Ref_seq=scaffold191_contigs=2, transcript_loc=scaffold191_contigs=2:58109-59968 Augustus predicted protein sequence Tobacco scaffold191_contigs=2~58109-59968 tRNA_U5-meth_tr PF05958.6 g66242.t1 - 0.0086 14.7 0 0.0096 14.6 0 1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:42079-42354 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~42079-42354 FERM_M PF00373.13 g70852.t1 - 0.023 14.8 0.5 0.032 14.3 0.3 1.2 1 0 0 1 1 1 0 FERM central domain | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:289161-289502 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~289161-289502 Orn_Arg_deC_N PF02784.11 g20944.t1 - 0.022 13.9 0.1 0.029 13.5 0 1.1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:116541-116825 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~116541-116825 MUG2_C PF08593.5 g77147.t1 - 0.26 11.5 2.3 3.5 7.9 0 2.6 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:15678-16019 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~15678-16019 DHFR_1 PF00186.14 g8822.t1 - 0.029 13.9 0 0.041 13.4 0 1.2 1 0 0 1 1 1 0 Dihydrofolate reductase | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:247041-247597 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~247041-247597 zf-CCHC PF00098.18 g71119.t1 - 0.00000054 29.2 4.5 0.00000085 28.6 3.1 1.4 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:62245-62457 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~62245-62457 DUF329 PF03884.9 g114679.t1 - 0.06 12.9 0.4 0.085 12.4 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF329) | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:189990-190202 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~189990-190202 DUF3866 PF12982.2 g33377.t1 - 0.019 13.9 0.6 0.028 13.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3866) | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:139844-140314 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~139844-140314 zf-BED PF02892.10 g48221.t1 - 0.0079 15.9 2.1 0.018 14.8 1.4 1.6 1 1 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold1105_contigs=3, transcript_loc=scaffold1105_contigs=3:94-972 Augustus predicted protein sequence Tobacco scaffold1105_contigs=3~94-972 IncA PF04156.9 g60748.t1 - 0.0000064 25.8 5.5 0.0000099 25.2 3.8 1.3 1 0 0 1 1 1 1 IncA protein | Ref_seq=scaffold1317_contigs=17, transcript_loc=scaffold1317_contigs=17:104204-104743 Augustus predicted protein sequence Tobacco scaffold1317_contigs=17~104204-104743 HTH_39 PF14090.1 g47808.t1 - 0.022 14.2 0.1 0.024 14 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:183938-184162 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~183938-184162 zf-CCHC PF00098.18 g15889.t1 - 0.00014 21.5 1 0.00029 20.6 0.7 1.6 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold506_contigs=3, transcript_loc=scaffold506_contigs=3:10907-12191 Augustus predicted protein sequence Tobacco scaffold506_contigs=3~10907-12191 BIV_Env PF05858.7 g127934.t1 - 0.15 9.9 0.9 0.16 9.9 0.6 1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) | Ref_seq=scaffold2842_contigs=1, transcript_loc=scaffold2842_contigs=1:44110-44405 Augustus predicted protein sequence Tobacco scaffold2842_contigs=1~44110-44405 BLVR PF06375.6 g34482.t1 - 0.082 12.7 8.8 0.088 12.6 6.1 1.2 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) | Ref_seq=scaffold854_contigs=5, transcript_loc=scaffold854_contigs=5:133245-133796 Augustus predicted protein sequence Tobacco scaffold854_contigs=5~133245-133796 SmpB PF01668.13 g15162.t1 - 0.0078 16 0 0.01 15.5 0 1.2 1 0 0 1 1 1 1 SmpB protein | Ref_seq=scaffold493_contigs=4, transcript_loc=scaffold493_contigs=4:92811-93089 Augustus predicted protein sequence Tobacco scaffold493_contigs=4~92811-93089 Transposase_24 PF03004.9 g124542.t1 - 0.00024 20.9 0.3 0.00024 20.9 0.2 1.8 2 0 0 2 2 2 1 Plant transposase (Ptta/En/Spm family) | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:386711-388278 Augustus predicted protein sequence Tobacco scaffold2762_contigs=5~386711-388278 FA_FANCE PF11510.3 g36191.t1 - 0.037 13.1 1.8 0.054 12.6 1.2 1.4 1 1 0 1 1 1 0 Fanconi Anaemia group E protein FANCE | Ref_seq=scaffold880_contigs=9, transcript_loc=scaffold880_contigs=9:460034-461109 Augustus predicted protein sequence Tobacco scaffold880_contigs=9~460034-461109 DUF349 PF03993.7 g94692.t1 - 0.63 10.2 4.5 1.4 9.1 3.2 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF349) | Ref_seq=scaffold2043_contigs=7, transcript_loc=scaffold2043_contigs=7:315763-316724 Augustus predicted protein sequence Tobacco scaffold2043_contigs=7~315763-316724 Mre11_DNA_bind PF04152.9 g50072.t1 - 0.038 13.8 0.6 0.045 13.5 0.4 1 1 0 0 1 1 1 0 Mre11 DNA-binding presumed domain | Ref_seq=scaffold1134_contigs=12, transcript_loc=scaffold1134_contigs=12:214102-214398 Augustus predicted protein sequence Tobacco scaffold1134_contigs=12~214102-214398 Glycos_transf_1 PF00534.15 g12500.t1 - 0.1 12 0 0.15 11.4 0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 | Ref_seq=scaffold428_contigs=8, transcript_loc=scaffold428_contigs=8:21072-21939 Augustus predicted protein sequence Tobacco scaffold428_contigs=8~21072-21939 DUF2894 PF11445.3 g24861.t1 - 0.05 13.8 0.7 0.062 13.5 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold679_contigs=3, transcript_loc=scaffold679_contigs=3:11283-11720 Augustus predicted protein sequence Tobacco scaffold679_contigs=3~11283-11720 DegS PF05384.6 g91059.t1 - 0.0047 16.1 0.1 0.0052 16 0.1 1.1 1 0 0 1 1 1 1 Sensor protein DegS | Ref_seq=scaffold1970_contigs=14, transcript_loc=scaffold1970_contigs=14:34885-35115 Augustus predicted protein sequence Tobacco scaffold1970_contigs=14~34885-35115 ESX-1_EspG PF14011.1 g78106.t1 - 0.095 11.9 0 0.12 11.6 0 1 1 0 0 1 1 1 0 EspG family | Ref_seq=scaffold1639_contigs=14, transcript_loc=scaffold1639_contigs=14:427703-427924 Augustus predicted protein sequence Tobacco scaffold1639_contigs=14~427703-427924 XkdW PF09636.5 g101123.t1 - 0.013 15.4 1 0.016 15 0.7 1.3 1 1 0 1 1 1 0 XkdW protein | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:105986-106464 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~105986-106464 Sec5 PF15469.1 g54218.t1 - 0.022 14.4 0.7 0.035 13.8 0.5 1.3 1 0 0 1 1 1 0 Exocyst complex component Sec5 | Ref_seq=scaffold1205_contigs=6, transcript_loc=scaffold1205_contigs=6:31979-32822 Augustus predicted protein sequence Tobacco scaffold1205_contigs=6~31979-32822 FERM_C PF09380.5 g4843.t1 - 0.084 13 0.5 6.9 6.9 0.1 2.5 1 1 1 2 2 2 0 FERM C-terminal PH-like domain | Ref_seq=scaffold264_contigs=10, transcript_loc=scaffold264_contigs=10:179429-181434 Augustus predicted protein sequence Tobacco scaffold264_contigs=10~179429-181434 CAF-1_p150 PF11600.3 g45010.t1 - 0.00017 21 33.3 0.00018 20.9 23.1 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:190002-190412 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~190002-190412 DUF3284 PF11687.3 g28549.t1 - 0.049 13.3 0.3 0.075 12.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3284) | Ref_seq=scaffold748_contigs=11, transcript_loc=scaffold748_contigs=11:175611-175898 Augustus predicted protein sequence Tobacco scaffold748_contigs=11~175611-175898 IF2_assoc PF08364.6 g103822.t1 - 0.17 11.9 1.4 55 3.8 0 3.4 3 0 0 3 3 3 0 Bacterial translation initiation factor IF-2 associated region | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:144791-145224 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~144791-145224 DUF2256 PF10013.4 g33135.t1 - 0.061 13 0.4 0.089 12.5 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:498126-498332 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~498126-498332 Dscam_C PF12355.3 g20435.t1 - 0.012 15.9 0.9 0.014 15.6 0.6 1.2 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:273935-274386 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~273935-274386 RCSD PF05177.7 g12631.t1 - 0.13 12.7 0.1 0.16 12.4 0.1 1.1 1 0 0 1 1 1 0 RCSD region | Ref_seq=scaffold429_contigs=9, transcript_loc=scaffold429_contigs=9:95906-96631 Augustus predicted protein sequence Tobacco scaffold429_contigs=9~95906-96631 Adaptin_binding PF10199.4 g89373.t1 - 0.3 11.3 6.2 0.54 10.5 4.3 1.4 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:4277-4733 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~4277-4733 Spc24 PF08286.6 g67638.t1 - 0.07 12.8 0.7 3.2 7.4 0.1 2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 | Ref_seq=scaffold1452_contigs=4, transcript_loc=scaffold1452_contigs=4:17253-17833 Augustus predicted protein sequence Tobacco scaffold1452_contigs=4~17253-17833 Decorin_bind PF02352.10 g95077.t1 - 0.0063 16.5 0.3 0.36 10.8 0.1 2.1 1 1 1 2 2 2 2 Decorin binding protein | Ref_seq=scaffold2052_contigs=6, transcript_loc=scaffold2052_contigs=6:241831-242543 Augustus predicted protein sequence Tobacco scaffold2052_contigs=6~241831-242543 DUF3736 PF12540.3 g8321.t1 - 0.07 13.3 2.7 0.09 13 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3736) | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:174100-174441 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~174100-174441 RRM_5 PF13893.1 g125239.t1 - 0.089 12.6 0 0.11 12.3 0 1.3 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | Ref_seq=scaffold2769_contigs=1, transcript_loc=scaffold2769_contigs=1:120898-121158 Augustus predicted protein sequence Tobacco scaffold2769_contigs=1~120898-121158 DUF605 PF04652.11 g459.t1 - 1.2 8.4 9.7 1.5 8.1 6.7 1.1 1 0 0 1 1 1 0 Vta1 like | Ref_seq=scaffold17_contigs=4, transcript_loc=scaffold17_contigs=4:189350-191655 Augustus predicted protein sequence Tobacco scaffold17_contigs=4~189350-191655 zinc_ribbon_4 PF13717.1 g97221.t1 - 0.069 12.8 0 0.14 11.8 0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:33903-34277 Augustus predicted protein sequence Tobacco scaffold2130_contigs=1~33903-34277 Toxin_19 PF08088.7 g111727.t1 - 0.42 10.5 8.1 3.8 7.4 0.7 2.4 2 0 0 2 2 2 0 Conotoxin I-superfamily | Ref_seq=scaffold2592_contigs=44, transcript_loc=scaffold2592_contigs=44:65967-66454 Augustus predicted protein sequence Tobacco scaffold2592_contigs=44~65967-66454 MBOAT_2 PF13813.1 g79883.t1 - 0.077 13 0 0.089 12.8 0 1.2 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:97414-97686 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~97414-97686 RE_Eco29kI PF09517.5 g21594.t1 - 0.13 11.6 0 0.13 11.5 0 1.1 1 0 0 1 1 1 0 Eco29kI restriction endonuclease | Ref_seq=scaffold597_contigs=5, transcript_loc=scaffold597_contigs=5:111867-112103 Augustus predicted protein sequence Tobacco scaffold597_contigs=5~111867-112103 ATHILA PF03078.10 g24768.t1 - 0.0000035 25.8 0 0.0000043 25.5 0 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold676_contigs=2, transcript_loc=scaffold676_contigs=2:43278-43996 Augustus predicted protein sequence Tobacco scaffold676_contigs=2~43278-43996 Asp-B-Hydro_N PF05279.6 g107756.t1 - 0.12 12.1 0.4 0.13 12 0.3 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region | Ref_seq=scaffold2408_contigs=11, transcript_loc=scaffold2408_contigs=11:269597-269881 Augustus predicted protein sequence Tobacco scaffold2408_contigs=11~269597-269881 DUF2407_C PF13373.1 g77183.t1 - 0.14 12 0.3 0.17 11.7 0.2 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain | Ref_seq=scaffold1627_contigs=5, transcript_loc=scaffold1627_contigs=5:65382-65873 Augustus predicted protein sequence Tobacco scaffold1627_contigs=5~65382-65873 GRP PF07172.6 g18073.t1 - 0.0082 16.5 0 0.012 16 0 1.3 1 0 0 1 1 1 1 Glycine rich protein family | Ref_seq=scaffold541_contigs=3, transcript_loc=scaffold541_contigs=3:102845-103060 Augustus predicted protein sequence Tobacco scaffold541_contigs=3~102845-103060 NTR2 PF15458.1 g80233.t1 - 0.00089 18.5 1.1 0.0012 18.2 0.8 1.1 1 0 0 1 1 1 1 Nineteen complex-related protein 2 | Ref_seq=scaffold1712_contigs=1, transcript_loc=scaffold1712_contigs=1:47663-48037 Augustus predicted protein sequence Tobacco scaffold1712_contigs=1~47663-48037 Cluap1 PF10234.4 g50704.t1 - 0.15 11.2 10.3 0.22 10.7 7.2 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 | Ref_seq=scaffold1144_contigs=4, transcript_loc=scaffold1144_contigs=4:51140-51805 Augustus predicted protein sequence Tobacco scaffold1144_contigs=4~51140-51805 Axin_b-cat_bind PF08833.5 g85931.t1 - 2.6 7.8 5.3 0.7 9.6 0.6 2.1 2 1 0 2 2 2 0 Axin beta-catenin binding domain | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:172829-173080 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~172829-173080 Rod_cone_degen PF15201.1 g4963.t1 - 0.014 15.2 2.2 0.95 9.3 0.1 3.4 3 1 1 4 4 4 0 Progressive rod-cone degeneration | Ref_seq=scaffold269_contigs=8, transcript_loc=scaffold269_contigs=8:36634-39621 Augustus predicted protein sequence Tobacco scaffold269_contigs=8~36634-39621 Tachykinin PF02202.11 g13354.t1 - 0.057 13.1 0.3 0.15 11.8 0.2 1.7 1 0 0 1 1 1 0 Tachykinin family | Ref_seq=scaffold446_contigs=6, transcript_loc=scaffold446_contigs=6:27051-27266 Augustus predicted protein sequence Tobacco scaffold446_contigs=6~27051-27266 RNase_H2-Ydr279 PF09468.5 g124199.t1 - 0.11 11.7 4.9 0.11 11.6 3.4 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:1552875-1553249 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~1552875-1553249 QLQ PF08880.6 g8354.t1 - 0.1 12 0.9 0.16 11.4 0.1 1.8 2 0 0 2 2 2 0 QLQ | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:301290-301835 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~301290-301835 HAMP PF00672.20 g126185.t1 - 0.14 12.3 0.1 0.18 11.9 0.1 1.2 1 0 0 1 1 1 0 HAMP domain | Ref_seq=scaffold2789_contigs=1, transcript_loc=scaffold2789_contigs=1:28379-28639 Augustus predicted protein sequence Tobacco scaffold2789_contigs=1~28379-28639 DUF3546 PF12066.3 g107854.t1 - 0.081 12.9 3.7 0.13 12.2 2.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3546) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:324530-326804 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~324530-326804 INCA1 PF15142.1 g79703.t1 - 0.00096 18.9 0 0.41 10.4 0 2.1 2 0 0 2 2 2 2 INCA1 | Ref_seq=scaffold1701_contigs=25, transcript_loc=scaffold1701_contigs=25:45738-46627 Augustus predicted protein sequence Tobacco scaffold1701_contigs=25~45738-46627 CAP_N PF01213.14 g27529.t1 - 0.13 11.4 1.2 0.15 11.2 0.9 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold727_contigs=8, transcript_loc=scaffold727_contigs=8:249860-250135 Augustus predicted protein sequence Tobacco scaffold727_contigs=8~249860-250135 RVT_3 PF13456.1 g49596.t1 - 0.01 15.5 0 0.013 15.2 0 1.2 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold1129_contigs=1, transcript_loc=scaffold1129_contigs=1:45118-45321 Augustus predicted protein sequence Tobacco scaffold1129_contigs=1~45118-45321 CopK PF11525.3 g109056.t1 - 0.071 12.7 0.1 0.12 12 0.1 1.3 1 0 0 1 1 1 0 Copper resistance protein K | Ref_seq=scaffold2482_contigs=7, transcript_loc=scaffold2482_contigs=7:6652-6939 Augustus predicted protein sequence Tobacco scaffold2482_contigs=7~6652-6939 Sirohm_synth_C PF14823.1 g1334.t1 - 0.039 13.2 0.4 0.062 12.6 0.3 1.3 1 0 0 1 1 1 0 Sirohaem biosynthesis protein C-terminal | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:5499-5810 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~5499-5810 DUF155 PF02582.9 g7149.t1 - 0.02 14.8 0.7 3.7 7.4 0 2.1 2 0 0 2 2 2 0 Uncharacterised ACR, YagE family COG1723 | Ref_seq=scaffold308_contigs=4, transcript_loc=scaffold308_contigs=4:165991-166478 Augustus predicted protein sequence Tobacco scaffold308_contigs=4~165991-166478 DUF2719 PF10891.3 g115912.t1 - 0.065 12.9 0.1 0.14 11.8 0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2719) | Ref_seq=scaffold2666_contigs=11, transcript_loc=scaffold2666_contigs=11:238646-239273 Augustus predicted protein sequence Tobacco scaffold2666_contigs=11~238646-239273 DUF515 PF04415.7 g121850.t1 - 0.9 7.7 5.5 0.91 7.6 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) | Ref_seq=scaffold2736_contigs=16, transcript_loc=scaffold2736_contigs=16:566628-567375 Augustus predicted protein sequence Tobacco scaffold2736_contigs=16~566628-567375 PepSY_TM_2 PF13703.1 g104945.t1 - 0.0005 20.1 1.5 0.012 15.7 0.2 2.3 2 0 0 2 2 2 1 PepSY-associated TM helix | Ref_seq=scaffold2348_contigs=26, transcript_loc=scaffold2348_contigs=26:145425-147702 Augustus predicted protein sequence Tobacco scaffold2348_contigs=26~145425-147702 UBN2 PF14223.1 g93765.t1 - 0.00012 21.8 0.4 0.00024 20.8 0.3 1.6 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold2032_contigs=5, transcript_loc=scaffold2032_contigs=5:6740-7462 Augustus predicted protein sequence Tobacco scaffold2032_contigs=5~6740-7462 DUF1985 PF09331.6 g107034.t1 - 0.057 13.2 0 0.081 12.7 0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:438577-439366 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~438577-439366 CTV_P23 PF04808.7 g51478.t1 - 0.015 14.5 0 0.016 14.5 0 1.1 1 0 0 1 1 1 0 Citrus tristeza virus (CTV) P23 protein | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:129198-129476 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~129198-129476 Head-tail_con PF12236.3 g119041.t1 - 0.069 11.5 0 0.078 11.3 0 1 1 0 0 1 1 1 0 Bacteriophage head to tail connecting protein | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:837365-837676 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~837365-837676 DUF3006 PF11213.3 g116271.t1 - 0.076 12.7 1.4 0.12 12.1 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) | Ref_seq=scaffold2668_contigs=53, transcript_loc=scaffold2668_contigs=53:315251-315460 Augustus predicted protein sequence Tobacco scaffold2668_contigs=53~315251-315460 NAM-associated PF14303.1 g22518.t1 - 0.00094 19.5 1 0.0011 19.2 0.7 1.1 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold621_contigs=9, transcript_loc=scaffold621_contigs=9:206528-206872 Augustus predicted protein sequence Tobacco scaffold621_contigs=9~206528-206872 PT-HINT PF07591.6 g109705.t1 - 0.091 12.6 0 0.1 12.4 0 1.1 1 0 0 1 1 1 0 Pretoxin HINT domain | Ref_seq=scaffold2515_contigs=14, transcript_loc=scaffold2515_contigs=14:344702-345013 Augustus predicted protein sequence Tobacco scaffold2515_contigs=14~344702-345013 NADH_4Fe-4S PF10589.4 g31592.t1 - 0.26 10.4 1.3 0.5 9.5 0.9 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Ref_seq=scaffold797_contigs=11, transcript_loc=scaffold797_contigs=11:220397-220967 Augustus predicted protein sequence Tobacco scaffold797_contigs=11~220397-220967 DUF4219 PF13961.1 g15449.t1 - 0.00011 21.5 0.3 0.00018 20.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold498_contigs=12, transcript_loc=scaffold498_contigs=12:356508-357310 Augustus predicted protein sequence Tobacco scaffold498_contigs=12~356508-357310 DUF3374 PF11854.3 g65252.t1 - 0.0028 15.9 0 0.0029 15.9 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3374) | Ref_seq=scaffold1403_contigs=11, transcript_loc=scaffold1403_contigs=11:102415-103573 Augustus predicted protein sequence Tobacco scaffold1403_contigs=11~102415-103573 Apelin PF15360.1 g92725.t1 - 0.0004 20.5 5.4 0.15 12.2 0.7 2.5 2 0 0 2 2 2 2 APJ endogenous ligand | Ref_seq=scaffold1996_contigs=15, transcript_loc=scaffold1996_contigs=15:5168-6618 Augustus predicted protein sequence Tobacco scaffold1996_contigs=15~5168-6618 FCH PF00611.18 g130343.t1 - 0.0053 16.9 1.1 0.25 11.5 0.1 2.2 1 1 1 2 2 2 2 Fes/CIP4, and EFC/F-BAR homology domain | Ref_seq=scaffold4104_contigs=1, transcript_loc=scaffold4104_contigs=1:1-1102 Augustus predicted protein sequence Tobacco scaffold4104_contigs=1~1-1102 IDO PF01231.13 g83703.t1 - 0.021 13.2 0.3 0.027 12.9 0.2 1 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:64651-65599 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~64651-65599 PGG PF13962.1 g70771.t1 - 0.012 15.2 0 0.015 14.8 0 1.1 1 0 0 1 1 1 0 Domain of unknown function | Ref_seq=scaffold1497_contigs=8, transcript_loc=scaffold1497_contigs=8:133629-133976 Augustus predicted protein sequence Tobacco scaffold1497_contigs=8~133629-133976 DUF3086 PF11285.3 g103208.t1 - 0.0068 15.2 0 0.0082 14.9 0 1 1 0 0 1 1 1 1 Protein of unknown function (DUF3086) | Ref_seq=scaffold2303_contigs=18, transcript_loc=scaffold2303_contigs=18:142785-143275 Augustus predicted protein sequence Tobacco scaffold2303_contigs=18~142785-143275 RNA_pol_Rpb2_1 PF04563.10 g35838.t1 - 0.055 12.3 0 0.064 12.1 0 1.1 1 0 0 1 1 1 0 RNA polymerase beta subunit | Ref_seq=scaffold876_contigs=13, transcript_loc=scaffold876_contigs=13:577117-577470 Augustus predicted protein sequence Tobacco scaffold876_contigs=13~577117-577470 DUF313 PF03754.8 g22856.t1 - 0.00015 21.6 0 0.00019 21.2 0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF313) | Ref_seq=scaffold626_contigs=2, transcript_loc=scaffold626_contigs=2:38350-38745 Augustus predicted protein sequence Tobacco scaffold626_contigs=2~38350-38745 RVT_3 PF13456.1 g34061.t1 - 0.018 14.7 0 0.022 14.5 0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like | Ref_seq=scaffold840_contigs=5, transcript_loc=scaffold840_contigs=5:187734-188021 Augustus predicted protein sequence Tobacco scaffold840_contigs=5~187734-188021 Ovate PF04844.8 g32773.t1 - 0.053 13.3 0.3 1.3 8.8 0 2.1 2 0 0 2 2 2 0 Transcriptional repressor, ovate | Ref_seq=scaffold818_contigs=2, transcript_loc=scaffold818_contigs=2:4369-5473 Augustus predicted protein sequence Tobacco scaffold818_contigs=2~4369-5473 DUF3357 PF11837.3 g66095.t1 - 0.038 13.8 0.5 0.063 13.1 0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) | Ref_seq=scaffold1432_contigs=9, transcript_loc=scaffold1432_contigs=9:319214-319723 Augustus predicted protein sequence Tobacco scaffold1432_contigs=9~319214-319723 DUF1510 PF07423.6 g71240.t1 - 0.031 13.6 1.1 0.038 13.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:332035-332577 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~332035-332577 Nucleoplasmin PF03066.10 g85964.t1 - 0.038 13.4 11.6 0.05 13.1 8.1 1.3 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:269454-270363 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~269454-270363 DUF3934 PF13070.1 g28596.t1 - 0.49 10.6 3.4 0.67 10.2 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3934) | Ref_seq=scaffold749_contigs=4, transcript_loc=scaffold749_contigs=4:2694-2933 Augustus predicted protein sequence Tobacco scaffold749_contigs=4~2694-2933 Hpt PF01627.18 g17823.t1 - 0.047 13.7 0.2 0.12 12.3 0.1 1.7 1 1 1 2 2 2 0 Hpt domain | Ref_seq=scaffold535_contigs=8, transcript_loc=scaffold535_contigs=8:303350-303694 Augustus predicted protein sequence Tobacco scaffold535_contigs=8~303350-303694 DUF1215 PF06744.7 g119438.t1 - 0.089 12.4 0 0.11 12.1 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1215) | Ref_seq=scaffold2712_contigs=5, transcript_loc=scaffold2712_contigs=5:61155-61397 Augustus predicted protein sequence Tobacco scaffold2712_contigs=5~61155-61397 N_NLPC_P60 PF12912.2 g120670.t1 - 0.0051 16.9 0 0.0067 16.5 0 1.2 1 0 0 1 1 1 1 NLPC_P60 stabilising domain, N term | Ref_seq=scaffold2727_contigs=1, transcript_loc=scaffold2727_contigs=1:34602-35070 Augustus predicted protein sequence Tobacco scaffold2727_contigs=1~34602-35070 PHD PF00628.24 g92111.t1 - 0.42 10.3 4.7 0.59 9.8 0.5 2.1 2 0 0 2 2 2 0 PHD-finger | Ref_seq=scaffold1983_contigs=2, transcript_loc=scaffold1983_contigs=2:17716-18060 Augustus predicted protein sequence Tobacco scaffold1983_contigs=2~17716-18060 DUF1148 PF06618.6 g22564.t1 - 0.05 13.5 0.2 0.052 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1148) | Ref_seq=scaffold623_contigs=13, transcript_loc=scaffold623_contigs=13:148063-148341 Augustus predicted protein sequence Tobacco scaffold623_contigs=13~148063-148341 SLR1-BP PF07333.7 g101877.t1 - 0.32 11.2 3.6 7.8 6.8 0.3 2.5 1 1 1 2 2 2 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | Ref_seq=scaffold2224_contigs=19, transcript_loc=scaffold2224_contigs=19:96356-96667 Augustus predicted protein sequence Tobacco scaffold2224_contigs=19~96356-96667 CENP-Q PF13094.1 g6468.t1 - 0.019 14.9 2.7 0.019 14.9 1.9 1.6 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit | Ref_seq=scaffold297_contigs=3, transcript_loc=scaffold297_contigs=3:110547-111362 Augustus predicted protein sequence Tobacco scaffold297_contigs=3~110547-111362 RCC1_2 PF13540.1 g42375.t1 - 2.1 8 4.3 3 7.5 0.6 2.2 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:161780-162016 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~161780-162016 UBN2_2 PF14227.1 g87472.t1 - 0.000023 23.8 0.1 0.000053 22.7 0 1.5 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold1879_contigs=24, transcript_loc=scaffold1879_contigs=24:174914-176342 Augustus predicted protein sequence Tobacco scaffold1879_contigs=24~174914-176342 MUG2_C PF08593.5 g42822.t1 - 0.77 10 4.7 8 6.7 0 2.6 2 1 0 2 2 2 0 Meiotically up-regulated glycoproteins C-terminal | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:639649-641195 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~639649-641195 Exonuc_VII_S PF02609.11 g57954.t1 - 0.004 16.9 4.6 0.0062 16.2 3.2 1.3 1 0 0 1 1 1 1 Exonuclease VII small subunit | Ref_seq=scaffold1265_contigs=3, transcript_loc=scaffold1265_contigs=3:5433-6154 Augustus predicted protein sequence Tobacco scaffold1265_contigs=3~5433-6154 CMV_1a PF12467.3 g47661.t1 - 4.2 7.7 8.9 7.4 6.9 4.6 2.1 2 0 0 2 2 2 0 Cucumber mosaic virus 1a protein family | Ref_seq=scaffold1099_contigs=9, transcript_loc=scaffold1099_contigs=9:451783-452869 Augustus predicted protein sequence Tobacco scaffold1099_contigs=9~451783-452869 Mg-por_mtran_C PF07109.6 g83362.t1 - 0.033 14.2 0 0.05 13.6 0 1.2 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus | Ref_seq=scaffold1791_contigs=14, transcript_loc=scaffold1791_contigs=14:5155-5538 Augustus predicted protein sequence Tobacco scaffold1791_contigs=14~5155-5538 HrpF PF06266.7 g54568.t1 - 0.062 13.4 0 0.077 13.1 0 1.1 1 0 0 1 1 1 0 HrpF protein | Ref_seq=scaffold1209_contigs=7, transcript_loc=scaffold1209_contigs=7:164339-164572 Augustus predicted protein sequence Tobacco scaffold1209_contigs=7~164339-164572 DUF295 PF03478.13 g123100.t1 - 0.037 13.3 0 0.075 12.4 0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF295) | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:195451-196247 Augustus predicted protein sequence Tobacco scaffold2753_contigs=11~195451-196247 Toxin_58 PF15536.1 g69029.t1 - 0.011 15.6 0 0.014 15.2 0 1.2 1 0 0 1 1 1 0 Putative toxin 58 | Ref_seq=scaffold1483_contigs=7, transcript_loc=scaffold1483_contigs=7:323518-324004 Augustus predicted protein sequence Tobacco scaffold1483_contigs=7~323518-324004 Pox_A_type_inc PF04508.7 g1415.t1 - 0.0024 17.5 0.3 0.65 9.9 0.1 3.6 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat | Ref_seq=scaffold182_contigs=2, transcript_loc=scaffold182_contigs=2:85558-86007 Augustus predicted protein sequence Tobacco scaffold182_contigs=2~85558-86007 DUF690 PF05108.8 g86663.t1 - 0.097 11 0 0.11 10.8 0 1 1 0 0 1 1 1 0 Protein of unknown function (DUF690) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:144569-145037 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~144569-145037 Sigma54_AID PF00309.15 g124668.t1 - 0.076 12.4 0.9 0.15 11.5 0.3 1.7 2 0 0 2 2 2 0 Sigma-54 factor, Activator interacting domain (AID) | Ref_seq=scaffold2763_contigs=1, transcript_loc=scaffold2763_contigs=1:229977-230267 Augustus predicted protein sequence Tobacco scaffold2763_contigs=1~229977-230267 Dec-1 PF04624.9 g74789.t1 - 0.0057 16.2 0.3 0.0057 16.2 0.2 2 2 0 0 2 2 2 1 Dec-1 repeat | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:77987-78995 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~77987-78995 ING PF12998.2 g17662.t1 - 0.0099 16.1 0.4 0.014 15.7 0.3 1.2 1 0 0 1 1 1 1 Inhibitor of growth proteins N-terminal histone-binding | Ref_seq=scaffold534_contigs=3, transcript_loc=scaffold534_contigs=3:33739-34059 Augustus predicted protein sequence Tobacco scaffold534_contigs=3~33739-34059 DUF972 PF06156.8 g128529.t1 - 0.0004 20.7 2.4 0.00045 20.5 1.7 1 1 0 0 1 1 1 1 Protein of unknown function (DUF972) | Ref_seq=scaffold2873_contigs=1, transcript_loc=scaffold2873_contigs=1:38841-39044 Augustus predicted protein sequence Tobacco scaffold2873_contigs=1~38841-39044 Speriolin_N PF15058.1 g79819.t1 - 0.021 14.7 0.7 0.039 13.8 0.5 1.5 1 0 0 1 1 1 0 Speriolin N terminus | Ref_seq=scaffold1702_contigs=7, transcript_loc=scaffold1702_contigs=7:263787-264407 Augustus predicted protein sequence Tobacco scaffold1702_contigs=7~263787-264407 Pox_A_type_inc PF04508.7 g72359.t1 - 0.018 14.7 1.8 0.037 13.8 0.1 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:882663-883047 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~882663-883047 FlhE PF06366.8 g11668.t1 - 0.000041 23.3 0.5 0.066 13 0.1 2.4 1 1 1 2 2 2 2 Flagellar protein FlhE | Ref_seq=scaffold410_contigs=1, transcript_loc=scaffold410_contigs=1:4018-5242 Augustus predicted protein sequence Tobacco scaffold410_contigs=1~4018-5242 Gal-3-0_sulfotr PF06990.6 g97984.t1 - 0.11 11.1 0 0.12 11 0 1 1 0 0 1 1 1 0 Galactose-3-O-sulfotransferase | Ref_seq=scaffold2147_contigs=12, transcript_loc=scaffold2147_contigs=12:267696-267971 Augustus predicted protein sequence Tobacco scaffold2147_contigs=12~267696-267971 c-SKI_SMAD_bind PF08782.5 g23300.t1 - 0.044 13.9 0 0.055 13.5 0 1.1 1 0 0 1 1 1 0 c-SKI Smad4 binding domain | Ref_seq=scaffold641_contigs=2, transcript_loc=scaffold641_contigs=2:73422-73736 Augustus predicted protein sequence Tobacco scaffold641_contigs=2~73422-73736 Siah-Interact_N PF09032.6 g97213.t1 - 0.016 15.2 0.4 0.037 14 0 1.9 2 0 0 2 2 2 0 Siah interacting protein, N terminal | Ref_seq=scaffold2130_contigs=1, transcript_loc=scaffold2130_contigs=1:19561-20693 Augustus predicted protein sequence Tobacco scaffold2130_contigs=1~19561-20693 DUF3098 PF11297.3 g105940.t1 - 0.065 12.9 0 0.076 12.7 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3098) | Ref_seq=scaffold2367_contigs=57, transcript_loc=scaffold2367_contigs=57:1107746-1108015 Augustus predicted protein sequence Tobacco scaffold2367_contigs=57~1107746-1108015 zf-CCHC PF00098.18 g104547.t1 - 0.00012 21.8 0.7 0.00023 20.9 0.5 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold2342_contigs=20, transcript_loc=scaffold2342_contigs=20:10782-11960 Augustus predicted protein sequence Tobacco scaffold2342_contigs=20~10782-11960 DUF1341 PF07071.6 g129084.t1 - 0.073 12.6 0 0.087 12.3 0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) | Ref_seq=scaffold2915_contigs=1, transcript_loc=scaffold2915_contigs=1:11890-12192 Augustus predicted protein sequence Tobacco scaffold2915_contigs=1~11890-12192 UBN2 PF14223.1 g8266.t1 - 0.0065 16.2 0 0.0081 15.9 0 1.3 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:63609-63869 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~63609-63869 PLC-beta_C PF08703.5 g127149.t1 - 0.06 13 1 0.075 12.7 0.7 1.1 1 0 0 1 1 1 0 PLC-beta C terminal | Ref_seq=scaffold2814_contigs=1, transcript_loc=scaffold2814_contigs=1:70746-72097 Augustus predicted protein sequence Tobacco scaffold2814_contigs=1~70746-72097 GCS2 PF04107.8 g72232.t1 - 0.02 14 0 0.02 14 0 1 1 0 0 1 1 1 0 Glutamate-cysteine ligase family 2(GCS2) | Ref_seq=scaffold1505_contigs=29, transcript_loc=scaffold1505_contigs=29:572440-572691 Augustus predicted protein sequence Tobacco scaffold1505_contigs=29~572440-572691 zf-CCHC_4 PF14392.1 g82115.t1 - 0.000000016 34 0.1 0.000000032 33 0.1 1.5 1 0 0 1 1 1 1 Zinc knuckle | Ref_seq=scaffold1740_contigs=20, transcript_loc=scaffold1740_contigs=20:698077-700628 Augustus predicted protein sequence Tobacco scaffold1740_contigs=20~698077-700628 Hemagglutinin PF00509.13 g59384.t1 - 0.12 10.4 0 0.14 10.2 0 1 1 0 0 1 1 1 0 Haemagglutinin | Ref_seq=scaffold1291_contigs=2, transcript_loc=scaffold1291_contigs=2:28944-29679 Augustus predicted protein sequence Tobacco scaffold1291_contigs=2~28944-29679 IP_trans PF02121.13 g18537.t1 - 0.0084 15.3 0.1 0.01 15 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:179503-179868 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~179503-179868 DUF1645 PF07816.6 g69650.t1 - 0.94 9.9 6.2 10 6.5 1.2 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1645) | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:772807-773544 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~772807-773544 FixQ PF05545.6 g48343.t1 - 1.2 8.7 5.9 2 8 4.1 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ | Ref_seq=scaffold1107_contigs=16, transcript_loc=scaffold1107_contigs=16:466866-467207 Augustus predicted protein sequence Tobacco scaffold1107_contigs=16~466866-467207 NYD-SP28_assoc PF14775.1 g96303.t1 - 0.055 13.1 0.7 0.085 12.5 0.1 1.6 2 0 0 2 2 2 0 Sperm tail C-terminal domain | Ref_seq=scaffold2100_contigs=9, transcript_loc=scaffold2100_contigs=9:62859-63591 Augustus predicted protein sequence Tobacco scaffold2100_contigs=9~62859-63591 RXT2_N PF08595.6 g12.t1 - 0.69 9.6 5.1 1.7 8.3 3.5 1.6 1 0 0 1 1 1 0 RXT2-like, N-terminal | Ref_seq=scaffold1_contigs=5, transcript_loc=scaffold1_contigs=5:44740-45744 Augustus predicted protein sequence Tobacco scaffold1_contigs=5~44740-45744 DUF3445 PF11927.3 g28152.t1 - 0.026 13.8 0.4 0.033 13.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) | Ref_seq=scaffold738_contigs=9, transcript_loc=scaffold738_contigs=9:208857-209450 Augustus predicted protein sequence Tobacco scaffold738_contigs=9~208857-209450 DUF2594 PF10769.4 g67659.t1 - 0.085 12.9 0.1 0.16 12 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold1453_contigs=3, transcript_loc=scaffold1453_contigs=3:41172-41639 Augustus predicted protein sequence Tobacco scaffold1453_contigs=3~41172-41639 Abhydrolase_7 PF12715.2 g91722.t1 - 0.13 11.1 0.2 0.13 11.1 0.2 1 1 0 0 1 1 1 0 Abhydrolase family | Ref_seq=scaffold1977_contigs=8, transcript_loc=scaffold1977_contigs=8:197129-197428 Augustus predicted protein sequence Tobacco scaffold1977_contigs=8~197129-197428 DUF904 PF06005.7 g112696.t1 - 0.097 12.9 0.1 0.15 12.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF904) | Ref_seq=scaffold2615_contigs=8, transcript_loc=scaffold2615_contigs=8:164866-165213 Augustus predicted protein sequence Tobacco scaffold2615_contigs=8~164866-165213 TrbE PF11100.3 g36896.t1 - 0.14 12 0.2 0.2 11.5 0.2 1.3 1 0 0 1 1 1 0 Conjugal transfer protein TrbE | Ref_seq=scaffold903_contigs=3, transcript_loc=scaffold903_contigs=3:79873-80097 Augustus predicted protein sequence Tobacco scaffold903_contigs=3~79873-80097 NAM-associated PF14303.1 g61644.t1 - 0.013 15.7 0.3 0.016 15.5 0.2 1.3 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain | Ref_seq=scaffold1337_contigs=2, transcript_loc=scaffold1337_contigs=2:40108-40808 Augustus predicted protein sequence Tobacco scaffold1337_contigs=2~40108-40808 IFP_35_N PF07334.8 g85645.t1 - 0.14 12.1 9.1 1.5 8.8 3.9 2.9 2 1 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:238121-238738 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~238121-238738 FBD PF08387.5 g64878.t1 - 0.0096 15.3 0 0.02 14.3 0 1.6 1 0 0 1 1 1 1 FBD | Ref_seq=scaffold1392_contigs=17, transcript_loc=scaffold1392_contigs=17:293080-293689 Augustus predicted protein sequence Tobacco scaffold1392_contigs=17~293080-293689 MAP65_ASE1 PF03999.7 g4163.t1 - 0.15 10.6 3 0.17 10.4 2.1 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) | Ref_seq=scaffold254_contigs=6, transcript_loc=scaffold254_contigs=6:10228-11133 Augustus predicted protein sequence Tobacco scaffold254_contigs=6~10228-11133 zf-Paramyx-P PF13008.2 g103882.t1 - 0.024 13.8 1.3 1.3 8.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein | Ref_seq=scaffold2319_contigs=5, transcript_loc=scaffold2319_contigs=5:294466-294738 Augustus predicted protein sequence Tobacco scaffold2319_contigs=5~294466-294738 zf-BED PF02892.10 g120226.t1 - 0.03 14 2 0.07 12.8 1.4 1.7 1 1 0 1 1 1 0 BED zinc finger | Ref_seq=scaffold2721_contigs=4, transcript_loc=scaffold2721_contigs=4:52356-56413 Augustus predicted protein sequence Tobacco scaffold2721_contigs=4~52356-56413 CDC45 PF02724.9 g102006.t1 - 0.6 8 10.3 1.1 7.2 7.1 1.4 1 0 0 1 1 1 0 CDC45-like protein | Ref_seq=scaffold2226_contigs=11, transcript_loc=scaffold2226_contigs=11:303332-304461 Augustus predicted protein sequence Tobacco scaffold2226_contigs=11~303332-304461 DUF4584 PF15223.1 g28283.t1 - 0.018 14.3 2.2 0.02 14.1 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4584) | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:115181-115513 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~115181-115513 RNA_pol_Rpb2_4 PF04566.8 g31662.t1 - 0.055 13.2 0 0.07 12.9 0 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 4 | Ref_seq=scaffold798_contigs=6, transcript_loc=scaffold798_contigs=6:47105-47341 Augustus predicted protein sequence Tobacco scaffold798_contigs=6~47105-47341 FAM176 PF14851.1 g51710.t1 - 0.025 14.2 0.2 0.025 14.2 0.1 1 1 0 0 1 1 1 0 FAM176 family | Ref_seq=scaffold1165_contigs=35, transcript_loc=scaffold1165_contigs=35:49652-49867 Augustus predicted protein sequence Tobacco scaffold1165_contigs=35~49652-49867 DUF976 PF06162.7 g55481.t1 - 0.037 13.5 0 0.041 13.3 0 1.1 1 0 0 1 1 1 0 Caenorhabditis elegans protein of unknown function (DUF976) | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:244542-244926 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~244542-244926 zf-Paramyx-P PF13008.2 g69583.t1 - 0.25 10.5 0.2 0.25 10.5 0.1 2.4 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:498932-499502 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~498932-499502 RVT_3 PF13456.1 g20314.t1 - 0.00013 21.7 0 0.00018 21.2 0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:19485-19991 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~19485-19991 Lipase_bact_N PF12262.3 g97422.t1 - 0.014 14.6 0 0.032 13.4 0 1.5 1 1 1 2 2 2 0 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:74796-75377 Augustus predicted protein sequence Tobacco scaffold2136_contigs=4~74796-75377 zf-CCHC_4 PF14392.1 g90127.t1 - 0.069 12.8 1.1 0.14 11.8 0.7 1.5 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:134208-134597 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~134208-134597 DUF1748 PF08520.5 g102477.t1 - 0.12 12 0 20 4.9 0 2.2 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1748) | Ref_seq=scaffold2252_contigs=4, transcript_loc=scaffold2252_contigs=4:1-787 Augustus predicted protein sequence Tobacco scaffold2252_contigs=4~1-787 DUF1398 PF07166.6 g89370.t1 - 0.13 12.1 0.2 12 5.8 0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) | Ref_seq=scaffold1945_contigs=4, transcript_loc=scaffold1945_contigs=4:1585-2931 Augustus predicted protein sequence Tobacco scaffold1945_contigs=4~1585-2931 Imm43 PF15602.1 g19214.t1 - 0.053 13.4 0.1 0.062 13.2 0 1.1 1 0 0 1 1 1 0 Immunity protein 43 | Ref_seq=scaffold561_contigs=10, transcript_loc=scaffold561_contigs=10:595242-595583 Augustus predicted protein sequence Tobacco scaffold561_contigs=10~595242-595583 DUF1216 PF06746.6 g28221.t1 - 0.022 14.5 0.9 0.12 12.1 0.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1216) | Ref_seq=scaffold742_contigs=5, transcript_loc=scaffold742_contigs=5:174247-174567 Augustus predicted protein sequence Tobacco scaffold742_contigs=5~174247-174567 BAR_2 PF10455.4 g28272.t1 - 0.026 13.4 1.3 0.03 13.2 0.9 1.1 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking | Ref_seq=scaffold743_contigs=3, transcript_loc=scaffold743_contigs=3:102291-102542 Augustus predicted protein sequence Tobacco scaffold743_contigs=3~102291-102542 PNRC PF15365.1 g4279.t1 - 0.055 13.4 0.2 0.21 11.6 0 2.1 2 0 0 2 2 2 0 Proline-rich nuclear receptor coactivator | Ref_seq=scaffold256_contigs=5, transcript_loc=scaffold256_contigs=5:7813-8594 Augustus predicted protein sequence Tobacco scaffold256_contigs=5~7813-8594 Apelin PF15360.1 g66272.t1 - 0.091 12.9 0.7 0.2 11.9 0.5 1.6 1 0 0 1 1 1 0 APJ endogenous ligand | Ref_seq=scaffold1438_contigs=6, transcript_loc=scaffold1438_contigs=6:82206-84067 Augustus predicted protein sequence Tobacco scaffold1438_contigs=6~82206-84067 Red1 PF07964.6 g62278.t1 - 0.038 12.1 3.1 0.05 11.7 2.2 1 1 0 0 1 1 1 0 Rec10 / Red1 | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:340641-341953 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~340641-341953 FYDLN_acid PF09538.5 g129517.t1 - 0.5 10.9 17.1 2.1 8.9 3.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) | Ref_seq=scaffold2972_contigs=1, transcript_loc=scaffold2972_contigs=1:198-656 Augustus predicted protein sequence Tobacco scaffold2972_contigs=1~198-656 DUF3172 PF11371.3 g38723.t1 - 0.0056 16.1 0 0.0061 16 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3172) | Ref_seq=scaffold943_contigs=4, transcript_loc=scaffold943_contigs=4:36171-37313 Augustus predicted protein sequence Tobacco scaffold943_contigs=4~36171-37313 Hexokinase_1 PF00349.16 g106610.t1 - 0.041 13.2 0 0.043 13.1 0 1.1 1 0 0 1 1 1 0 Hexokinase | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:190152-190514 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~190152-190514 Gla PF00594.15 g9711.t1 - 0.11 12.2 0.8 0.21 11.2 0.5 1.5 1 0 0 1 1 1 0 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain | Ref_seq=scaffold378_contigs=5, transcript_loc=scaffold378_contigs=5:133198-134277 Augustus predicted protein sequence Tobacco scaffold378_contigs=5~133198-134277 CBM_20 PF00686.14 g97806.t1 - 0.05 13.2 0.4 9.1 5.9 0 2.1 2 0 0 2 2 2 0 Starch binding domain | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:200727-201664 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~200727-201664 EspF PF04806.7 g95553.t1 - 0.0078 16.3 1.1 0.013 15.7 0.8 1.3 1 0 0 1 1 1 1 EspF protein repeat | Ref_seq=scaffold2062_contigs=33, transcript_loc=scaffold2062_contigs=33:36451-36903 Augustus predicted protein sequence Tobacco scaffold2062_contigs=33~36451-36903 DUF1028 PF06267.7 g62630.t1 - 0.087 12.2 0 0.11 11.9 0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF1028) | Ref_seq=scaffold1352_contigs=4, transcript_loc=scaffold1352_contigs=4:108373-108849 Augustus predicted protein sequence Tobacco scaffold1352_contigs=4~108373-108849 Borrelia_P13 PF05628.7 g44727.t1 - 0.00013 21.7 0 0.35 10.6 0 2.1 1 1 1 2 2 2 2 Borrelia membrane protein P13 | Ref_seq=scaffold1039_contigs=7, transcript_loc=scaffold1039_contigs=7:168475-169099 Augustus predicted protein sequence Tobacco scaffold1039_contigs=7~168475-169099 FAM47 PF14642.1 g106737.t1 - 0.0055 16 0.4 0.006 15.9 0.3 1 1 0 0 1 1 1 1 FAM47 family | Ref_seq=scaffold2378_contigs=18, transcript_loc=scaffold2378_contigs=18:494515-495181 Augustus predicted protein sequence Tobacco scaffold2378_contigs=18~494515-495181 DUF4396 PF14342.1 g68585.t1 - 0.6 10.2 3.4 2 8.5 2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:531996-532289 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~531996-532289 Spt5_N PF11942.3 g7816.t1 - 0.0034 17.9 3.9 0.0034 17.9 2.7 3.4 3 1 0 3 3 3 2 Spt5 transcription elongation factor, acidic N-terminal | Ref_seq=scaffold321_contigs=5, transcript_loc=scaffold321_contigs=5:164262-164585 Augustus predicted protein sequence Tobacco scaffold321_contigs=5~164262-164585 PAT1 PF09770.4 g31992.t1 - 7.1 4.7 10.6 7.3 4.6 7.3 1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 | Ref_seq=scaffold802_contigs=3, transcript_loc=scaffold802_contigs=3:19202-19573 Augustus predicted protein sequence Tobacco scaffold802_contigs=3~19202-19573 HALZ PF02183.13 g81710.t1 - 0.0011 18.5 3.3 0.045 13.4 0.4 2.7 1 1 1 2 2 2 2 Homeobox associated leucine zipper | Ref_seq=scaffold1735_contigs=2, transcript_loc=scaffold1735_contigs=2:14482-15165 Augustus predicted protein sequence Tobacco scaffold1735_contigs=2~14482-15165 Aldolase_2 PF10120.4 g25293.t1 - 0.063 12.6 0.3 0.074 12.4 0.2 1.3 1 0 0 1 1 1 0 Putative aldolase | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:18194-19572 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~18194-19572 Nucleic_acid_bd PF13820.1 g45182.t1 - 0.074 12.6 0 0.093 12.3 0 1.1 1 0 0 1 1 1 0 Putative nucleic acid-binding region | Ref_seq=scaffold1044_contigs=3, transcript_loc=scaffold1044_contigs=3:17192-17458 Augustus predicted protein sequence Tobacco scaffold1044_contigs=3~17192-17458 DUF1819 PF08849.6 g58969.t1 - 0.031 13.6 0.1 0.042 13.2 0 1.1 1 0 0 1 1 1 0 Putative inner membrane protein (DUF1819) | Ref_seq=scaffold1276_contigs=9, transcript_loc=scaffold1276_contigs=9:307637-309041 Augustus predicted protein sequence Tobacco scaffold1276_contigs=9~307637-309041 Med19 PF10278.4 g129535.t1 - 0.00018 21.2 6.5 0.0002 21 4.5 1.2 1 0 0 1 1 1 1 Mediator of RNA pol II transcription subunit 19 | Ref_seq=scaffold2976_contigs=1, transcript_loc=scaffold2976_contigs=1:465-1045 Augustus predicted protein sequence Tobacco scaffold2976_contigs=1~465-1045 Endonuc_Holl PF10107.4 g100654.t1 - 0.044 13.4 0.3 0.056 13.1 0.2 1.2 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase | Ref_seq=scaffold2201_contigs=5, transcript_loc=scaffold2201_contigs=5:182016-182789 Augustus predicted protein sequence Tobacco scaffold2201_contigs=5~182016-182789 DUF1580 PF07618.6 g52342.t1 - 0.11 11.8 0.3 5.4 6.4 0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1580) | Ref_seq=scaffold1179_contigs=8, transcript_loc=scaffold1179_contigs=8:38472-39387 Augustus predicted protein sequence Tobacco scaffold1179_contigs=8~38472-39387 Tropomyosin PF00261.15 g35185.t1 - 0.092 11.8 0 0.12 11.4 0 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:170862-171308 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~170862-171308 Rota_NSP4 PF01452.11 g83084.t1 - 0.15 11.3 1 0.24 10.7 0.7 1.3 1 0 0 1 1 1 0 Rotavirus non structural protein | Ref_seq=scaffold1778_contigs=23, transcript_loc=scaffold1778_contigs=23:73291-74494 Augustus predicted protein sequence Tobacco scaffold1778_contigs=23~73291-74494 ATHILA PF03078.10 g90232.t1 - 0.0000055 25.2 0.2 0.052 12.1 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold1959_contigs=15, transcript_loc=scaffold1959_contigs=15:415191-415967 Augustus predicted protein sequence Tobacco scaffold1959_contigs=15~415191-415967 Med3 PF11593.3 g113235.t1 - 0.13 11.4 4.5 0.13 11.4 3.1 1.1 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal | Ref_seq=scaffold2624_contigs=4, transcript_loc=scaffold2624_contigs=4:134025-134336 Augustus predicted protein sequence Tobacco scaffold2624_contigs=4~134025-134336 ATHILA PF03078.10 g32612.t1 - 0.00000027 29.5 0.4 0.0046 15.6 0.1 2.1 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold817_contigs=11, transcript_loc=scaffold817_contigs=11:479884-483806 Augustus predicted protein sequence Tobacco scaffold817_contigs=11~479884-483806 RVT_3 PF13456.1 g114366.t1 - 0.0000041 26.4 0 0.08 12.7 0 2.1 2 0 0 2 2 2 2 Reverse transcriptase-like | Ref_seq=scaffold2647_contigs=26, transcript_loc=scaffold2647_contigs=26:23683-24240 Augustus predicted protein sequence Tobacco scaffold2647_contigs=26~23683-24240 IFP_35_N PF07334.8 g100758.t1 - 0.051 13.5 0.6 0.1 12.5 0.3 1.6 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold2204_contigs=7, transcript_loc=scaffold2204_contigs=7:134929-135726 Augustus predicted protein sequence Tobacco scaffold2204_contigs=7~134929-135726 Nbl1_Borealin_N PF10444.4 g76763.t1 - 0.075 12.4 0.1 0.16 11.3 0 1.5 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal | Ref_seq=scaffold1620_contigs=20, transcript_loc=scaffold1620_contigs=20:5325-5669 Augustus predicted protein sequence Tobacco scaffold1620_contigs=20~5325-5669 Ada_Zn_binding PF02805.11 g827.t1 - 0.19 11.3 0.1 0.19 11.3 0.1 1.9 2 1 0 2 2 2 0 Metal binding domain of Ada | Ref_seq=scaffold53_contigs=4, transcript_loc=scaffold53_contigs=4:80429-80716 Augustus predicted protein sequence Tobacco scaffold53_contigs=4~80429-80716 PBP1_TM PF14812.1 g67344.t1 - 0.0006 20 2.2 0.00069 19.8 1.5 1.2 1 0 0 1 1 1 1 Transmembrane domain of transglycosylase PBP1 at N-terminal | Ref_seq=scaffold1447_contigs=7, transcript_loc=scaffold1447_contigs=7:81311-81652 Augustus predicted protein sequence Tobacco scaffold1447_contigs=7~81311-81652 DUF1347 PF07079.6 g55331.t1 - 0.0031 15.7 0.1 0.0036 15.5 0.1 1 1 0 0 1 1 1 1 Protein of unknown function (DUF1347) | Ref_seq=scaffold1217_contigs=8, transcript_loc=scaffold1217_contigs=8:139308-139694 Augustus predicted protein sequence Tobacco scaffold1217_contigs=8~139308-139694 CDC37_C PF08564.5 g104347.t1 - 0.12 12.2 0 0.17 11.7 0 1.2 1 0 0 1 1 1 0 Cdc37 C terminal domain | Ref_seq=scaffold2337_contigs=27, transcript_loc=scaffold2337_contigs=27:597214-597447 Augustus predicted protein sequence Tobacco scaffold2337_contigs=27~597214-597447 Androgen_recep PF02166.11 g75892.t1 - 0.092 11.5 0.1 0.092 11.5 0.1 1 1 0 0 1 1 1 0 Androgen receptor | Ref_seq=scaffold1605_contigs=5, transcript_loc=scaffold1605_contigs=5:131051-131302 Augustus predicted protein sequence Tobacco scaffold1605_contigs=5~131051-131302 Baculo_PEP_C PF04513.7 g89455.t1 - 0.039 13.7 1.9 0.06 13.1 1.3 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus | Ref_seq=scaffold1947_contigs=6, transcript_loc=scaffold1947_contigs=6:77235-77879 Augustus predicted protein sequence Tobacco scaffold1947_contigs=6~77235-77879 DBD_Tnp_Mut PF03108.10 g64563.t1 - 0.00028 20.3 1.8 0.00044 19.7 1.2 1.3 1 0 0 1 1 1 1 MuDR family transposase | Ref_seq=scaffold1388_contigs=6, transcript_loc=scaffold1388_contigs=6:32887-33573 Augustus predicted protein sequence Tobacco scaffold1388_contigs=6~32887-33573 XhoI PF04555.8 g8777.t1 - 0.11 11.8 0 0.13 11.6 0 1.1 1 0 0 1 1 1 0 Restriction endonuclease XhoI | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:168009-168398 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~168009-168398 DUF2894 PF11445.3 g121110.t1 - 1.9 8.7 6.7 4.1 7.6 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2894) | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:388008-389248 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~388008-389248 DUF740 PF05340.7 g107101.t1 - 1.6 6.9 5.8 1.7 6.8 4 1 1 0 0 1 1 1 0 Protein of unknown function (DUF740) | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:640648-640999 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~640648-640999 PhrC_PhrF PF11131.3 g64296.t1 - 0.23 11 2 12 5.5 1.1 2.3 1 1 1 2 2 2 0 Rap-phr extracellular signalling | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:397458-398174 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~397458-398174 ATHILA PF03078.10 g122295.t1 - 0.00015 20.5 0.1 0.012 14.2 0 2 1 1 1 2 2 2 2 ATHILA ORF-1 family | Ref_seq=scaffold2743_contigs=6, transcript_loc=scaffold2743_contigs=6:83036-83413 Augustus predicted protein sequence Tobacco scaffold2743_contigs=6~83036-83413 PTR2 PF00854.16 g115126.t1 - 0.000016 23.8 2.8 0.000024 23.3 2 1.3 1 1 0 1 1 1 1 POT family | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:58132-58410 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~58132-58410 Histone_HNS PF00816.16 g24459.t1 - 4 8 9.7 1.8 9.1 4 2.1 2 0 0 2 2 2 0 H-NS histone family | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:257928-258946 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~257928-258946 TLP-20 PF06088.6 g129533.t1 - 0.017 14.7 0.2 0.019 14.6 0.2 1 1 0 0 1 1 1 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) | Ref_seq=scaffold2975_contigs=1, transcript_loc=scaffold2975_contigs=1:5994-6311 Augustus predicted protein sequence Tobacco scaffold2975_contigs=1~5994-6311 DUF3342 PF11822.3 g79347.t1 - 0.1 11.7 0 0.1 11.7 0 1 1 0 0 1 1 1 0 Domain of unknown function (DUF3342) | Ref_seq=scaffold1690_contigs=25, transcript_loc=scaffold1690_contigs=25:563890-564132 Augustus predicted protein sequence Tobacco scaffold1690_contigs=25~563890-564132 DUF4219 PF13961.1 g26374.t1 - 0.00025 20.3 0.3 0.0005 19.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold714_contigs=9, transcript_loc=scaffold714_contigs=9:218080-220566 Augustus predicted protein sequence Tobacco scaffold714_contigs=9~218080-220566 DUF722 PF05263.6 g17172.t1 - 0.073 13.2 0 0.11 12.6 0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF722) | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:98053-98954 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~98053-98954 GreA_GreB_N PF03449.10 g97713.t1 - 0.12 12.4 4.6 0.39 10.8 2.6 2 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:16355-17183 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~16355-17183 KfrA_N PF11740.3 g6722.t1 - 0.037 14.4 2.9 0.05 14 2 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term | Ref_seq=scaffold303_contigs=3, transcript_loc=scaffold303_contigs=3:36372-37022 Augustus predicted protein sequence Tobacco scaffold303_contigs=3~36372-37022 DUF3417 PF11897.3 g29229.t1 - 0.0036 17.2 0 0.0045 16.9 0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3417) | Ref_seq=scaffold757_contigs=4, transcript_loc=scaffold757_contigs=4:26686-27217 Augustus predicted protein sequence Tobacco scaffold757_contigs=4~26686-27217 VGCC_beta4Aa_N PF12052.3 g24463.t1 - 0.051 13.4 0.8 0.09 12.6 0.6 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:263808-264509 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~263808-264509 HD-ZIP_N PF04618.7 g107118.t1 - 0.32 11.5 2.5 0.38 11.3 1.8 1.2 1 1 0 1 1 1 0 HD-ZIP protein N terminus | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:704214-704414 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~704214-704414 Reo_sigmaC PF04582.7 g40068.t1 - 0.049 12.8 0.1 0.054 12.6 0.1 1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein | Ref_seq=scaffold965_contigs=10, transcript_loc=scaffold965_contigs=10:356535-356828 Augustus predicted protein sequence Tobacco scaffold965_contigs=10~356535-356828 AsmA_2 PF13502.1 g114727.t1 - 0.000017 24.2 0 1.7 7.9 0 3.1 3 0 0 3 3 3 3 AsmA-like C-terminal region | Ref_seq=scaffold2654_contigs=6, transcript_loc=scaffold2654_contigs=6:18140-20125 Augustus predicted protein sequence Tobacco scaffold2654_contigs=6~18140-20125 Mucin PF01456.12 g96775.t1 - 3.8 7.2 10.5 4.2 7.1 7.3 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein | Ref_seq=scaffold2119_contigs=20, transcript_loc=scaffold2119_contigs=20:380285-380704 Augustus predicted protein sequence Tobacco scaffold2119_contigs=20~380285-380704 TFIIA PF03153.8 g122173.t1 - 0.019 14.9 3.3 0.019 14.8 2.3 1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold2741_contigs=6, transcript_loc=scaffold2741_contigs=6:425512-426009 Augustus predicted protein sequence Tobacco scaffold2741_contigs=6~425512-426009 MCPVI PF02993.9 g39751.t1 - 0.14 12.2 0.4 0.18 11.9 0.3 1.1 1 0 0 1 1 1 0 Minor capsid protein VI | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:160021-160874 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~160021-160874 Peptidase_S46 PF10459.4 g16152.t1 - 1.2 7.4 9 1.5 7.1 6.2 1.2 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold509_contigs=2, transcript_loc=scaffold509_contigs=2:140698-141285 Augustus predicted protein sequence Tobacco scaffold509_contigs=2~140698-141285 FH2 PF02181.18 g7935.t1 - 0.01 14.7 0.2 0.011 14.6 0.1 1 1 0 0 1 1 1 0 Formin Homology 2 Domain | Ref_seq=scaffold325_contigs=5, transcript_loc=scaffold325_contigs=5:167744-168061 Augustus predicted protein sequence Tobacco scaffold325_contigs=5~167744-168061 DUF4519 PF15012.1 g19502.t1 - 0.016 15.1 1.7 0.023 14.6 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) | Ref_seq=scaffold568_contigs=22, transcript_loc=scaffold568_contigs=22:695257-695544 Augustus predicted protein sequence Tobacco scaffold568_contigs=22~695257-695544 SLEI_Leptospira PF07620.6 g126461.t1 - 0.053 13.3 0.2 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 SLEI | Ref_seq=scaffold2795_contigs=1, transcript_loc=scaffold2795_contigs=1:50246-50895 Augustus predicted protein sequence Tobacco scaffold2795_contigs=1~50246-50895 Lsm_C PF14894.1 g121119.t1 - 0.071 12.6 0.2 0.17 11.4 0 1.6 2 0 0 2 2 2 0 Lsm C-terminal | Ref_seq=scaffold2731_contigs=12, transcript_loc=scaffold2731_contigs=12:412669-412905 Augustus predicted protein sequence Tobacco scaffold2731_contigs=12~412669-412905 Phage_integrase PF00589.17 g130080.t1 - 0.11 12.1 0 0.12 11.9 0 1.1 1 0 0 1 1 1 0 Phage integrase family | Ref_seq=scaffold3413_contigs=1, transcript_loc=scaffold3413_contigs=1:2006-2350 Augustus predicted protein sequence Tobacco scaffold3413_contigs=1~2006-2350 MucB_RseB PF03888.9 g45304.t1 - 0.081 11.9 0 0.097 11.6 0 1.1 1 0 0 1 1 1 0 MucB/RseB family | Ref_seq=scaffold1045_contigs=9, transcript_loc=scaffold1045_contigs=9:139632-140114 Augustus predicted protein sequence Tobacco scaffold1045_contigs=9~139632-140114 Antigen_Bd37 PF11641.3 g111038.t1 - 0.099 11.9 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein | Ref_seq=scaffold2574_contigs=6, transcript_loc=scaffold2574_contigs=6:122317-126502 Augustus predicted protein sequence Tobacco scaffold2574_contigs=6~122317-126502 ABC2_membrane_3 PF12698.2 g27026.t1 - 0.007 15.4 0.4 0.0094 15 0.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein | Ref_seq=scaffold720_contigs=9, transcript_loc=scaffold720_contigs=9:745925-747797 Augustus predicted protein sequence Tobacco scaffold720_contigs=9~745925-747797 Myosin_tail_1 PF01576.14 g74774.t1 - 0.0087 13.8 1 0.011 13.4 0.7 1 1 0 0 1 1 1 1 Myosin tail | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:59329-59707 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~59329-59707 DUF2594 PF10769.4 g117856.t1 - 0.083 12.9 0 0.12 12.4 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) | Ref_seq=scaffold2695_contigs=11, transcript_loc=scaffold2695_contigs=11:127347-127748 Augustus predicted protein sequence Tobacco scaffold2695_contigs=11~127347-127748 NAS PF03059.11 g115455.t1 - 0.1 11.7 0 0.13 11.4 0 1.1 1 0 0 1 1 1 0 Nicotianamine synthase protein | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:383277-383723 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~383277-383723 APOBEC_C PF05240.9 g67758.t1 - 0.011 15 0 0.014 14.7 0 1.2 1 0 0 1 1 1 0 APOBEC-like C-terminal domain | Ref_seq=scaffold1455_contigs=11, transcript_loc=scaffold1455_contigs=11:230721-230921 Augustus predicted protein sequence Tobacco scaffold1455_contigs=11~230721-230921 PMD PF10536.4 g87673.t1 - 0.00000037 29.4 0.2 0.00000037 29.4 0.1 2.7 2 1 1 3 3 3 2 Plant mobile domain | Ref_seq=scaffold1892_contigs=29, transcript_loc=scaffold1892_contigs=29:55283-57255 Augustus predicted protein sequence Tobacco scaffold1892_contigs=29~55283-57255 Nnf1 PF03980.9 g5377.t1 - 0.0012 18.8 6.2 0.083 12.8 0.1 3.3 2 1 1 3 3 3 1 Nnf1 | Ref_seq=scaffold278_contigs=5, transcript_loc=scaffold278_contigs=5:137894-138385 Augustus predicted protein sequence Tobacco scaffold278_contigs=5~137894-138385 Chlam_PMP PF02415.12 g101539.t1 - 0.88 9.9 3.7 0.29 11.4 0.4 1.8 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat | Ref_seq=scaffold2212_contigs=10, transcript_loc=scaffold2212_contigs=10:264737-264952 Augustus predicted protein sequence Tobacco scaffold2212_contigs=10~264737-264952 DUF721 PF05258.7 g96073.t1 - 0.17 12.1 0.2 10 6.4 0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF721) | Ref_seq=scaffold2092_contigs=15, transcript_loc=scaffold2092_contigs=15:7805-8779 Augustus predicted protein sequence Tobacco scaffold2092_contigs=15~7805-8779 CT47 PF15623.1 g109751.t1 - 0.046 13.4 9 0.061 13 6.3 1.1 1 0 0 1 1 1 0 Cancer/testis gene family 47 | Ref_seq=scaffold2516_contigs=13, transcript_loc=scaffold2516_contigs=13:36379-38089 Augustus predicted protein sequence Tobacco scaffold2516_contigs=13~36379-38089 TRAP_alpha PF03896.11 g102535.t1 - 0.42 9.5 4 0.89 8.4 2.8 1.5 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit | Ref_seq=scaffold2255_contigs=20, transcript_loc=scaffold2255_contigs=20:17123-18079 Augustus predicted protein sequence Tobacco scaffold2255_contigs=20~17123-18079 Transposase_28 PF04195.7 g79874.t1 - 0.00045 19.5 0 0.00065 19 0 1.2 1 0 0 1 1 1 1 Putative gypsy type transposon | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:75917-77046 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~75917-77046 HMA PF00403.21 g125504.t1 - 0.033 14.3 0 0.046 13.8 0 1.2 1 0 0 1 1 1 0 Heavy-metal-associated domain | Ref_seq=scaffold2775_contigs=1, transcript_loc=scaffold2775_contigs=1:77905-78427 Augustus predicted protein sequence Tobacco scaffold2775_contigs=1~77905-78427 ZipA_C PF04354.8 g62271.t1 - 0.0046 16.4 0 0.46 9.9 0 2.4 1 1 0 2 2 2 2 ZipA, C-terminal FtsZ-binding domain | Ref_seq=scaffold1346_contigs=10, transcript_loc=scaffold1346_contigs=10:319255-320008 Augustus predicted protein sequence Tobacco scaffold1346_contigs=10~319255-320008 Prp19_bind PF06991.6 g106274.t1 - 2.1 7.5 9.5 3.8 6.7 6.6 1.4 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain | Ref_seq=scaffold2372_contigs=2, transcript_loc=scaffold2372_contigs=2:64123-65793 Augustus predicted protein sequence Tobacco scaffold2372_contigs=2~64123-65793 ATP-grasp_2 PF08442.5 g83726.t1 - 0.085 12.2 0 0.11 11.8 0 1.2 1 0 0 1 1 1 0 ATP-grasp domain | Ref_seq=scaffold1802_contigs=7, transcript_loc=scaffold1802_contigs=7:112685-113250 Augustus predicted protein sequence Tobacco scaffold1802_contigs=7~112685-113250 PRCC PF10253.4 g8265.t1 - 0.059 14 0.1 0.07 13.8 0.1 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting | Ref_seq=scaffold334_contigs=13, transcript_loc=scaffold334_contigs=13:62260-63390 Augustus predicted protein sequence Tobacco scaffold334_contigs=13~62260-63390 AAA_26 PF13500.1 g118859.t1 - 0.1 12.1 0 0.17 11.4 0 1.3 1 1 0 1 1 1 0 AAA domain | Ref_seq=scaffold2709_contigs=16, transcript_loc=scaffold2709_contigs=16:160468-161254 Augustus predicted protein sequence Tobacco scaffold2709_contigs=16~160468-161254 Vir_act_alpha_C PF10400.4 g9878.t1 - 0.0058 16.9 0.6 0.018 15.3 0.4 1.7 1 1 0 1 1 1 1 Virulence activator alpha C-term | Ref_seq=scaffold380_contigs=11, transcript_loc=scaffold380_contigs=11:249321-249632 Augustus predicted protein sequence Tobacco scaffold380_contigs=11~249321-249632 Lipase_bact_N PF12262.3 g98065.t1 - 0.0043 16.3 0 0.022 13.9 0 1.9 1 1 0 2 2 2 1 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold2151_contigs=4, transcript_loc=scaffold2151_contigs=4:133941-134666 Augustus predicted protein sequence Tobacco scaffold2151_contigs=4~133941-134666 HMA PF00403.21 g125506.t1 - 0.031 14.4 0.1 0.064 13.4 0.1 1.4 1 0 0 1 1 1 0 Heavy-metal-associated domain | Ref_seq=scaffold2775_contigs=1, transcript_loc=scaffold2775_contigs=1:82606-84319 Augustus predicted protein sequence Tobacco scaffold2775_contigs=1~82606-84319 MGS PF02142.17 g122930.t1 - 0.064 13.1 0 0.11 12.4 0 1.3 1 0 0 1 1 1 0 MGS-like domain | Ref_seq=scaffold2749_contigs=11, transcript_loc=scaffold2749_contigs=11:179648-180394 Augustus predicted protein sequence Tobacco scaffold2749_contigs=11~179648-180394 Myc_target_1 PF15179.1 g91575.t1 - 0.034 13.7 5.3 0.75 9.3 0.2 2.3 2 0 0 2 2 2 0 Myc target protein 1 | Ref_seq=scaffold1973_contigs=23, transcript_loc=scaffold1973_contigs=23:279810-282090 Augustus predicted protein sequence Tobacco scaffold1973_contigs=23~279810-282090 ATHILA PF03078.10 g123663.t1 - 0.019 13.5 0 0.021 13.4 0 1.2 1 0 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:244026-244439 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~244026-244439 bZIP_2 PF07716.10 g69552.t1 - 0.026 14.3 0.9 8.5 6.2 0.1 2.5 2 0 0 2 2 2 0 Basic region leucine zipper | Ref_seq=scaffold1490_contigs=23, transcript_loc=scaffold1490_contigs=23:400577-401483 Augustus predicted protein sequence Tobacco scaffold1490_contigs=23~400577-401483 DUF2970 PF11174.3 g39768.t1 - 0.0092 15.5 0.5 0.0092 15.5 0.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2970) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:197428-198178 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~197428-198178 zf-BED PF02892.10 g10967.t1 - 0.006 16.3 0.1 0.01 15.6 0.1 1.5 1 0 0 1 1 1 1 BED zinc finger | Ref_seq=scaffold398_contigs=4, transcript_loc=scaffold398_contigs=4:33155-33565 Augustus predicted protein sequence Tobacco scaffold398_contigs=4~33155-33565 DUF1451 PF07295.6 g3557.t1 - 0.056 13.2 4.4 0.061 13.1 3.1 1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) | Ref_seq=scaffold236_contigs=3, transcript_loc=scaffold236_contigs=3:8120-8368 Augustus predicted protein sequence Tobacco scaffold236_contigs=3~8120-8368 Sporozoite_P67 PF05642.6 g68190.t1 - 0.017 13 2.3 0.016 13.1 1.6 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen | Ref_seq=scaffold1467_contigs=10, transcript_loc=scaffold1467_contigs=10:325221-325613 Augustus predicted protein sequence Tobacco scaffold1467_contigs=10~325221-325613 Transposase_28 PF04195.7 g99375.t1 - 0.011 14.9 0 0.014 14.6 0 1.2 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:360357-360695 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~360357-360695 DUF641 PF04859.7 g124463.t1 - 0.0043 16.8 0.7 0.0057 16.4 0.5 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) | Ref_seq=scaffold2762_contigs=5, transcript_loc=scaffold2762_contigs=5:93650-94120 Augustus predicted protein sequence Tobacco scaffold2762_contigs=5~93650-94120 TAF1D PF15333.1 g117974.t1 - 0.019 14.7 6.3 0.022 14.5 4.4 1 1 0 0 1 1 1 0 TATA box-binding protein-associated factor 1D | Ref_seq=scaffold2697_contigs=36, transcript_loc=scaffold2697_contigs=36:174428-174664 Augustus predicted protein sequence Tobacco scaffold2697_contigs=36~174428-174664 DUF3836 PF12930.2 g111239.t1 - 0.013 14.9 0.8 0.015 14.8 0.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF3836) | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:40171-40422 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~40171-40422 TFIIA PF03153.8 g84599.t1 - 0.014 15.3 0.5 0.018 14.9 0.3 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit | Ref_seq=scaffold1824_contigs=4, transcript_loc=scaffold1824_contigs=4:11337-12221 Augustus predicted protein sequence Tobacco scaffold1824_contigs=4~11337-12221 DUF4458 PF14660.1 g23830.t1 - 0.055 13.4 0.4 4.1 7.4 0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4458) | Ref_seq=scaffold654_contigs=10, transcript_loc=scaffold654_contigs=10:152526-153032 Augustus predicted protein sequence Tobacco scaffold654_contigs=10~152526-153032 Peroxin-13_N PF04088.8 g114693.t1 - 0.001 19 0.5 0.12 12.3 0.1 2.2 2 0 0 2 2 2 2 Peroxin 13, N-terminal region | Ref_seq=scaffold2652_contigs=8, transcript_loc=scaffold2652_contigs=8:206426-207184 Augustus predicted protein sequence Tobacco scaffold2652_contigs=8~206426-207184 Pex16 PF08610.5 g116755.t1 - 0.2 10.6 4.9 0.22 10.4 3.4 1.1 1 0 0 1 1 1 0 Peroxisomal membrane protein (Pex16) | Ref_seq=scaffold2674_contigs=11, transcript_loc=scaffold2674_contigs=11:90291-91443 Augustus predicted protein sequence Tobacco scaffold2674_contigs=11~90291-91443 BAT2_N PF07001.6 g81778.t1 - 0.071 13.4 0.3 0.09 13.1 0.2 1.2 1 0 0 1 1 1 0 BAT2 N-terminus | Ref_seq=scaffold1736_contigs=8, transcript_loc=scaffold1736_contigs=8:86103-86560 Augustus predicted protein sequence Tobacco scaffold1736_contigs=8~86103-86560 SBP56 PF05694.6 g5963.t1 - 0.0011 17.5 0 0.0013 17.3 0 1 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) | Ref_seq=scaffold286_contigs=6, transcript_loc=scaffold286_contigs=6:127828-128214 Augustus predicted protein sequence Tobacco scaffold286_contigs=6~127828-128214 Fn3_assoc PF13287.1 g56603.t1 - 0.081 13 0 1.7 8.7 0 2.1 2 0 0 2 2 2 0 Fn3 associated | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:449410-450440 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~449410-450440 Nop14 PF04147.7 g64780.t1 - 0.00057 17.9 1.5 0.00057 17.9 1.1 1.1 1 0 0 1 1 1 1 Nop14-like family | Ref_seq=scaffold1390_contigs=3, transcript_loc=scaffold1390_contigs=3:161182-161852 Augustus predicted protein sequence Tobacco scaffold1390_contigs=3~161182-161852 TMF_DNA_bd PF12329.3 g126257.t1 - 0.0036 17 2.4 0.006 16.3 1.7 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding | Ref_seq=scaffold2790_contigs=1, transcript_loc=scaffold2790_contigs=1:55534-56354 Augustus predicted protein sequence Tobacco scaffold2790_contigs=1~55534-56354 YesK PF14150.1 g22290.t1 - 0.098 12.7 0.7 0.14 12.2 0.5 1.2 1 0 0 1 1 1 0 YesK-like protein | Ref_seq=scaffold617_contigs=9, transcript_loc=scaffold617_contigs=9:64860-65907 Augustus predicted protein sequence Tobacco scaffold617_contigs=9~64860-65907 Exostosin PF03016.10 g29754.t1 - 0.059 12.4 0 0.068 12.2 0 1.1 1 0 0 1 1 1 0 Exostosin family | Ref_seq=scaffold767_contigs=5, transcript_loc=scaffold767_contigs=5:17951-18917 Augustus predicted protein sequence Tobacco scaffold767_contigs=5~17951-18917 DUF4201 PF13870.1 g128931.t1 - 0.0019 17.6 2.2 0.0052 16.2 1.3 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) | Ref_seq=scaffold2902_contigs=1, transcript_loc=scaffold2902_contigs=1:11624-12454 Augustus predicted protein sequence Tobacco scaffold2902_contigs=1~11624-12454 Pico_P1A PF02226.11 g36364.t1 - 0.079 12.7 0 0.079 12.7 0 2.4 3 1 0 3 3 3 0 Picornavirus coat protein (VP4) | Ref_seq=scaffold886_contigs=4, transcript_loc=scaffold886_contigs=4:283-1269 Augustus predicted protein sequence Tobacco scaffold886_contigs=4~283-1269 YABBY PF04690.8 g85863.t1 - 0.043 14 0.4 0.055 13.7 0.3 1.1 1 0 0 1 1 1 0 YABBY protein | Ref_seq=scaffold1840_contigs=10, transcript_loc=scaffold1840_contigs=10:11839-12450 Augustus predicted protein sequence Tobacco scaffold1840_contigs=10~11839-12450 CCDC155 PF14662.1 g50609.t1 - 0.0000052 26.1 4.5 0.0000068 25.8 3.1 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 | Ref_seq=scaffold1142_contigs=5, transcript_loc=scaffold1142_contigs=5:61155-61885 Augustus predicted protein sequence Tobacco scaffold1142_contigs=5~61155-61885 HpaP PF09483.5 g42618.t1 - 3.3 7.6 7.5 3.6 7.5 5.2 1.1 1 0 0 1 1 1 0 Type III secretion protein (HpaP) | Ref_seq=scaffold1010_contigs=27, transcript_loc=scaffold1010_contigs=27:175387-175740 Augustus predicted protein sequence Tobacco scaffold1010_contigs=27~175387-175740 DUF1170 PF06663.8 g10676.t1 - 0.071 13 0 0.11 12.3 0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1170) | Ref_seq=scaffold390_contigs=8, transcript_loc=scaffold390_contigs=8:208609-208956 Augustus predicted protein sequence Tobacco scaffold390_contigs=8~208609-208956 LMBR1 PF04791.11 g93870.t1 - 4.5 5.7 4.7 6.2 5.2 3.3 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:12201-13469 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~12201-13469 Synuclein PF01387.12 g126046.t1 - 0.19 11.6 2.7 0.28 11.1 1.9 1.2 1 0 0 1 1 1 0 Synuclein | Ref_seq=scaffold2786_contigs=1, transcript_loc=scaffold2786_contigs=1:42697-43200 Augustus predicted protein sequence Tobacco scaffold2786_contigs=1~42697-43200 Birna_RdRp PF04197.7 g33141.t1 - 0.16 9.9 0 0.16 9.9 0 1 1 0 0 1 1 1 0 Birnavirus RNA dependent RNA polymerase (VP1) | Ref_seq=scaffold825_contigs=10, transcript_loc=scaffold825_contigs=10:530494-530712 Augustus predicted protein sequence Tobacco scaffold825_contigs=10~530494-530712 RICTOR_N PF14664.1 g55477.t1 - 0.026 13.1 0 0.034 12.7 0 1.1 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, N-term | Ref_seq=scaffold1218_contigs=3, transcript_loc=scaffold1218_contigs=3:234913-235344 Augustus predicted protein sequence Tobacco scaffold1218_contigs=3~234913-235344 CMV_US PF08001.6 g97418.t1 - 0.013 14.5 0 0.017 14.1 0 1.1 1 0 0 1 1 1 0 CMV US | Ref_seq=scaffold2136_contigs=4, transcript_loc=scaffold2136_contigs=4:50698-51030 Augustus predicted protein sequence Tobacco scaffold2136_contigs=4~50698-51030 EPO_TPO PF00758.13 g96464.t1 - 0.062 12.9 0 0.11 12.1 0 1.4 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin | Ref_seq=scaffold2109_contigs=23, transcript_loc=scaffold2109_contigs=23:46169-46705 Augustus predicted protein sequence Tobacco scaffold2109_contigs=23~46169-46705 DUF427 PF04248.7 g98896.t1 - 0.008 15.8 0 0.0085 15.7 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) | Ref_seq=scaffold2167_contigs=3, transcript_loc=scaffold2167_contigs=3:3473-3739 Augustus predicted protein sequence Tobacco scaffold2167_contigs=3~3473-3739 Toxin_39 PF15500.1 g120133.t1 - 0.092 12.8 0 0.1 12.7 0 1.1 1 0 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:108273-108512 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~108273-108512 zf-RVT PF13966.1 g18755.t1 - 0.047 13.9 0.8 0.11 12.8 0.1 1.8 1 1 1 2 2 2 0 zinc-binding in reverse transcriptase | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:674499-674810 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~674499-674810 zf-CCHC PF00098.18 g80248.t1 - 0.0001 22 0.2 0.0001 22 0.2 1.9 2 0 0 2 2 2 1 Zinc knuckle | Ref_seq=scaffold1713_contigs=7, transcript_loc=scaffold1713_contigs=7:43835-44062 Augustus predicted protein sequence Tobacco scaffold1713_contigs=7~43835-44062 DUF1201 PF06716.6 g74771.t1 - 0.091 12.5 0.8 0.26 11.1 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) | Ref_seq=scaffold1564_contigs=8, transcript_loc=scaffold1564_contigs=8:56117-56644 Augustus predicted protein sequence Tobacco scaffold1564_contigs=8~56117-56644 Peptidase_S46 PF10459.4 g123046.t1 - 0.016 13.6 2.5 0.017 13.5 1.7 1 1 0 0 1 1 1 0 Peptidase S46 | Ref_seq=scaffold2753_contigs=11, transcript_loc=scaffold2753_contigs=11:8954-9450 Augustus predicted protein sequence Tobacco scaffold2753_contigs=11~8954-9450 EBV-NA3 PF05009.7 g129198.t1 - 1.2 8.3 3 1.2 8.3 2.1 1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold2925_contigs=1, transcript_loc=scaffold2925_contigs=1:1-159 Augustus predicted protein sequence Tobacco scaffold2925_contigs=1~1-159 TMF_TATA_bd PF12325.3 g27793.t1 - 0.21 11.3 2.5 0.3 10.8 1.8 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding | Ref_seq=scaffold731_contigs=13, transcript_loc=scaffold731_contigs=13:310033-310748 Augustus predicted protein sequence Tobacco scaffold731_contigs=13~310033-310748 UBN2 PF14223.1 g30531.t1 - 0.00079 19.2 0.8 0.035 13.8 0.1 2.1 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type | Ref_seq=scaffold774_contigs=20, transcript_loc=scaffold774_contigs=20:1118503-1118885 Augustus predicted protein sequence Tobacco scaffold774_contigs=20~1118503-1118885 Tup_N PF08581.5 g115297.t1 - 0.019 15.1 0.3 0.028 14.6 0.2 1.2 1 0 0 1 1 1 0 Tup N-terminal | Ref_seq=scaffold2660_contigs=23, transcript_loc=scaffold2660_contigs=23:22393-22689 Augustus predicted protein sequence Tobacco scaffold2660_contigs=23~22393-22689 SPOUT_MTase_2 PF14419.1 g83857.t1 - 0.04 13.1 0.2 0.061 12.5 0.1 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP | Ref_seq=scaffold1809_contigs=8, transcript_loc=scaffold1809_contigs=8:73035-73799 Augustus predicted protein sequence Tobacco scaffold1809_contigs=8~73035-73799 CarbpepA_inh PF02977.10 g68345.t1 - 0.045 13.3 0 0.085 12.4 0 1.5 1 0 0 1 1 1 0 Carboxypeptidase A inhibitor | Ref_seq=scaffold1473_contigs=6, transcript_loc=scaffold1473_contigs=6:93266-93744 Augustus predicted protein sequence Tobacco scaffold1473_contigs=6~93266-93744 PsbP PF01789.11 g30708.t1 - 0.059 12.8 0 0.093 12.1 0 1.2 1 0 0 1 1 1 0 PsbP | Ref_seq=scaffold778_contigs=11, transcript_loc=scaffold778_contigs=11:132669-133211 Augustus predicted protein sequence Tobacco scaffold778_contigs=11~132669-133211 CAP_N PF01213.14 g101085.t1 - 7 5.8 6.8 3.2 6.9 3.2 1.5 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal | Ref_seq=scaffold2208_contigs=7, transcript_loc=scaffold2208_contigs=7:42269-44223 Augustus predicted protein sequence Tobacco scaffold2208_contigs=7~42269-44223 Lectin_N PF03954.9 g47106.t1 - 0.0038 16.6 0.1 0.0053 16.1 0.1 1.1 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:26419-27022 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~26419-27022 KH_5 PF13184.1 g58080.t1 - 0.12 12.2 0 0.25 11.1 0 1.5 1 0 0 1 1 1 0 NusA-like KH domain | Ref_seq=scaffold1266_contigs=7, transcript_loc=scaffold1266_contigs=7:318126-319054 Augustus predicted protein sequence Tobacco scaffold1266_contigs=7~318126-319054 DUF3070 PF11270.3 g80507.t1 - 1.3 8.8 4.8 7 6.5 1.8 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3070) | Ref_seq=scaffold1717_contigs=10, transcript_loc=scaffold1717_contigs=10:163663-163866 Augustus predicted protein sequence Tobacco scaffold1717_contigs=10~163663-163866 DUF2613 PF11021.3 g41143.t1 - 0.0068 16 4.2 0.012 15.3 2.9 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2613) | Ref_seq=scaffold983_contigs=13, transcript_loc=scaffold983_contigs=13:753018-755059 Augustus predicted protein sequence Tobacco scaffold983_contigs=13~753018-755059 Fructosamin_kin PF03881.9 g65084.t1 - 0.076 11.9 0 0.086 11.8 0 1 1 0 0 1 1 1 0 Fructosamine kinase | Ref_seq=scaffold1396_contigs=6, transcript_loc=scaffold1396_contigs=6:53038-54706 Augustus predicted protein sequence Tobacco scaffold1396_contigs=6~53038-54706 FlxA PF14282.1 g29998.t1 - 0.047 13.6 1.2 0.075 12.9 0.8 1.3 1 0 0 1 1 1 0 FlxA-like protein | Ref_seq=scaffold768_contigs=4, transcript_loc=scaffold768_contigs=4:184917-185324 Augustus predicted protein sequence Tobacco scaffold768_contigs=4~184917-185324 DBINO PF13892.1 g25584.t1 - 0.019 15 2.2 0.018 15 1.5 1.1 1 0 0 1 1 1 0 DNA-binding domain | Ref_seq=scaffold701_contigs=5, transcript_loc=scaffold701_contigs=5:48974-49729 Augustus predicted protein sequence Tobacco scaffold701_contigs=5~48974-49729 GRP PF07172.6 g94519.t1 - 0.41 11.1 7.8 0.46 10.9 5.4 1.2 1 0 0 1 1 1 0 Glycine rich protein family | Ref_seq=scaffold2042_contigs=5, transcript_loc=scaffold2042_contigs=5:82890-83123 Augustus predicted protein sequence Tobacco scaffold2042_contigs=5~82890-83123 HALZ PF02183.13 g93990.t1 - 0.02 14.6 12.8 0.08 12.6 0.5 3 2 2 1 3 3 3 0 Homeobox associated leucine zipper | Ref_seq=scaffold2034_contigs=16, transcript_loc=scaffold2034_contigs=16:347777-348307 Augustus predicted protein sequence Tobacco scaffold2034_contigs=16~347777-348307 Upf2 PF04050.9 g8203.t1 - 0.12 12.1 2.1 0.14 11.9 1.5 1.2 1 0 0 1 1 1 0 Up-frameshift suppressor 2 | Ref_seq=scaffold331_contigs=3, transcript_loc=scaffold331_contigs=3:82847-83283 Augustus predicted protein sequence Tobacco scaffold331_contigs=3~82847-83283 RNA_polI_A34 PF08208.6 g24945.t1 - 0.15 11.7 0.5 0.15 11.6 0.3 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 | Ref_seq=scaffold682_contigs=5, transcript_loc=scaffold682_contigs=5:65743-65943 Augustus predicted protein sequence Tobacco scaffold682_contigs=5~65743-65943 DUF4219 PF13961.1 g23687.t1 - 0.000026 23.5 1.1 0.000061 22.3 0.8 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold651_contigs=13, transcript_loc=scaffold651_contigs=13:413666-413866 Augustus predicted protein sequence Tobacco scaffold651_contigs=13~413666-413866 FH2 PF02181.18 g43319.t1 - 0.0091 14.9 0.1 0.011 14.6 0.1 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain | Ref_seq=scaffold1014_contigs=6, transcript_loc=scaffold1014_contigs=6:230-523 Augustus predicted protein sequence Tobacco scaffold1014_contigs=6~230-523 BCDHK_Adom3 PF10436.4 g27450.t1 - 0.031 13.8 0.2 0.038 13.4 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase | Ref_seq=scaffold725_contigs=8, transcript_loc=scaffold725_contigs=8:141996-142614 Augustus predicted protein sequence Tobacco scaffold725_contigs=8~141996-142614 Polysacc_lyase PF14099.1 g45140.t1 - 0.016 14.8 2.2 0.018 14.7 1.5 1.1 1 0 0 1 1 1 0 Polysaccharide lyase | Ref_seq=scaffold1042_contigs=14, transcript_loc=scaffold1042_contigs=14:524442-524696 Augustus predicted protein sequence Tobacco scaffold1042_contigs=14~524442-524696 Vps5 PF09325.5 g35169.t1 - 0.023 13.9 0.2 0.029 13.6 0.1 1 1 0 0 1 1 1 0 Vps5 C terminal like | Ref_seq=scaffold865_contigs=7, transcript_loc=scaffold865_contigs=7:142991-143395 Augustus predicted protein sequence Tobacco scaffold865_contigs=7~142991-143395 DUF1975 PF09318.5 g127038.t1 - 0.0019 17.8 0 0.0019 17.8 0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1975) | Ref_seq=scaffold2812_contigs=1, transcript_loc=scaffold2812_contigs=1:19233-19519 Augustus predicted protein sequence Tobacco scaffold2812_contigs=1~19233-19519 Ribosomal_60s PF00428.14 g92989.t1 - 0.04 14.3 0.1 0.043 14.2 0.1 1.1 1 0 0 1 1 1 0 60s Acidic ribosomal protein | Ref_seq=scaffold2001_contigs=20, transcript_loc=scaffold2001_contigs=20:416831-417049 Augustus predicted protein sequence Tobacco scaffold2001_contigs=20~416831-417049 Myb_DNA-bind_3 PF12776.2 g64236.t1 - 0.087 13.4 0.1 1.3 9.7 0 2 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:204038-204487 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~204038-204487 DUF3396 PF11876.3 g62915.t1 - 0.11 11.5 0.2 0.16 11 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3396) | Ref_seq=scaffold1361_contigs=6, transcript_loc=scaffold1361_contigs=6:23095-23853 Augustus predicted protein sequence Tobacco scaffold1361_contigs=6~23095-23853 CTC1_2 PF15491.1 g35315.t1 - 0.15 11 1.6 0.16 10.9 1.1 1.1 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 | Ref_seq=scaffold866_contigs=9, transcript_loc=scaffold866_contigs=9:25312-25614 Augustus predicted protein sequence Tobacco scaffold866_contigs=9~25312-25614 DUF3222 PF11519.3 g115124.t1 - 0.045 13.7 0 0.089 12.7 0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3222) | Ref_seq=scaffold2659_contigs=6, transcript_loc=scaffold2659_contigs=6:51212-55316 Augustus predicted protein sequence Tobacco scaffold2659_contigs=6~51212-55316 DUF3437 PF11919.3 g61159.t1 - 0.037 13.7 0 0.073 12.7 0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) | Ref_seq=scaffold1328_contigs=9, transcript_loc=scaffold1328_contigs=9:242755-244611 Augustus predicted protein sequence Tobacco scaffold1328_contigs=9~242755-244611 MtrB PF05440.7 g8799.t1 - 0.028 14.4 0 0.035 14.1 0 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B | Ref_seq=scaffold344_contigs=14, transcript_loc=scaffold344_contigs=14:202199-202923 Augustus predicted protein sequence Tobacco scaffold344_contigs=14~202199-202923 DUF4475 PF14753.1 g64368.t1 - 0.099 12.1 0.2 3.7 6.9 0.1 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4475) | Ref_seq=scaffold1386_contigs=4, transcript_loc=scaffold1386_contigs=4:115429-116057 Augustus predicted protein sequence Tobacco scaffold1386_contigs=4~115429-116057 zf-RING_2 PF13639.1 g91700.t1 - 0.0031 17.3 4.5 0.0034 17.1 2 1.9 2 0 0 2 2 2 1 Ring finger domain | Ref_seq=scaffold1977_contigs=8, transcript_loc=scaffold1977_contigs=8:75557-75853 Augustus predicted protein sequence Tobacco scaffold1977_contigs=8~75557-75853 Pil1 PF13805.1 g68398.t1 - 0.21 10.6 0.2 0.21 10.6 0.1 1.7 2 0 0 2 2 2 0 Eisosome component PIL1 | Ref_seq=scaffold1476_contigs=2, transcript_loc=scaffold1476_contigs=2:32457-32882 Augustus predicted protein sequence Tobacco scaffold1476_contigs=2~32457-32882 DUF1043 PF06295.7 g117523.t1 - 0.026 14.1 0.4 0.032 13.8 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) | Ref_seq=scaffold2688_contigs=4, transcript_loc=scaffold2688_contigs=4:61090-61858 Augustus predicted protein sequence Tobacco scaffold2688_contigs=4~61090-61858 GDH_N PF12466.3 g118594.t1 - 0.041 13.8 0.2 0.07 13.1 0.1 1.5 1 1 0 1 1 1 0 Glutamate dehydrogenase N terminal | Ref_seq=scaffold2704_contigs=20, transcript_loc=scaffold2704_contigs=20:107972-108220 Augustus predicted protein sequence Tobacco scaffold2704_contigs=20~107972-108220 DDE_Tnp_IS66 PF03050.9 g92239.t1 - 0.064 12.4 0 0.068 12.3 0 1.1 1 0 0 1 1 1 0 Transposase IS66 family | Ref_seq=scaffold1986_contigs=11, transcript_loc=scaffold1986_contigs=11:81582-81896 Augustus predicted protein sequence Tobacco scaffold1986_contigs=11~81582-81896 Filament PF00038.16 g119198.t1 - 0.022 14.2 2.2 0.026 14 1.5 1.1 1 0 0 1 1 1 0 Intermediate filament protein | Ref_seq=scaffold2710_contigs=7, transcript_loc=scaffold2710_contigs=7:92825-93503 Augustus predicted protein sequence Tobacco scaffold2710_contigs=7~92825-93503 Mu-like_Pro PF10123.4 g68246.t1 - 0.035 13.5 3 0.036 13.5 2.1 1.1 1 0 0 1 1 1 0 Mu-like prophage I protein | Ref_seq=scaffold1472_contigs=11, transcript_loc=scaffold1472_contigs=11:8769-9248 Augustus predicted protein sequence Tobacco scaffold1472_contigs=11~8769-9248 RVT_3 PF13456.1 g24243.t1 - 0.00012 21.7 0.1 0.00024 20.7 0 1.6 2 0 0 2 2 2 1 Reverse transcriptase-like | Ref_seq=scaffold668_contigs=10, transcript_loc=scaffold668_contigs=10:306749-308068 Augustus predicted protein sequence Tobacco scaffold668_contigs=10~306749-308068 Dodecin PF07311.7 g46327.t1 - 0.12 12.4 0 0.34 10.9 0 1.8 1 1 1 2 2 2 0 Dodecin | Ref_seq=scaffold1069_contigs=31, transcript_loc=scaffold1069_contigs=31:95597-96058 Augustus predicted protein sequence Tobacco scaffold1069_contigs=31~95597-96058 CDRN PF05174.7 g113049.t1 - 0.97 8.9 4.2 8.5 5.9 0.2 2.5 2 0 0 2 2 2 0 Cysteine-rich D. radiodurans N terminus | Ref_seq=scaffold2619_contigs=18, transcript_loc=scaffold2619_contigs=18:233864-236330 Augustus predicted protein sequence Tobacco scaffold2619_contigs=18~233864-236330 Toxin_39 PF15500.1 g85180.t1 - 0.1 12.7 0.2 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative RNase-like toxin | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:390781-391209 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~390781-391209 IFP_35_N PF07334.8 g53611.t1 - 0.029 14.3 1.5 0.077 12.9 0.5 2.1 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus | Ref_seq=scaffold1188_contigs=5, transcript_loc=scaffold1188_contigs=5:198551-199816 Augustus predicted protein sequence Tobacco scaffold1188_contigs=5~198551-199816 DUF4379 PF14311.1 g9039.t1 - 0.094 12.5 0 0.14 12 0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) | Ref_seq=scaffold350_contigs=4, transcript_loc=scaffold350_contigs=4:119284-119568 Augustus predicted protein sequence Tobacco scaffold350_contigs=4~119284-119568 gag_pre-integrs PF13976.1 g80764.t1 - 0.00000038 29.6 0.1 0.00000058 29 0 1.3 1 0 0 1 1 1 1 GAG-pre-integrase domain | Ref_seq=scaffold1720_contigs=9, transcript_loc=scaffold1720_contigs=9:248857-252258 Augustus predicted protein sequence Tobacco scaffold1720_contigs=9~248857-252258 Stathmin PF00836.14 g79936.t1 - 0.00077 19.1 3 0.0011 18.5 2.1 1.3 1 0 0 1 1 1 1 Stathmin family | Ref_seq=scaffold1703_contigs=10, transcript_loc=scaffold1703_contigs=10:288485-289257 Augustus predicted protein sequence Tobacco scaffold1703_contigs=10~288485-289257 Retrotrans_gag PF03732.12 g64225.t1 - 0.22 11.6 1 0.22 11.6 0 1.5 2 0 0 2 2 2 0 Retrotransposon gag protein | Ref_seq=scaffold1385_contigs=12, transcript_loc=scaffold1385_contigs=12:175132-175398 Augustus predicted protein sequence Tobacco scaffold1385_contigs=12~175132-175398 PAS_7 PF12860.2 g112136.t1 - 0.0014 18.6 0 0.38 10.7 0 2.3 2 0 0 2 2 2 2 PAS fold | Ref_seq=scaffold2605_contigs=63, transcript_loc=scaffold2605_contigs=63:34005-37084 Augustus predicted protein sequence Tobacco scaffold2605_contigs=63~34005-37084 Apolipoprotein PF01442.13 g5158.t1 - 0.000011 25 5.8 0.000014 24.7 4 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain | Ref_seq=scaffold272_contigs=1, transcript_loc=scaffold272_contigs=1:40172-41286 Augustus predicted protein sequence Tobacco scaffold272_contigs=1~40172-41286 End_N_terminal PF12218.3 g106363.t1 - 0.027 13.9 0 0.052 13 0 1.4 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase | Ref_seq=scaffold2373_contigs=10, transcript_loc=scaffold2373_contigs=10:32352-32771 Augustus predicted protein sequence Tobacco scaffold2373_contigs=10~32352-32771 EBV-NA3 PF05009.7 g15786.t1 - 0.065 12.4 2.2 0.079 12.2 1.5 1.1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) | Ref_seq=scaffold503_contigs=7, transcript_loc=scaffold503_contigs=7:297099-298805 Augustus predicted protein sequence Tobacco scaffold503_contigs=7~297099-298805 Arch_fla_DE PF04659.8 g47091.t1 - 0.0065 16.2 0 3.7 7.4 0 2.1 2 0 0 2 2 2 2 Archaeal flagella protein | Ref_seq=scaffold1086_contigs=9, transcript_loc=scaffold1086_contigs=9:22933-23385 Augustus predicted protein sequence Tobacco scaffold1086_contigs=9~22933-23385 YqhR PF11085.3 g64478.t1 - 0.12 11.8 0 0.14 11.7 0 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR | Ref_seq=scaffold1387_contigs=13, transcript_loc=scaffold1387_contigs=13:179795-180013 Augustus predicted protein sequence Tobacco scaffold1387_contigs=13~179795-180013 Transposase_28 PF04195.7 g96970.t1 - 0.046 13 0 0.093 12 0 1.5 1 0 0 1 1 1 0 Putative gypsy type transposon | Ref_seq=scaffold2126_contigs=18, transcript_loc=scaffold2126_contigs=18:200205-202456 Augustus predicted protein sequence Tobacco scaffold2126_contigs=18~200205-202456 DUF2694 PF10904.3 g51459.t1 - 0.0046 16.9 0.4 0.0096 15.9 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2694) | Ref_seq=scaffold1155_contigs=5, transcript_loc=scaffold1155_contigs=5:94545-95228 Augustus predicted protein sequence Tobacco scaffold1155_contigs=5~94545-95228 pRN1_helical PF13010.1 g48686.t1 - 0.11 12 0 0.16 11.5 0 1.1 1 0 0 1 1 1 0 Primase helical domain | Ref_seq=scaffold1109_contigs=8, transcript_loc=scaffold1109_contigs=8:149517-150010 Augustus predicted protein sequence Tobacco scaffold1109_contigs=8~149517-150010 Egg_lysin PF01303.12 g16267.t1 - 0.12 12.3 0 0.14 12.1 0 1.1 1 0 0 1 1 1 0 Egg lysin (Sperm-lysin) | Ref_seq=scaffold511_contigs=4, transcript_loc=scaffold511_contigs=4:44369-44677 Augustus predicted protein sequence Tobacco scaffold511_contigs=4~44369-44677 DUF4073 PF13285.1 g61359.t1 - 0.077 12.4 0 0.077 12.4 0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4073) | Ref_seq=scaffold1332_contigs=3, transcript_loc=scaffold1332_contigs=3:51038-51253 Augustus predicted protein sequence Tobacco scaffold1332_contigs=3~51038-51253 NAM-associated PF14303.1 g104029.t1 - 0.0023 18.2 1.5 0.0033 17.7 1 1.2 1 0 0 1 1 1 1 No apical meristem-associated C-terminal domain | Ref_seq=scaffold2325_contigs=7, transcript_loc=scaffold2325_contigs=7:163604-164023 Augustus predicted protein sequence Tobacco scaffold2325_contigs=7~163604-164023 DUF479 PF04336.7 g127706.t1 - 0.1 12.6 0.1 0.16 12 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF479 | Ref_seq=scaffold2834_contigs=1, transcript_loc=scaffold2834_contigs=1:21551-22237 Augustus predicted protein sequence Tobacco scaffold2834_contigs=1~21551-22237 Tropomyosin PF00261.15 g21058.t1 - 0.15 11.1 0.1 0.17 10.9 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:356358-356807 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~356358-356807 FerA PF08165.6 g18607.t1 - 0.066 12.8 0 0.1 12.2 0 1.3 1 0 0 1 1 1 0 FerA (NUC095) domain | Ref_seq=scaffold556_contigs=11, transcript_loc=scaffold556_contigs=11:298190-298477 Augustus predicted protein sequence Tobacco scaffold556_contigs=11~298190-298477 DUF1517 PF07466.6 g57513.t1 - 1.4 7.8 3.4 1.6 7.6 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) | Ref_seq=scaffold1251_contigs=2, transcript_loc=scaffold1251_contigs=2:14254-14541 Augustus predicted protein sequence Tobacco scaffold1251_contigs=2~14254-14541 AHSA1 PF08327.6 g47778.t1 - 0.092 12.8 0.1 0.29 11.2 0 1.8 1 1 0 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein | Ref_seq=scaffold1101_contigs=16, transcript_loc=scaffold1101_contigs=16:59586-60448 Augustus predicted protein sequence Tobacco scaffold1101_contigs=16~59586-60448 DUF3302 PF11742.3 g123851.t1 - 0.038 13.8 0.4 0.063 13.1 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3302) | Ref_seq=scaffold2761_contigs=35, transcript_loc=scaffold2761_contigs=35:737372-737689 Augustus predicted protein sequence Tobacco scaffold2761_contigs=35~737372-737689 MORN PF02493.15 g59968.t1 - 0.78 9.5 3.1 14 5.6 2.1 2.7 1 1 0 1 1 1 0 MORN repeat | Ref_seq=scaffold1300_contigs=11, transcript_loc=scaffold1300_contigs=11:329932-331060 Augustus predicted protein sequence Tobacco scaffold1300_contigs=11~329932-331060 Apolipo_F PF15148.1 g118245.t1 - 0.14 11.4 0.1 0.16 11.2 0 1.1 1 0 0 1 1 1 0 Apolipoprotein F | Ref_seq=scaffold2701_contigs=22, transcript_loc=scaffold2701_contigs=22:192816-193196 Augustus predicted protein sequence Tobacco scaffold2701_contigs=22~192816-193196 Ebola_NP PF05505.7 g85321.t1 - 0.3 9.1 7 0.4 8.6 4.9 1.1 1 0 0 1 1 1 0 Ebola nucleoprotein | Ref_seq=scaffold1832_contigs=5, transcript_loc=scaffold1832_contigs=5:200380-202154 Augustus predicted protein sequence Tobacco scaffold1832_contigs=5~200380-202154 Sgf11 PF08209.6 g24721.t1 - 0.048 12.9 0.1 0.084 12.2 0.1 1.4 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) | Ref_seq=scaffold675_contigs=2, transcript_loc=scaffold675_contigs=2:111968-112869 Augustus predicted protein sequence Tobacco scaffold675_contigs=2~111968-112869 MRP-S22 PF10245.4 g92696.t1 - 0.13 11.6 0 0.16 11.3 0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 | Ref_seq=scaffold1994_contigs=7, transcript_loc=scaffold1994_contigs=7:309032-309403 Augustus predicted protein sequence Tobacco scaffold1994_contigs=7~309032-309403 CAF1A PF12253.3 g111954.t1 - 0.0041 17.2 9.1 0.0054 16.8 6.3 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 subunit A | Ref_seq=scaffold2598_contigs=24, transcript_loc=scaffold2598_contigs=24:167902-168231 Augustus predicted protein sequence Tobacco scaffold2598_contigs=24~167902-168231 Adeno_PVIII PF01310.13 g58448.t1 - 0.068 12.9 0 0.12 12.1 0 1.4 1 0 0 1 1 1 0 Adenovirus hexon associated protein, protein VIII | Ref_seq=scaffold1271_contigs=3, transcript_loc=scaffold1271_contigs=3:66731-69841 Augustus predicted protein sequence Tobacco scaffold1271_contigs=3~66731-69841 DUF2073 PF09846.4 g128561.t1 - 0.013 15.1 0 0.016 14.8 0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) | Ref_seq=scaffold2875_contigs=1, transcript_loc=scaffold2875_contigs=1:34367-35269 Augustus predicted protein sequence Tobacco scaffold2875_contigs=1~34367-35269 DUF2664 PF10867.3 g71331.t1 - 0.11 13.1 0.9 0.15 12.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2664) | Ref_seq=scaffold1500_contigs=20, transcript_loc=scaffold1500_contigs=20:540851-541477 Augustus predicted protein sequence Tobacco scaffold1500_contigs=20~540851-541477 ATHILA PF03078.10 g25313.t1 - 0.016 13.8 0.3 0.028 12.9 0.2 1.4 1 1 0 1 1 1 0 ATHILA ORF-1 family | Ref_seq=scaffold694_contigs=2, transcript_loc=scaffold694_contigs=2:47192-47822 Augustus predicted protein sequence Tobacco scaffold694_contigs=2~47192-47822 DUF3390 PF11870.3 g39828.t1 - 0.026 14.4 0 0.051 13.5 0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3390) | Ref_seq=scaffold961_contigs=8, transcript_loc=scaffold961_contigs=8:312206-312529 Augustus predicted protein sequence Tobacco scaffold961_contigs=8~312206-312529 O-ag_pol_Wzy PF14296.1 g24603.t1 - 0.15 10.5 3.2 0.17 10.4 2.2 1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy | Ref_seq=scaffold674_contigs=5, transcript_loc=scaffold674_contigs=5:88985-89311 Augustus predicted protein sequence Tobacco scaffold674_contigs=5~88985-89311 Calsequestrin PF01216.12 g37286.t1 - 0.042 12.6 0 0.058 12.1 0 1.1 1 0 0 1 1 1 0 Calsequestrin | Ref_seq=scaffold920_contigs=3, transcript_loc=scaffold920_contigs=3:12750-13244 Augustus predicted protein sequence Tobacco scaffold920_contigs=3~12750-13244 Nucleoplasmin PF03066.10 g3710.t1 - 0.052 13 1.2 0.062 12.8 0.8 1.2 1 0 0 1 1 1 0 Nucleoplasmin | Ref_seq=scaffold238_contigs=5, transcript_loc=scaffold238_contigs=5:205299-206802 Augustus predicted protein sequence Tobacco scaffold238_contigs=5~205299-206802 Vfa1 PF08432.5 g59517.t1 - 4.6 7.2 21.8 5 7.1 15.1 1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 | Ref_seq=scaffold1292_contigs=11, transcript_loc=scaffold1292_contigs=11:239954-240196 Augustus predicted protein sequence Tobacco scaffold1292_contigs=11~239954-240196 Soyouz_module PF14313.1 g38009.t1 - 0.0031 17 0.4 0.0044 16.5 0.3 1.3 1 0 0 1 1 1 1 N-terminal region of Paramyxovirinae phosphoprotein (P) | Ref_seq=scaffold930_contigs=4, transcript_loc=scaffold930_contigs=4:13732-13959 Augustus predicted protein sequence Tobacco scaffold930_contigs=4~13732-13959 PAP2_3 PF14378.1 g24359.t1 - 0.12 11.8 0.1 0.17 11.4 0.1 1.1 1 0 0 1 1 1 0 PAP2 superfamily | Ref_seq=scaffold671_contigs=7, transcript_loc=scaffold671_contigs=7:45549-46093 Augustus predicted protein sequence Tobacco scaffold671_contigs=7~45549-46093 Lipase_bact_N PF12262.3 g59298.t1 - 0.0082 15.3 0.1 0.19 10.8 0 2.1 1 1 1 2 2 2 2 Bacterial virulence factor lipase N-terminal | Ref_seq=scaffold1287_contigs=6, transcript_loc=scaffold1287_contigs=6:141264-142178 Augustus predicted protein sequence Tobacco scaffold1287_contigs=6~141264-142178 ExoD PF06055.7 g17214.t1 - 0.16 11.1 1.5 0.15 11.1 0.6 1.3 1 1 0 1 1 1 0 Exopolysaccharide synthesis, ExoD | Ref_seq=scaffold528_contigs=4, transcript_loc=scaffold528_contigs=4:181903-182279 Augustus predicted protein sequence Tobacco scaffold528_contigs=4~181903-182279 zf-CCHC_5 PF14787.1 g21089.t1 - 0.27 10.7 2.3 0.29 10.6 0.1 2.3 2 1 0 2 2 2 0 GAG-polyprotein viral zinc-finger | Ref_seq=scaffold586_contigs=6, transcript_loc=scaffold586_contigs=6:444382-444630 Augustus predicted protein sequence Tobacco scaffold586_contigs=6~444382-444630 TRH PF05438.7 g76027.t1 - 0.026 13.9 0.8 0.031 13.6 0.6 1.2 1 0 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) | Ref_seq=scaffold1608_contigs=6, transcript_loc=scaffold1608_contigs=6:53914-54162 Augustus predicted protein sequence Tobacco scaffold1608_contigs=6~53914-54162 DUF3184 PF11380.3 g8211.t1 - 0.11 10.4 0.7 0.12 10.2 0.5 1 1 0 0 1 1 1 0 Protein of unknown function (DUF3184) | Ref_seq=scaffold332_contigs=3, transcript_loc=scaffold332_contigs=3:3970-5977 Augustus predicted protein sequence Tobacco scaffold332_contigs=3~3970-5977 HrpB7 PF09486.5 g79676.t1 - 0.0011 18.9 0.6 0.0011 18.9 0.4 1.7 2 0 0 2 2 2 1 Bacterial type III secretion protein (HrpB7) | Ref_seq=scaffold1700_contigs=3, transcript_loc=scaffold1700_contigs=3:8730-12179 Augustus predicted protein sequence Tobacco scaffold1700_contigs=3~8730-12179 DUF1510 PF07423.6 g126916.t1 - 0.14 11.5 7.2 0.17 11.2 5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) | Ref_seq=scaffold2808_contigs=1, transcript_loc=scaffold2808_contigs=1:55574-56643 Augustus predicted protein sequence Tobacco scaffold2808_contigs=1~55574-56643 PTS_EIIB PF00367.15 g40817.t1 - 0.14 11.4 0.2 0.28 10.4 0 1.5 2 0 0 2 2 2 0 phosphotransferase system, EIIB | Ref_seq=scaffold981_contigs=14, transcript_loc=scaffold981_contigs=14:277190-277540 Augustus predicted protein sequence Tobacco scaffold981_contigs=14~277190-277540 UBN2_2 PF14227.1 g31934.t1 - 0.0023 17.4 0 0.0024 17.4 0 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type | Ref_seq=scaffold801_contigs=2, transcript_loc=scaffold801_contigs=2:6016-6231 Augustus predicted protein sequence Tobacco scaffold801_contigs=2~6016-6231 A2M PF00207.17 g85611.t1 - 0.077 12.5 0 0.11 12 0 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin family | Ref_seq=scaffold1835_contigs=10, transcript_loc=scaffold1835_contigs=10:169335-169667 Augustus predicted protein sequence Tobacco scaffold1835_contigs=10~169335-169667 DUF1217 PF06748.7 g97708.t1 - 0.0063 16.6 2.8 0.13 12.3 0.4 2 1 1 1 2 2 2 2 Protein of unknown function (DUF1217) | Ref_seq=scaffold2145_contigs=33, transcript_loc=scaffold2145_contigs=33:7796-8246 Augustus predicted protein sequence Tobacco scaffold2145_contigs=33~7796-8246 zf-CCHC_4 PF14392.1 g63631.t1 - 0.055 13.1 0.8 0.082 12.5 0.5 1.3 1 0 0 1 1 1 0 Zinc knuckle | Ref_seq=scaffold1378_contigs=1, transcript_loc=scaffold1378_contigs=1:14628-14846 Augustus predicted protein sequence Tobacco scaffold1378_contigs=1~14628-14846 HiaBD2 PF15403.1 g49976.t1 - 0.11 12.6 0 0.14 12.2 0 1.3 1 0 0 1 1 1 0 HiaBD2_N domain of Trimeric autotransporter adhesin (GIN) | Ref_seq=scaffold1133_contigs=5, transcript_loc=scaffold1133_contigs=5:476325-476558 Augustus predicted protein sequence Tobacco scaffold1133_contigs=5~476325-476558 ATHILA PF03078.10 g20337.t1 - 0.000011 24.1 0.2 0.000013 24 0.1 1 1 0 0 1 1 1 1 ATHILA ORF-1 family | Ref_seq=scaffold582_contigs=8, transcript_loc=scaffold582_contigs=8:70009-70494 Augustus predicted protein sequence Tobacco scaffold582_contigs=8~70009-70494 Ribosomal_L11_N PF03946.9 g83421.t1 - 0.1 12 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11, N-terminal domain | Ref_seq=scaffold1792_contigs=8, transcript_loc=scaffold1792_contigs=8:114855-115426 Augustus predicted protein sequence Tobacco scaffold1792_contigs=8~114855-115426 AvrPphF-ORF-2 PF09143.5 g6801.t1 - 0.067 12.9 0 0.081 12.6 0 1.1 1 0 0 1 1 1 0 AvrPphF-ORF-2 | Ref_seq=scaffold304_contigs=1, transcript_loc=scaffold304_contigs=1:9639-10121 Augustus predicted protein sequence Tobacco scaffold304_contigs=1~9639-10121 DNA_pol_A_exo1 PF01612.15 g121972.t1 - 0.099 12.1 0 0.12 11.8 0 1.1 1 0 0 1 1 1 0 3'-5' exonuclease | Ref_seq=scaffold2739_contigs=11, transcript_loc=scaffold2739_contigs=11:205009-205692 Augustus predicted protein sequence Tobacco scaffold2739_contigs=11~205009-205692 SNAP-25 PF00835.14 g65065.t1 - 0.011 16.4 0.6 2.6 8.8 0.1 2.8 2 1 0 2 2 2 0 SNAP-25 family | Ref_seq=scaffold1395_contigs=11, transcript_loc=scaffold1395_contigs=11:31880-32689 Augustus predicted protein sequence Tobacco scaffold1395_contigs=11~31880-32689 Toxin_R_bind_C PF07951.7 g56427.t1 - 0.0049 16.5 0.1 0.0064 16.2 0 1.1 1 0 0 1 1 1 1 Clostridium neurotoxin, C-terminal receptor binding | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:115225-116616 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~115225-116616 PWI PF01480.12 g120108.t1 - 0.0087 16.1 0 0.013 15.5 0 1.2 1 0 0 1 1 1 1 PWI domain | Ref_seq=scaffold2720_contigs=16, transcript_loc=scaffold2720_contigs=16:47018-50845 Augustus predicted protein sequence Tobacco scaffold2720_contigs=16~47018-50845 Mononeg_mRNAcap PF14318.1 g111235.t1 - 0.06 12.3 0 0.065 12.2 0 1.1 1 0 0 1 1 1 0 Mononegavirales mRNA-capping region V | Ref_seq=scaffold2582_contigs=20, transcript_loc=scaffold2582_contigs=20:28831-29133 Augustus predicted protein sequence Tobacco scaffold2582_contigs=20~28831-29133 HNH_2 PF13391.1 g91257.t1 - 0.1 12.3 1 0.16 11.7 0.7 1.7 1 1 0 1 1 1 0 HNH endonuclease | Ref_seq=scaffold1971_contigs=11, transcript_loc=scaffold1971_contigs=11:133672-134296 Augustus predicted protein sequence Tobacco scaffold1971_contigs=11~133672-134296 Cupredoxin_1 PF13473.1 g71745.t1 - 0.043 13.7 0.2 0.08 12.8 0.2 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain | Ref_seq=scaffold1503_contigs=5, transcript_loc=scaffold1503_contigs=5:32085-32969 Augustus predicted protein sequence Tobacco scaffold1503_contigs=5~32085-32969 YdfA_immunity PF12127.3 g119886.t1 - 0.1 11.4 2 0.13 11.1 1.4 1.1 1 0 0 1 1 1 0 SigmaW regulon antibacterial | Ref_seq=scaffold2718_contigs=12, transcript_loc=scaffold2718_contigs=12:432968-433360 Augustus predicted protein sequence Tobacco scaffold2718_contigs=12~432968-433360 DUF1203 PF06718.6 g113928.t1 - 0.11 12.2 0.2 0.17 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1203) | Ref_seq=scaffold2638_contigs=15, transcript_loc=scaffold2638_contigs=15:761072-761731 Augustus predicted protein sequence Tobacco scaffold2638_contigs=15~761072-761731 HnRNPA1 PF11627.3 g59667.t1 - 0.49 10.5 3.6 0.54 10.4 1.5 1.9 1 1 0 1 1 1 0 Nuclear factor hnRNPA1 | Ref_seq=scaffold1297_contigs=3, transcript_loc=scaffold1297_contigs=3:54532-54867 Augustus predicted protein sequence Tobacco scaffold1297_contigs=3~54532-54867 DUF4290 PF14123.1 g22165.t1 - 0.1 11.7 0.4 0.29 10.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) | Ref_seq=scaffold614_contigs=10, transcript_loc=scaffold614_contigs=10:68709-69002 Augustus predicted protein sequence Tobacco scaffold614_contigs=10~68709-69002 DUF4172 PF13776.1 g86666.t1 - 0.1 12.7 0.1 0.56 10.3 0 2 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) | Ref_seq=scaffold1857_contigs=11, transcript_loc=scaffold1857_contigs=11:148672-149756 Augustus predicted protein sequence Tobacco scaffold1857_contigs=11~148672-149756 SlyX PF04102.7 g1346.t1 - 0.022 15.1 0.9 0.022 15.1 0.6 1.8 2 0 0 2 2 2 0 SlyX | Ref_seq=scaffold180_contigs=3, transcript_loc=scaffold180_contigs=3:26259-26685 Augustus predicted protein sequence Tobacco scaffold180_contigs=3~26259-26685 Vir_act_alpha_C PF10400.4 g46298.t1 - 0.039 14.3 0.2 0.043 14.1 0.1 1.2 1 0 0 1 1 1 0 Virulence activator alpha C-term | Ref_seq=scaffold1068_contigs=2, transcript_loc=scaffold1068_contigs=2:43158-43451 Augustus predicted protein sequence Tobacco scaffold1068_contigs=2~43158-43451 DUF2951 PF11166.3 g123497.t1 - 0.1 12.4 0 0.11 12.3 0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) | Ref_seq=scaffold2760_contigs=2, transcript_loc=scaffold2760_contigs=2:66913-67498 Augustus predicted protein sequence Tobacco scaffold2760_contigs=2~66913-67498 SRP54_N PF02881.14 g99449.t1 - 0.0022 18 0.4 0.41 10.7 0 2.2 2 0 0 2 2 2 2 SRP54-type protein, helical bundle domain | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:580779-581222 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~580779-581222 DUF845 PF05820.6 g21362.t1 - 0.026 14.2 1 0.72 9.6 0 2.7 2 1 1 3 3 3 0 Baculovirus protein of unknown function (DUF845) | Ref_seq=scaffold594_contigs=19, transcript_loc=scaffold594_contigs=19:243754-244269 Augustus predicted protein sequence Tobacco scaffold594_contigs=19~243754-244269 Autophagy_Cterm PF10381.4 g111613.t1 - 0.36 9.9 4.2 0.13 11.3 1.2 1.5 2 0 0 2 2 2 0 Autophagocytosis associated protein C-terminal | Ref_seq=scaffold2590_contigs=10, transcript_loc=scaffold2590_contigs=10:40611-40910 Augustus predicted protein sequence Tobacco scaffold2590_contigs=10~40611-40910 HTH_CodY PF08222.6 g33359.t1 - 0.088 12.1 0.1 0.12 11.7 0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain | Ref_seq=scaffold830_contigs=3, transcript_loc=scaffold830_contigs=3:109021-109224 Augustus predicted protein sequence Tobacco scaffold830_contigs=3~109021-109224 Mac PF12464.3 g68677.t1 - 0.018 15 0.1 0.029 14.3 0.1 1.3 1 0 0 1 1 1 0 Maltose acetyltransferase | Ref_seq=scaffold1477_contigs=17, transcript_loc=scaffold1477_contigs=17:775081-776833 Augustus predicted protein sequence Tobacco scaffold1477_contigs=17~775081-776833 FAM47 PF14642.1 g7686.t1 - 0.014 14.7 2.5 0.015 14.5 1.8 1.1 1 0 0 1 1 1 0 FAM47 family | Ref_seq=scaffold318_contigs=3, transcript_loc=scaffold318_contigs=3:115458-115712 Augustus predicted protein sequence Tobacco scaffold318_contigs=3~115458-115712 CbiX PF01903.12 g65379.t1 - 0.048 13.7 0 1.5 8.9 0 2 1 1 1 2 2 2 0 CbiX | Ref_seq=scaffold1408_contigs=9, transcript_loc=scaffold1408_contigs=9:137952-138975 Augustus predicted protein sequence Tobacco scaffold1408_contigs=9~137952-138975 LRRCT PF01463.19 g42401.t1 - 0.72 10.3 2.6 26 5.4 0.2 3.3 2 1 1 3 3 3 0 Leucine rich repeat C-terminal domain | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:205757-210175 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~205757-210175 GcrA PF07750.6 g48574.t1 - 0.0034 17.6 1 1.1 9.4 0.1 2.1 1 1 1 2 2 2 2 GcrA cell cycle regulator | Ref_seq=scaffold1108_contigs=23, transcript_loc=scaffold1108_contigs=23:1009432-1009875 Augustus predicted protein sequence Tobacco scaffold1108_contigs=23~1009432-1009875 HOOK PF05622.7 g99323.t1 - 0.00029 18.8 1.8 0.00039 18.3 1.3 1.1 1 0 0 1 1 1 1 HOOK protein | Ref_seq=scaffold2173_contigs=15, transcript_loc=scaffold2173_contigs=15:173706-177277 Augustus predicted protein sequence Tobacco scaffold2173_contigs=15~173706-177277 Matrilin_ccoil PF10393.4 g42422.t1 - 0.016 14.5 0.1 0.035 13.4 0 1.6 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin | Ref_seq=scaffold1005_contigs=2, transcript_loc=scaffold1005_contigs=2:261411-261970 Augustus predicted protein sequence Tobacco scaffold1005_contigs=2~261411-261970 Lipase_GDSL_2 PF13472.1 g85005.t1 - 0.018 15.2 0 0.022 14.9 0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family | Ref_seq=scaffold1830_contigs=5, transcript_loc=scaffold1830_contigs=5:11904-12272 Augustus predicted protein sequence Tobacco scaffold1830_contigs=5~11904-12272 2-ph_phosp PF04029.9 g3635.t1 - 0.089 11.7 0 0.34 9.8 0 1.7 1 1 1 2 2 2 0 2-phosphosulpholactate phosphatase | Ref_seq=scaffold237_contigs=4, transcript_loc=scaffold237_contigs=4:150946-151320 Augustus predicted protein sequence Tobacco scaffold237_contigs=4~150946-151320 TOBE PF03459.12 g12949.t1 - 0.016 15.2 3.3 4.6 7.4 0.4 4 2 1 1 3 3 3 0 TOBE domain | Ref_seq=scaffold440_contigs=3, transcript_loc=scaffold440_contigs=3:31123-32412 Augustus predicted protein sequence Tobacco scaffold440_contigs=3~31123-32412 DUF1150 PF06620.6 g107792.t1 - 0.017 14.9 0.1 0.023 14.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1150) | Ref_seq=scaffold2412_contigs=16, transcript_loc=scaffold2412_contigs=16:118458-118682 Augustus predicted protein sequence Tobacco scaffold2412_contigs=16~118458-118682 Spc7 PF08317.6 g89776.t1 - 0.00011 20.9 4.5 0.00013 20.7 3.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein | Ref_seq=scaffold1954_contigs=4, transcript_loc=scaffold1954_contigs=4:10607-10951 Augustus predicted protein sequence Tobacco scaffold1954_contigs=4~10607-10951 DUF4219 PF13961.1 g56436.t1 - 0.000062 22.2 0.2 0.000062 22.2 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4219) | Ref_seq=scaffold1241_contigs=24, transcript_loc=scaffold1241_contigs=24:130379-130597 Augustus predicted protein sequence Tobacco scaffold1241_contigs=24~130379-130597 Remorin_C PF03763.8 g11808.t1 - 0.42 10.1 6.7 0.78 9.2 4.7 1.4 1 0 0 1 1 1 0 Remorin, C-terminal region | Ref_seq=scaffold413_contigs=6, transcript_loc=scaffold413_contigs=6:303630-304133 Augustus predicted protein sequence Tobacco scaffold413_contigs=6~303630-304133 DUF4144 PF13642.1 g107381.t1 - 0.01 16.1 2.1 0.014 15.7 1.5 1.1 1 0 0 1 1 1 0 protein structure with unknown function | Ref_seq=scaffold2382_contigs=32, transcript_loc=scaffold2382_contigs=32:1254419-1254709 Augustus predicted protein sequence Tobacco scaffold2382_contigs=32~1254419-1254709 A2M PF00207.17 g103940.t1 - 0.04 13.4 0.1 8.2 6 0 2.4 2 0 0 2 2 2 0 Alpha-2-macroglobulin family | Ref_seq=scaffold2321_contigs=13, transcript_loc=scaffold2321_contigs=13:46931-48133 Augustus predicted protein sequence Tobacco scaffold2321_contigs=13~46931-48133 2Fe-2S_Ferredox PF11591.3 g88748.t1 - 0.27 10.9 1.3 25 4.6 0 2.4 2 0 0 2 2 2 0 Ferredoxin chloroplastic transit peptide | Ref_seq=scaffold1935_contigs=2, transcript_loc=scaffold1935_contigs=2:28533-29135 Augustus predicted protein sequence Tobacco scaffold1935_contigs=2~28533-29135 OapA_N PF08525.6 g101820.t1 - 0.16 11.7 1.2 0.44 10.3 0.8 1.7 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif | Ref_seq=scaffold2223_contigs=8, transcript_loc=scaffold2223_contigs=8:8108-8365 Augustus predicted protein sequence Tobacco scaffold2223_contigs=8~8108-8365 LEAP-2 PF07359.6 g87159.t1 - 0.032 13.8 0.1 0.042 13.4 0 1.2 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) | Ref_seq=scaffold1870_contigs=16, transcript_loc=scaffold1870_contigs=16:261024-261365 Augustus predicted protein sequence Tobacco scaffold1870_contigs=16~261024-261365 RVP_2 PF08284.6 g44146.t1 - 0.00018 21.4 0 0.00022 21.1 0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease | Ref_seq=scaffold1034_contigs=4, transcript_loc=scaffold1034_contigs=4:81299-81580 Augustus predicted protein sequence Tobacco scaffold1034_contigs=4~81299-81580 Alpha-2-MRAP_C PF06401.6 g66607.t1 - 0.018 14.9 0.1 0.018 14.9 0 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain | Ref_seq=scaffold1442_contigs=17, transcript_loc=scaffold1442_contigs=17:218148-218464 Augustus predicted protein sequence Tobacco scaffold1442_contigs=17~218148-218464 VSG_B PF13206.1 g87597.t1 - 0.013 14.6 0.1 0.013 14.6 0.1 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain | Ref_seq=scaffold1886_contigs=2, transcript_loc=scaffold1886_contigs=2:84679-84963 Augustus predicted protein sequence Tobacco scaffold1886_contigs=2~84679-84963 DUF1090 PF06476.7 g42986.t1 - 0.011 15.3 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) | Ref_seq=scaffold1011_contigs=17, transcript_loc=scaffold1011_contigs=17:108273-108979 Augustus predicted protein sequence Tobacco scaffold1011_contigs=17~108273-108979 Retrotrans_gag PF03732.12 g47180.t1 - 0.002 18.1 0.2 0.0045 17 0.1 1.5 2 0 0 2 2 2 1 Retrotransposon gag protein | Ref_seq=scaffold1088_contigs=10, transcript_loc=scaffold1088_contigs=10:201287-201820 Augustus predicted protein sequence Tobacco scaffold1088_contigs=10~201287-201820